Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0588500 | XP_013454758.1 | 96.764 | 309 | 10 | 0 | 26 | 334 | 5 | 313 | 0.0 | 612 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0588500 | sp|Q65CJ7|HPPR_PLESU | 73.052 | 308 | 83 | 0 | 27 | 334 | 6 | 313 | 5.97e-165 | 465 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006840 | Msa0588500 | 0.812039 | 5.181106e-51 | -8.615850e-47 |
| Msa0017710 | Msa0588500 | 0.822112 | 2.819635e-53 | -8.615850e-47 |
| Msa0036810 | Msa0588500 | 0.807383 | 5.193217e-50 | -8.615850e-47 |
| Msa0039750 | Msa0588500 | 0.801985 | 6.952716e-49 | -8.615850e-47 |
| Msa0045620 | Msa0588500 | 0.825182 | 5.389036e-54 | -8.615850e-47 |
| Msa0050530 | Msa0588500 | 0.821018 | 5.044893e-53 | -8.615850e-47 |
| Msa0073270 | Msa0588500 | 0.812574 | 3.958229e-51 | -8.615850e-47 |
| Msa0100600 | Msa0588500 | 0.812018 | 5.234669e-51 | -8.615850e-47 |
| Msa0100890 | Msa0588500 | 0.814568 | 1.442247e-51 | -8.615850e-47 |
| Msa0121320 | Msa0588500 | 0.809026 | 2.319396e-50 | -8.615850e-47 |
| Msa0132080 | Msa0588500 | -0.821056 | 4.945366e-53 | -8.615850e-47 |
| Msa0166180 | Msa0588500 | 0.814122 | 1.809315e-51 | -8.615850e-47 |
| Msa0168380 | Msa0588500 | 0.810612 | 1.057218e-50 | -8.615850e-47 |
| Msa0180100 | Msa0588500 | -0.813329 | 2.704981e-51 | -8.615850e-47 |
| Msa0184510 | Msa0588500 | -0.812332 | 4.470977e-51 | -8.615850e-47 |
| Msa0209370 | Msa0588500 | -0.800758 | 1.240294e-48 | -8.615850e-47 |
| Msa0211460 | Msa0588500 | 0.800569 | 1.355254e-48 | -8.615850e-47 |
| Msa0219840 | Msa0588500 | 0.805515 | 1.286253e-49 | -8.615850e-47 |
| Msa0221460 | Msa0588500 | -0.825301 | 5.051924e-54 | -8.615850e-47 |
| Msa0225070 | Msa0588500 | -0.806921 | 6.504958e-50 | -8.615850e-47 |
| Msa0235080 | Msa0588500 | 0.805923 | 1.056078e-49 | -8.615850e-47 |
| Msa0367590 | Msa0588500 | -0.830220 | 3.320347e-55 | -8.615850e-47 |
| Msa0368630 | Msa0588500 | 0.809834 | 1.555411e-50 | -8.615850e-47 |
| Msa0385030 | Msa0588500 | 0.804489 | 2.107904e-49 | -8.615850e-47 |
| Msa0389700 | Msa0588500 | 0.804159 | 2.469636e-49 | -8.615850e-47 |
| Msa0416030 | Msa0588500 | 0.800063 | 1.718408e-48 | -8.615850e-47 |
| Msa0419420 | Msa0588500 | -0.800444 | 1.436930e-48 | -8.615850e-47 |
| Msa0422690 | Msa0588500 | 0.838289 | 3.141230e-57 | -8.615850e-47 |
| Msa0422820 | Msa0588500 | 0.834221 | 3.397190e-56 | -8.615850e-47 |
| Msa0422900 | Msa0588500 | 0.845136 | 4.902879e-59 | -8.615850e-47 |
| Msa0424220 | Msa0588500 | -0.801224 | 9.958172e-49 | -8.615850e-47 |
| Msa0429970 | Msa0588500 | 0.829657 | 4.554360e-55 | -8.615850e-47 |
| Msa0433630 | Msa0588500 | 0.804539 | 2.057717e-49 | -8.615850e-47 |
| Msa0457070 | Msa0588500 | -0.804124 | 2.511543e-49 | -8.615850e-47 |
| Msa0460220 | Msa0588500 | -0.809747 | 1.624148e-50 | -8.615850e-47 |
| Msa0469060 | Msa0588500 | 0.834210 | 3.418222e-56 | -8.615850e-47 |
| Msa0479480 | Msa0588500 | 0.800563 | 1.358809e-48 | -8.615850e-47 |
| Msa0480270 | Msa0588500 | 0.810184 | 1.307649e-50 | -8.615850e-47 |
| Msa0240590 | Msa0588500 | -0.812270 | 4.613633e-51 | -8.615850e-47 |
| Msa0244820 | Msa0588500 | -0.826931 | 2.069397e-54 | -8.615850e-47 |
| Msa0251120 | Msa0588500 | 0.805380 | 1.372962e-49 | -8.615850e-47 |
| Msa0260980 | Msa0588500 | 0.808298 | 3.317681e-50 | -8.615850e-47 |
| Msa0267450 | Msa0588500 | -0.826669 | 2.390200e-54 | -8.615850e-47 |
| Msa0267510 | Msa0588500 | -0.821651 | 3.605784e-53 | -8.615850e-47 |
| Msa0276800 | Msa0588500 | -0.842102 | 3.173738e-58 | -8.615850e-47 |
| Msa0278480 | Msa0588500 | 0.802271 | 6.072070e-49 | -8.615850e-47 |
| Msa0279810 | Msa0588500 | 0.807680 | 4.491732e-50 | -8.615850e-47 |
| Msa0288400 | Msa0588500 | 0.824890 | 6.315467e-54 | -8.615850e-47 |
| Msa0290800 | Msa0588500 | 0.813430 | 2.570167e-51 | -8.615850e-47 |
| Msa0300670 | Msa0588500 | -0.837129 | 6.235487e-57 | -8.615850e-47 |
| Msa0307430 | Msa0588500 | 0.811388 | 7.178893e-51 | -8.615850e-47 |
| Msa0316000 | Msa0588500 | 0.813859 | 2.067846e-51 | -8.615850e-47 |
| Msa0316720 | Msa0588500 | -0.829685 | 4.482067e-55 | -8.615850e-47 |
