AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0368630

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0368630 MtrunA17_Chr3g0112401 99.169 361 3 0 1 361 1 361 0.0 728
Msa0368630 MtrunA17_Chr5g0435771 93.075 361 25 0 1 361 1 361 0.0 686
Msa0368630 MtrunA17_Chr4g0076111 74.618 327 38 2 35 361 9 290 4.29e-171 478
Msa0368630 MtrunA17_Chr3g0118161 32.250 400 223 7 3 354 10 409 5.41e-64 209
Msa0368630 MtrunA17_Chr6g0451921 32.432 407 226 8 3 361 9 414 6.12e-63 206
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0368630 AT2G39770.2 90.859 361 33 0 1 361 1 361 0.0 679
Msa0368630 AT2G39770.3 90.859 361 33 0 1 361 1 361 0.0 679
Msa0368630 AT2G39770.1 90.859 361 33 0 1 361 1 361 0.0 679
Msa0368630 AT3G55590.1 83.516 364 57 1 1 361 1 364 0.0 627
Msa0368630 AT4G30570.1 76.596 329 76 1 21 348 1 329 0.0 517
Msa0368630 AT2G04650.1 32.570 393 224 7 3 354 8 400 1.27e-65 213
Msa0368630 AT2G04650.2 32.208 385 222 6 9 354 4 388 4.01e-65 212
Msa0368630 AT1G74910.2 31.034 406 232 8 3 361 11 415 4.81e-65 212
Msa0368630 AT1G74910.1 31.034 406 232 8 3 361 11 415 4.81e-65 212
Msa0368630 AT1G74910.3 30.411 365 216 6 3 329 11 375 3.34e-58 194

Find 142 sgRNAs with CRISPR-Local

Find 349 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGAATATGCCTTGTTTAT+TGG 0.092539 3_1:-65437010 None:intergenic
ATTCAATTGGAAGTTATTTA+TGG 0.139429 3_1:+65437106 Msa0368630:five_prime_UTR
ATTATTTGAGGTCACAAAAT+TGG 0.150473 3_1:+65441535 Msa0368630:three_prime_UTR
CCTTTCAACTTTATAAATTA+TGG 0.169583 3_1:-65441438 None:intergenic
GGCCAGTGGCCCTCACATTT+TGG 0.174139 3_1:+65440921 Msa0368630:CDS
TGTTCTCTTCCAGCCTTTCT+TGG 0.191543 3_1:+65439010 Msa0368630:intron
CTTCTTGACTCGTTCGAGTT+AGG 0.194509 3_1:+65437251 Msa0368630:five_prime_UTR
GAGACATCCCTCGCCAATTT+TGG 0.195747 3_1:-65440968 None:intergenic
CAATGGTTCTGCCTGGATTC+TGG 0.230745 3_1:+65440815 Msa0368630:CDS
TTGATTCTGGTTGGAGGGTT+TGG 0.231295 3_1:+65439091 Msa0368630:CDS
CACACTACATGCTAAGAATT+TGG 0.235614 3_1:-65441285 None:intergenic
CACAATGAAGGCATTGATTC+TGG 0.244864 3_1:+65439078 Msa0368630:exon
CGCCAAACCCTCAATTCTTC+AGG 0.259392 3_1:+65437287 Msa0368630:five_prime_UTR
CCTATTGAACCCCTCAGTTT+TGG 0.269147 3_1:+65440717 Msa0368630:CDS
TGTTACTTGAAGACTTAAAA+AGG 0.276415 3_1:+65437032 Msa0368630:five_prime_UTR
AATTACCTTTGTCACCATTA+TGG 0.298623 3_1:-65440503 None:intergenic
ACTCGATCGGTGCCACTAAA+AGG 0.303711 3_1:-65441579 None:intergenic
TTCTTGACTCGTTCGAGTTA+GGG 0.345159 3_1:+65437252 Msa0368630:five_prime_UTR
CACTGAAAATTACACAGCTT+TGG 0.355062 3_1:-65441493 None:intergenic
AAATATGTATTCATTTCATT+TGG 0.358212 3_1:+65441341 Msa0368630:three_prime_UTR
GTGCATGAGACAGCCAAAAT+TGG 0.360392 3_1:+65440955 Msa0368630:CDS
TTATTTGAGGTCACAAAATT+GGG 0.367629 3_1:+65441536 Msa0368630:three_prime_UTR
GTTGACGAGCCATCGAAATA+TGG 0.375253 3_1:+65440601 Msa0368630:CDS
TTTGCAGATAGAGGCTCTTA+AGG 0.376635 3_1:+65440106 Msa0368630:intron
TATAGTTATTCTAATTCAAT+TGG 0.378406 3_1:+65437093 Msa0368630:five_prime_UTR
GGCATTCAACTGTTGGTCAA+TGG 0.378871 3_1:+65441118 Msa0368630:CDS
GCATTCAACTGTTGGTCAAT+GGG 0.390410 3_1:+65441119 Msa0368630:CDS
CTTCTCCTCCATGAGATTTG+TGG 0.394590 3_1:-65440477 None:intergenic
GAAATATGGTGTAGTTGTTA+TGG 0.396468 3_1:+65440615 Msa0368630:CDS
CAAAATTGGGATTCTTTGAC+AGG 0.413907 3_1:+65441549 Msa0368630:three_prime_UTR
CCAAAACTGAGGGGTTCAAT+AGG 0.416025 3_1:-65440717 None:intergenic
CTCTCAAGAAACTGAACCAT+TGG 0.424571 3_1:+65440336 Msa0368630:CDS
AGCAAAATCAACAAGAGGCT+TGG 0.428162 3_1:-65439146 None:intergenic
AAAGAAACCTGAAGAATTGA+GGG 0.431335 3_1:-65437294 None:intergenic
AACCTGAAGAATTGAGGGTT+TGG 0.432730 3_1:-65437289 None:intergenic
ATTGGACCTGATGTTGCAAT+TGG 0.435688 3_1:+65440991 Msa0368630:CDS
CAAGCCCATGATTCTGCATC+AGG 0.436008 3_1:+65439171 Msa0368630:CDS
ATTGGGGACTGCAGGTCCCT+TGG 0.442280 3_1:+65440354 Msa0368630:CDS
CCCCAAAATGTGAGGGCCAC+TGG 0.444498 3_1:-65440923 None:intergenic
GAATTTCTTGAAGGACTTTG+AGG 0.444711 3_1:+65440288 Msa0368630:CDS
CCTGATGTTGCAATTGGTCC+TGG 0.445714 3_1:+65440997 Msa0368630:CDS
CAGCCAAGGGACTATATAAC+AGG 0.445775 3_1:+65440850 Msa0368630:CDS
GCCAGAGATAAGCTGATTGA+TGG 0.448757 3_1:+65440382 Msa0368630:CDS
AAAAGAAACCTGAAGAATTG+AGG 0.451583 3_1:-65437295 None:intergenic
GTGAGGGCCACTGGCCAACT+TGG 0.453022 3_1:-65440914 None:intergenic
TAGCCTCACATGACTATCTC+TGG 0.457298 3_1:-65441255 None:intergenic
GTTGGCAACAAAATCAATGC+TGG 0.457593 3_1:+65440688 Msa0368630:CDS
GCAAAATCAACAAGAGGCTT+GGG 0.462216 3_1:-65439145 None:intergenic
GTACTATTGAGTCAGGTGTC+AGG 0.462789 3_1:+65441022 Msa0368630:CDS
CCTTACCTGATGCAGAATCA+TGG 0.467053 3_1:-65439176 None:intergenic
TCTCAAGAAACTGAACCATT+GGG 0.467960 3_1:+65440337 Msa0368630:CDS
TTTGTTGCCAACAAACAACT+TGG 0.477074 3_1:-65440677 None:intergenic
ATTGGCGAGGGATGTCTCAT+TGG 0.477910 3_1:+65440973 Msa0368630:CDS
AATTCTATCATTTCTTTGAG+TGG 0.484489 3_1:-65440454 None:intergenic
GGTGATGTTGAATTTCTTGA+AGG 0.486495 3_1:+65440279 Msa0368630:intron
GCCATCAATCAGCTTATCTC+TGG 0.487352 3_1:-65440383 None:intergenic
GAGAAACCCAAGTTGTTTGT+TGG 0.488405 3_1:+65440670 Msa0368630:CDS
