Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0833290 | AES94182.1 | 63.934 | 61 | 20 | 1 | 105 | 163 | 56 | 116 | 1.68e-12 | 75.9 |
| Msa0833290 | AES94182.1 | 68.293 | 164 | 52 | 0 | 5 | 168 | 112 | 275 | 4.16e-70 | 226 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0833290 | sp|Q8VYJ2|AHL1_ARATH | 52.041 | 98 | 40 | 3 | 2 | 93 | 221 | 317 | 2.11e-20 | 89.7 |
| Msa0833290 | sp|Q8VYJ2|AHL1_ARATH | 53.425 | 73 | 34 | 0 | 90 | 162 | 155 | 227 | 1.33e-18 | 84.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0833290 | G7KG54 | 63.934 | 61 | 20 | 1 | 105 | 163 | 56 | 116 | 8.03e-13 | 75.9 |
| Msa0833290 | G7KG54 | 68.293 | 164 | 52 | 0 | 5 | 168 | 112 | 275 | 1.99e-70 | 226 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015400 | Msa0833290 | 0.808830 | 2.553366e-50 | -8.615850e-47 |
| Msa0016570 | Msa0833290 | 0.808787 | 2.608690e-50 | -8.615850e-47 |
| Msa0095970 | Msa0833290 | 0.860051 | 2.703896e-63 | -8.615850e-47 |
| Msa0102070 | Msa0833290 | 0.849629 | 2.860773e-60 | -8.615850e-47 |
| Msa0107580 | Msa0833290 | 0.809956 | 1.464317e-50 | -8.615850e-47 |
| Msa0111510 | Msa0833290 | 0.807041 | 6.135155e-50 | -8.615850e-47 |
| Msa0636170 | Msa0833290 | 0.817497 | 3.198758e-52 | -8.615850e-47 |
| Msa0647170 | Msa0833290 | 0.813116 | 3.012512e-51 | -8.615850e-47 |
| Msa0678930 | Msa0833290 | 0.822007 | 2.982770e-53 | -8.615850e-47 |
| Msa0694370 | Msa0833290 | 0.806163 | 9.398557e-50 | -8.615850e-47 |
| Msa0697060 | Msa0833290 | 0.800594 | 1.339611e-48 | -8.615850e-47 |
| Msa0726140 | Msa0833290 | 0.856662 | 2.764349e-62 | -8.615850e-47 |
| Msa0729800 | Msa0833290 | 0.823740 | 1.176802e-53 | -8.615850e-47 |
| Msa0731560 | Msa0833290 | 0.819122 | 1.370851e-52 | -8.615850e-47 |
| Msa0731940 | Msa0833290 | 0.822141 | 2.776820e-53 | -8.615850e-47 |
| Msa0733290 | Msa0833290 | 0.811859 | 5.671079e-51 | -8.615850e-47 |
| Msa0735170 | Msa0833290 | 0.800493 | 1.404602e-48 | -8.615850e-47 |
| Msa0743810 | Msa0833290 | 0.844951 | 5.498529e-59 | -8.615850e-47 |
| Msa0745060 | Msa0833290 | 0.849597 | 2.920657e-60 | -8.615850e-47 |
| Msa0766630 | Msa0833290 | 0.809054 | 2.287609e-50 | -8.615850e-47 |
| Msa0767720 | Msa0833290 | 0.820996 | 5.105426e-53 | -8.615850e-47 |
| Msa0768290 | Msa0833290 | 0.806358 | 8.550468e-50 | -8.615850e-47 |
| Msa0768370 | Msa0833290 | 0.803702 | 3.073556e-49 | -8.615850e-47 |
| Msa0777870 | Msa0833290 | 0.825580 | 4.338129e-54 | -8.615850e-47 |
| Msa0783160 | Msa0833290 | 0.846022 | 2.818542e-59 | -8.615850e-47 |
| Msa0784290 | Msa0833290 | 0.830117 | 3.518723e-55 | -8.615850e-47 |
| Msa0784300 | Msa0833290 | 0.834160 | 3.519033e-56 | -8.615850e-47 |
| Msa0787600 | Msa0833290 | 0.854337 | 1.316435e-61 | -8.615850e-47 |
| Msa0808010 | Msa0833290 | 0.842827 | 2.038331e-58 | -8.615850e-47 |
| Msa0808020 | Msa0833290 | 0.836024 | 1.192109e-56 | -8.615850e-47 |
| Msa0810220 | Msa0833290 | 0.805218 | 1.484405e-49 | -8.615850e-47 |
| Msa0825860 | Msa0833290 | 0.858488 | 7.958593e-63 | -8.615850e-47 |
| Msa0833290 | Msa0833300 | 0.858627 | 7.234672e-63 | -8.615850e-47 |
| Msa0833290 | Msa0844490 | 0.813855 | 2.071887e-51 | -8.615850e-47 |
| Msa0833290 | Msa0846210 | 0.829963 | 3.834786e-55 | -8.615850e-47 |
| Msa0833290 | Msa0846330 | 0.839156 | 1.875183e-57 | -8.615850e-47 |
| Msa0833290 | Msa0846350 | 0.835552 | 1.570013e-56 | -8.615850e-47 |
| Msa0833290 | Msa0848960 | 0.812482 | 4.147286e-51 | -8.615850e-47 |
| Msa0833290 | Msa0854980 | 0.821308 | 4.325275e-53 | -8.615850e-47 |
| Msa0833290 | Msa0857680 | 0.811865 | 5.651882e-51 | -8.615850e-47 |
| Msa0833290 | Msa0858980 | 0.826949 | 2.048296e-54 | -8.615850e-47 |
| Msa0833290 | Msa0865320 | 0.838090 | 3.534746e-57 | -8.615850e-47 |
| Msa0833290 | Msa0872230 | 0.800428 | 1.447813e-48 | -8.615850e-47 |
| Msa0833290 | Msa0885280 | 0.839564 | 1.469531e-57 | -8.615850e-47 |
| Msa0833290 | Msa0885290 | 0.855748 | 5.121132e-62 | -8.615850e-47 |
| Msa0833290 | Msa0888370 | 0.802946 | 4.406888e-49 | -8.615850e-47 |
| Msa0833290 | Msa0888420 | 0.843951 | 1.021775e-58 | -8.615850e-47 |
| Msa0833290 | Msa0899430 | 0.809924 | 1.487588e-50 | -8.615850e-47 |
| Msa0833290 | Msa0899450 | 0.815913 | 7.246033e-52 | -8.615850e-47 |
| Msa0833290 | Msa0907260 | 0.829900 | 3.973803e-55 | -8.615850e-47 |
| Msa0833290 | Msa0914760 | 0.850705 | 1.428695e-60 | -8.615850e-47 |
| Msa0833290 | Msa0952720 | 0.837016 | 6.665979e-57 | -8.615850e-47 |