| Msa0319220 | Msa0588500 | 0.807996 | 3.846648e-50 | -8.615850e-47 |
| Msa0328870 | Msa0588500 | 0.803053 | 4.188844e-49 | -8.615850e-47 |
| Msa0336430 | Msa0588500 | 0.800822 | 1.203425e-48 | -8.615850e-47 |
| Msa0336520 | Msa0588500 | 0.805492 | 1.300586e-49 | -8.615850e-47 |
| Msa0337760 | Msa0588500 | -0.821349 | 4.233374e-53 | -8.615850e-47 |
| Msa0342220 | Msa0588500 | 0.810553 | 1.088830e-50 | -8.615850e-47 |
| Msa0349930 | Msa0588500 | 0.818326 | 2.078063e-52 | -8.615850e-47 |
| Msa0506750 | Msa0588500 | 0.804070 | 2.576894e-49 | -8.615850e-47 |
| Msa0528310 | Msa0588500 | 0.943083 | 2.278928e-102 | -8.615850e-47 |
| Msa0538050 | Msa0588500 | -0.803196 | 3.912536e-49 | -8.615850e-47 |
| Msa0555280 | Msa0588500 | 0.800192 | 1.617446e-48 | -8.615850e-47 |
| Msa0566460 | Msa0588500 | 0.815421 | 9.323387e-52 | -8.615850e-47 |
| Msa0568460 | Msa0588500 | -0.801958 | 7.042973e-49 | -8.615850e-47 |
| Msa0576500 | Msa0588500 | -0.800012 | 1.759947e-48 | -8.615850e-47 |
| Msa0585720 | Msa0588500 | -0.804112 | 2.525768e-49 | -8.615850e-47 |
| Msa0587180 | Msa0588500 | 0.811746 | 6.001624e-51 | -8.615850e-47 |
| Msa0588500 | Msa0605520 | 0.809517 | 1.820037e-50 | -8.615850e-47 |
| Msa0588500 | Msa0612880 | -0.823712 | 1.194817e-53 | -8.615850e-47 |
| Msa0588500 | Msa0618840 | 0.803024 | 4.246120e-49 | -8.615850e-47 |
| Msa0588500 | Msa0618990 | 0.806880 | 6.634723e-50 | -8.615850e-47 |
| Msa0588500 | Msa0623310 | 0.814231 | 1.711612e-51 | -8.615850e-47 |
| Msa0588500 | Msa0623980 | 0.805761 | 1.142012e-49 | -8.615850e-47 |
| Msa0588500 | Msa0625900 | -0.800037 | 1.738923e-48 | -8.615850e-47 |
| Msa0588500 | Msa0658120 | 0.800470 | 1.419590e-48 | -8.615850e-47 |
| Msa0588500 | Msa0659020 | -0.826743 | 2.293928e-54 | -8.615850e-47 |
| Msa0588500 | Msa0663290 | 0.806080 | 9.784799e-50 | -8.615850e-47 |
| Msa0588500 | Msa0664070 | 0.806614 | 7.551747e-50 | -8.615850e-47 |
| Msa0588500 | Msa0673940 | 0.808728 | 2.685133e-50 | -8.615850e-47 |
| Msa0588500 | Msa0685390 | -0.803616 | 3.201671e-49 | -8.615850e-47 |
| Msa0588500 | Msa0704690 | 0.808318 | 3.284340e-50 | -8.615850e-47 |
| Msa0588500 | Msa0705810 | -0.808268 | 3.367493e-50 | -8.615850e-47 |
| Msa0588500 | Msa0706130 | -0.803525 | 3.344323e-49 | -8.615850e-47 |
| Msa0588500 | Msa0732970 | 0.819190 | 1.322453e-52 | -8.615850e-47 |
| Msa0588500 | Msa0751720 | 0.813228 | 2.846873e-51 | -8.615850e-47 |
| Msa0588500 | Msa0761830 | 0.840397 | 8.911713e-58 | -8.615850e-47 |
| Msa0588500 | Msa0773960 | 0.813443 | 2.553240e-51 | -8.615850e-47 |
| Msa0588500 | Msa0775220 | 0.814330 | 1.627536e-51 | -8.615850e-47 |
| Msa0588500 | Msa0802950 | -0.814766 | 1.303543e-51 | -8.615850e-47 |
| Msa0588500 | Msa0804170 | 0.837334 | 5.526441e-57 | -8.615850e-47 |
| Msa0588500 | Msa0822740 | 0.821199 | 4.584952e-53 | -8.615850e-47 |
| Msa0588500 | Msa0842180 | 0.841883 | 3.625471e-58 | -8.615850e-47 |
| Msa0588500 | Msa0846900 | 0.810829 | 9.486630e-51 | -8.615850e-47 |
| Msa0588500 | Msa0847140 | 0.807172 | 5.756464e-50 | -8.615850e-47 |
| Msa0588500 | Msa0871420 | 0.821943 | 3.085101e-53 | -8.615850e-47 |
| Msa0588500 | Msa0967900 | -0.803134 | 4.029582e-49 | -8.615850e-47 |
| Msa0588500 | Msa0981670 | 0.801467 | 8.880428e-49 | -8.615850e-47 |
| Msa0588500 | Msa0991630 | 0.805976 | 1.029287e-49 | -8.615850e-47 |
| Msa0588500 | Msa1026710 | 0.816635 | 4.995215e-52 | -8.615850e-47 |
| Msa0588500 | Msa1050260 | 0.800401 | 1.466647e-48 | -8.615850e-47 |
| Msa0588500 | Msa1078600 | -0.803914 | 2.776622e-49 | -8.615850e-47 |
| Msa0588500 | Msa1083630 | 0.810975 | 8.823268e-51 | -8.615850e-47 |
| Msa0588500 | Msa1093190 | -0.804848 | 1.774217e-49 | -8.615850e-47 |
| Msa0588500 | Msa1122710 | -0.806444 | 8.201814e-50 | -8.615850e-47 |
| Msa0588500 | Msa1127200 | 0.815762 | 7.828616e-52 | -8.615850e-47 |
| Msa0588500 | Msa1163670 | 0.800259 | 1.567642e-48 | -8.615850e-47 |
| Msa0588500 | Msa1165460 | 0.802957 | 4.383235e-49 | -8.615850e-47 |
| Msa0588500 | Msa1170320 | 0.813116 | 3.012557e-51 | -8.615850e-47 |