TGCATATCCAGCAGCATCAT+CGG 0.488487 3_1:+65441093 Msa0368630:CDS
CCTGGCTGTACTATTGAGTC+AGG 0.491456 3_1:+65441015 Msa0368630:CDS
TTGGGAACGCTGAGTGTCAA+TGG 0.493354 3_1:-65439127 None:intergenic
ACGATAGTATTGGTCAATGT+TGG 0.496606 3_1:-65437155 None:intergenic
ACCCACTTCTATTGAGAAAG+AGG 0.506248 3_1:+65440756 Msa0368630:CDS
TGGAGGAGAAGCTTCCATAA+TGG 0.508219 3_1:+65440489 Msa0368630:CDS
AATTGGAAGTTATTTATGGA+TGG 0.510192 3_1:+65437110 Msa0368630:five_prime_UTR
GCATATCCAGCAGCATCATC+GGG 0.514239 3_1:+65441094 Msa0368630:CDS
TGGTTGGAGGGTTTGGAACA+AGG 0.517924 3_1:+65439098 Msa0368630:CDS
GAGGGTTTGGAACAAGGTTG+AGG 0.519056 3_1:+65439104 Msa0368630:CDS
ATGAAGGCATTGATTCTGGT+TGG 0.520723 3_1:+65439082 Msa0368630:CDS
GAAGAAGACTTCTTCCAAGT+TGG 0.520882 3_1:+65440900 Msa0368630:CDS
ATCGGGTGGCATTCAACTGT+TGG 0.522221 3_1:+65441111 Msa0368630:CDS
CCTGGATTCTGGATGGACAT+TGG 0.522294 3_1:+65440826 Msa0368630:CDS
ATAGAATTCCACAAATCTCA+TGG 0.522477 3_1:+65440469 Msa0368630:CDS
CTATATGCAATGGTTCTGCC+TGG 0.525369 3_1:+65440808 Msa0368630:CDS
AACAGGTCTGAGACTCTACC+TGG 0.527965 3_1:+65440867 Msa0368630:CDS
CCAATGTCCATCCAGAATCC+AGG 0.528298 3_1:-65440826 None:intergenic
CCAGGACCAATTGCAACATC+AGG 0.528530 3_1:-65440997 None:intergenic
AACAAATTTCTCAACCTGCC+CGG 0.528886 3_1:-65440647 None:intergenic
ACTGAACCATTGGGGACTGC+AGG 0.534135 3_1:+65440346 Msa0368630:CDS
TCTTAGCATGTAGTGTGTCT+AGG 0.536433 3_1:+65441291 Msa0368630:three_prime_UTR
AGACCTGTTATATAGTCCCT+TGG 0.537146 3_1:-65440853 None:intergenic
CTTATCTCTGGCAAGAGCCA+AGG 0.538273 3_1:-65440371 None:intergenic
ATGCCACCCGATGATGCTGC+TGG 0.538528 3_1:-65441100 None:intergenic
TGGAGTTACTGAAGTGGTGC+TGG 0.539605 3_1:+65440133 Msa0368630:CDS
CAAAGGTCACATCACAATGA+AGG 0.540103 3_1:+65439066 Msa0368630:exon
GCACTGTAATGAGAGGAGTT+CGG 0.540270 3_1:+65441055 Msa0368630:CDS
CACCTCTTTCTCAATAGAAG+TGG 0.543517 3_1:-65440758 None:intergenic
TGTTGGTCAATGGGCTCGCG+TGG 0.545394 3_1:+65441128 Msa0368630:CDS
AGGCATTGATTCTGGTTGGA+GGG 0.546975 3_1:+65439086 Msa0368630:CDS
AAGGCATTGATTCTGGTTGG+AGG 0.548820 3_1:+65439085 Msa0368630:CDS
CTTGTTTATTGGACTATCGT+CGG 0.549459 3_1:-65436999 None:intergenic
TTTACAATGTGCGGGGAAGG+AGG 0.549974 3_1:-65441388 None:intergenic
TTGGCAACAAAATCAATGCT+GGG 0.556088 3_1:+65440689 Msa0368630:CDS
CCATAATTTATAAAGTTGAA+AGG 0.559634 3_1:+65441438 Msa0368630:three_prime_UTR
GTGGAGAATATGACTATCCT+TGG 0.561456 3_1:+65441147 Msa0368630:CDS
ATAGAGGCTCTTAAGGACAT+TGG 0.566425 3_1:+65440113 Msa0368630:CDS
TCTTCTTCCTGAGTGAGTCC+AGG 0.570610 3_1:-65440885 None:intergenic
TTATCTCTGGCAAGAGCCAA+GGG 0.571035 3_1:-65440370 None:intergenic
TCAATATGATCCAAAACTGA+GGG 0.571408 3_1:-65440727 None:intergenic
GACTCTACCTGGACTCACTC+AGG 0.571470 3_1:+65440878 Msa0368630:CDS
CTTACCTGATGCAGAATCAT+GGG 0.572676 3_1:-65439175 None:intergenic
CTACATGCTAAGAATTTGGA+AGG 0.578323 3_1:-65441281 None:intergenic
ACCTCTTTCTCAATAGAAGT+GGG 0.579545 3_1:-65440757 None:intergenic
ATGAGGTGTTACGATAGTAT+TGG 0.580339 3_1:-65437165 None:intergenic
TATGGAAGAGACTACCGGGC+AGG 0.580495 3_1:+65440633 Msa0368630:CDS
TTACAATGTGCGGGGAAGGA+GGG 0.581779 3_1:-65441387 None:intergenic
TTGTTGCCAACAAACAACTT+GGG 0.582555 3_1:-65440676 None:intergenic
GGTTCTGCCTGGATTCTGGA+TGG 0.583086 3_1:+65440819 Msa0368630:CDS
ATCACATTCCCCAAAATGTG+AGG 0.586656 3_1:-65440931 None:intergenic
TCAGTGTCTATGTAAAGAGT+TGG 0.587085 3_1:+65441461 Msa0368630:three_prime_UTR
AGCTTCCATAATGGTGACAA+AGG 0.594491 3_1:+65440498 Msa0368630:CDS
GGATGGACATTGGACAGCCA+AGG 0.596026 3_1:+65440836 Msa0368630:CDS
CGACGATAGTCCAATAAACA+AGG 0.605330 3_1:+65437000 Msa0368630:five_prime_UTR
TTCAATATGATCCAAAACTG+AGG 0.607441 3_1:-65440728 None:intergenic
GATGGACATTGGACAGCCAA+GGG 0.607762 3_1:+65440837 Msa0368630:CDS
TCAAGTTGCACTGTAATGAG+AGG 0.608923 3_1:+65441048 Msa0368630:CDS
AAGGGACCTGCAGTCCCCAA+TGG 0.610136 3_1:-65440352 None:intergenic
ACTTCTTCCAAGTTGGCCAG+TGG 0.612092 3_1:+65440907 Msa0368630:CDS
GTTGTTATGGAAGAGACTAC+CGG 0.612863 3_1:+65440628 Msa0368630:CDS
TAGCATGTAGTGTGTCTAGG+AGG 0.613908 3_1:+65441294 Msa0368630:three_prime_UTR
ACAACTACACCATATTTCGA+TGG 0.616973 3_1:-65440610 None:intergenic
TTGTTAGCAAAATCAACAAG+AGG 0.621493 3_1:-65439151 None:intergenic
TGAGACAGCCAAAATTGGCG+AGG 0.624566 3_1:+65440960 Msa0368630:CDS
GCACAATCCATACCTCTGGT+TGG 0.626350 3_1:-65440166 None:intergenic
GTTTATTGGACTATCGTCGG+TGG 0.627252 3_1:-65436996 None:intergenic
CCTGACTCAATAGTACAGCC+AGG 0.628206 3_1:-65441015 None:intergenic
ATACATGGACATCTTCTCCA+AGG 0.629569 3_1:-65441164 None:intergenic
CTCAAGAAACTGAACCATTG+GGG 0.633701 3_1:+65440338 Msa0368630:CDS
TGTAAACTTCATCAGATACA+TGG 0.633717 3_1:-65441179 None:intergenic
TTGTTATGGAAGAGACTACC+GGG 0.634181 3_1:+65440629 Msa0368630:CDS
TCTGATGAAGTTTACAGCAA+TGG 0.634276 3_1:+65441186 Msa0368630:CDS
GAGACAGCCAAAATTGGCGA+GGG 0.639601 3_1:+65440961 Msa0368630:CDS
GGACATTGGAGTTACTGAAG+TGG 0.642199 3_1:+65440127 Msa0368630:CDS
TCACATTCCCCAAAATGTGA+GGG 0.643108 3_1:-65440930 None:intergenic
CAAGAAGACGAGTTAGAGTG+AGG 0.652032 3_1:-65437235 None:intergenic
AGTTTACAGCAATGGTGGTG+TGG 0.665559 3_1:+65441194 Msa0368630:CDS