| Msa0833290 | Msa0953120 | 0.805650 | 1.205181e-49 | -8.615850e-47 |
| Msa0833290 | Msa0954020 | 0.802888 | 4.530206e-49 | -8.615850e-47 |
| Msa0833290 | Msa0956270 | 0.834247 | 3.347722e-56 | -8.615850e-47 |
| Msa0833290 | Msa0957680 | 0.804037 | 2.618473e-49 | -8.615850e-47 |
| Msa0833290 | Msa0958550 | 0.815950 | 7.109529e-52 | -8.615850e-47 |
| Msa0833290 | Msa0966750 | 0.810293 | 1.239061e-50 | -8.615850e-47 |
| Msa0833290 | Msa0974080 | 0.807164 | 5.777974e-50 | -8.615850e-47 |
| Msa0833290 | Msa0981370 | 0.855635 | 5.526847e-62 | -8.615850e-47 |
| Msa0833290 | Msa0989060 | 0.839261 | 1.761647e-57 | -8.615850e-47 |
| Msa0833290 | Msa0991820 | 0.806724 | 7.157553e-50 | -8.615850e-47 |
| Msa0833290 | Msa0991830 | 0.805821 | 1.109174e-49 | -8.615850e-47 |
| Msa0833290 | Msa0998690 | 0.842655 | 2.264161e-58 | -8.615850e-47 |
| Msa0833290 | Msa1014540 | 0.825354 | 4.906015e-54 | -8.615850e-47 |
| Msa0833290 | Msa1016280 | 0.863730 | 2.020611e-64 | -8.615850e-47 |
| Msa0833290 | Msa1024240 | 0.823079 | 1.679680e-53 | -8.615850e-47 |
| Msa0833290 | Msa1025360 | 0.853869 | 1.795951e-61 | -8.615850e-47 |
| Msa0833290 | Msa1025370 | 0.854445 | 1.225303e-61 | -8.615850e-47 |
| Msa0833290 | Msa1044830 | 0.851306 | 9.673479e-61 | -8.615850e-47 |
| Msa0833290 | Msa1044840 | 0.856804 | 2.510859e-62 | -8.615850e-47 |
| Msa0833290 | Msa1060840 | 0.855937 | 4.511270e-62 | -8.615850e-47 |
| Msa0833290 | Msa1065570 | 0.810107 | 1.358742e-50 | -8.615850e-47 |
| Msa0833290 | Msa1079180 | 0.805031 | 1.624551e-49 | -8.615850e-47 |
| Msa0833290 | Msa1092990 | 0.842622 | 2.310772e-58 | -8.615850e-47 |
| Msa0833290 | Msa1099970 | 0.811328 | 7.397828e-51 | -8.615850e-47 |
| Msa0833290 | Msa1100980 | 0.863691 | 2.077310e-64 | -8.615850e-47 |
| Msa0833290 | Msa1109440 | 0.874379 | 7.071203e-68 | -8.615850e-47 |
| Msa0833290 | Msa1117150 | 0.804644 | 1.956314e-49 | -8.615850e-47 |
| Msa0833290 | Msa1121200 | 0.875211 | 3.683730e-68 | -8.615850e-47 |
| Msa0833290 | Msa1121480 | 0.824456 | 7.991047e-54 | -8.615850e-47 |
| Msa0833290 | Msa1121490 | 0.824717 | 6.939216e-54 | -8.615850e-47 |
| Msa0833290 | Msa1135740 | 0.842294 | 2.822887e-58 | -8.615850e-47 |
| Msa0833290 | Msa1136090 | 0.851499 | 8.528501e-61 | -8.615850e-47 |
| Msa0833290 | Msa1146110 | 0.823811 | 1.132731e-53 | -8.615850e-47 |
| Msa0833290 | Msa1149360 | 0.832036 | 1.188428e-55 | -8.615850e-47 |
| Msa0833290 | Msa1150370 | 0.852958 | 3.279312e-61 | -8.615850e-47 |
| Msa0833290 | Msa1184420 | 0.831843 | 1.326651e-55 | -8.615850e-47 |
| Msa0833290 | Msa1187940 | 0.825207 | 5.317078e-54 | -8.615850e-47 |
| Msa0833290 | Msa1187950 | 0.840004 | 1.128807e-57 | -8.615850e-47 |
| Msa0833290 | Msa1192640 | 0.863991 | 1.675737e-64 | -8.615850e-47 |
| Msa0833290 | Msa1195190 | 0.808584 | 2.882670e-50 | -8.615850e-47 |
| Msa0833290 | Msa1230430 | 0.802420 | 5.658351e-49 | -8.615850e-47 |
| Msa0833290 | Msa1244250 | 0.802903 | 4.497167e-49 | -8.615850e-47 |
| Msa0833290 | Msa1246880 | 0.820807 | 5.641906e-53 | -8.615850e-47 |
| Msa0833290 | Msa1269670 | 0.846487 | 2.105530e-59 | -8.615850e-47 |
| Msa0833290 | Msa1270230 | 0.856481 | 3.124120e-62 | -8.615850e-47 |
| Msa0833290 | Msa1270240 | 0.850704 | 1.429189e-60 | -8.615850e-47 |
| Msa0833290 | Msa1270270 | 0.826917 | 2.084408e-54 | -8.615850e-47 |
| Msa0833290 | Msa1273230 | 0.814750 | 1.314018e-51 | -8.615850e-47 |
| Msa0833290 | Msa1276890 | 0.800731 | 1.256015e-48 | -8.615850e-47 |
| Msa0833290 | Msa1283330 | 0.848995 | 4.295634e-60 | -8.615850e-47 |
| Msa0833290 | Msa1284680 | 0.819252 | 1.280579e-52 | -8.615850e-47 |
| Msa0833290 | Msa1285930 | 0.871964 | 4.572248e-67 | -8.615850e-47 |
| Msa0833290 | Msa1287800 | 0.864959 | 8.352979e-65 | -8.615850e-47 |
| Msa0833290 | Msa1287810 | 0.870930 | 1.005754e-66 | -8.615850e-47 |
| Msa0833290 | Msa1287830 | 0.803371 | 3.598691e-49 | -8.615850e-47 |
| Msa0833290 | Msa1289420 | 0.806374 | 8.483708e-50 | -8.615850e-47 |
| Msa0833290 | Msa1289430 | 0.825808 | 3.830949e-54 | -8.615850e-47 |
| Msa0833290 | Msa1297210 | 0.824696 | 7.016595e-54 | -8.615850e-47 |
| Msa0833290 | Msa1305480 | 0.810462 | 1.138761e-50 | -8.615850e-47 |
| Msa0833290 | Msa1307890 | 0.845494 | 3.922280e-59 | -8.615850e-47 |
| Msa0833290 | Msa1320300 | 0.815311 | 9.865348e-52 | -8.615850e-47 |
| Msa0833290 | Msa1340590 | 0.801010 | 1.101666e-48 | -8.615850e-47 |