| Msa0588500 | Msa1186670 | 0.804524 | 2.072855e-49 | -8.615850e-47 |
| Msa0588500 | Msa1190350 | -0.805323 | 1.410861e-49 | -8.615850e-47 |
| Msa0588500 | Msa1191530 | -0.802503 | 5.440412e-49 | -8.615850e-47 |
| Msa0588500 | Msa1205270 | -0.806648 | 7.427465e-50 | -8.615850e-47 |
| Msa0588500 | Msa1217890 | 0.819737 | 9.925481e-53 | -8.615850e-47 |
| Msa0588500 | Msa1220720 | 0.803856 | 2.854689e-49 | -8.615850e-47 |
| Msa0588500 | Msa1228600 | -0.822743 | 2.012083e-53 | -8.615850e-47 |
| Msa0588500 | Msa1243630 | -0.812993 | 3.204426e-51 | -8.615850e-47 |
| Msa0588500 | Msa1244220 | -0.809571 | 1.771717e-50 | -8.615850e-47 |
| Msa0588500 | Msa1255030 | -0.806521 | 7.899475e-50 | -8.615850e-47 |
| Msa0588500 | Msa1265570 | 0.813770 | 2.162783e-51 | -8.615850e-47 |
| Msa0588500 | Msa1266120 | -0.823090 | 1.669943e-53 | -8.615850e-47 |
| Msa0588500 | Msa1288970 | -0.824484 | 7.874961e-54 | -8.615850e-47 |
| Msa0588500 | Msa1297220 | -0.826935 | 2.064644e-54 | -8.615850e-47 |
| Msa0588500 | Msa1321490 | 0.801791 | 7.623028e-49 | -8.615850e-47 |
| Msa0588500 | Msa1323260 | -0.811490 | 6.821684e-51 | -8.615850e-47 |
| Msa0588500 | Msa1328280 | 0.811686 | 6.185026e-51 | -8.615850e-47 |
| Msa0588500 | Msa1334670 | 0.813926 | 1.999060e-51 | -8.615850e-47 |
| Msa0588500 | Msa1342760 | 0.811971 | 5.360551e-51 | -8.615850e-47 |
| Msa0588500 | Msa1343450 | -0.837584 | 4.769653e-57 | -8.615850e-47 |
| Msa0588500 | Msa1352630 | -0.804396 | 2.204258e-49 | -8.615850e-47 |
| Msa0588500 | Msa1365230 | 0.812669 | 3.773770e-51 | -8.615850e-47 |
| Msa0588500 | Msa1367900 | -0.803771 | 2.973459e-49 | -8.615850e-47 |
| Msa0588500 | Msa1369180 | -0.803633 | 3.176683e-49 | -8.615850e-47 |
| Msa0588500 | Msa1371800 | 0.827489 | 1.520597e-54 | -8.615850e-47 |
| Msa0588500 | Msa1372030 | 0.804201 | 2.420385e-49 | -8.615850e-47 |
| Msa0588500 | Msa1376310 | 0.824662 | 7.147151e-54 | -8.615850e-47 |
| Msa0588500 | Msa1379940 | 0.803453 | 3.460570e-49 | -8.615850e-47 |
| Msa0588500 | Msa1381330 | 0.807419 | 5.101204e-50 | -8.615850e-47 |
| Msa0588500 | Msa1413020 | 0.841202 | 5.480697e-58 | -8.615850e-47 |
| Msa0588500 | Msa1427600 | -0.819441 | 1.159664e-52 | -8.615850e-47 |
| Msa0588500 | Msa1431520 | 0.800651 | 1.303818e-48 | -8.615850e-47 |
| Msa0588500 | Msa1449770 | 0.802541 | 5.342895e-49 | -8.615850e-47 |
| Msa0588500 | Msa1450630 | -0.816572 | 5.161285e-52 | -8.615850e-47 |
| Msa0588500 | Msa1460970 | 0.800901 | 1.159420e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0588500 | MtrunA17_Chr4g0004741 | 96.764 | 309 | 10 | 0 | 26 | 334 | 5 | 313 | 0.0 | 612 |
| Msa0588500 | MtrunA17_Chr4g0004721 | 88.636 | 308 | 35 | 0 | 27 | 334 | 7 | 314 | 0.0 | 564 |
| Msa0588500 | MtrunA17_Chr4g0004711 | 88.350 | 309 | 36 | 0 | 26 | 334 | 5 | 313 | 0.0 | 562 |
| Msa0588500 | MtrunA17_Chr4g0004681 | 85.065 | 308 | 43 | 1 | 27 | 334 | 6 | 310 | 0.0 | 542 |
| Msa0588500 | MtrunA17_Chr2g0331641 | 63.211 | 299 | 109 | 1 | 37 | 334 | 16 | 314 | 1.41e-130 | 375 |
| Msa0588500 | MtrunA17_Chr8g0351111 | 42.553 | 282 | 157 | 2 | 58 | 334 | 42 | 323 | 5.15e-84 | 257 |
| Msa0588500 | MtrunA17_Chr8g0351121 | 40.741 | 297 | 166 | 3 | 45 | 334 | 66 | 359 | 1.35e-80 | 249 |
| Msa0588500 | MtrunA17_Chr8g0351141 | 39.414 | 307 | 175 | 3 | 36 | 334 | 23 | 326 | 5.37e-80 | 246 |
| Msa0588500 | MtrunA17_Chr7g0246361 | 44.048 | 252 | 129 | 4 | 82 | 333 | 50 | 289 | 6.97e-65 | 206 |
| Msa0588500 | MtrunA17_Chr1g0210971 | 32.646 | 291 | 170 | 7 | 64 | 329 | 60 | 349 | 1.80e-33 | 127 |
| Msa0588500 | MtrunA17_Chr4g0000511 | 30.116 | 259 | 168 | 4 | 88 | 334 | 151 | 408 | 3.85e-30 | 120 |
| Msa0588500 | MtrunA17_Chr1g0208141 | 29.688 | 256 | 169 | 6 | 88 | 334 | 118 | 371 | 5.87e-29 | 117 |
| Msa0588500 | MtrunA17_Chr3g0077771 | 27.907 | 258 | 163 | 5 | 79 | 316 | 108 | 362 | 1.37e-24 | 102 |
| Msa0588500 | MtrunA17_Chr6g0450811 | 29.134 | 254 | 169 | 6 | 83 | 327 | 116 | 367 | 1.96e-22 | 96.7 |
| Msa0588500 | MtrunA17_Chr7g0248631 | 24.786 | 234 | 165 | 3 | 102 | 325 | 88 | 320 | 5.71e-16 | 79.0 |
