Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0363750 | AES70598.1 | 97.630 | 211 | 4 | 1 | 1 | 211 | 1 | 210 | 1.26e-152 | 431 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0363750 | sp|Q9S7M9|P24B2_ARATH | 65.174 | 201 | 69 | 1 | 11 | 211 | 6 | 205 | 1.15e-97 | 285 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0363750 | G7IV10 | 97.630 | 211 | 4 | 1 | 1 | 211 | 1 | 210 | 6.00e-153 | 431 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0267010 | Msa0363750 | 0.802530 | 5.370860e-49 | -8.615850e-47 |
| Msa0363750 | Msa0384800 | 0.804010 | 2.652639e-49 | -8.615850e-47 |
| Msa0363750 | Msa0452900 | 0.803834 | 2.885108e-49 | -8.615850e-47 |
| Msa0363750 | Msa0453120 | 0.804220 | 2.398081e-49 | -8.615850e-47 |
| Msa0363750 | Msa0726140 | 0.833904 | 4.080154e-56 | -8.615850e-47 |
| Msa0363750 | Msa0745060 | 0.814938 | 1.193873e-51 | -8.615850e-47 |
| Msa0363750 | Msa0825860 | 0.813141 | 2.973911e-51 | -8.615850e-47 |
| Msa0363750 | Msa0833290 | 0.805534 | 1.274164e-49 | -8.615850e-47 |
| Msa0363750 | Msa0846330 | 0.825297 | 5.062494e-54 | -8.615850e-47 |
| Msa0363750 | Msa0846350 | 0.819696 | 1.014039e-52 | -8.615850e-47 |
| Msa0363750 | Msa0981370 | 0.809425 | 1.904473e-50 | -8.615850e-47 |
| Msa0363750 | Msa1016280 | 0.829773 | 4.267366e-55 | -8.615850e-47 |
| Msa0363750 | Msa1024240 | 0.830098 | 3.555670e-55 | -8.615850e-47 |
| Msa0363750 | Msa1092990 | 0.817448 | 3.279721e-52 | -8.615850e-47 |
| Msa0363750 | Msa1100980 | 0.805791 | 1.125404e-49 | -8.615850e-47 |
| Msa0363750 | Msa1109440 | 0.818706 | 1.703864e-52 | -8.615850e-47 |
| Msa0363750 | Msa1269670 | 0.825238 | 5.227661e-54 | -8.615850e-47 |
| Msa0363750 | Msa1270240 | 0.802760 | 4.813496e-49 | -8.615850e-47 |
| Msa0363750 | Msa1287800 | 0.810845 | 9.410528e-51 | -8.615850e-47 |
| Msa0363750 | Msa1287810 | 0.802071 | 6.675955e-49 | -8.615850e-47 |
| Msa0363750 | Msa1404000 | 0.832434 | 9.472513e-56 | -8.615850e-47 |
| Msa0363750 | Msa1433120 | 0.805459 | 1.321102e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0363750 | MtrunA17_Chr3g0102521 | 97.630 | 211 | 4 | 1 | 1 | 211 | 1 | 210 | 1.16e-156 | 431 |
| Msa0363750 | MtrunA17_Chr5g0448141 | 69.154 | 201 | 61 | 1 | 10 | 210 | 11 | 210 | 4.59e-104 | 299 |
| Msa0363750 | MtrunA17_Chr1g0204631 | 31.707 | 205 | 138 | 2 | 7 | 210 | 6 | 209 | 3.97e-32 | 115 |
| Msa0363750 | MtrunA17_Chr7g0260361 | 34.868 | 152 | 99 | 0 | 59 | 210 | 4 | 155 | 3.39e-26 | 99.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0363750 | AT3G07680.1 | 65.174 | 201 | 69 | 1 | 11 | 211 | 6 | 205 | 1.17e-98 | 285 |