GGCTATCAATTACCAACCAG+AGG 0.681698 3_1:+65440154 Msa0368630:CDS
GATGAAGTTTACAGCAATGG+TGG 0.691163 3_1:+65441189 Msa0368630:CDS
TATCCAGCAGCATCATCGGG+TGG 0.692094 3_1:+65441097 Msa0368630:CDS
TGGAATGGTGAAACTGAATG+AGG 0.696240 3_1:-65437182 None:intergenic
AATCCAGAGATAGTCATGTG+AGG 0.703190 3_1:+65441252 Msa0368630:CDS
CAATATGATCCAAAACTGAG+GGG 0.719526 3_1:-65440726 None:intergenic
GAATTCCACAAATCTCATGG+AGG 0.748000 3_1:+65440472 Msa0368630:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGAGAATTAATAATAATAAA+GGG - chr3_1:65437361-65437380 None:intergenic 10.0%
!! TTGAGAATTAATAATAATAA+AGG - chr3_1:65437362-65437381 None:intergenic 10.0%
!! TATAGTTATTCTAATTCAAT+TGG + chr3_1:65437093-65437112 Msa0368630:five_prime_UTR 15.0%
!! AAGAACAAAAAAAAAAAAAC+TGG - chr3_1:65437205-65437224 None:intergenic 15.0%
!!! TATATAAAGTTGGTTTTTTT+AGG + chr3_1:65437606-65437625 Msa0368630:intron 15.0%
!!! TAGATAAAAGTTAAGTTTTT+AGG + chr3_1:65438787-65438806 Msa0368630:intron 15.0%
!!! AGATAAAAGTTAAGTTTTTA+GGG + chr3_1:65438788-65438807 Msa0368630:intron 15.0%
!! AAATATGTATTCATTTCATT+TGG + chr3_1:65441341-65441360 Msa0368630:three_prime_UTR 15.0%
!! ATTCAATTGGAAGTTATTTA+TGG + chr3_1:65437106-65437125 Msa0368630:five_prime_UTR 20.0%
!! CAAAAAAAAAAAAACTGGAA+TGG - chr3_1:65437200-65437219 None:intergenic 20.0%
!! TGGTGGAAATTATTTAAAAA+AGG + chr3_1:65437546-65437565 Msa0368630:intron 20.0%
!! AATGTTGAGATATATAAAGT+TGG + chr3_1:65437596-65437615 Msa0368630:intron 20.0%
!! ATATTTGAAAAACTAATCTC+CGG - chr3_1:65437818-65437837 None:intergenic 20.0%
!!! GATTAGTTTTTCAAATATGT+CGG + chr3_1:65437820-65437839 Msa0368630:intron 20.0%
!!! GGCTTTTTTATAAAATTTTC+AGG - chr3_1:65437993-65438012 None:intergenic 20.0%
!! ATTATTGGTATATTCAAACA+AGG - chr3_1:65438474-65438493 None:intergenic 20.0%
!! TTGTTTGAATATACCAATAA+TGG + chr3_1:65438473-65438492 Msa0368630:intron 20.0%
!!! TTGGATAATGTTAAGTTTTT+AGG + chr3_1:65438675-65438694 Msa0368630:intron 20.0%
!!! TGGATAATGTTAAGTTTTTA+GGG + chr3_1:65438676-65438695 Msa0368630:intron 20.0%
!! ATTTGCATAAATAAAACTAC+TGG - chr3_1:65438903-65438922 None:intergenic 20.0%
!!! TTCAAAACATTTAATTTTCC+TGG + chr3_1:65439038-65439057 Msa0368630:five_prime_UTR 20.0%
!! TATACTTTGACATACTAAAA+TGG - chr3_1:65439505-65439524 None:intergenic 20.0%
!!! AAATCAACTTGTTGAAATTT+GGG - chr3_1:65439757-65439776 None:intergenic 20.0%
!!! TAAATCAACTTGTTGAAATT+TGG - chr3_1:65439758-65439777 None:intergenic 20.0%
!! TATCTGCAAAACAAATTAAA+AGG - chr3_1:65440096-65440115 None:intergenic 20.0%
!! CCTTTCAACTTTATAAATTA+TGG - chr3_1:65441441-65441460 None:intergenic 20.0%
!! CCATAATTTATAAAGTTGAA+AGG + chr3_1:65441438-65441457 Msa0368630:three_prime_UTR 20.0%
!!! CAGAATTTTCTTATTATTTG+AGG + chr3_1:65441523-65441542 Msa0368630:three_prime_UTR 20.0%
!!! ATTGAATATGCCTTGTTTAT+TGG - chr3_1:65437013-65437032 None:intergenic 25.0%
!! TGTTACTTGAAGACTTAAAA+AGG + chr3_1:65437032-65437051 Msa0368630:five_prime_UTR 25.0%
! AATTGGAAGTTATTTATGGA+TGG + chr3_1:65437110-65437129 Msa0368630:five_prime_UTR 25.0%
!!! GTTTCTTTGTGTTTTTTCAT+TGG + chr3_1:65437466-65437485 Msa0368630:intron 25.0%
!!! TGCTTTTAATTCAAGCTTTT+TGG + chr3_1:65437526-65437545 Msa0368630:intron 25.0%
!!! TTTTAATTCAAGCTTTTTGG+TGG + chr3_1:65437529-65437548 Msa0368630:intron 25.0%
!!! TTAGGGTTTTTAAGATCAAA+TGG + chr3_1:65437751-65437770 Msa0368630:intron 25.0%
!!! TAGGGTTTTTAAGATCAAAT+GGG + chr3_1:65437752-65437771 Msa0368630:intron 25.0%
! TATTTGAAAAACTAATCTCC+GGG - chr3_1:65437817-65437836 None:intergenic 25.0%
! TCAATTAAGCTTAAGATACA+AGG - chr3_1:65438702-65438721 None:intergenic 25.0%
! AATTCAAGAAACTCAAGAAA+CGG - chr3_1:65439213-65439232 None:intergenic 25.0%
! AGGGAGAAAATATAACATAT+AGG - chr3_1:65439290-65439309 None:intergenic 25.0%
!! ACAATTTTTCATATCCAACA+AGG + chr3_1:65439424-65439443 Msa0368630:intron 25.0%
!!! AATCAACTTGTTGAAATTTG+GGG - chr3_1:65439756-65439775 None:intergenic 25.0%
!!! TGTTTTAGGTTAATATAGTG+TGG + chr3_1:65439814-65439833 Msa0368630:intron 25.0%
!!! GTTTTAGGTTAATATAGTGT+GGG + chr3_1:65439815-65439834 Msa0368630:intron 25.0%
! ATTAAAAGGAAAAACACATG+AGG - chr3_1:65440082-65440101 None:intergenic 25.0%
!!! TTAATTTGTTTTGCAGATAG+AGG + chr3_1:65440097-65440116 Msa0368630:intron 25.0%
! AATTCTATCATTTCTTTGAG+TGG - chr3_1:65440457-65440476 None:intergenic 25.0%
! AAACAAAAAGCTATATGCAA+TGG + chr3_1:65440798-65440817 Msa0368630:CDS 25.0%
!! ATTATTTGAGGTCACAAAAT+TGG + chr3_1:65441535-65441554 Msa0368630:three_prime_UTR 25.0%
!! TTATTTGAGGTCACAAAATT+GGG + chr3_1:65441536-65441555 Msa0368630:three_prime_UTR 25.0%
AAAGAAACCTGAAGAATTGA+GGG - chr3_1:65437297-65437316 None:intergenic 30.0%
AAAAGAAACCTGAAGAATTG+AGG - chr3_1:65437298-65437317 None:intergenic 30.0%
CTAATCACAAGCATACAATT+TGG - chr3_1:65437428-65437447 None:intergenic 30.0%
!!! GTTGGTTTTTTTAGGACAAA+TGG + chr3_1:65437614-65437633 Msa0368630:intron 30.0%
!!! TTTTTAGGACAAATGGATCT+AGG + chr3_1:65437621-65437640 Msa0368630:intron 30.0%
AGTTAGTGGAATGTAACATA+AGG + chr3_1:65437704-65437723 Msa0368630:intron 30.0%