| Msa0588500 | MtrunA17_Chr6g0450821 | 25.806 | 248 | 166 | 5 | 83 | 327 | 86 | 318 | 3.91e-15 | 75.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0588500 | AT1G79870.1 | 73.052 | 308 | 83 | 0 | 27 | 334 | 6 | 313 | 2.65e-161 | 453 |
| Msa0588500 | AT1G79870.2 | 68.831 | 308 | 77 | 1 | 27 | 334 | 6 | 294 | 1.04e-144 | 410 |
| Msa0588500 | AT1G12550.1 | 48.026 | 304 | 153 | 3 | 34 | 333 | 18 | 320 | 2.68e-98 | 293 |
| Msa0588500 | AT2G45630.2 | 42.230 | 296 | 168 | 3 | 42 | 334 | 43 | 338 | 2.16e-82 | 253 |
| Msa0588500 | AT1G17745.1 | 32.692 | 260 | 160 | 7 | 88 | 334 | 145 | 402 | 9.54e-33 | 128 |
| Msa0588500 | AT1G68010.1 | 31.379 | 290 | 175 | 5 | 64 | 329 | 60 | 349 | 2.78e-31 | 121 |
| Msa0588500 | AT4G34200.1 | 30.859 | 256 | 166 | 6 | 88 | 334 | 124 | 377 | 5.37e-31 | 123 |
| Msa0588500 | AT1G68010.3 | 31.884 | 276 | 164 | 5 | 64 | 315 | 60 | 335 | 1.34e-30 | 119 |
| Msa0588500 | AT1G68010.2 | 31.271 | 291 | 175 | 6 | 64 | 329 | 60 | 350 | 1.34e-29 | 117 |
| Msa0588500 | AT3G19480.1 | 30.078 | 256 | 168 | 6 | 88 | 334 | 109 | 362 | 1.03e-28 | 116 |
| Msa0588500 | AT1G17745.2 | 29.965 | 287 | 159 | 9 | 88 | 334 | 145 | 429 | 8.86e-27 | 111 |
| Msa0588500 | AT1G72190.1 | 29.644 | 253 | 158 | 5 | 79 | 316 | 106 | 353 | 5.63e-25 | 104 |
| Msa0588500 | AT5G14780.3 | 30.041 | 243 | 161 | 5 | 97 | 331 | 102 | 343 | 1.10e-23 | 100 |
| Msa0588500 | AT5G14780.2 | 30.041 | 243 | 161 | 5 | 97 | 331 | 114 | 355 | 1.39e-23 | 100 |
| Msa0588500 | AT5G14780.1 | 30.041 | 243 | 161 | 5 | 97 | 331 | 128 | 369 | 1.76e-23 | 100 |
| Msa0588500 | AT2G45630.1 | 34.959 | 123 | 78 | 2 | 42 | 162 | 43 | 165 | 7.38e-20 | 86.3 |
| Msa0588500 | AT5G28310.1 | 33.846 | 195 | 73 | 7 | 144 | 334 | 91 | 233 | 5.95e-19 | 84.7 |
| Msa0588500 | AT1G01510.1 | 23.629 | 237 | 168 | 3 | 102 | 325 | 96 | 332 | 1.11e-13 | 72.4 |
Find 106 sgRNAs with CRISPR-Local
Find 219 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGAAAACCATTGGCATTAT+TGG | 0.108448 | 4_2:+10668304 | Msa0588500:CDS |
| CTTGGATAGTACTTGTATTT+TGG | 0.175534 | 4_2:-10668415 | None:intergenic |
| CATGTTCCCGAAGAACTATT+TGG | 0.241347 | 4_2:+10668661 | Msa0588500:CDS |
| GCTACAATCTTTATCGCATT+TGG | 0.249078 | 4_2:+10665872 | Msa0588500:CDS |
| GACTGATGATGTTGCTGATT+TGG | 0.253175 | 4_2:+10666104 | Msa0588500:CDS |
| TATAGATCCCATTAGGGTTT+GGG | 0.276310 | 4_2:-10665792 | None:intergenic |
| TGCATTACTTGAAGGTCGTT+TGG | 0.291318 | 4_2:+10668603 | Msa0588500:CDS |
| TACCTCGGCCAATGTTAATT+AGG | 0.297605 | 4_2:-10668552 | None:intergenic |
| TTGAGTTCTTGATCTAAGTA+TGG | 0.305679 | 4_2:-10665844 | None:intergenic |
| TACGCTTCTTCGGAGGATTT+CGG | 0.309133 | 4_2:+10666143 | Msa0588500:CDS |
| GATTTGTTAGAAGTGGAAAT+TGG | 0.327940 | 4_2:+10666175 | Msa0588500:CDS |
| CTACAATCTTTATCGCATTT+GGG | 0.335483 | 4_2:+10665873 | Msa0588500:CDS |
| CTATAGATCCCATTAGGGTT+TGG | 0.340695 | 4_2:-10665793 | None:intergenic |
| AGATCTCTATAGATCCCATT+AGG | 0.343343 | 4_2:-10665799 | None:intergenic |
| TCTCAAAACCCAAACCCTAA+TGG | 0.350798 | 4_2:+10665784 | Msa0588500:CDS |
| TTCTAGCCCAAATAGTTCTT+CGG | 0.356251 | 4_2:-10668668 | None:intergenic |
| TCTAGCCCAAATAGTTCTTC+GGG | 0.361285 | 4_2:-10668667 | None:intergenic |
| CTCAAAACCCAAACCCTAAT+GGG | 0.373521 | 4_2:+10665785 | Msa0588500:CDS |
| GCATTACTTGAAGGTCGTTT+GGG | 0.382800 | 4_2:+10668604 | Msa0588500:CDS |
| GCCATGGCCGACCTTCTTCT+AGG | 0.398609 | 4_2:+10668742 | Msa0588500:CDS |
| TCATTAGCGATTTACCTTAG+TGG | 0.398667 | 4_2:-10666220 | None:intergenic |
| AACTTGGAGGCTCATTTCCT+TGG | 0.398981 | 4_2:+10668766 | Msa0588500:CDS |
| ATTAAAACCTTCAGCTCTCT+TGG | 0.401991 | 4_2:-10668353 | None:intergenic |
| GTTTGATCCTTACGCTTCTT+CGG | 0.404719 | 4_2:+10666133 | Msa0588500:CDS |
| ACCATTGGCATTATTGGAAT+GGG | 0.410967 | 4_2:+10668310 | Msa0588500:CDS |
| CATTGACCTAGAAAATTTGA+TGG | 0.416063 | 4_2:+10668859 | Msa0588500:three_prime_UTR |
| ATGTTCCCGAAGAACTATTT+GGG | 0.421570 | 4_2:+10668662 | Msa0588500:CDS |
| CGGGAGGTCATTAATGCAAT+TGG | 0.423538 | 4_2:+10668517 | Msa0588500:CDS |