| Msa0833290 | Msa1342200 | 0.813558 | 2.409228e-51 | -8.615850e-47 |
| Msa0833290 | Msa1369430 | 0.822726 | 2.029877e-53 | -8.615850e-47 |
| Msa0833290 | Msa1382690 | 0.809841 | 1.549785e-50 | -8.615850e-47 |
| Msa0833290 | Msa1402790 | 0.806610 | 7.565936e-50 | -8.615850e-47 |
| Msa0833290 | Msa1404000 | 0.859767 | 3.293939e-63 | -8.615850e-47 |
| Msa0833290 | Msa1404020 | 0.856494 | 3.097537e-62 | -8.615850e-47 |
| Msa0833290 | Msa1408780 | 0.803499 | 3.385214e-49 | -8.615850e-47 |
| Msa0833290 | Msa1415310 | 0.832866 | 7.403141e-56 | -8.615850e-47 |
| Msa0833290 | Msa1433120 | 0.871855 | 4.971728e-67 | -8.615850e-47 |
| Msa0833290 | Msa1444440 | 0.804845 | 1.776705e-49 | -8.615850e-47 |
| Msa0833290 | Msa1451570 | 0.814357 | 1.605310e-51 | -8.615850e-47 |
| Msa0833290 | Msa1467020 | 0.802686 | 4.986913e-49 | -8.615850e-47 |
| Msa0142220 | Msa0833290 | 0.826571 | 2.522457e-54 | -8.615850e-47 |
| Msa0145750 | Msa0833290 | 0.825198 | 5.342088e-54 | -8.615850e-47 |
| Msa0153910 | Msa0833290 | 0.861479 | 9.966841e-64 | -8.615850e-47 |
| Msa0188460 | Msa0833290 | 0.838893 | 2.193767e-57 | -8.615850e-47 |
| Msa0208090 | Msa0833290 | 0.810075 | 1.380674e-50 | -8.615850e-47 |
| Msa0227480 | Msa0833290 | 0.852610 | 4.122558e-61 | -8.615850e-47 |
| Msa0231000 | Msa0833290 | 0.827608 | 1.424531e-54 | -8.615850e-47 |
| Msa0232850 | Msa0833290 | 0.825384 | 4.827714e-54 | -8.615850e-47 |
| Msa0235140 | Msa0833290 | 0.815015 | 1.147701e-51 | -8.615850e-47 |
| Msa0365500 | Msa0833290 | 0.829918 | 3.934674e-55 | -8.615850e-47 |
| Msa0379940 | Msa0833290 | 0.816716 | 4.792057e-52 | -8.615850e-47 |
| Msa0384800 | Msa0833290 | 0.828427 | 9.043078e-55 | -8.615850e-47 |
| Msa0394970 | Msa0833290 | 0.807815 | 4.203175e-50 | -8.615850e-47 |
| Msa0402290 | Msa0833290 | 0.809526 | 1.811713e-50 | -8.615850e-47 |
| Msa0406120 | Msa0833290 | 0.840447 | 8.646967e-58 | -8.615850e-47 |
| Msa0414410 | Msa0833290 | 0.875977 | 2.012640e-68 | -8.615850e-47 |
| Msa0414420 | Msa0833290 | 0.863223 | 2.902436e-64 | -8.615850e-47 |
| Msa0417080 | Msa0833290 | 0.805875 | 1.080568e-49 | -8.615850e-47 |
| Msa0430420 | Msa0833290 | 0.805228 | 1.477282e-49 | -8.615850e-47 |
| Msa0436780 | Msa0833290 | 0.843917 | 1.043358e-58 | -8.615850e-47 |
| Msa0436800 | Msa0833290 | 0.808683 | 2.744964e-50 | -8.615850e-47 |
| Msa0437990 | Msa0833290 | 0.808697 | 2.727278e-50 | -8.615850e-47 |
| Msa0450000 | Msa0833290 | 0.839271 | 1.750440e-57 | -8.615850e-47 |
| Msa0451730 | Msa0833290 | 0.803677 | 3.110078e-49 | -8.615850e-47 |
| Msa0452900 | Msa0833290 | 0.869652 | 2.636762e-66 | -8.615850e-47 |
| Msa0453120 | Msa0833290 | 0.846268 | 2.416544e-59 | -8.615850e-47 |
| Msa0454370 | Msa0833290 | 0.806160 | 9.415389e-50 | -8.615850e-47 |
| Msa0454910 | Msa0833290 | 0.813074 | 3.076620e-51 | -8.615850e-47 |
| Msa0459160 | Msa0833290 | 0.838649 | 2.537181e-57 | -8.615850e-47 |
| Msa0479340 | Msa0833290 | 0.806281 | 8.877346e-50 | -8.615850e-47 |
| Msa0251320 | Msa0833290 | 0.815150 | 1.071495e-51 | -8.615850e-47 |
| Msa0267000 | Msa0833290 | 0.853842 | 1.829182e-61 | -8.615850e-47 |
| Msa0267010 | Msa0833290 | 0.861015 | 1.380600e-63 | -8.615850e-47 |
| Msa0270520 | Msa0833290 | 0.831969 | 1.235059e-55 | -8.615850e-47 |
| Msa0290870 | Msa0833290 | 0.817908 | 2.583946e-52 | -8.615850e-47 |
| Msa0309020 | Msa0833290 | 0.833537 | 5.038105e-56 | -8.615850e-47 |
| Msa0313760 | Msa0833290 | 0.802747 | 4.844666e-49 | -8.615850e-47 |
| Msa0321310 | Msa0833290 | 0.801029 | 1.091914e-48 | -8.615850e-47 |
| Msa0342240 | Msa0833290 | 0.849097 | 4.023015e-60 | -8.615850e-47 |
| Msa0355220 | Msa0833290 | 0.805599 | 1.234878e-49 | -8.615850e-47 |
| Msa0357680 | Msa0833290 | 0.804429 | 2.169965e-49 | -8.615850e-47 |
| Msa0360510 | Msa0833290 | 0.856256 | 3.637989e-62 | -8.615850e-47 |
| Msa0363750 | Msa0833290 | 0.805534 | 1.274164e-49 | -8.615850e-47 |
| Msa0491590 | Msa0833290 | 0.815675 | 8.188011e-52 | -8.615850e-47 |
| Msa0505080 | Msa0833290 | 0.800055 | 1.724479e-48 | -8.615850e-47 |
| Msa0506270 | Msa0833290 | 0.823903 | 1.077832e-53 | -8.615850e-47 |
| Msa0534540 | Msa0833290 | 0.837448 | 5.167042e-57 | -8.615850e-47 |
| Msa0564890 | Msa0833290 | 0.859866 | 3.075363e-63 | -8.615850e-47 |
| Msa0596150 | Msa0833290 | 0.809988 | 1.440916e-50 | -8.615850e-47 |