!!! AATAGTGTCGGTAAAGTTTT+TGG - chr3_1:65437733-65437752 None:intergenic 30.0%
AAAACTTTACCGACACTATT+AGG + chr3_1:65437733-65437752 Msa0368630:intron 30.0%
AAACTTTACCGACACTATTA+GGG + chr3_1:65437734-65437753 Msa0368630:intron 30.0%
CTTAAAAACCCTAATAGTGT+CGG - chr3_1:65437745-65437764 None:intergenic 30.0%
!!! AGGGTTTTTAAGATCAAATG+GGG + chr3_1:65437753-65437772 Msa0368630:intron 30.0%
!! TAGTTTTTCAAATATGTCGG+TGG + chr3_1:65437823-65437842 Msa0368630:intron 30.0%
CAATTGAAACAAAGTTGCTT+CGG + chr3_1:65437905-65437924 Msa0368630:intron 30.0%
!!! ATAAAAAAGCCGTTTTTCCA+TGG + chr3_1:65438002-65438021 Msa0368630:intron 30.0%
!! TATCGCAAAACTTGTTGATA+TGG + chr3_1:65438111-65438130 Msa0368630:intron 30.0%
GTTGATATGGTTAATCAATG+TGG + chr3_1:65438124-65438143 Msa0368630:intron 30.0%
! CTTTACTTTGAAAGCCATAT+AGG + chr3_1:65438248-65438267 Msa0368630:intron 30.0%
! ACAGAAAGCTAGTTTATCTA+GGG - chr3_1:65438385-65438404 None:intergenic 30.0%
GTATATTCAAACAAGGATCA+TGG - chr3_1:65438467-65438486 None:intergenic 30.0%
AAACTATTTAATCGTGCAGA+AGG - chr3_1:65438504-65438523 None:intergenic 30.0%
ATTACAAGAATCATAGACGT+AGG - chr3_1:65438623-65438642 None:intergenic 30.0%
!!! GTCTTTTTTCTTACTGCTTT+TGG + chr3_1:65438656-65438675 Msa0368630:intron 30.0%
TCAACTAAGCTTAAGATACA+AGG - chr3_1:65438814-65438833 None:intergenic 30.0%
TTCTATGCTGTCCTATAAAT+AGG - chr3_1:65438967-65438986 None:intergenic 30.0%
! TAATTTTCCTGGAAAAGCAA+AGG + chr3_1:65439049-65439068 Msa0368630:five_prime_UTR 30.0%
TTGTTAGCAAAATCAACAAG+AGG - chr3_1:65439154-65439173 None:intergenic 30.0%
ATTCAAGAAACTCAAGAAAC+GGG - chr3_1:65439212-65439231 None:intergenic 30.0%
TGGATATGAAAAATTGTTGC+AGG - chr3_1:65439421-65439440 None:intergenic 30.0%
! ATTTTCTGAATGAGTTGTGT+TGG + chr3_1:65439526-65439545 Msa0368630:intron 30.0%
CTTGAGAAGAGTTTATAAAG+AGG + chr3_1:65439685-65439704 Msa0368630:intron 30.0%
AACCTAAAACACGTTAATGA+TGG - chr3_1:65439805-65439824 None:intergenic 30.0%
!! ACAATTTTTCGCACTTTTTG+AGG - chr3_1:65439878-65439897 None:intergenic 30.0%
ATAGAATTCCACAAATCTCA+TGG + chr3_1:65440469-65440488 Msa0368630:CDS 30.0%
AATTACCTTTGTCACCATTA+TGG - chr3_1:65440506-65440525 None:intergenic 30.0%
ATGGTGACAAAGGTAATTAA+CGG + chr3_1:65440508-65440527 Msa0368630:intron 30.0%
GAAATATGGTGTAGTTGTTA+TGG + chr3_1:65440615-65440634 Msa0368630:CDS 30.0%
TCAATATGATCCAAAACTGA+GGG - chr3_1:65440730-65440749 None:intergenic 30.0%
TTCAATATGATCCAAAACTG+AGG - chr3_1:65440731-65440750 None:intergenic 30.0%
!! TTTTTGTTTGCTGCAATCTT+TGG - chr3_1:65440787-65440806 None:intergenic 30.0%
TGTAAACTTCATCAGATACA+TGG - chr3_1:65441182-65441201 None:intergenic 30.0%
!! AAACTGACTTTTACAATGTG+CGG - chr3_1:65441400-65441419 None:intergenic 30.0%
CTTGTTTATTGGACTATCGT+CGG - chr3_1:65437002-65437021 None:intergenic 35.0%
!! ACGATAGTATTGGTCAATGT+TGG - chr3_1:65437158-65437177 None:intergenic 35.0%
! ATGAGGTGTTACGATAGTAT+TGG - chr3_1:65437168-65437187 None:intergenic 35.0%
!! TTACTTTTGTCATGCTCACA+AGG + chr3_1:65437382-65437401 Msa0368630:intron 35.0%
!!! GGGTTTTTAAGATCAAATGG+GGG + chr3_1:65437754-65437773 Msa0368630:intron 35.0%
CTAACATTGCCATGGAAAAA+CGG - chr3_1:65438014-65438033 None:intergenic 35.0%
ACGTGAATATGTGACCTAAT+CGG + chr3_1:65438072-65438091 Msa0368630:intron 35.0%
ATGGTTAATCAATGTGGCAA+AGG + chr3_1:65438130-65438149 Msa0368630:intron 35.0%
TGGTTAATCAATGTGGCAAA+GGG + chr3_1:65438131-65438150 Msa0368630:intron 35.0%
AAAATTCACCAACTCCAAAC+AGG - chr3_1:65438160-65438179 None:intergenic 35.0%
TAACTAGGTTTGGCTACTAA+GGG - chr3_1:65438195-65438214 None:intergenic 35.0%
AAGCCATATAGGAAATCTTC+TGG + chr3_1:65438259-65438278 Msa0368630:intron 35.0%
ATGCCAGAAGATTTCCTATA+TGG - chr3_1:65438265-65438284 None:intergenic 35.0%
! AATCTTCTGGCATTGAAAGA+AGG + chr3_1:65438272-65438291 Msa0368630:intron 35.0%
! CACAGAAAGCTAGTTTATCT+AGG - chr3_1:65438386-65438405 None:intergenic 35.0%
TGGTCATTACAGCTTAACTT+TGG - chr3_1:65438440-65438459 None:intergenic 35.0%
AGCTAGTATCATTTCATAGC+TGG + chr3_1:65438541-65438560 Msa0368630:intron 35.0%
GGAAGTAAAAGCGAATCAAA+AGG - chr3_1:65438597-65438616 None:intergenic 35.0%
AAGAATCATAGACGTAGGAA+CGG - chr3_1:65438618-65438637 None:intergenic 35.0%
! ACAGGAACAAATAACTTGCA+AGG - chr3_1:65438940-65438959 None:intergenic 35.0%
TTCCTGTCATGCCTATTTAT+AGG + chr3_1:65438953-65438972 Msa0368630:intron 35.0%
TTCAAGAAACTCAAGAAACG+GGG - chr3_1:65439211-65439230 None:intergenic 35.0%
TGCAAGATATTTCAGCAGAA+TGG + chr3_1:65439363-65439382 Msa0368630:intron 35.0%
GCAAGATATTTCAGCAGAAT+GGG + chr3_1:65439364-65439383 Msa0368630:intron 35.0%
GAGAAGAGTTTATAAAGAGG+AGG + chr3_1:65439688-65439707 Msa0368630:intron 35.0%
CTAACTCATCCTTACAAAAC+CGG - chr3_1:65439732-65439751 None:intergenic 35.0%
CTAAAACACGTTAATGATGG+AGG - chr3_1:65439802-65439821 None:intergenic 35.0%
! CTCCATCATTAACGTGTTTT+AGG + chr3_1:65439800-65439819 Msa0368630:intron 35.0%
!! TTTCGCACTTTTTGAGGAAA+GGG - chr3_1:65439872-65439891 None:intergenic 35.0%
!! TTTTCGCACTTTTTGAGGAA+AGG - chr3_1:65439873-65439892 None:intergenic 35.0%
TTCATTGAGAATGACTGACA+CGG - chr3_1:65440206-65440225 None:intergenic 35.0%