| CTTTGGAGTTCTAGAATAGT+AGG | 0.425937 | 4_2:-10668386 | None:intergenic |
| ACCTAGAAAATTTGATGGAA+TGG | 0.433685 | 4_2:+10668864 | Msa0588500:three_prime_UTR |
| AACCATTGGCATTATTGGAA+TGG | 0.435784 | 4_2:+10668309 | Msa0588500:CDS |
| ACTATGGACATAAAATTGAT+TGG | 0.437851 | 4_2:+10668835 | Msa0588500:three_prime_UTR |
| GATCTCTATAGATCCCATTA+GGG | 0.438557 | 4_2:-10665798 | None:intergenic |
| AAACTCATCACATCATCAAC+CGG | 0.440972 | 4_2:+10668497 | Msa0588500:CDS |
| CTTAACAAGTGTAAGGAGAA+AGG | 0.448740 | 4_2:+10666051 | Msa0588500:CDS |
| CGACCTTCTTCTAGGAAACT+TGG | 0.454624 | 4_2:+10668750 | Msa0588500:CDS |
| AGCATCCAACTGCGACATAC+TGG | 0.457202 | 4_2:+10668450 | Msa0588500:CDS |
| CTGGTCTCTGCATTACTTGA+AGG | 0.461779 | 4_2:+10668595 | Msa0588500:CDS |
| GAAGGTCGTTTGGGTGGTGC+TGG | 0.462451 | 4_2:+10668613 | Msa0588500:CDS |
| AAAGCCACTGTTAACTCCCT+TGG | 0.464385 | 4_2:+10668789 | Msa0588500:CDS |
| TGAGTTGCAGAGAGTTCGAT+TGG | 0.465722 | 4_2:-10665758 | None:intergenic |
| TGATGAGTTTCCTCTGTAAG+AGG | 0.469038 | 4_2:-10668484 | None:intergenic |
| ATCAACACCAACGCTATAGC+TGG | 0.469096 | 4_2:-10666019 | None:intergenic |
| CTGGAAACAATCTCAAGCTT+CGG | 0.481879 | 4_2:-10666000 | None:intergenic |
| ATTATTGGAATGGGAAGGAT+TGG | 0.483559 | 4_2:+10668319 | Msa0588500:CDS |
| TTAACAAGTGTAAGGAGAAA+GGG | 0.494005 | 4_2:+10666052 | Msa0588500:CDS |
| TGTGATCGATTTGTTAGAAG+TGG | 0.496921 | 4_2:+10666168 | Msa0588500:CDS |
| TGCTTCAATGAGGTTAGAAT+CGG | 0.502193 | 4_2:-10665974 | None:intergenic |
| GATTGATCTTAACAAGTGTA+AGG | 0.511207 | 4_2:+10666044 | Msa0588500:CDS |
| ACTCTTGTGATGTGGATTTG+AGG | 0.511668 | 4_2:+10668916 | Msa0588500:three_prime_UTR |
| ACATCATCAGTCAAAACATC+AGG | 0.513625 | 4_2:-10666093 | None:intergenic |
| ATGTTAATTAGGACACCCTT+CGG | 0.518527 | 4_2:-10668541 | None:intergenic |
| GCGTCAATTCGTGCGGTGGT+CGG | 0.520525 | 4_2:+10665934 | Msa0588500:CDS |
| TCCCATTCCAATAATGCCAA+TGG | 0.521994 | 4_2:-10668311 | None:intergenic |
| CAGTTCTCTGGGAAAACCAT+TGG | 0.522702 | 4_2:+10668295 | Msa0588500:intron |
| GCAGTTGCCAAGAGAGCTGA+AGG | 0.536835 | 4_2:+10668346 | Msa0588500:CDS |
| TTATTGCCTCATGTTGGAAG+CGG | 0.540920 | 4_2:+10668700 | Msa0588500:CDS |
| GATTGGGATCACGAAGATGC+AGG | 0.543713 | 4_2:-10665741 | None:intergenic |
| GCATGTTGATGAACCAGAGC+TGG | 0.545737 | 4_2:+10668576 | Msa0588500:CDS |
| CATTAATGCAATTGGTCCGA+AGG | 0.549098 | 4_2:+10668525 | Msa0588500:CDS |
| CCTCCAAGTTTCCTAGAAGA+AGG | 0.549489 | 4_2:-10668753 | None:intergenic |
| GTGGTCGGAAATGCAAGCGC+CGG | 0.549559 | 4_2:+10665949 | Msa0588500:CDS |
| TCCTAGAAGAAGGTCGGCCA+TGG | 0.550756 | 4_2:-10668743 | None:intergenic |
| CCTTCTTCTAGGAAACTTGG+AGG | 0.552158 | 4_2:+10668753 | Msa0588500:CDS |
| GATGCTAACTCAACAAGACT+TGG | 0.554749 | 4_2:-10668433 | None:intergenic |
| GGTAGAAACTCGAGCTGCCA+TGG | 0.556384 | 4_2:+10668726 | Msa0588500:CDS |
| GAGTTAACAGTGGCTTTCCA+AGG | 0.557323 | 4_2:-10668783 | None:intergenic |
| ACTTTAGTCAAGAAATTACC+TGG | 0.561795 | 4_2:+10669047 | Msa0588500:three_prime_UTR |
| CAATTGCATTAATGACCTCC+CGG | 0.564836 | 4_2:-10668516 | None:intergenic |
| GTCCTAATTAACATTGGCCG+AGG | 0.565769 | 4_2:+10668550 | Msa0588500:CDS |
| TGTTGCCTGCCCTCTTACAG+AGG | 0.566261 | 4_2:+10668474 | Msa0588500:CDS |
| AGTTTCCTCTGTAAGAGGGC+AGG | 0.567739 | 4_2:-10668479 | None:intergenic |
| GAGTTGCAGAGAGTTCGATT+GGG | 0.568148 | 4_2:-10665757 | None:intergenic |
| AATTAGCGACTCTTGTGATG+TGG | 0.569237 | 4_2:+10668908 | Msa0588500:three_prime_UTR |
| AGTAATGCAGAGACCAGCTC+TGG | 0.572833 | 4_2:-10668589 | None:intergenic |
| TTGGCATTATTGGAATGGGA+AGG | 0.585206 | 4_2:+10668314 | Msa0588500:CDS |
| TTATGTCCATAGTTCAAAAG+CGG | 0.585507 | 4_2:-10668825 | None:intergenic |
| TGATTATAAGTTGACCACTA+AGG | 0.587990 | 4_2:+10666206 | Msa0588500:CDS |
| CTATTCTAGAACTCCAAAGC+AGG | 0.594716 | 4_2:+10668390 | Msa0588500:CDS |
| CGGCGCGTCAATTCGTGCGG+TGG | 0.598767 | 4_2:+10665930 | Msa0588500:CDS |
| GCCTCATGTTGGAAGCGGCA+CGG | 0.602877 | 4_2:+10668705 | Msa0588500:CDS |
| AAATCCTCCGAAGAAGCGTA+AGG | 0.604514 | 4_2:-10666140 | None:intergenic |