| Msa0363750 | AT3G22845.1 | 34.184 | 196 | 128 | 1 | 15 | 210 | 16 | 210 | 1.17e-34 | 122 |
| Msa0363750 | AT3G22845.2 | 33.582 | 134 | 88 | 1 | 15 | 148 | 16 | 148 | 1.56e-19 | 82.4 |
Find 41 sgRNAs with CRISPR-Local
Find 152 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGATCAAATTCGAGAATTT+CGG | 0.231227 | 3_1:-56399973 | Msa0363750:CDS |
| CTTGAATCAGCAGCACTAAT+TGG | 0.246350 | 3_1:-56399314 | Msa0363750:CDS |
| TCAAGAAGGTTTAGATCTTA+TGG | 0.263060 | 3_1:-56400876 | Msa0363750:intron |
| TGCAACATGAATGGTGTTAT+TGG | 0.302058 | 3_1:-56401016 | Msa0363750:CDS |
| TGATCAAATTCGAGAATTTC+GGG | 0.309986 | 3_1:-56399972 | Msa0363750:CDS |
| TTATTATTTGATCTAACATT+GGG | 0.355320 | 3_1:+56399677 | None:intergenic |
| AGATCAAATAATAAAGTTAG+AGG | 0.358789 | 3_1:-56399668 | Msa0363750:CDS |
| TGATGGAATCATTAGGTTAG+AGG | 0.366612 | 3_1:-56400004 | Msa0363750:intron |
| TCTCGAATTTGATCACCATT+AGG | 0.377244 | 3_1:+56399980 | None:intergenic |
| TCTCATTATGTTCAATATGA+AGG | 0.396755 | 3_1:-56400959 | Msa0363750:CDS |
| GCAACATGAATGGTGTTATT+GGG | 0.397343 | 3_1:-56401015 | Msa0363750:CDS |
| CAAACAGAACGTCAATCAAT+AGG | 0.413594 | 3_1:-56399601 | Msa0363750:intron |
| CGCCTCTTCGAAAGAAAGCT+TGG | 0.452737 | 3_1:-56399260 | Msa0363750:CDS |
| TAAGGCCTTGTGAATTGCTC+TGG | 0.463509 | 3_1:+56399337 | None:intergenic |
| CATTAGGTTAGAGGACCTAA+TGG | 0.465084 | 3_1:-56399995 | Msa0363750:intron |
| CTCATTATGTTCAATATGAA+GGG | 0.475358 | 3_1:-56400958 | Msa0363750:CDS |
| TTTATTATTTGATCTAACAT+TGG | 0.478524 | 3_1:+56399676 | None:intergenic |
| TTATTATTATGCAACATGAA+TGG | 0.479867 | 3_1:-56401025 | Msa0363750:CDS |
| ACATGGCATTTAACTCAAGA+AGG | 0.488211 | 3_1:-56400890 | Msa0363750:CDS |
| TGCCATTGCAATGGCAACAT+TGG | 0.489216 | 3_1:+56401054 | None:intergenic |
| GCCATTGCAATGGCAACATT+GGG | 0.493666 | 3_1:+56401055 | None:intergenic |
| GCAGAAGCGATACGGTCCTC+TGG | 0.505969 | 3_1:+56399913 | None:intergenic |
| TAGTGCTGCTGATTCAAGTA+AGG | 0.512939 | 3_1:+56399319 | None:intergenic |
| ACATTCAGTATGAACAACAT+TGG | 0.545696 | 3_1:-56399633 | Msa0363750:CDS |
| GGCGAAGAAGATAAACTTGG+AGG | 0.554267 | 3_1:+56399282 | None:intergenic |
| ATCTTGTGCATGTTGTTCAA+AGG | 0.574244 | 3_1:+56399826 | None:intergenic |
| GGCGGCGAAGAAGATAAACT+TGG | 0.574367 | 3_1:+56399279 | None:intergenic |
| TAATAAGATTGCCATTGCAA+TGG | 0.579914 | 3_1:+56401045 | None:intergenic |
| CAAGCTTTCTTTCGAAGAGG+CGG | 0.588590 | 3_1:+56399261 | None:intergenic |
| ACCCAATGTTGCCATTGCAA+TGG | 0.593616 | 3_1:-56401056 | Msa0363750:CDS |
| TTAGTGAAGCAGAAGCGATA+CGG | 0.597239 | 3_1:+56399905 | None:intergenic |
| AGCCAAGCTTTCTTTCGAAG+AGG | 0.600121 | 3_1:+56399258 | None:intergenic |