AATTCAACATCACCTACAAG+AGG - chr3_1:65440273-65440292 None:intergenic 35.0%
GGTGATGTTGAATTTCTTGA+AGG + chr3_1:65440279-65440298 Msa0368630:intron 35.0%
GAATTTCTTGAAGGACTTTG+AGG + chr3_1:65440288-65440307 Msa0368630:CDS 35.0%
TCTCAAGAAACTGAACCATT+GGG + chr3_1:65440337-65440356 Msa0368630:CDS 35.0%
TCGCTGTTGAGAACAAAAAA+TGG - chr3_1:65440418-65440437 None:intergenic 35.0%
ACAACTACACCATATTTCGA+TGG - chr3_1:65440613-65440632 None:intergenic 35.0%
TTGTTGCCAACAAACAACTT+GGG - chr3_1:65440679-65440698 None:intergenic 35.0%
TTTGTTGCCAACAAACAACT+TGG - chr3_1:65440680-65440699 None:intergenic 35.0%
TTGGCAACAAAATCAATGCT+GGG + chr3_1:65440689-65440708 Msa0368630:CDS 35.0%
CAATATGATCCAAAACTGAG+GGG - chr3_1:65440729-65440748 None:intergenic 35.0%
ACCTCTTTCTCAATAGAAGT+GGG - chr3_1:65440760-65440779 None:intergenic 35.0%
TCTGATGAAGTTTACAGCAA+TGG + chr3_1:65441186-65441205 Msa0368630:CDS 35.0%
!!! CTTGTTTTGATTTCCTTGTG+GGG - chr3_1:65441225-65441244 None:intergenic 35.0%
!!! GCTTGTTTTGATTTCCTTGT+GGG - chr3_1:65441226-65441245 None:intergenic 35.0%
!!! TGCTTGTTTTGATTTCCTTG+TGG - chr3_1:65441227-65441246 None:intergenic 35.0%
CTACATGCTAAGAATTTGGA+AGG - chr3_1:65441284-65441303 None:intergenic 35.0%
CACACTACATGCTAAGAATT+TGG - chr3_1:65441288-65441307 None:intergenic 35.0%
!! AACTGACTTTTACAATGTGC+GGG - chr3_1:65441399-65441418 None:intergenic 35.0%
TCAGTGTCTATGTAAAGAGT+TGG + chr3_1:65441461-65441480 Msa0368630:three_prime_UTR 35.0%
CACTGAAAATTACACAGCTT+TGG - chr3_1:65441496-65441515 None:intergenic 35.0%
CAAAATTGGGATTCTTTGAC+AGG + chr3_1:65441549-65441568 Msa0368630:three_prime_UTR 35.0%
CGACGATAGTCCAATAAACA+AGG + chr3_1:65437000-65437019 Msa0368630:five_prime_UTR 40.0%
TGGAATGGTGAAACTGAATG+AGG - chr3_1:65437185-65437204 None:intergenic 40.0%
! TTCTTGACTCGTTCGAGTTA+GGG + chr3_1:65437252-65437271 Msa0368630:five_prime_UTR 40.0%
AACCTGAAGAATTGAGGGTT+TGG - chr3_1:65437292-65437311 None:intergenic 40.0%
TAGGGTATAGCTGAAGCTAA+AGG - chr3_1:65437657-65437676 None:intergenic 40.0%
TAGCTTCAGCTATACCCTAA+TGG + chr3_1:65437658-65437677 Msa0368630:intron 40.0%
AGCTTCAGCTATACCCTAAT+GGG + chr3_1:65437659-65437678 Msa0368630:intron 40.0%
AACTAATCTCCGGGTTTGAA+TGG - chr3_1:65437808-65437827 None:intergenic 40.0%
AACTAATCTCCGGGTTTGAA+TGG - chr3_1:65437808-65437827 None:intergenic 40.0%
!!! ACCCGGAGATTAGTTTTTCT+CGG + chr3_1:65437861-65437880 Msa0368630:intron 40.0%
ACCGAGAAAAACTAATCTCC+GGG - chr3_1:65437865-65437884 None:intergenic 40.0%
CACCGAGAAAAACTAATCTC+CGG - chr3_1:65437866-65437885 None:intergenic 40.0%
ATTCACGTGTACCATAACAG+AGG - chr3_1:65438060-65438079 None:intergenic 40.0%
ACACAAGATTGAGTCCGATT+AGG - chr3_1:65438089-65438108 None:intergenic 40.0%
TTAATCAATGTGGCAAAGGG+TGG + chr3_1:65438134-65438153 Msa0368630:intron 40.0%
GTAACTAGGTTTGGCTACTA+AGG - chr3_1:65438196-65438215 None:intergenic 40.0%
AGTAGCCAAACCTAGTTACT+TGG + chr3_1:65438197-65438216 Msa0368630:intron 40.0%
! CATTAGAGTGCCAAGTAACT+AGG - chr3_1:65438210-65438229 None:intergenic 40.0%
!!! GGGTTGGATTAGCTTAGTTT+TGG + chr3_1:65438336-65438355 Msa0368630:intron 40.0%
! GCAGAAGGTTGATCCATTAT+TGG - chr3_1:65438489-65438508 None:intergenic 40.0%
TCTTGTAATGACACGCAGTA+TGG + chr3_1:65438634-65438653 Msa0368630:intron 40.0%
GTCCTATAAATAGGCATGAC+AGG - chr3_1:65438958-65438977 None:intergenic 40.0%
!!! GTTTTGAAGCAGACCAAGAA+AGG - chr3_1:65439026-65439045 None:intergenic 40.0%
CAAAGGTCACATCACAATGA+AGG + chr3_1:65439066-65439085 Msa0368630:exon 40.0%
!! CACAATGAAGGCATTGATTC+TGG + chr3_1:65439078-65439097 Msa0368630:exon 40.0%
!! ATGAAGGCATTGATTCTGGT+TGG + chr3_1:65439082-65439101 Msa0368630:CDS 40.0%
GCAAAATCAACAAGAGGCTT+GGG - chr3_1:65439148-65439167 None:intergenic 40.0%
AGCAAAATCAACAAGAGGCT+TGG - chr3_1:65439149-65439168 None:intergenic 40.0%
CTTACCTGATGCAGAATCAT+GGG - chr3_1:65439178-65439197 None:intergenic 40.0%
TTACGATTGCTATGCTACCT+GGG + chr3_1:65439234-65439253 Msa0368630:intron 40.0%
AAACCATCTCTGATTTACCC+AGG - chr3_1:65439254-65439273 None:intergenic 40.0%
! CTGACTGACTCATGATATCA+GGG - chr3_1:65439309-65439328 None:intergenic 40.0%
! TCTGACTGACTCATGATATC+AGG - chr3_1:65439310-65439329 None:intergenic 40.0%
AATCCAGCAAGATTCAACGT+TGG - chr3_1:65439456-65439475 None:intergenic 40.0%
TGGAAATTCCGCCTTAATTG+CGG + chr3_1:65439546-65439565 Msa0368630:intron 40.0%
CTAACCAAAGGTCGCAATTT+AGG - chr3_1:65439586-65439605 None:intergenic 40.0%
TCTCAAAGCCAACACAATGA+AGG - chr3_1:65439630-65439649 None:intergenic 40.0%
!! TTCATTGTGTTGGCTTTGAG+AGG + chr3_1:65439629-65439648 Msa0368630:intron 40.0%
!! TCATTGTGTTGGCTTTGAGA+GGG + chr3_1:65439630-65439649 Msa0368630:intron 40.0%
GAGTACTATCTATCCGATGT+GGG - chr3_1:65439666-65439685 None:intergenic 40.0%
! AGAGTACTATCTATCCGATG+TGG - chr3_1:65439667-65439686 None:intergenic 40.0%
!! TTCGCACTTTTTGAGGAAAG+GGG - chr3_1:65439871-65439890 None:intergenic 40.0%
ATCTACTCACAGACAGCAAA+GGG - chr3_1:65439986-65440005 None:intergenic 40.0%
AGGAAAAACACATGAGGTGA+TGG - chr3_1:65440076-65440095 None:intergenic 40.0%
TTTGCAGATAGAGGCTCTTA+AGG + chr3_1:65440106-65440125 Msa0368630:intron 40.0%