| ATTGTTTCCAGCTATAGCGT+TGG | 0.607959 | 4_2:+10666012 | Msa0588500:CDS |
| AACAACCAGTATGTCGCAGT+TGG | 0.611894 | 4_2:-10668455 | None:intergenic |
| CGGCATGCAGATTAAACCAA+GGG | 0.612509 | 4_2:-10668805 | None:intergenic |
| AATAGTTCTTCGGGAACATG+AGG | 0.622864 | 4_2:-10668658 | None:intergenic |
| TAATTGATGATGTAACTGAA+TGG | 0.622931 | 4_2:-10668890 | None:intergenic |
| AAGGGTGTCCTAATTAACAT+TGG | 0.623755 | 4_2:+10668544 | Msa0588500:CDS |
| ACCGTGCCGCTTCCAACATG+AGG | 0.623796 | 4_2:-10668706 | None:intergenic |
| TGATCCTTACGCTTCTTCGG+AGG | 0.626638 | 4_2:+10666136 | Msa0588500:CDS |
| ATTAATGCAATTGGTCCGAA+GGG | 0.631084 | 4_2:+10668526 | Msa0588500:CDS |
| GTTGTCTTATTGCCTCATGT+TGG | 0.632321 | 4_2:+10668694 | Msa0588500:CDS |
| CAAGTTTCCTAGAAGAAGGT+CGG | 0.637549 | 4_2:-10668749 | None:intergenic |
| ATAACGAAAGCTATTTCACC+AGG | 0.642081 | 4_2:-10669065 | None:intergenic |
| AATGAGGTTAGAATCGGCGC+CGG | 0.642307 | 4_2:-10665968 | None:intergenic |
| GATGAGTTTCCTCTGTAAGA+GGG | 0.642427 | 4_2:-10668483 | None:intergenic |
| GCTTCGGCAATGCTTCAATG+AGG | 0.644180 | 4_2:-10665984 | None:intergenic |
| TTACTTGAAGGTCGTTTGGG+TGG | 0.644249 | 4_2:+10668607 | Msa0588500:CDS |
| AACTCATCACATCATCAACC+GGG | 0.655089 | 4_2:+10668498 | Msa0588500:CDS |
| AGAAGTGGAAATTGGAAGCG+CGG | 0.655741 | 4_2:+10666183 | Msa0588500:CDS |
| GTTCATCAACATGCTTACCT+CGG | 0.658095 | 4_2:-10668567 | None:intergenic |
| GCGGCATGCAGATTAAACCA+AGG | 0.659732 | 4_2:-10668806 | None:intergenic |
| ACACGGCGCGTCAATTCGTG+CGG | 0.666825 | 4_2:+10665927 | Msa0588500:CDS |
| TAAACCAAGGGAGTTAACAG+TGG | 0.668491 | 4_2:-10668793 | None:intergenic |
| ATGGAATTACTTTAGCTACG+AGG | 0.743135 | 4_2:-10665825 | None:intergenic |
| TCATCACATCATCAACCGGG+AGG | 0.750770 | 4_2:+10668501 | Msa0588500:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTGTAAATATTGAAATAT+AGG | - | chr4_2:10668069-10668088 | None:intergenic | 10.0% |
| !!! | TGAAAAAATAAATTATTTTC+AGG | - | chr4_2:10668259-10668278 | None:intergenic | 10.0% |
| !!! | AAATAATTTATTTTTTCATC+CGG | + | chr4_2:10668261-10668280 | Msa0588500:intron | 10.0% |
| !!! | TTTTTCAATTAAGAATACAA+AGG | - | chr4_2:10666477-10666496 | None:intergenic | 15.0% |
| !!! | ACATACATTAAATATGTTTT+AGG | + | chr4_2:10667080-10667099 | Msa0588500:intron | 15.0% |
| !!! | TTTATTGATAATGTATCTTA+TGG | + | chr4_2:10667726-10667745 | Msa0588500:intron | 15.0% |
| !! | TTATTAAAAGAACCTATTAA+TGG | - | chr4_2:10667989-10668008 | None:intergenic | 15.0% |
| !! | AGTGAAAAACATTTAAAAAT+TGG | + | chr4_2:10668108-10668127 | Msa0588500:intron | 15.0% |
| !!! | AAAATAAATTATTTTCAGGT+TGG | - | chr4_2:10668255-10668274 | None:intergenic | 15.0% |
| !!! | TTAAAAGTTGAGATTTTTGT+GGG | - | chr4_2:10665903-10665922 | None:intergenic | 20.0% |
| !! | TGTTATACTCTTAAAAATTG+TGG | + | chr4_2:10666275-10666294 | Msa0588500:intron | 20.0% |
| !! | ATAAACTATAAGCTCAAAAA+TGG | - | chr4_2:10666330-10666349 | None:intergenic | 20.0% |
| !! | AAAAAATAAGTCAATCCAAA+CGG | - | chr4_2:10666787-10666806 | None:intergenic | 20.0% |
| !!! | TACATTAAATATGTTTTAGG+TGG | + | chr4_2:10667083-10667102 | Msa0588500:intron | 20.0% |
| !! | AATCATAATGTTAACTGTTT+CGG | + | chr4_2:10667241-10667260 | Msa0588500:intron | 20.0% |
| !! | AATATCATGTTATTCATTGT+AGG | + | chr4_2:10667500-10667519 | Msa0588500:intron | 20.0% |
| !! | ATATCATGTTATTCATTGTA+GGG | + | chr4_2:10667501-10667520 | Msa0588500:intron | 20.0% |
| !! | GTTAAAAGTTGAGATTTTTG+TGG | - | chr4_2:10665904-10665923 | None:intergenic | 25.0% |
| ! | TTTGATTGAAAAGACATGTT+TGG | + | chr4_2:10666377-10666396 | Msa0588500:intron | 25.0% |
| !! | ATGTTGTTTGGTATATTTAG+CGG | - | chr4_2:10666561-10666580 | None:intergenic | 25.0% |
| ! | GCTAATTGAATTATGTTGTT+TGG | - | chr4_2:10666573-10666592 | None:intergenic | 25.0% |
| ! | GCTAATTGAATTATGTTGTT+TGG | - | chr4_2:10666573-10666592 | None:intergenic | 25.0% |
| ! | AGTGAAAAATTGTGAATAGA+TGG | - | chr4_2:10666754-10666773 | None:intergenic | 25.0% |
| ! | TATTATTCATAAGCATGTCA+AGG | - | chr4_2:10666914-10666933 | None:intergenic | 25.0% |