| TTTGAACAACATGCACAAGA+TGG | 0.601077 | 3_1:-56399824 | Msa0363750:intron |
| GCGAAGAAGATAAACTTGGA+GGG | 0.601947 | 3_1:+56399283 | None:intergenic |
| GTATGAACAACATTGGCTTG+AGG | 0.617925 | 3_1:-56399626 | Msa0363750:CDS |
| TCATTATGTTCAATATGAAG+GGG | 0.627545 | 3_1:-56400957 | Msa0363750:CDS |
| TATTATTTGATCTAACATTG+GGG | 0.640286 | 3_1:+56399678 | None:intergenic |
| ATTGCAATGGCAACATTGGG+TGG | 0.654978 | 3_1:+56401058 | None:intergenic |
| GACTTTGTAGCTCATACCAG+AGG | 0.660018 | 3_1:-56399929 | Msa0363750:CDS |
| GAGCTCCAGAGCAATTCACA+AGG | 0.691577 | 3_1:-56399342 | Msa0363750:CDS |
| TAAGTGTTACTGATTCAACA+TGG | 0.742795 | 3_1:-56400907 | Msa0363750:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAGTAAAAAAATATGAA+TGG | + | chr3_1:56400697-56400716 | None:intergenic | 10.0% |
| !!! | CATTTTTTTCAAATTATTAT+CGG | + | chr3_1:56400770-56400789 | None:intergenic | 10.0% |
| !! | AAAAAGTAAAAAAATATGAA+TGG | + | chr3_1:56400697-56400716 | None:intergenic | 10.0% |
| !!! | CATTTTTTTCAAATTATTAT+CGG | + | chr3_1:56400770-56400789 | None:intergenic | 10.0% |
| !! | ATTTGAATAATGATTTGATA+AGG | - | chr3_1:56399479-56399498 | Msa0363750:intron | 15.0% |
| !! | TATTATATTCTATCAACATT+GGG | + | chr3_1:56399858-56399877 | None:intergenic | 15.0% |
| !! | TTATTATATTCTATCAACAT+TGG | + | chr3_1:56399859-56399878 | None:intergenic | 15.0% |
| !!! | ATGAATATAATAGTTTTTGA+TGG | - | chr3_1:56400239-56400258 | Msa0363750:intron | 15.0% |
| !! | TTATTATTTGATCTAACATT+GGG | + | chr3_1:56400586-56400605 | None:intergenic | 15.0% |
| !! | TTTATTATTTGATCTAACAT+TGG | + | chr3_1:56400587-56400606 | None:intergenic | 15.0% |
| !! | ATTTGAATAATGATTTGATA+AGG | - | chr3_1:56399479-56399498 | Msa0363750:intron | 15.0% |
| !! | TATTATATTCTATCAACATT+GGG | + | chr3_1:56399858-56399877 | None:intergenic | 15.0% |
| !! | TTATTATATTCTATCAACAT+TGG | + | chr3_1:56399859-56399878 | None:intergenic | 15.0% |
| !!! | ATGAATATAATAGTTTTTGA+TGG | - | chr3_1:56400239-56400258 | Msa0363750:intron | 15.0% |
| !! | TTATTATTTGATCTAACATT+GGG | + | chr3_1:56400586-56400605 | None:intergenic | 15.0% |
| !! | TTTATTATTTGATCTAACAT+TGG | + | chr3_1:56400587-56400606 | None:intergenic | 15.0% |
| !! | TTATTATTATGCAACATGAA+TGG | - | chr3_1:56399235-56399254 | Msa0363750:exon | 20.0% |
| !! | AGGTAATGAAAAAATATGTT+AGG | - | chr3_1:56399499-56399518 | Msa0363750:intron | 20.0% |
| !! | AATGAAAAAATATGTTAGGA+TGG | - | chr3_1:56399503-56399522 | Msa0363750:intron | 20.0% |
| !! | TTCTAATATACTTTCTTCAA+CGG | + | chr3_1:56400031-56400050 | None:intergenic | 20.0% |
| !! | ATATTAGAAATTGTGTTCTT+AGG | - | chr3_1:56400042-56400061 | Msa0363750:intron | 20.0% |