ATAGAGGCTCTTAAGGACAT+TGG + chr3_1:65440113-65440132 Msa0368630:CDS 40.0%
TCAATTACCAACCAGAGGTA+TGG + chr3_1:65440159-65440178 Msa0368630:intron 40.0%
TTGTGAACACTTCCTCTTGT+AGG + chr3_1:65440258-65440277 Msa0368630:intron 40.0%
CTCTCAAGAAACTGAACCAT+TGG + chr3_1:65440336-65440355 Msa0368630:CDS 40.0%
CTCAAGAAACTGAACCATTG+GGG + chr3_1:65440338-65440357 Msa0368630:CDS 40.0%
GAATTCCACAAATCTCATGG+AGG + chr3_1:65440472-65440491 Msa0368630:CDS 40.0%
AGCTTCCATAATGGTGACAA+AGG + chr3_1:65440498-65440517 Msa0368630:CDS 40.0%
! TGTTTTACATCTGCTTGTGC+AGG + chr3_1:65440579-65440598 Msa0368630:intron 40.0%
GTTGTTATGGAAGAGACTAC+CGG + chr3_1:65440628-65440647 Msa0368630:CDS 40.0%
TTGTTATGGAAGAGACTACC+GGG + chr3_1:65440629-65440648 Msa0368630:CDS 40.0%
AACAAATTTCTCAACCTGCC+CGG - chr3_1:65440650-65440669 None:intergenic 40.0%
GAGAAACCCAAGTTGTTTGT+TGG + chr3_1:65440670-65440689 Msa0368630:CDS 40.0%
GTTGGCAACAAAATCAATGC+TGG + chr3_1:65440688-65440707 Msa0368630:CDS 40.0%
ACCCACTTCTATTGAGAAAG+AGG + chr3_1:65440756-65440775 Msa0368630:CDS 40.0%
CACCTCTTTCTCAATAGAAG+TGG - chr3_1:65440761-65440780 None:intergenic 40.0%
AGACCTGTTATATAGTCCCT+TGG - chr3_1:65440856-65440875 None:intergenic 40.0%
GAAGAAGACTTCTTCCAAGT+TGG + chr3_1:65440900-65440919 Msa0368630:CDS 40.0%
TCACATTCCCCAAAATGTGA+GGG - chr3_1:65440933-65440952 None:intergenic 40.0%
ATCACATTCCCCAAAATGTG+AGG - chr3_1:65440934-65440953 None:intergenic 40.0%
ATTGGACCTGATGTTGCAAT+TGG + chr3_1:65440991-65441010 Msa0368630:CDS 40.0%
! TCAAGTTGCACTGTAATGAG+AGG + chr3_1:65441048-65441067 Msa0368630:CDS 40.0%
GCATTCAACTGTTGGTCAAT+GGG + chr3_1:65441119-65441138 Msa0368630:CDS 40.0%
GTGGAGAATATGACTATCCT+TGG + chr3_1:65441147-65441166 Msa0368630:CDS 40.0%
ATACATGGACATCTTCTCCA+AGG - chr3_1:65441167-65441186 None:intergenic 40.0%
GATGAAGTTTACAGCAATGG+TGG + chr3_1:65441189-65441208 Msa0368630:CDS 40.0%
AATCCAGAGATAGTCATGTG+AGG + chr3_1:65441252-65441271 Msa0368630:CDS 40.0%
TCTTAGCATGTAGTGTGTCT+AGG + chr3_1:65441291-65441310 Msa0368630:three_prime_UTR 40.0%
!! ACTGACTTTTACAATGTGCG+GGG - chr3_1:65441398-65441417 None:intergenic 40.0%
GTTTATTGGACTATCGTCGG+TGG - chr3_1:65436999-65437018 None:intergenic 45.0%
CAAGAAGACGAGTTAGAGTG+AGG - chr3_1:65437238-65437257 None:intergenic 45.0%
! CTTCTTGACTCGTTCGAGTT+AGG + chr3_1:65437251-65437270 Msa0368630:five_prime_UTR 45.0%
! GGACAAATGGATCTAGGACT+AGG + chr3_1:65437627-65437646 Msa0368630:intron 45.0%
GCTTCAGCTATACCCTAATG+GGG + chr3_1:65437660-65437679 Msa0368630:intron 45.0%
GATCGAACTCAACCCCATTA+GGG - chr3_1:65437675-65437694 None:intergenic 45.0%
TGATCGAACTCAACCCCATT+AGG - chr3_1:65437676-65437695 None:intergenic 45.0%
! CGATCACAGTGGTTAGTTAG+TGG + chr3_1:65437690-65437709 Msa0368630:intron 45.0%
!!! CGGAGATTAGTTTTTCTCGG+TGG + chr3_1:65437864-65437883 Msa0368630:intron 45.0%
TGCGTCTACTAACATTGCCA+TGG - chr3_1:65438022-65438041 None:intergenic 45.0%
GAGTGCCAAGTAACTAGGTT+TGG - chr3_1:65438205-65438224 None:intergenic 45.0%
CAAACAAGGATCATGGTACG+TGG - chr3_1:65438460-65438479 None:intergenic 45.0%
AGTGTACAGAGGATGTGACA+CGG - chr3_1:65438855-65438874 None:intergenic 45.0%
TGTTCTCTTCCAGCCTTTCT+TGG + chr3_1:65439010-65439029 Msa0368630:intron 45.0%
!! GATGTGACCTTTGCTTTTCC+AGG - chr3_1:65439059-65439078 None:intergenic 45.0%
!! AAGGCATTGATTCTGGTTGG+AGG + chr3_1:65439085-65439104 Msa0368630:CDS 45.0%
!! AGGCATTGATTCTGGTTGGA+GGG + chr3_1:65439086-65439105 Msa0368630:CDS 45.0%
! TTGATTCTGGTTGGAGGGTT+TGG + chr3_1:65439091-65439110 Msa0368630:CDS 45.0%
CCTTACCTGATGCAGAATCA+TGG - chr3_1:65439179-65439198 None:intergenic 45.0%
CCATGATTCTGCATCAGGTA+AGG + chr3_1:65439176-65439195 Msa0368630:intron 45.0%
CTTACGATTGCTATGCTACC+TGG + chr3_1:65439233-65439252 Msa0368630:intron 45.0%
CTACCTGGGTAAATCAGAGA+TGG + chr3_1:65439248-65439267 Msa0368630:intron 45.0%
! AACGTTGGTTGTTGCCTTGT+TGG - chr3_1:65439441-65439460 None:intergenic 45.0%
CAACCAACGTTGAATCTTGC+TGG + chr3_1:65439450-65439469 Msa0368630:intron 45.0%
GCTGGATTCTGTCAAAACTC+TGG + chr3_1:65439468-65439487 Msa0368630:intron 45.0%
CTGCAATGAAGGCTAACCAA+AGG - chr3_1:65439598-65439617 None:intergenic 45.0%
!! CAACACAATGAAGGTGTTGG+AGG - chr3_1:65439621-65439640 None:intergenic 45.0%
CTCCAACACCTTCATTGTGT+TGG + chr3_1:65439619-65439638 Msa0368630:intron 45.0%
! AGCCAACACAATGAAGGTGT+TGG - chr3_1:65439624-65439643 None:intergenic 45.0%
!! CCTTACAAAACCGGCTTGTA+AGG - chr3_1:65439723-65439742 None:intergenic 45.0%
!! CCTTACAAGCCGGTTTTGTA+AGG + chr3_1:65439720-65439739 Msa0368630:intron 45.0%
!! TCGCACTTTTTGAGGAAAGG+GGG - chr3_1:65439870-65439889 None:intergenic 45.0%
TTGTTCTTGCTTGCGTGAGA+AGG + chr3_1:65439894-65439913 Msa0368630:intron 45.0%
CATCTACTCACAGACAGCAA+AGG - chr3_1:65439987-65440006 None:intergenic 45.0%
TTGCTGTCTGTGAGTAGATG+CGG + chr3_1:65439987-65440006 Msa0368630:intron 45.0%
GGACATTGGAGTTACTGAAG+TGG + chr3_1:65440127-65440146 Msa0368630:CDS 45.0%
GGCTATCAATTACCAACCAG+AGG + chr3_1:65440154-65440173 Msa0368630:CDS 45.0%
TGACACGGTTAGGAAAAGAG+AGG - chr3_1:65440191-65440210 None:intergenic 45.0%
TGAGAATGACTGACACGGTT+AGG - chr3_1:65440201-65440220 None:intergenic 45.0%