| ! | AATAAATTAGCCAATCCAAA+CGG | + | chr4_2:10666976-10666995 | Msa0588500:intron | 25.0% |
| !!! | TGGAACATAGTTTTAAATTG+TGG | + | chr4_2:10667103-10667122 | Msa0588500:intron | 25.0% |
| ! | ATAATGTATCTTATGGTTCA+TGG | + | chr4_2:10667733-10667752 | Msa0588500:intron | 25.0% |
| !!! | ATTATTTTCAGGTTGGAAAA+TGG | - | chr4_2:10668248-10668267 | None:intergenic | 25.0% |
| ! | ACTATGGACATAAAATTGAT+TGG | + | chr4_2:10668835-10668854 | Msa0588500:three_prime_UTR | 25.0% |
| !!! | TAATTGATGATGTAACTGAA+TGG | - | chr4_2:10668893-10668912 | None:intergenic | 25.0% |
| TTGAGTTCTTGATCTAAGTA+TGG | - | chr4_2:10665847-10665866 | None:intergenic | 30.0% | |
| CTACAATCTTTATCGCATTT+GGG | + | chr4_2:10665873-10665892 | Msa0588500:CDS | 30.0% | |
| !! | TCTCAACTTTTAACTCAACA+CGG | + | chr4_2:10665910-10665929 | Msa0588500:CDS | 30.0% |
| GATTGATCTTAACAAGTGTA+AGG | + | chr4_2:10666044-10666063 | Msa0588500:CDS | 30.0% | |
| TTAACAAGTGTAAGGAGAAA+GGG | + | chr4_2:10666052-10666071 | Msa0588500:CDS | 30.0% | |
| !! | GATTTGTTAGAAGTGGAAAT+TGG | + | chr4_2:10666175-10666194 | Msa0588500:CDS | 30.0% |
| ! | TGATTATAAGTTGACCACTA+AGG | + | chr4_2:10666206-10666225 | Msa0588500:CDS | 30.0% |
| !! | AAATTGTGGTCTAGTTCTAT+AGG | + | chr4_2:10666289-10666308 | Msa0588500:intron | 30.0% |
| TTGGTATATTTAGCTGATAG+CGG | - | chr4_2:10666625-10666644 | None:intergenic | 30.0% | |
| ! | AGTTAGCTTATAGATGATAG+CGG | - | chr4_2:10666696-10666715 | None:intergenic | 30.0% |
| ATAAATTAGCCAATCCAAAC+GGG | + | chr4_2:10666977-10666996 | Msa0588500:intron | 30.0% | |
| TAGAGACACAATAAGACTTA+GGG | - | chr4_2:10667003-10667022 | None:intergenic | 30.0% | |
| !! | TAAGTCTTATTGTGTCTCTA+GGG | + | chr4_2:10667003-10667022 | Msa0588500:intron | 30.0% |
| ! | ACATGCATGGAAATTGTTTT+AGG | + | chr4_2:10667132-10667151 | Msa0588500:intron | 30.0% |
| !!! | AGCAGCATAGTTTTAAATTG+TGG | + | chr4_2:10667156-10667175 | Msa0588500:intron | 30.0% |
| CTTGACTGAGTTTGATAAAA+AGG | + | chr4_2:10667464-10667483 | Msa0588500:intron | 30.0% | |
| ! | AAATACAGCTTCATTTTGCA+GGG | - | chr4_2:10667557-10667576 | None:intergenic | 30.0% |
| TACATGAGAATACACATAAC+CGG | - | chr4_2:10668209-10668228 | None:intergenic | 30.0% | |
| ! | CTTGGATAGTACTTGTATTT+TGG | - | chr4_2:10668418-10668437 | None:intergenic | 30.0% |
| TTATGTCCATAGTTCAAAAG+CGG | - | chr4_2:10668828-10668847 | None:intergenic | 30.0% | |
| ! | CATCAAATTTTCTAGGTCAA+TGG | - | chr4_2:10668861-10668880 | None:intergenic | 30.0% |
| CATTGACCTAGAAAATTTGA+TGG | + | chr4_2:10668859-10668878 | Msa0588500:three_prime_UTR | 30.0% | |
| ACCTAGAAAATTTGATGGAA+TGG | + | chr4_2:10668864-10668883 | Msa0588500:three_prime_UTR | 30.0% | |
| ! | ACCATTCCATCAAATTTTCT+AGG | - | chr4_2:10668868-10668887 | None:intergenic | 30.0% |
| ACTTTAGTCAAGAAATTACC+TGG | + | chr4_2:10669047-10669066 | Msa0588500:three_prime_UTR | 30.0% | |
| TATAGATCCCATTAGGGTTT+GGG | - | chr4_2:10665795-10665814 | None:intergenic | 35.0% | |
| GATCTCTATAGATCCCATTA+GGG | - | chr4_2:10665801-10665820 | None:intergenic | 35.0% | |
| AGATCTCTATAGATCCCATT+AGG | - | chr4_2:10665802-10665821 | None:intergenic | 35.0% | |
| ATGGAATTACTTTAGCTACG+AGG | - | chr4_2:10665828-10665847 | None:intergenic | 35.0% | |
| GCTACAATCTTTATCGCATT+TGG | + | chr4_2:10665872-10665891 | Msa0588500:CDS | 35.0% | |
| TGCTTCAATGAGGTTAGAAT+CGG | - | chr4_2:10665977-10665996 | None:intergenic | 35.0% | |
| CTTAACAAGTGTAAGGAGAA+AGG | + | chr4_2:10666051-10666070 | Msa0588500:CDS | 35.0% | |
| ACATCATCAGTCAAAACATC+AGG | - | chr4_2:10666096-10666115 | None:intergenic | 35.0% | |
| !! | TGTGATCGATTTGTTAGAAG+TGG | + | chr4_2:10666168-10666187 | Msa0588500:CDS | 35.0% |
| TCATTAGCGATTTACCTTAG+TGG | - | chr4_2:10666223-10666242 | None:intergenic | 35.0% | |
| !! | TCTAGTTCTATAGGTCTGTT+TGG | + | chr4_2:10666298-10666317 | Msa0588500:intron | 35.0% |
| ! | AGCTAGCTTATAGATGATAG+CGG | - | chr4_2:10666729-10666748 | None:intergenic | 35.0% |
| CTAGAGACACAATAAGACTT+AGG | - | chr4_2:10667004-10667023 | None:intergenic | 35.0% | |
| !! | CTAAGTCTTATTGTGTCTCT+AGG | + | chr4_2:10667002-10667021 | Msa0588500:intron | 35.0% |