| !! | TATTATTTGATCTAACATTG+GGG | + | chr3_1:56400585-56400604 | None:intergenic | 20.0% |
| !! | AGATCAAATAATAAAGTTAG+AGG | - | chr3_1:56400592-56400611 | Msa0363750:intron | 20.0% |
| !! | TTATTATTATGCAACATGAA+TGG | - | chr3_1:56399235-56399254 | Msa0363750:exon | 20.0% |
| !! | AGGTAATGAAAAAATATGTT+AGG | - | chr3_1:56399499-56399518 | Msa0363750:intron | 20.0% |
| !! | AATGAAAAAATATGTTAGGA+TGG | - | chr3_1:56399503-56399522 | Msa0363750:intron | 20.0% |
| !! | TTCTAATATACTTTCTTCAA+CGG | + | chr3_1:56400031-56400050 | None:intergenic | 20.0% |
| !! | ATATTAGAAATTGTGTTCTT+AGG | - | chr3_1:56400042-56400061 | Msa0363750:intron | 20.0% |
| !! | TATTATTTGATCTAACATTG+GGG | + | chr3_1:56400585-56400604 | None:intergenic | 20.0% |
| !! | AGATCAAATAATAAAGTTAG+AGG | - | chr3_1:56400592-56400611 | Msa0363750:intron | 20.0% |
| ! | TCTCATTATGTTCAATATGA+AGG | - | chr3_1:56399301-56399320 | Msa0363750:CDS | 25.0% |
| ! | CTCATTATGTTCAATATGAA+GGG | - | chr3_1:56399302-56399321 | Msa0363750:CDS | 25.0% |
| ! | TCATTATGTTCAATATGAAG+GGG | - | chr3_1:56399303-56399322 | Msa0363750:CDS | 25.0% |
| ! | AAAAGCAATTTCACAAAGAA+AGG | + | chr3_1:56399436-56399455 | None:intergenic | 25.0% |
| ! | AAAAAACTTTATGCAAGACA+AGG | - | chr3_1:56399802-56399821 | Msa0363750:intron | 25.0% |
| ! | TGCCATGCAATATTATTATT+TGG | - | chr3_1:56399914-56399933 | Msa0363750:CDS | 25.0% |
| ! | GACCAAATAATAATATTGCA+TGG | + | chr3_1:56399919-56399938 | None:intergenic | 25.0% |
| !! | TAGTTTTTGATGGAATCATT+AGG | - | chr3_1:56400249-56400268 | Msa0363750:intron | 25.0% |
| ! | TCTCATTATGTTCAATATGA+AGG | - | chr3_1:56399301-56399320 | Msa0363750:CDS | 25.0% |
| ! | CTCATTATGTTCAATATGAA+GGG | - | chr3_1:56399302-56399321 | Msa0363750:CDS | 25.0% |
| ! | TCATTATGTTCAATATGAAG+GGG | - | chr3_1:56399303-56399322 | Msa0363750:CDS | 25.0% |
| ! | AAAAGCAATTTCACAAAGAA+AGG | + | chr3_1:56399436-56399455 | None:intergenic | 25.0% |
| ! | AAAAAACTTTATGCAAGACA+AGG | - | chr3_1:56399802-56399821 | Msa0363750:intron | 25.0% |
| ! | TGCCATGCAATATTATTATT+TGG | - | chr3_1:56399914-56399933 | Msa0363750:CDS | 25.0% |
| ! | GACCAAATAATAATATTGCA+TGG | + | chr3_1:56399919-56399938 | None:intergenic | 25.0% |
| !! | TAGTTTTTGATGGAATCATT+AGG | - | chr3_1:56400249-56400268 | Msa0363750:intron | 25.0% |
| TAATAAGATTGCCATTGCAA+TGG | + | chr3_1:56399218-56399237 | None:intergenic | 30.0% | |
| !! | TAAGTGTTACTGATTCAACA+TGG | - | chr3_1:56399353-56399372 | Msa0363750:CDS | 30.0% |
| TCAAGAAGGTTTAGATCTTA+TGG | - | chr3_1:56399384-56399403 | Msa0363750:intron | 30.0% | |
| ATCATGTGCAAAACAAATTG+AGG | - | chr3_1:56399534-56399553 | Msa0363750:intron | 30.0% | |