| Msa0598780 | Msa0833290 | 0.826471 | 2.663636e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0833290 | MtrunA17_Chr5g0398601 | 77.358 | 106 | 24 | 0 | 19 | 124 | 1 | 106 | 2.60e-47 | 161 |
| Msa0833290 | MtrunA17_Chr5g0398621 | 92.754 | 69 | 5 | 0 | 94 | 162 | 86 | 154 | 1.27e-38 | 132 |
| Msa0833290 | MtrunA17_Chr5g0398621 | 62.887 | 97 | 26 | 3 | 3 | 94 | 153 | 244 | 4.59e-28 | 105 |
| Msa0833290 | MtrunA17_Chr5g0398591 | 58.763 | 97 | 37 | 1 | 1 | 97 | 9 | 102 | 3.98e-29 | 104 |
| Msa0833290 | MtrunA17_Chr4g0056761 | 36.620 | 142 | 79 | 3 | 19 | 160 | 69 | 199 | 3.99e-21 | 88.6 |
| Msa0833290 | MtrunA17_Chr4g0056761 | 51.546 | 97 | 41 | 1 | 2 | 92 | 195 | 291 | 1.94e-11 | 61.2 |
| Msa0833290 | MtrunA17_Chr7g0245841 | 42.609 | 115 | 57 | 2 | 49 | 162 | 78 | 184 | 1.14e-19 | 84.3 |
| Msa0833290 | MtrunA17_Chr7g0245841 | 48.571 | 105 | 45 | 3 | 2 | 97 | 178 | 282 | 2.46e-13 | 67.0 |
| Msa0833290 | MtrunA17_Chr1g0179461 | 40.217 | 92 | 50 | 1 | 3 | 89 | 198 | 289 | 7.13e-18 | 79.7 |
| Msa0833290 | MtrunA17_Chr1g0179461 | 45.205 | 73 | 39 | 1 | 91 | 162 | 131 | 203 | 2.02e-14 | 70.1 |
| Msa0833290 | MtrunA17_Chr8g0351761 | 47.826 | 69 | 36 | 0 | 94 | 162 | 131 | 199 | 3.73e-16 | 75.1 |
| Msa0833290 | MtrunA17_Chr8g0351761 | 50.575 | 87 | 36 | 2 | 2 | 81 | 193 | 279 | 1.21e-12 | 65.1 |
| Msa0833290 | MtrunA17_Chr7g0247431 | 41.860 | 86 | 44 | 2 | 2 | 81 | 208 | 293 | 3.98e-15 | 72.0 |
| Msa0833290 | MtrunA17_Chr1g0190011 | 54.839 | 62 | 26 | 1 | 2 | 61 | 161 | 222 | 1.96e-14 | 70.1 |
| Msa0833290 | MtrunA17_Chr6g0476061 | 45.977 | 87 | 40 | 2 | 5 | 86 | 184 | 268 | 2.96e-14 | 69.3 |
| Msa0833290 | MtrunA17_Chr1g0188211 | 47.312 | 93 | 44 | 1 | 2 | 89 | 184 | 276 | 4.97e-14 | 68.9 |
| Msa0833290 | MtrunA17_Chr1g0188211 | 51.515 | 66 | 31 | 1 | 97 | 162 | 126 | 190 | 3.39e-12 | 63.5 |
| Msa0833290 | MtrunA17_Chr8g0386741 | 39.130 | 69 | 42 | 0 | 94 | 162 | 155 | 223 | 2.71e-13 | 66.6 |
| Msa0833290 | MtrunA17_Chr8g0386741 | 36.522 | 115 | 62 | 4 | 1 | 105 | 216 | 329 | 6.76e-11 | 60.1 |
| Msa0833290 | MtrunA17_Chr4g0027331 | 41.176 | 68 | 39 | 1 | 94 | 160 | 8 | 75 | 4.71e-12 | 60.5 |
| Msa0833290 | MtrunA17_Chr4g0027351 | 42.647 | 68 | 38 | 1 | 94 | 160 | 8 | 75 | 6.24e-12 | 60.5 |
| Msa0833290 | MtrunA17_Chr5g0397551 | 45.000 | 80 | 37 | 3 | 1 | 75 | 184 | 261 | 1.98e-11 | 61.2 |
| Msa0833290 | MtrunA17_Chr4g0054661 | 42.466 | 73 | 40 | 2 | 89 | 160 | 125 | 196 | 2.22e-11 | 61.2 |
| Msa0833290 | MtrunA17_Chr8g0349091 | 39.130 | 69 | 42 | 0 | 94 | 162 | 144 | 212 | 2.61e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0833290 | AT4G12080.1 | 52.041 | 98 | 40 | 3 | 2 | 93 | 221 | 317 | 2.15e-21 | 89.7 |
| Msa0833290 | AT4G12080.1 | 53.425 | 73 | 34 | 0 | 90 | 162 | 155 | 227 | 1.35e-19 | 84.7 |
| Msa0833290 | AT4G22770.2 | 39.535 | 129 | 75 | 2 | 34 | 162 | 82 | 207 | 1.52e-18 | 81.6 |
| Msa0833290 | AT4G22770.1 | 39.535 | 129 | 75 | 2 | 34 | 162 | 82 | 207 | 1.52e-18 | 81.6 |
| Msa0833290 | AT4G25320.1 | 39.535 | 129 | 73 | 2 | 36 | 162 | 98 | 223 | 4.97e-18 | 80.9 |
| Msa0833290 | AT4G25320.1 | 46.575 | 73 | 34 | 1 | 2 | 69 | 217 | 289 | 1.05e-14 | 71.2 |
| Msa0833290 | AT4G00200.2 | 55.000 | 60 | 27 | 0 | 103 | 162 | 121 | 180 | 4.33e-17 | 77.4 |
| Msa0833290 | AT4G00200.1 | 55.000 | 60 | 27 | 0 | 103 | 162 | 121 | 180 | 4.33e-17 | 77.4 |
| Msa0833290 | AT5G62260.1 | 48.718 | 78 | 35 | 1 | 2 | 74 | 211 | 288 | 6.68e-17 | 77.8 |
| Msa0833290 | AT5G62260.1 | 48.485 | 66 | 34 | 0 | 97 | 162 | 152 | 217 | 7.20e-14 | 68.9 |
| Msa0833290 | AT5G62260.3 | 48.718 | 78 | 35 | 1 | 2 | 74 | 211 | 288 | 6.68e-17 | 77.8 |
| Msa0833290 | AT5G62260.3 | 48.485 | 66 | 34 | 0 | 97 | 162 | 152 | 217 | 7.20e-14 | 68.9 |
| Msa0833290 | AT5G51590.1 | 52.857 | 70 | 33 | 0 | 91 | 160 | 164 | 233 | 2.76e-16 | 75.9 |
| Msa0833290 | AT5G51590.1 | 53.731 | 67 | 26 | 1 | 2 | 63 | 229 | 295 | 2.18e-15 | 73.6 |
| Msa0833290 | AT2G45850.3 | 37.634 | 93 | 54 | 1 | 90 | 178 | 147 | 239 | 8.71e-16 | 73.6 |
| Msa0833290 | AT2G45850.1 | 37.634 | 93 | 54 | 1 | 90 | 178 | 147 | 239 | 2.22e-15 | 73.2 |
| Msa0833290 | AT2G45850.1 | 39.560 | 91 | 49 | 2 | 2 | 87 | 213 | 302 | 4.16e-13 | 66.6 |
| Msa0833290 | AT2G45850.2 | 37.634 | 93 | 54 | 1 | 90 | 178 | 147 | 239 | 2.22e-15 | 73.2 |
| Msa0833290 | AT2G45850.2 | 39.560 | 91 | 49 | 2 | 2 | 87 | 213 | 302 | 4.16e-13 | 66.6 |
| Msa0833290 | AT3G61310.1 | 42.254 | 71 | 41 | 0 | 90 | 160 | 149 | 219 | 4.01e-15 | 72.4 |