TTATCTCTGGCAAGAGCCAA+GGG - chr3_1:65440373-65440392 None:intergenic 45.0%
GCCAGAGATAAGCTGATTGA+TGG + chr3_1:65440382-65440401 Msa0368630:CDS 45.0%
GCCATCAATCAGCTTATCTC+TGG - chr3_1:65440386-65440405 None:intergenic 45.0%
CTTCTCCTCCATGAGATTTG+TGG - chr3_1:65440480-65440499 None:intergenic 45.0%
TGGAGGAGAAGCTTCCATAA+TGG + chr3_1:65440489-65440508 Msa0368630:CDS 45.0%
GTTGACGAGCCATCGAAATA+TGG + chr3_1:65440601-65440620 Msa0368630:CDS 45.0%
CCAAAACTGAGGGGTTCAAT+AGG - chr3_1:65440720-65440739 None:intergenic 45.0%
! CCTATTGAACCCCTCAGTTT+TGG + chr3_1:65440717-65440736 Msa0368630:CDS 45.0%
! CTATATGCAATGGTTCTGCC+TGG + chr3_1:65440808-65440827 Msa0368630:CDS 45.0%
CAGCCAAGGGACTATATAAC+AGG + chr3_1:65440850-65440869 Msa0368630:CDS 45.0%
GTGCATGAGACAGCCAAAAT+TGG + chr3_1:65440955-65440974 Msa0368630:CDS 45.0%
GTACTATTGAGTCAGGTGTC+AGG + chr3_1:65441022-65441041 Msa0368630:CDS 45.0%
GCACTGTAATGAGAGGAGTT+CGG + chr3_1:65441055-65441074 Msa0368630:CDS 45.0%
TGCATATCCAGCAGCATCAT+CGG + chr3_1:65441093-65441112 Msa0368630:CDS 45.0%
GGCATTCAACTGTTGGTCAA+TGG + chr3_1:65441118-65441137 Msa0368630:CDS 45.0%
! AGTTTACAGCAATGGTGGTG+TGG + chr3_1:65441194-65441213 Msa0368630:CDS 45.0%
TAGCCTCACATGACTATCTC+TGG - chr3_1:65441258-65441277 None:intergenic 45.0%
TAGCATGTAGTGTGTCTAGG+AGG + chr3_1:65441294-65441313 Msa0368630:three_prime_UTR 45.0%
! ACTTTTACAATGTGCGGGGA+AGG - chr3_1:65441394-65441413 None:intergenic 45.0%
CGCCAAACCCTCAATTCTTC+AGG + chr3_1:65437287-65437306 Msa0368630:five_prime_UTR 50.0%
GCCACTACTCCATTCAAACC+CGG + chr3_1:65437796-65437815 Msa0368630:intron 50.0%
TCCGGGTTTGAATGGAGTAG+TGG - chr3_1:65437800-65437819 None:intergenic 50.0%
! TAGTTTTTCTCGGTGGCGTG+TGG + chr3_1:65437871-65437890 Msa0368630:intron 50.0%
! AGTTTTTCTCGGTGGCGTGT+GGG + chr3_1:65437872-65437891 Msa0368630:intron 50.0%
TCCTAGCTCGACCTCTGTTA+TGG + chr3_1:65438046-65438065 Msa0368630:intron 50.0%
ACCATAACAGAGGTCGAGCT+AGG - chr3_1:65438050-65438069 None:intergenic 50.0%
TGACAAGCAGAAGCTGAGTG+CGG + chr3_1:65438314-65438333 Msa0368630:intron 50.0%
CTGAGCTGACAAGTGTACAG+AGG - chr3_1:65438866-65438885 None:intergenic 50.0%
CTCTGTACACTTGTCAGCTC+AGG + chr3_1:65438864-65438883 Msa0368630:intron 50.0%
TGAAGCAGACCAAGAAAGGC+TGG - chr3_1:65439022-65439041 None:intergenic 50.0%
! TGGTTGGAGGGTTTGGAACA+AGG + chr3_1:65439098-65439117 Msa0368630:CDS 50.0%
! GAGGGTTTGGAACAAGGTTG+AGG + chr3_1:65439104-65439123 Msa0368630:CDS 50.0%
TTGGGAACGCTGAGTGTCAA+TGG - chr3_1:65439130-65439149 None:intergenic 50.0%
CAAGCCCATGATTCTGCATC+AGG + chr3_1:65439171-65439190 Msa0368630:CDS 50.0%
GTCGCAATTTAGGCGACTAG+GGG - chr3_1:65439576-65439595 None:intergenic 50.0%
GGTCGCAATTTAGGCGACTA+GGG - chr3_1:65439577-65439596 None:intergenic 50.0%
AGGTCGCAATTTAGGCGACT+AGG - chr3_1:65439578-65439597 None:intergenic 50.0%
GTCGCCTAAATTGCGACCTT+TGG + chr3_1:65439579-65439598 Msa0368630:intron 50.0%
!! TTGTGTTGGCTTTGAGAGGG+TGG + chr3_1:65439633-65439652 Msa0368630:intron 50.0%
! GGGTGGATTTAGTCCCACAT+CGG + chr3_1:65439650-65439669 Msa0368630:intron 50.0%
!! CAAAACCGGCTTGTAAGGTG+AGG - chr3_1:65439718-65439737 None:intergenic 50.0%
!! GACAGCAAAGGGATGATGGA+AGG - chr3_1:65439975-65439994 None:intergenic 50.0%
CACAGACAGCAAAGGGATGA+TGG - chr3_1:65439979-65439998 None:intergenic 50.0%
TGCTGTCTGTGAGTAGATGC+GGG + chr3_1:65439988-65440007 Msa0368630:intron 50.0%
TGGAGTTACTGAAGTGGTGC+TGG + chr3_1:65440133-65440152 Msa0368630:CDS 50.0%
GCACAATCCATACCTCTGGT+TGG - chr3_1:65440169-65440188 None:intergenic 50.0%
! AGAGGCACAATCCATACCTC+TGG - chr3_1:65440173-65440192 None:intergenic 50.0%
CTTATCTCTGGCAAGAGCCA+AGG - chr3_1:65440374-65440393 None:intergenic 50.0%
! CAATGGTTCTGCCTGGATTC+TGG + chr3_1:65440815-65440834 Msa0368630:CDS 50.0%
CCAATGTCCATCCAGAATCC+AGG - chr3_1:65440829-65440848 None:intergenic 50.0%
CCTGGATTCTGGATGGACAT+TGG + chr3_1:65440826-65440845 Msa0368630:CDS 50.0%
GATGGACATTGGACAGCCAA+GGG + chr3_1:65440837-65440856 Msa0368630:CDS 50.0%
! AACAGGTCTGAGACTCTACC+TGG + chr3_1:65440867-65440886 Msa0368630:CDS 50.0%
TCTTCTTCCTGAGTGAGTCC+AGG - chr3_1:65440888-65440907 None:intergenic 50.0%
! ACTTCTTCCAAGTTGGCCAG+TGG + chr3_1:65440907-65440926 Msa0368630:CDS 50.0%
TGAGACAGCCAAAATTGGCG+AGG + chr3_1:65440960-65440979 Msa0368630:CDS 50.0%
GAGACAGCCAAAATTGGCGA+GGG + chr3_1:65440961-65440980 Msa0368630:CDS 50.0%
! GAGACATCCCTCGCCAATTT+TGG - chr3_1:65440971-65440990 None:intergenic 50.0%
ATTGGCGAGGGATGTCTCAT+TGG + chr3_1:65440973-65440992 Msa0368630:CDS 50.0%
CCAGGACCAATTGCAACATC+AGG - chr3_1:65441000-65441019 None:intergenic 50.0%
CCTGATGTTGCAATTGGTCC+TGG + chr3_1:65440997-65441016 Msa0368630:CDS 50.0%
CCTGACTCAATAGTACAGCC+AGG - chr3_1:65441018-65441037 None:intergenic 50.0%
CCTGGCTGTACTATTGAGTC+AGG + chr3_1:65441015-65441034 Msa0368630:CDS 50.0%
GCATATCCAGCAGCATCATC+GGG + chr3_1:65441094-65441113 Msa0368630:CDS 50.0%
ATCGGGTGGCATTCAACTGT+TGG + chr3_1:65441111-65441130 Msa0368630:CDS 50.0%
TTACAATGTGCGGGGAAGGA+GGG - chr3_1:65441390-65441409 None:intergenic 50.0%