| TTTATGCAAGACAAGGATAA+TGG | - | chr3_1:56399809-56399828 | Msa0363750:intron | 30.0% | |
| ATGTATGATACAAAGAGACT+AGG | - | chr3_1:56399996-56400015 | Msa0363750:intron | 30.0% | |
| ACAGTTTACATCAAAGATAG+AGG | - | chr3_1:56400173-56400192 | Msa0363750:intron | 30.0% | |
| GTGATCAAATTCGAGAATTT+CGG | - | chr3_1:56400287-56400306 | Msa0363750:intron | 30.0% | |
| TGATCAAATTCGAGAATTTC+GGG | - | chr3_1:56400288-56400307 | Msa0363750:intron | 30.0% | |
| !!! | AAGTCGATTTTTTCACGATA+AGG | + | chr3_1:56400388-56400407 | None:intergenic | 30.0% |
| GTTGTTCAAAGGTTGAAAAA+TGG | + | chr3_1:56400426-56400445 | None:intergenic | 30.0% | |
| AAAGCTTAACAGTCACAAAA+TGG | + | chr3_1:56400511-56400530 | None:intergenic | 30.0% | |
| ACATTCAGTATGAACAACAT+TGG | - | chr3_1:56400627-56400646 | Msa0363750:intron | 30.0% | |
| GTTAATGTGAGAATCTTATC+CGG | + | chr3_1:56400738-56400757 | None:intergenic | 30.0% | |
| !!! | CAATTTTTGGTAGATTGAGA+AGG | + | chr3_1:56401070-56401089 | None:intergenic | 30.0% |
| TAATAAGATTGCCATTGCAA+TGG | + | chr3_1:56399218-56399237 | None:intergenic | 30.0% | |
| !! | TAAGTGTTACTGATTCAACA+TGG | - | chr3_1:56399353-56399372 | Msa0363750:CDS | 30.0% |
| TCAAGAAGGTTTAGATCTTA+TGG | - | chr3_1:56399384-56399403 | Msa0363750:intron | 30.0% | |
| ATCATGTGCAAAACAAATTG+AGG | - | chr3_1:56399534-56399553 | Msa0363750:intron | 30.0% | |
| TTTATGCAAGACAAGGATAA+TGG | - | chr3_1:56399809-56399828 | Msa0363750:intron | 30.0% | |
| ATGTATGATACAAAGAGACT+AGG | - | chr3_1:56399996-56400015 | Msa0363750:intron | 30.0% | |
| ACAGTTTACATCAAAGATAG+AGG | - | chr3_1:56400173-56400192 | Msa0363750:intron | 30.0% | |
| GTGATCAAATTCGAGAATTT+CGG | - | chr3_1:56400287-56400306 | Msa0363750:intron | 30.0% | |
| TGATCAAATTCGAGAATTTC+GGG | - | chr3_1:56400288-56400307 | Msa0363750:intron | 30.0% | |
| !!! | AAGTCGATTTTTTCACGATA+AGG | + | chr3_1:56400388-56400407 | None:intergenic | 30.0% |
| GTTGTTCAAAGGTTGAAAAA+TGG | + | chr3_1:56400426-56400445 | None:intergenic | 30.0% | |
| AAAGCTTAACAGTCACAAAA+TGG | + | chr3_1:56400511-56400530 | None:intergenic | 30.0% | |
| ACATTCAGTATGAACAACAT+TGG | - | chr3_1:56400627-56400646 | Msa0363750:intron | 30.0% | |
| GTTAATGTGAGAATCTTATC+CGG | + | chr3_1:56400738-56400757 | None:intergenic | 30.0% | |
| !!! | CAATTTTTGGTAGATTGAGA+AGG | + | chr3_1:56401070-56401089 | None:intergenic | 30.0% |
| !! | TGCAACATGAATGGTGTTAT+TGG | - | chr3_1:56399244-56399263 | Msa0363750:exon | 35.0% |
| !! | GCAACATGAATGGTGTTATT+GGG | - | chr3_1:56399245-56399264 | Msa0363750:exon | 35.0% |
| ACATGGCATTTAACTCAAGA+AGG | - | chr3_1:56399370-56399389 | Msa0363750:intron | 35.0% | |