| Msa0833290 | AT2G33620.1 | 48.649 | 74 | 33 | 1 | 2 | 70 | 214 | 287 | 2.21e-14 | 70.5 |
| Msa0833290 | AT2G33620.1 | 41.558 | 77 | 42 | 1 | 89 | 162 | 144 | 220 | 2.61e-12 | 64.3 |
| Msa0833290 | AT2G33620.4 | 48.649 | 74 | 33 | 1 | 2 | 70 | 214 | 287 | 2.21e-14 | 70.5 |
| Msa0833290 | AT2G33620.4 | 41.558 | 77 | 42 | 1 | 89 | 162 | 144 | 220 | 2.61e-12 | 64.3 |
| Msa0833290 | AT2G33620.2 | 48.649 | 74 | 33 | 1 | 2 | 70 | 214 | 287 | 2.21e-14 | 70.5 |
| Msa0833290 | AT2G33620.2 | 41.558 | 77 | 42 | 1 | 89 | 162 | 144 | 220 | 2.61e-12 | 64.3 |
| Msa0833290 | AT2G33620.3 | 48.649 | 74 | 33 | 1 | 2 | 70 | 214 | 287 | 2.21e-14 | 70.5 |
| Msa0833290 | AT2G33620.3 | 41.558 | 77 | 42 | 1 | 89 | 162 | 144 | 220 | 2.61e-12 | 64.3 |
| Msa0833290 | AT4G17950.1 | 45.263 | 95 | 43 | 3 | 2 | 91 | 274 | 364 | 2.83e-14 | 70.1 |
| Msa0833290 | AT5G62260.2 | 48.485 | 66 | 34 | 0 | 97 | 162 | 152 | 217 | 5.05e-14 | 68.9 |
| Msa0833290 | AT5G62260.2 | 44.304 | 79 | 35 | 2 | 2 | 75 | 211 | 285 | 4.90e-13 | 66.2 |
| Msa0833290 | AT1G63480.2 | 40.299 | 67 | 40 | 0 | 94 | 160 | 149 | 215 | 6.66e-13 | 66.2 |
| Msa0833290 | AT1G63480.1 | 40.299 | 67 | 40 | 0 | 94 | 160 | 149 | 215 | 6.66e-13 | 66.2 |
| Msa0833290 | AT1G63480.5 | 40.299 | 67 | 40 | 0 | 94 | 160 | 143 | 209 | 7.27e-13 | 65.9 |
| Msa0833290 | AT1G63480.7 | 40.299 | 67 | 40 | 0 | 94 | 160 | 143 | 209 | 7.27e-13 | 65.9 |
| Msa0833290 | AT1G63480.4 | 40.299 | 67 | 40 | 0 | 94 | 160 | 143 | 209 | 7.27e-13 | 65.9 |
| Msa0833290 | AT1G63480.3 | 40.299 | 67 | 40 | 0 | 94 | 160 | 143 | 209 | 7.27e-13 | 65.9 |
| Msa0833290 | AT1G63480.6 | 40.299 | 67 | 40 | 0 | 94 | 160 | 143 | 209 | 7.27e-13 | 65.9 |
| Msa0833290 | AT3G04590.2 | 38.384 | 99 | 57 | 3 | 2 | 98 | 222 | 318 | 2.44e-12 | 64.7 |
| Msa0833290 | AT5G46640.1 | 39.474 | 76 | 44 | 1 | 89 | 162 | 162 | 237 | 1.26e-11 | 62.4 |
| Msa0833290 | AT3G04590.1 | 41.176 | 68 | 38 | 1 | 3 | 68 | 223 | 290 | 1.48e-11 | 62.0 |
| Msa0833290 | AT1G63470.1 | 51.515 | 66 | 26 | 2 | 2 | 62 | 228 | 292 | 1.59e-11 | 62.4 |
| Msa0833290 | AT2G36560.1 | 43.662 | 71 | 36 | 1 | 105 | 171 | 105 | 175 | 2.62e-11 | 61.6 |
Find 30 sgRNAs with CRISPR-Local
Find 136 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATGAAATTATATCTTTATT+TGG | 0.137104 | 5_4:+6481796 | Msa0833290:CDS |
| AATAATGTCAATTGAATTTC+AGG | 0.157826 | 5_4:+6481768 | None:intergenic |
| TTCCAGGTACTTACATTTAC+AGG | 0.203699 | 5_4:-6481928 | None:intergenic |
| CCACATTAGTACATTGAATT+AGG | 0.226363 | 5_4:-6483041 | None:intergenic |
| GATAGAATGCATATGGCTTC+TGG | 0.380389 | 5_4:-6482900 | None:intergenic |
| GTTTCTTTAGCGGGTCTAGA+TGG | 0.404137 | 5_4:+6481859 | Msa0833290:CDS |
| ATCGTTGGAGGTTGCGTAGC+TGG | 0.408342 | 5_4:+6481886 | Msa0833290:CDS |
| CCACCACTGCGACTTTCGTT+TGG | 0.412733 | 5_4:-6481829 | None:intergenic |
| GGTATGAGTGTTTCTTTAGC+GGG | 0.447972 | 5_4:+6481850 | Msa0833290:CDS |
| TAACTGAGCTTGCAAGCAAT+TGG | 0.450726 | 5_4:-6482582 | None:intergenic |
| ATTCACAGATAGAATGCATA+TGG | 0.464355 | 5_4:-6482907 | None:intergenic |
| TCGAACATTATTCACGTATG+AGG | 0.511504 | 5_4:+6482971 | Msa0833290:CDS |
| ATAATGTCAATTGAATTTCA+GGG | 0.511669 | 5_4:+6481769 | None:intergenic |
| GATGCTCCCGTGTCTACTGC+TGG | 0.518304 | 5_4:+6482287 | Msa0833290:CDS |
| AATAATGTTCGAGACGATTG+AGG | 0.525993 | 5_4:-6482960 | None:intergenic |
| ATATGCATTCTATCTGTGAA+TGG | 0.536186 | 5_4:+6482909 | Msa0833290:CDS |
| GCATTCACAATGAAAATATG+AGG | 0.537005 | 5_4:-6482619 | None:intergenic |
| TGGTATGAGTGTTTCTTTAG+CGG | 0.540533 | 5_4:+6481849 | Msa0833290:CDS |
| ACAGGACTTGCAGCTACCAA+TGG | 0.547952 | 5_4:-6481910 | None:intergenic |
| GGTCTAGATGGACATATCGT+TGG | 0.556357 | 5_4:+6481871 | Msa0833290:CDS |
| CTAGATGGACATATCGTTGG+AGG | 0.567496 | 5_4:+6481874 | Msa0833290:CDS |
| GACACGGGAGCATCTGCCGT+TGG | 0.568071 | 5_4:-6482278 | None:intergenic |
| TTTCATTGTGAATGCTGGAG+AGG | 0.570869 | 5_4:+6482627 | Msa0833290:CDS |
| AGGTTGCGTAGCTGGTCCAT+TGG | 0.577220 | 5_4:+6481894 | Msa0833290:CDS |
| TATCAAAAGCAGTCATTAGT+CGG | 0.588120 | 5_4:+6482937 | Msa0833290:CDS |
| GACTTCAACGTCAATGCCAA+CGG | 0.603268 | 5_4:+6482262 | Msa0833290:CDS |
| TATTGTACCAGCAGTAGACA+CGG | 0.609633 | 5_4:-6482294 | None:intergenic |
| CCAAACGAAAGTCGCAGTGG+TGG | 0.623451 | 5_4:+6481829 | Msa0833290:CDS |
| ATTGTACCAGCAGTAGACAC+GGG | 0.698737 | 5_4:-6482293 | None:intergenic |