TTTACAATGTGCGGGGAAGG+AGG - chr3_1:65441391-65441410 None:intergenic 50.0%
GGGGTTGAGTTCGATCACAG+TGG + chr3_1:65437679-65437698 Msa0368630:intron 55.0%
GGCGTGTGACCATTCAAACC+CGG + chr3_1:65437844-65437863 Msa0368630:intron 55.0%
! AAGGGTGGCCTGTTTGGAGT+TGG + chr3_1:65438149-65438168 Msa0368630:intron 55.0%
GACAAGCAGAAGCTGAGTGC+GGG + chr3_1:65438315-65438334 Msa0368630:intron 55.0%
ACAAGCAGAAGCTGAGTGCG+GGG + chr3_1:65438316-65438335 Msa0368630:intron 55.0%
CTAGGGGCAGACCGCAATTA+AGG - chr3_1:65439560-65439579 None:intergenic 55.0%
! GGTGTTGGAGGCTGCAATGA+AGG - chr3_1:65439609-65439628 None:intergenic 55.0%
GCACTCCTCACCTTACAAGC+CGG + chr3_1:65439710-65439729 Msa0368630:intron 55.0%
ACTGAACCATTGGGGACTGC+AGG + chr3_1:65440346-65440365 Msa0368630:CDS 55.0%
TATGGAAGAGACTACCGGGC+AGG + chr3_1:65440633-65440652 Msa0368630:CDS 55.0%
GGTTCTGCCTGGATTCTGGA+TGG + chr3_1:65440819-65440838 Msa0368630:CDS 55.0%
GGATGGACATTGGACAGCCA+AGG + chr3_1:65440836-65440855 Msa0368630:CDS 55.0%
GACTCTACCTGGACTCACTC+AGG + chr3_1:65440878-65440897 Msa0368630:CDS 55.0%
! GCCAGTGGCCCTCACATTTT+GGG + chr3_1:65440922-65440941 Msa0368630:CDS 55.0%
! CCAGTGGCCCTCACATTTTG+GGG + chr3_1:65440923-65440942 Msa0368630:CDS 55.0%
TATCCAGCAGCATCATCGGG+TGG + chr3_1:65441097-65441116 Msa0368630:CDS 55.0%
!! TGGTGTGGTTTTGCCCCACA+AGG + chr3_1:65441209-65441228 Msa0368630:CDS 55.0%
GTGGCAAAGGGTGGCCTGTT+TGG + chr3_1:65438143-65438162 Msa0368630:intron 60.0%
GGGGCAGACCGCAATTAAGG+CGG - chr3_1:65439557-65439576 None:intergenic 60.0%
AAGGGACCTGCAGTCCCCAA+TGG - chr3_1:65440355-65440374 None:intergenic 60.0%
ATTGGGGACTGCAGGTCCCT+TGG + chr3_1:65440354-65440373 Msa0368630:CDS 60.0%
! GGCCAGTGGCCCTCACATTT+TGG + chr3_1:65440921-65440940 Msa0368630:CDS 60.0%
CCCCAAAATGTGAGGGCCAC+TGG - chr3_1:65440926-65440945 None:intergenic 60.0%
ATGCCACCCGATGATGCTGC+TGG - chr3_1:65441103-65441122 None:intergenic 60.0%
! TGTTGGTCAATGGGCTCGCG+TGG + chr3_1:65441128-65441147 Msa0368630:CDS 60.0%
GCAGAAGCTGAGTGCGGGGT+TGG + chr3_1:65438320-65438339 Msa0368630:intron 65.0%
GTGAGGGCCACTGGCCAACT+TGG - chr3_1:65440917-65440936 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 65436982 65441586 65436982 ID=Msa0368630;Name=Msa0368630
chr3_1 mRNA 65436982 65441586 65436982 ID=Msa0368630-mRNA-1;Parent=Msa0368630;Name=Msa0368630-mRNA-1;_AED=0.04;_eAED=0.04;_QI=386|1|1|1|0.75|0.6|5|314|361
chr3_1 exon 65436982 65437308 65436982 ID=Msa0368630-mRNA-1:exon:13106;Parent=Msa0368630-mRNA-1
chr3_1 exon 65439023 65439192 65439023 ID=Msa0368630-mRNA-1:exon:13107;Parent=Msa0368630-mRNA-1
chr3_1 exon 65440113 65440175 65440113 ID=Msa0368630-mRNA-1:exon:13108;Parent=Msa0368630-mRNA-1
chr3_1 exon 65440280 65440519 65440280 ID=Msa0368630-mRNA-1:exon:13109;Parent=Msa0368630-mRNA-1
chr3_1 exon 65440601 65441586 65440601 ID=Msa0368630-mRNA-1:exon:13110;Parent=Msa0368630-mRNA-1
chr3_1 five_prime_UTR 65436982 65437308 65436982 ID=Msa0368630-mRNA-1:five_prime_utr;Parent=Msa0368630-mRNA-1
chr3_1 five_prime_UTR 65439023 65439081 65439023 ID=Msa0368630-mRNA-1:five_prime_utr;Parent=Msa0368630-mRNA-1
chr3_1 CDS 65439082 65439192 65439082 ID=Msa0368630-mRNA-1:cds;Parent=Msa0368630-mRNA-1
chr3_1 CDS 65440113 65440175 65440113 ID=Msa0368630-mRNA-1:cds;Parent=Msa0368630-mRNA-1
chr3_1 CDS 65440280 65440519 65440280 ID=Msa0368630-mRNA-1:cds;Parent=Msa0368630-mRNA-1
chr3_1 CDS 65440601 65441272 65440601 ID=Msa0368630-mRNA-1:cds;Parent=Msa0368630-mRNA-1
chr3_1 three_prime_UTR 65441273 65441586 65441273 ID=Msa0368630-mRNA-1:three_prime_utr;Parent=Msa0368630-mRNA-1
Gene Sequence

>Msa0368630

ATGAAGGCATTGATTCTGGTTGGAGGGTTTGGAACAAGGTTGAGGCCATTGACACTCAGCGTTCCCAAGCCTCTTGTTGATTTTGCTAACAAGCCCATGATTCTGCATCAGATAGAGGCTCTTAAGGACATTGGAGTTACTGAAGTGGTGCTGGCTATCAATTACCAACCAGAGGTGATGTTGAATTTCTTGAAGGACTTTGAGGAAAAGCTCGACATCAAAATCACTTGCTCTCAAGAAACTGAACCATTGGGGACTGCAGGTCCCTTGGCTCTTGCCAGAGATAAGCTGATTGATGGCTCTAGTGAGCCATTTTTTGTTCTCAACAGCGATGTTATCAGTGAGTATCCACTCAAAGAAATGATAGAATTCCACAAATCTCATGGAGGAGAAGCTTCCATAATGGTGACAAAGGTTGACGAGCCATCGAAATATGGTGTAGTTGTTATGGAAGAGACTACCGGGCAGGTTGAGAAATTTGTTGAGAAACCCAAGTTGTTTGTTGGCAACAAAATCAATGCTGGGATCTACCTATTGAACCCCTCAGTTTTGGATCATATTGAACTGAGACCCACTTCTATTGAGAAAGAGGTGTTTCCAAAGATTGCAGCAAACAAAAAGCTATATGCAATGGTTCTGCCTGGATTCTGGATGGACATTGGACAGCCAAGGGACTATATAACAGGTCTGAGACTCTACCTGGACTCACTCAGGAAGAAGACTTCTTCCAAGTTGGCCAGTGGCCCTCACATTTTGGGGAATGTGATTGTGCATGAGACAGCCAAAATTGGCGAGGGATGTCTCATTGGACCTGATGTTGCAATTGGTCCTGGCTGTACTATTGAGTCAGGTGTCAGGCTTTCAAGTTGCACTGTAATGAGAGGAGTTCGGATTAAGAAGCATGCTTGCATATCCAGCAGCATCATCGGGTGGCATTCAACTGTTGGTCAATGGGCTCGCGTGGAGAATATGACTATCCTTGGAGAAGATGTCCATGTATCTGATGAAGTTTACAGCAATGGTGGTGTGGTTTTGCCCCACAAGGAAATCAAAACAAGCATTCTGAATCCAGAGATAGTCATGTGA
Protein sequence

>Msa0368630

MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKDIGVTEVVLAINYQPEVMLNFLKDFEEKLDIKITCSQETEPLGTAGPLALARDKLIDGSSEPFFVLNSDVISEYPLKEMIEFHKSHGGEASIMVTKVDEPSKYGVVVMEETTGQVEKFVEKPKLFVGNKINAGIYLLNPSVLDHIELRPTSIEKEVFPKIAANKKLYAMVLPGFWMDIGQPRDYITGLRLYLDSLRKKTSSKLASGPHILGNVIVHETAKIGEGCLIGPDVAIGPGCTIESGVRLSSCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVSDEVYSNGGVVLPHKEIKTSILNPEIVM*