| TGGCAAAATAGTGTGTTAGA+TGG | + | chr3_1:56399899-56399918 | None:intergenic | 35.0% | |
| TGATGGAATCATTAGGTTAG+AGG | - | chr3_1:56400256-56400275 | Msa0363750:intron | 35.0% | |
| TCTCGAATTTGATCACCATT+AGG | + | chr3_1:56400283-56400302 | None:intergenic | 35.0% | |
| ATCTTGTGCATGTTGTTCAA+AGG | + | chr3_1:56400437-56400456 | None:intergenic | 35.0% | |
| TTTGAACAACATGCACAAGA+TGG | - | chr3_1:56400436-56400455 | Msa0363750:intron | 35.0% | |
| ! | GACTGTTAAGCTTTCTAGAA+TGG | - | chr3_1:56400517-56400536 | Msa0363750:intron | 35.0% |
| CAAACAGAACGTCAATCAAT+AGG | - | chr3_1:56400659-56400678 | Msa0363750:intron | 35.0% | |
| TCAGAAGTTTCGATGCTATA+TGG | - | chr3_1:56400843-56400862 | Msa0363750:intron | 35.0% | |
| !! | TGCAACATGAATGGTGTTAT+TGG | - | chr3_1:56399244-56399263 | Msa0363750:exon | 35.0% |
| !! | GCAACATGAATGGTGTTATT+GGG | - | chr3_1:56399245-56399264 | Msa0363750:exon | 35.0% |
| ACATGGCATTTAACTCAAGA+AGG | - | chr3_1:56399370-56399389 | Msa0363750:intron | 35.0% | |
| TGGCAAAATAGTGTGTTAGA+TGG | + | chr3_1:56399899-56399918 | None:intergenic | 35.0% | |
| TGATGGAATCATTAGGTTAG+AGG | - | chr3_1:56400256-56400275 | Msa0363750:intron | 35.0% | |
| TCTCGAATTTGATCACCATT+AGG | + | chr3_1:56400283-56400302 | None:intergenic | 35.0% | |
| ATCTTGTGCATGTTGTTCAA+AGG | + | chr3_1:56400437-56400456 | None:intergenic | 35.0% | |
| TTTGAACAACATGCACAAGA+TGG | - | chr3_1:56400436-56400455 | Msa0363750:intron | 35.0% | |
| ! | GACTGTTAAGCTTTCTAGAA+TGG | - | chr3_1:56400517-56400536 | Msa0363750:intron | 35.0% |
| CAAACAGAACGTCAATCAAT+AGG | - | chr3_1:56400659-56400678 | Msa0363750:intron | 35.0% | |
| TCAGAAGTTTCGATGCTATA+TGG | - | chr3_1:56400843-56400862 | Msa0363750:intron | 35.0% | |
| CATTAGGTTAGAGGACCTAA+TGG | - | chr3_1:56400265-56400284 | Msa0363750:intron | 40.0% | |
| TTAGTGAAGCAGAAGCGATA+CGG | + | chr3_1:56400358-56400377 | None:intergenic | 40.0% | |
| !! | GTATGAACAACATTGGCTTG+AGG | - | chr3_1:56400634-56400653 | Msa0363750:intron | 40.0% |
| ! | GTTATCACATGTGCTGATGT+TGG | - | chr3_1:56400802-56400821 | Msa0363750:intron | 40.0% |
| GCATCGAAACTTCTGATAGA+AGG | + | chr3_1:56400839-56400858 | None:intergenic | 40.0% | |
| !! | TAGTGCTGCTGATTCAAGTA+AGG | + | chr3_1:56400944-56400963 | None:intergenic | 40.0% |
| CTTGAATCAGCAGCACTAAT+TGG | - | chr3_1:56400946-56400965 | Msa0363750:CDS | 40.0% | |
| GCGAAGAAGATAAACTTGGA+GGG | + | chr3_1:56400980-56400999 | None:intergenic | 40.0% | |
| CATTAGGTTAGAGGACCTAA+TGG | - | chr3_1:56400265-56400284 | Msa0363750:intron | 40.0% | |
| TTAGTGAAGCAGAAGCGATA+CGG | + | chr3_1:56400358-56400377 | None:intergenic | 40.0% | |