| GTGCCAAACGAAAGTCGCAG+TGG | 0.704907 | 5_4:+6481826 | Msa0833290:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATGAAATTATATCTTTATT+TGG | + | chr5_4:6481796-6481815 | Msa0833290:CDS | 10.0% |
| !! | ATTAATATATATCAAGTTAT+TGG | + | chr5_4:6482445-6482464 | Msa0833290:intron | 10.0% |
| !! | TATCTAATTATGAATATTAT+GGG | - | chr5_4:6482697-6482716 | None:intergenic | 10.0% |
| !! | TTATCTAATTATGAATATTA+TGG | - | chr5_4:6482698-6482717 | None:intergenic | 10.0% |
| !! | TATGAAATTATATCTTTATT+TGG | + | chr5_4:6481796-6481815 | Msa0833290:CDS | 10.0% |
| !! | ATTAATATATATCAAGTTAT+TGG | + | chr5_4:6482445-6482464 | Msa0833290:intron | 10.0% |
| !! | TATCTAATTATGAATATTAT+GGG | - | chr5_4:6482697-6482716 | None:intergenic | 10.0% |
| !! | TTATCTAATTATGAATATTA+TGG | - | chr5_4:6482698-6482717 | None:intergenic | 10.0% |
| !!! | TATATCTTGATATTTTTAAC+TGG | + | chr5_4:6482725-6482744 | Msa0833290:intron | 15.0% |
| !!! | TATATCTTGATATTTTTAAC+TGG | + | chr5_4:6482725-6482744 | Msa0833290:intron | 15.0% |
| !! | AATATATATCAAGTTATTGG+TGG | + | chr5_4:6482448-6482467 | Msa0833290:intron | 20.0% |
| !! | TTATATCTTAAATTGATGCA+AGG | - | chr5_4:6482475-6482494 | None:intergenic | 20.0% |
| !! | TAAGATATAAGTGTAAATGT+TGG | + | chr5_4:6482485-6482504 | Msa0833290:intron | 20.0% |
| !! | AATATATATCAAGTTATTGG+TGG | + | chr5_4:6482448-6482467 | Msa0833290:intron | 20.0% |
| !! | TTATATCTTAAATTGATGCA+AGG | - | chr5_4:6482475-6482494 | None:intergenic | 20.0% |
| !! | TAAGATATAAGTGTAAATGT+TGG | + | chr5_4:6482485-6482504 | Msa0833290:intron | 20.0% |
| !!! | GAATAGTGTATTTTGTTGTT+TGG | + | chr5_4:6482404-6482423 | Msa0833290:intron | 25.0% |
| ! | TGATGACTAATCAGAATAAA+TGG | + | chr5_4:6482811-6482830 | Msa0833290:intron | 25.0% |
| !!! | GAATAGTGTATTTTGTTGTT+TGG | + | chr5_4:6482404-6482423 | Msa0833290:intron | 25.0% |
| ! | TGATGACTAATCAGAATAAA+TGG | + | chr5_4:6482811-6482830 | Msa0833290:intron | 25.0% |
| TAAATGTAAGTACCTGGAAA+GGG | + | chr5_4:6481932-6481951 | Msa0833290:intron | 30.0% | |
| ATACTAAAACACCAATTAGC+AGG | + | chr5_4:6481981-6482000 | Msa0833290:intron | 30.0% | |
| ATTCTCATTACTCTTTCCAA+TGG | + | chr5_4:6482156-6482175 | Msa0833290:intron | 30.0% | |
| !!! | AAGTGCTTTCTTTTTTTCTC+AGG | + | chr5_4:6482559-6482578 | Msa0833290:intron | 30.0% |
| GCATTCACAATGAAAATATG+AGG | - | chr5_4:6482622-6482641 | None:intergenic | 30.0% | |
| ! | CATATTTTCATTGTGAATGC+TGG | + | chr5_4:6482622-6482641 | Msa0833290:CDS | 30.0% |
| !!! | GGAGAGGTAATATCATTTTT+TGG | + | chr5_4:6482643-6482662 | Msa0833290:intron | 30.0% |
| !!! | ATAATGTCATTTTGTCAGCA+AGG | + | chr5_4:6482876-6482895 | Msa0833290:CDS | 30.0% |
| ATTCACAGATAGAATGCATA+TGG | - | chr5_4:6482910-6482929 | None:intergenic | 30.0% | |
| ATATGCATTCTATCTGTGAA+TGG | + | chr5_4:6482909-6482928 | Msa0833290:CDS | 30.0% | |
| TATCAAAAGCAGTCATTAGT+CGG | + | chr5_4:6482937-6482956 | Msa0833290:CDS | 30.0% | |
| TAAATGTAAGTACCTGGAAA+GGG | + | chr5_4:6481932-6481951 | Msa0833290:intron | 30.0% | |
| ATACTAAAACACCAATTAGC+AGG | + | chr5_4:6481981-6482000 | Msa0833290:intron | 30.0% | |
| ATTCTCATTACTCTTTCCAA+TGG | + | chr5_4:6482156-6482175 | Msa0833290:intron | 30.0% | |
| !!! | AAGTGCTTTCTTTTTTTCTC+AGG | + | chr5_4:6482559-6482578 | Msa0833290:intron | 30.0% |
| GCATTCACAATGAAAATATG+AGG | - | chr5_4:6482622-6482641 | None:intergenic | 30.0% | |
| ! | CATATTTTCATTGTGAATGC+TGG | + | chr5_4:6482622-6482641 | Msa0833290:CDS | 30.0% |
| !!! | GGAGAGGTAATATCATTTTT+TGG | + | chr5_4:6482643-6482662 | Msa0833290:intron | 30.0% |
| !!! | ATAATGTCATTTTGTCAGCA+AGG | + | chr5_4:6482876-6482895 | Msa0833290:CDS | 30.0% |
| ATTCACAGATAGAATGCATA+TGG | - | chr5_4:6482910-6482929 | None:intergenic | 30.0% | |
| ATATGCATTCTATCTGTGAA+TGG | + | chr5_4:6482909-6482928 | Msa0833290:CDS | 30.0% | |
| TATCAAAAGCAGTCATTAGT+CGG | + | chr5_4:6482937-6482956 | Msa0833290:CDS | 30.0% | |
| TGGTATGAGTGTTTCTTTAG+CGG | + | chr5_4:6481849-6481868 | Msa0833290:CDS | 35.0% | |
| TTCCAGGTACTTACATTTAC+AGG | - | chr5_4:6481931-6481950 | None:intergenic | 35.0% | |
| GTAAATGTAAGTACCTGGAA+AGG | + | chr5_4:6481931-6481950 | Msa0833290:intron | 35.0% | |
| TACCTGGAAAGGGAATAATA+GGG | + | chr5_4:6481942-6481961 | Msa0833290:intron | 35.0% | |
| GATTTAAGCATCCTGCTAAT+TGG | - | chr5_4:6481995-6482014 | None:intergenic | 35.0% | |
| ATAGTAGCAATTTCGTTAGC+AGG | - | chr5_4:6482077-6482096 | None:intergenic | 35.0% | |
| GTAGTAAAACGCAAACTTTG+TGG | + | chr5_4:6482104-6482123 | Msa0833290:intron | 35.0% | |
| CCTGATACATATCAATCCAT+TGG | - | chr5_4:6482175-6482194 | None:intergenic | 35.0% | |
| !! | CCAATGGATTGATATGTATC+AGG | + | chr5_4:6482172-6482191 | Msa0833290:intron | 35.0% |
| GATTGATATGTATCAGGTAG+TGG | + | chr5_4:6482178-6482197 | Msa0833290:intron | 35.0% | |
| GTATTTGTTTCCGTTATCAC+TGG | + | chr5_4:6482786-6482805 | Msa0833290:intron | 35.0% | |
| AGTCATCATTCCAGTGATAA+CGG | - | chr5_4:6482799-6482818 | None:intergenic | 35.0% | |
| !! | ACTTGTCTTTTGATTGTCTC+AGG | + | chr5_4:6482839-6482858 | Msa0833290:intron | 35.0% |
| AATAATGTTCGAGACGATTG+AGG | - | chr5_4:6482963-6482982 | None:intergenic | 35.0% | |
| TCGAACATTATTCACGTATG+AGG | + | chr5_4:6482971-6482990 | Msa0833290:CDS | 35.0% | |
| TGGTATGAGTGTTTCTTTAG+CGG | + | chr5_4:6481849-6481868 | Msa0833290:CDS | 35.0% | |
| TTCCAGGTACTTACATTTAC+AGG | - | chr5_4:6481931-6481950 | None:intergenic | 35.0% | |
| GTAAATGTAAGTACCTGGAA+AGG | + | chr5_4:6481931-6481950 | Msa0833290:intron | 35.0% | |
| TACCTGGAAAGGGAATAATA+GGG | + | chr5_4:6481942-6481961 | Msa0833290:intron | 35.0% | |
| GATTTAAGCATCCTGCTAAT+TGG | - | chr5_4:6481995-6482014 | None:intergenic | 35.0% | |
| ATAGTAGCAATTTCGTTAGC+AGG | - | chr5_4:6482077-6482096 | None:intergenic | 35.0% | |
| GTAGTAAAACGCAAACTTTG+TGG | + | chr5_4:6482104-6482123 | Msa0833290:intron | 35.0% | |
| CCTGATACATATCAATCCAT+TGG | - | chr5_4:6482175-6482194 | None:intergenic | 35.0% | |
| !! | CCAATGGATTGATATGTATC+AGG | + | chr5_4:6482172-6482191 | Msa0833290:intron | 35.0% |
| GATTGATATGTATCAGGTAG+TGG | + | chr5_4:6482178-6482197 | Msa0833290:intron | 35.0% | |
| GTATTTGTTTCCGTTATCAC+TGG | + | chr5_4:6482786-6482805 | Msa0833290:intron | 35.0% | |
| AGTCATCATTCCAGTGATAA+CGG | - | chr5_4:6482799-6482818 | None:intergenic | 35.0% | |
| !! | ACTTGTCTTTTGATTGTCTC+AGG | + | chr5_4:6482839-6482858 | Msa0833290:intron | 35.0% |
| AATAATGTTCGAGACGATTG+AGG | - | chr5_4:6482963-6482982 | None:intergenic | 35.0% | |
| TCGAACATTATTCACGTATG+AGG | + | chr5_4:6482971-6482990 | Msa0833290:CDS | 35.0% | |
| GGTATGAGTGTTTCTTTAGC+GGG | + | chr5_4:6481850-6481869 | Msa0833290:CDS | 40.0% | |
| GTCCTGTAAATGTAAGTACC+TGG | + | chr5_4:6481926-6481945 | Msa0833290:intron | 40.0% | |
| GTACCTGGAAAGGGAATAAT+AGG | + | chr5_4:6481941-6481960 | Msa0833290:intron | 40.0% | |
| ! | GTTTGCGTTTTACTACACAC+TGG | - | chr5_4:6482100-6482119 | None:intergenic | 40.0% |
| GCTAAAAACGCAGGAAAATG+AGG | + | chr5_4:6482238-6482257 | Msa0833290:CDS | 40.0% | |
| TATTGTACCAGCAGTAGACA+CGG | - | chr5_4:6482297-6482316 | None:intergenic | 40.0% | |
| GGAAGATGAAGATGAGAGTT+AGG | - | chr5_4:6482320-6482339 | None:intergenic | 40.0% | |
| TCATCTTCATCTTCCTTCCA+CGG | + | chr5_4:6482325-6482344 | Msa0833290:intron | 40.0% | |
| AAGAAAGAGAATCATCTCCG+TGG | - | chr5_4:6482345-6482364 | None:intergenic | 40.0% | |
| TTGTGATCATGCGAGTTTCA+TGG | + | chr5_4:6482364-6482383 | Msa0833290:intron | 40.0% | |
| TAACTGAGCTTGCAAGCAAT+TGG | - | chr5_4:6482585-6482604 | None:intergenic | 40.0% | |
| TTTCATTGTGAATGCTGGAG+AGG | + | chr5_4:6482627-6482646 | Msa0833290:CDS | 40.0% | |
| GATAGAATGCATATGGCTTC+TGG | - | chr5_4:6482903-6482922 | None:intergenic | 40.0% | |
| GGTATGAGTGTTTCTTTAGC+GGG | + | chr5_4:6481850-6481869 | Msa0833290:CDS | 40.0% | |
| GTCCTGTAAATGTAAGTACC+TGG | + | chr5_4:6481926-6481945 | Msa0833290:intron | 40.0% | |
| GTACCTGGAAAGGGAATAAT+AGG | + | chr5_4:6481941-6481960 | Msa0833290:intron | 40.0% | |
| ! | GTTTGCGTTTTACTACACAC+TGG | - | chr5_4:6482100-6482119 | None:intergenic | 40.0% |
| GCTAAAAACGCAGGAAAATG+AGG | + | chr5_4:6482238-6482257 | Msa0833290:CDS | 40.0% | |
| TATTGTACCAGCAGTAGACA+CGG | - | chr5_4:6482297-6482316 | None:intergenic | 40.0% | |
| GGAAGATGAAGATGAGAGTT+AGG | - | chr5_4:6482320-6482339 | None:intergenic | 40.0% | |
| TCATCTTCATCTTCCTTCCA+CGG | + | chr5_4:6482325-6482344 | Msa0833290:intron | 40.0% | |
| AAGAAAGAGAATCATCTCCG+TGG | - | chr5_4:6482345-6482364 | None:intergenic | 40.0% | |
| TTGTGATCATGCGAGTTTCA+TGG | + | chr5_4:6482364-6482383 | Msa0833290:intron | 40.0% | |
| TAACTGAGCTTGCAAGCAAT+TGG | - | chr5_4:6482585-6482604 | None:intergenic | 40.0% | |
| TTTCATTGTGAATGCTGGAG+AGG | + | chr5_4:6482627-6482646 | Msa0833290:CDS | 40.0% | |
| GATAGAATGCATATGGCTTC+TGG | - | chr5_4:6482903-6482922 | None:intergenic | 40.0% | |