| !! | GTATGAACAACATTGGCTTG+AGG | - | chr3_1:56400634-56400653 | Msa0363750:intron | 40.0% |
| ! | GTTATCACATGTGCTGATGT+TGG | - | chr3_1:56400802-56400821 | Msa0363750:intron | 40.0% |
| GCATCGAAACTTCTGATAGA+AGG | + | chr3_1:56400839-56400858 | None:intergenic | 40.0% | |
| !! | TAGTGCTGCTGATTCAAGTA+AGG | + | chr3_1:56400944-56400963 | None:intergenic | 40.0% |
| CTTGAATCAGCAGCACTAAT+TGG | - | chr3_1:56400946-56400965 | Msa0363750:CDS | 40.0% | |
| GCGAAGAAGATAAACTTGGA+GGG | + | chr3_1:56400980-56400999 | None:intergenic | 40.0% | |
| ATTGCAATGGCAACATTGGG+TGG | + | chr3_1:56399205-56399224 | None:intergenic | 45.0% | |
| ACCCAATGTTGCCATTGCAA+TGG | - | chr3_1:56399204-56399223 | Msa0363750:three_prime_UTR | 45.0% | |
| GCCATTGCAATGGCAACATT+GGG | + | chr3_1:56399208-56399227 | None:intergenic | 45.0% | |
| TGCCATTGCAATGGCAACAT+TGG | + | chr3_1:56399209-56399228 | None:intergenic | 45.0% | |
| GACTTTGTAGCTCATACCAG+AGG | - | chr3_1:56400331-56400350 | Msa0363750:intron | 45.0% | |
| GGGTAAAATGCTCTGCATAG+AGG | + | chr3_1:56400565-56400584 | None:intergenic | 45.0% | |
| TAGCATCCTTACTCAGACAC+CGG | - | chr3_1:56400716-56400735 | Msa0363750:intron | 45.0% | |
| TCTTATCCGGTGTCTGAGTA+AGG | + | chr3_1:56400725-56400744 | None:intergenic | 45.0% | |
| ! | TAAGGCCTTGTGAATTGCTC+TGG | + | chr3_1:56400926-56400945 | None:intergenic | 45.0% |
| GGCGAAGAAGATAAACTTGG+AGG | + | chr3_1:56400981-56401000 | None:intergenic | 45.0% | |
| CAAGCTTTCTTTCGAAGAGG+CGG | + | chr3_1:56401002-56401021 | None:intergenic | 45.0% | |
| AGCCAAGCTTTCTTTCGAAG+AGG | + | chr3_1:56401005-56401024 | None:intergenic | 45.0% | |
| ATTGCAATGGCAACATTGGG+TGG | + | chr3_1:56399205-56399224 | None:intergenic | 45.0% | |
| ACCCAATGTTGCCATTGCAA+TGG | - | chr3_1:56399204-56399223 | Msa0363750:three_prime_UTR | 45.0% | |
| GCCATTGCAATGGCAACATT+GGG | + | chr3_1:56399208-56399227 | None:intergenic | 45.0% | |
| TGCCATTGCAATGGCAACAT+TGG | + | chr3_1:56399209-56399228 | None:intergenic | 45.0% | |
| GACTTTGTAGCTCATACCAG+AGG | - | chr3_1:56400331-56400350 | Msa0363750:intron | 45.0% | |
| GGGTAAAATGCTCTGCATAG+AGG | + | chr3_1:56400565-56400584 | None:intergenic | 45.0% | |
| TAGCATCCTTACTCAGACAC+CGG | - | chr3_1:56400716-56400735 | Msa0363750:intron | 45.0% | |
| TCTTATCCGGTGTCTGAGTA+AGG | + | chr3_1:56400725-56400744 | None:intergenic | 45.0% | |
| ! | TAAGGCCTTGTGAATTGCTC+TGG | + | chr3_1:56400926-56400945 | None:intergenic | 45.0% |
| GGCGAAGAAGATAAACTTGG+AGG | + | chr3_1:56400981-56401000 | None:intergenic | 45.0% | |
| CAAGCTTTCTTTCGAAGAGG+CGG | + | chr3_1:56401002-56401021 | None:intergenic | 45.0% | |
| AGCCAAGCTTTCTTTCGAAG+AGG | + | chr3_1:56401005-56401024 | None:intergenic | 45.0% | |
| !!! | ATGAAAATAAAATTTTAAAT+AGG | + | chr3_1:56400099-56400118 | None:intergenic | 5.0% |
| !!! | ATGAAAATAAAATTTTAAAT+AGG | + | chr3_1:56400099-56400118 | None:intergenic | 5.0% |
| ! | CTTCTGATAGAAGGCATGCC+TGG | + | chr3_1:56400830-56400849 | None:intergenic | 50.0% |
| GAGCTCCAGAGCAATTCACA+AGG | - | chr3_1:56400918-56400937 | Msa0363750:CDS | 50.0% | |
| GGCGGCGAAGAAGATAAACT+TGG | + | chr3_1:56400984-56401003 | None:intergenic | 50.0% | |
| CGCCTCTTCGAAAGAAAGCT+TGG | - | chr3_1:56401000-56401019 | Msa0363750:CDS | 50.0% | |
| ! | CTTCTGATAGAAGGCATGCC+TGG | + | chr3_1:56400830-56400849 | None:intergenic | 50.0% |
| GAGCTCCAGAGCAATTCACA+AGG | - | chr3_1:56400918-56400937 | Msa0363750:CDS | 50.0% | |
| GGCGGCGAAGAAGATAAACT+TGG | + | chr3_1:56400984-56401003 | None:intergenic | 50.0% | |
| CGCCTCTTCGAAAGAAAGCT+TGG | - | chr3_1:56401000-56401019 | Msa0363750:CDS | 50.0% | |
| ! | CATGTGCTGATGTTGGCACC+AGG | - | chr3_1:56400809-56400828 | Msa0363750:intron | 55.0% |
| ! | CATGTGCTGATGTTGGCACC+AGG | - | chr3_1:56400809-56400828 | Msa0363750:intron | 55.0% |
| GCAGAAGCGATACGGTCCTC+TGG | + | chr3_1:56400350-56400369 | None:intergenic | 60.0% | |
| GCAGAAGCGATACGGTCCTC+TGG | + | chr3_1:56400350-56400369 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 56399190 | 56401092 | 56399190 | ID=Msa0363750;Name=Msa0363750 |
| chr3_1 | mRNA | 56399190 | 56401092 | 56399190 | ID=Msa0363750-mRNA-1;Parent=Msa0363750;Name=Msa0363750-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0.33|0.25|1|1|1|4|63|211 |
| chr3_1 | exon | 56399190 | 56399377 | 56399190 | ID=Msa0363750-mRNA-1:exon:10406;Parent=Msa0363750-mRNA-1 |
| chr3_1 | exon | 56399602 | 56399709 | 56399602 | ID=Msa0363750-mRNA-1:exon:10405;Parent=Msa0363750-mRNA-1 |
| chr3_1 | exon | 56399825 | 56400011 | 56399825 | ID=Msa0363750-mRNA-1:exon:10404;Parent=Msa0363750-mRNA-1 |
| chr3_1 | exon | 56400877 | 56401092 | 56400877 | ID=Msa0363750-mRNA-1:exon:10403;Parent=Msa0363750-mRNA-1 |
| chr3_1 | CDS | 56400877 | 56401092 | 56400877 | ID=Msa0363750-mRNA-1:cds;Parent=Msa0363750-mRNA-1 |
| chr3_1 | CDS | 56399825 | 56400011 | 56399825 | ID=Msa0363750-mRNA-1:cds;Parent=Msa0363750-mRNA-1 |
| chr3_1 | CDS | 56399602 | 56399709 | 56399602 | ID=Msa0363750-mRNA-1:cds;Parent=Msa0363750-mRNA-1 |
| chr3_1 | CDS | 56399253 | 56399377 | 56399253 | ID=Msa0363750-mRNA-1:cds;Parent=Msa0363750-mRNA-1 |
| chr3_1 | three_prime_UTR | 56399190 | 56399252 | 56399190 | ID=Msa0363750-mRNA-1:three_prime_utr;Parent=Msa0363750-mRNA-1 |
| Gene Sequence |
| Protein sequence |