| ! | GTTTCTTTAGCGGGTCTAGA+TGG | + | chr5_4:6481859-6481878 | Msa0833290:CDS | 45.0% |
| GGTCTAGATGGACATATCGT+TGG | + | chr5_4:6481871-6481890 | Msa0833290:CDS | 45.0% | |
| CTAGATGGACATATCGTTGG+AGG | + | chr5_4:6481874-6481893 | Msa0833290:CDS | 45.0% | |
| AGCCCTATTATTCCCTTTCC+AGG | - | chr5_4:6481947-6481966 | None:intergenic | 45.0% | |
| !! | GGTAGTGGTAAGCAGTTTTC+TGG | + | chr5_4:6482193-6482212 | Msa0833290:intron | 45.0% |
| TGAGCAGAAGCTAAAAACGC+AGG | + | chr5_4:6482229-6482248 | Msa0833290:CDS | 45.0% | |
| GACTTCAACGTCAATGCCAA+CGG | + | chr5_4:6482262-6482281 | Msa0833290:CDS | 45.0% | |
| ATTGTACCAGCAGTAGACAC+GGG | - | chr5_4:6482296-6482315 | None:intergenic | 45.0% | |
| AAGAGAATCATCTCCGTGGA+AGG | - | chr5_4:6482341-6482360 | None:intergenic | 45.0% | |
| TCATGCGAGTTTCATGGTTG+TGG | + | chr5_4:6482370-6482389 | Msa0833290:intron | 45.0% | |
| ! | GTTTCTTTAGCGGGTCTAGA+TGG | + | chr5_4:6481859-6481878 | Msa0833290:CDS | 45.0% |
| GGTCTAGATGGACATATCGT+TGG | + | chr5_4:6481871-6481890 | Msa0833290:CDS | 45.0% | |
| CTAGATGGACATATCGTTGG+AGG | + | chr5_4:6481874-6481893 | Msa0833290:CDS | 45.0% | |
| AGCCCTATTATTCCCTTTCC+AGG | - | chr5_4:6481947-6481966 | None:intergenic | 45.0% | |
| !! | GGTAGTGGTAAGCAGTTTTC+TGG | + | chr5_4:6482193-6482212 | Msa0833290:intron | 45.0% |
| TGAGCAGAAGCTAAAAACGC+AGG | + | chr5_4:6482229-6482248 | Msa0833290:CDS | 45.0% | |
| GACTTCAACGTCAATGCCAA+CGG | + | chr5_4:6482262-6482281 | Msa0833290:CDS | 45.0% | |
| ATTGTACCAGCAGTAGACAC+GGG | - | chr5_4:6482296-6482315 | None:intergenic | 45.0% | |
| AAGAGAATCATCTCCGTGGA+AGG | - | chr5_4:6482341-6482360 | None:intergenic | 45.0% | |
| TCATGCGAGTTTCATGGTTG+TGG | + | chr5_4:6482370-6482389 | Msa0833290:intron | 45.0% | |
| ACAGGACTTGCAGCTACCAA+TGG | - | chr5_4:6481913-6481932 | None:intergenic | 50.0% | |
| TGCGAGTTTCATGGTTGTGG+AGG | + | chr5_4:6482373-6482392 | Msa0833290:intron | 50.0% | |
| ACAGGACTTGCAGCTACCAA+TGG | - | chr5_4:6481913-6481932 | None:intergenic | 50.0% | |
| TGCGAGTTTCATGGTTGTGG+AGG | + | chr5_4:6482373-6482392 | Msa0833290:intron | 50.0% | |
| GTGCCAAACGAAAGTCGCAG+TGG | + | chr5_4:6481826-6481845 | Msa0833290:CDS | 55.0% | |
| CCACCACTGCGACTTTCGTT+TGG | - | chr5_4:6481832-6481851 | None:intergenic | 55.0% | |
| CCAAACGAAAGTCGCAGTGG+TGG | + | chr5_4:6481829-6481848 | Msa0833290:CDS | 55.0% | |
| ATCGTTGGAGGTTGCGTAGC+TGG | + | chr5_4:6481886-6481905 | Msa0833290:CDS | 55.0% | |
| AGGTTGCGTAGCTGGTCCAT+TGG | + | chr5_4:6481894-6481913 | Msa0833290:CDS | 55.0% | |
| GTGCCAAACGAAAGTCGCAG+TGG | + | chr5_4:6481826-6481845 | Msa0833290:CDS | 55.0% | |
| CCACCACTGCGACTTTCGTT+TGG | - | chr5_4:6481832-6481851 | None:intergenic | 55.0% | |
| CCAAACGAAAGTCGCAGTGG+TGG | + | chr5_4:6481829-6481848 | Msa0833290:CDS | 55.0% | |
| ATCGTTGGAGGTTGCGTAGC+TGG | + | chr5_4:6481886-6481905 | Msa0833290:CDS | 55.0% | |
| AGGTTGCGTAGCTGGTCCAT+TGG | + | chr5_4:6481894-6481913 | Msa0833290:CDS | 55.0% | |
| GATGCTCCCGTGTCTACTGC+TGG | + | chr5_4:6482287-6482306 | Msa0833290:CDS | 60.0% | |
| GATGCTCCCGTGTCTACTGC+TGG | + | chr5_4:6482287-6482306 | Msa0833290:CDS | 60.0% | |
| !! | GACACGGGAGCATCTGCCGT+TGG | - | chr5_4:6482281-6482300 | None:intergenic | 65.0% |
| !! | GACACGGGAGCATCTGCCGT+TGG | - | chr5_4:6482281-6482300 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 6481772 | 6483058 | 6481772 | ID=Msa0833290;Name=Msa0833290 |
| chr5_4 | mRNA | 6481772 | 6483058 | 6481772 | ID=Msa0833290-mRNA-1;Parent=Msa0833290;Name=Msa0833290-mRNA-1;_AED=0.43;_eAED=0.49;_QI=0|0|0|1|1|1|4|0|181 |
| chr5_4 | exon | 6481772 | 6481936 | 6481772 | ID=Msa0833290-mRNA-1:exon:2817;Parent=Msa0833290-mRNA-1 |
| chr5_4 | exon | 6482194 | 6482308 | 6482194 | ID=Msa0833290-mRNA-1:exon:2818;Parent=Msa0833290-mRNA-1 |
| chr5_4 | exon | 6482581 | 6482648 | 6482581 | ID=Msa0833290-mRNA-1:exon:2819;Parent=Msa0833290-mRNA-1 |
| chr5_4 | exon | 6482861 | 6483058 | 6482861 | ID=Msa0833290-mRNA-1:exon:2820;Parent=Msa0833290-mRNA-1 |
| chr5_4 | CDS | 6481772 | 6481936 | 6481772 | ID=Msa0833290-mRNA-1:cds;Parent=Msa0833290-mRNA-1 |
| chr5_4 | CDS | 6482194 | 6482308 | 6482194 | ID=Msa0833290-mRNA-1:cds;Parent=Msa0833290-mRNA-1 |
| chr5_4 | CDS | 6482581 | 6482648 | 6482581 | ID=Msa0833290-mRNA-1:cds;Parent=Msa0833290-mRNA-1 |
| chr5_4 | CDS | 6482861 | 6483058 | 6482861 | ID=Msa0833290-mRNA-1:cds;Parent=Msa0833290-mRNA-1 |
| Gene Sequence |
| Protein sequence |