| ! | CACAGCTGAAACATAGTTTT+AGG | + | chr4_2:10667052-10667071 | Msa0588500:intron | 35.0% |
| TTCTCTGCAATATCAAGACT+TGG | + | chr4_2:10667270-10667289 | Msa0588500:intron | 35.0% | |
| GAGTATAGTAGTGCTCTATT+AGG | + | chr4_2:10667292-10667311 | Msa0588500:intron | 35.0% | |
| TGATGAAGAGTGGAGATAAA+GGG | - | chr4_2:10667320-10667339 | None:intergenic | 35.0% | |
| ATGATGAAGAGTGGAGATAA+AGG | - | chr4_2:10667321-10667340 | None:intergenic | 35.0% | |
| TTTATCTCCACTCTTCATCA+TGG | + | chr4_2:10667320-10667339 | Msa0588500:intron | 35.0% | |
| ! | ATGAGTTGACGTTTCTAGAT+AGG | + | chr4_2:10667368-10667387 | Msa0588500:intron | 35.0% |
| ! | CAAATACAGCTTCATTTTGC+AGG | - | chr4_2:10667558-10667577 | None:intergenic | 35.0% |
| TTTCTGAATCTCACGTAGTT+AGG | + | chr4_2:10667581-10667600 | Msa0588500:intron | 35.0% | |
| GTGAATCTCATTGAATTGCA+CGG | + | chr4_2:10667608-10667627 | Msa0588500:intron | 35.0% | |
| ! | GAATCTCGATTTGATAACCT+CGG | + | chr4_2:10667808-10667827 | Msa0588500:intron | 35.0% |
| TGAACAAAAGAGTAGGTCTT+GGG | - | chr4_2:10667848-10667867 | None:intergenic | 35.0% | |
| AAAGGAGTGAACAAAAGAGT+AGG | - | chr4_2:10667855-10667874 | None:intergenic | 35.0% | |
| ! | CTCTTTTGTTCACTCCTTTT+TGG | + | chr4_2:10667856-10667875 | Msa0588500:intron | 35.0% |
| TTGTTGGAAGATTGCCAAAA+AGG | - | chr4_2:10667873-10667892 | None:intergenic | 35.0% | |
| ATGCAGTAGTGATCCTTAAT+GGG | - | chr4_2:10667939-10667958 | None:intergenic | 35.0% | |
| TATGCAGTAGTGATCCTTAA+TGG | - | chr4_2:10667940-10667959 | None:intergenic | 35.0% | |
| TGATCTATCATCATGTTGCA+AGG | + | chr4_2:10668137-10668156 | Msa0588500:intron | 35.0% | |
| GATCTATCATCATGTTGCAA+GGG | + | chr4_2:10668138-10668157 | Msa0588500:intron | 35.0% | |
| !!! | TTTTCAGGTTGGAAAATGGA+GGG | - | chr4_2:10668244-10668263 | None:intergenic | 35.0% |
| !!! | ATTTTCAGGTTGGAAAATGG+AGG | - | chr4_2:10668245-10668264 | None:intergenic | 35.0% |
| ! | TATTTTCGTTGCAGTTCTCT+GGG | + | chr4_2:10668284-10668303 | Msa0588500:intron | 35.0% |
| AACCATTGGCATTATTGGAA+TGG | + | chr4_2:10668309-10668328 | Msa0588500:CDS | 35.0% | |
| ACCATTGGCATTATTGGAAT+GGG | + | chr4_2:10668310-10668329 | Msa0588500:CDS | 35.0% | |
| ATTATTGGAATGGGAAGGAT+TGG | + | chr4_2:10668319-10668338 | Msa0588500:CDS | 35.0% | |
| ATTAAAACCTTCAGCTCTCT+TGG | - | chr4_2:10668356-10668375 | None:intergenic | 35.0% | |
| !! | CTTTGGAGTTCTAGAATAGT+AGG | - | chr4_2:10668389-10668408 | None:intergenic | 35.0% |
| !!! | TTGTATTTTGGTTCCTGCTT+TGG | - | chr4_2:10668406-10668425 | None:intergenic | 35.0% |
| AAACTCATCACATCATCAAC+CGG | + | chr4_2:10668497-10668516 | Msa0588500:CDS | 35.0% | |
| ATTAATGCAATTGGTCCGAA+GGG | + | chr4_2:10668526-10668545 | Msa0588500:CDS | 35.0% | |
| ATGTTAATTAGGACACCCTT+CGG | - | chr4_2:10668544-10668563 | None:intergenic | 35.0% | |
| !! | AAGGGTGTCCTAATTAACAT+TGG | + | chr4_2:10668544-10668563 | Msa0588500:CDS | 35.0% |
| ATGTTCCCGAAGAACTATTT+GGG | + | chr4_2:10668662-10668681 | Msa0588500:CDS | 35.0% | |
| TTCTAGCCCAAATAGTTCTT+CGG | - | chr4_2:10668671-10668690 | None:intergenic | 35.0% | |
| TCTCAAAACCCAAACCCTAA+TGG | + | chr4_2:10665784-10665803 | Msa0588500:CDS | 40.0% | |
| CTCAAAACCCAAACCCTAAT+GGG | + | chr4_2:10665785-10665804 | Msa0588500:CDS | 40.0% | |
| CTATAGATCCCATTAGGGTT+TGG | - | chr4_2:10665796-10665815 | None:intergenic | 40.0% | |
| CTGGAAACAATCTCAAGCTT+CGG | - | chr4_2:10666003-10666022 | None:intergenic | 40.0% | |
| ATTGTTTCCAGCTATAGCGT+TGG | + | chr4_2:10666012-10666031 | Msa0588500:CDS | 40.0% | |
| ! | GACTGATGATGTTGCTGATT+TGG | + | chr4_2:10666104-10666123 | Msa0588500:CDS | 40.0% |
| GTTTGATCCTTACGCTTCTT+CGG | + | chr4_2:10666133-10666152 | Msa0588500:CDS | 40.0% | |
| !! | TCACTAAACAAAGTGCCGTT+TGG | + | chr4_2:10666769-10666788 | Msa0588500:intron | 40.0% |
| TCGATAACCATGATGAAGAG+TGG | - | chr4_2:10667330-10667349 | None:intergenic | 40.0% | |
| TGCTGAAACACGAGTTTGTA+TGG | - | chr4_2:10667405-10667424 | None:intergenic | 40.0% | |
| TGCATCCACAAACCAATTTG+AGG | + | chr4_2:10667649-10667668 | Msa0588500:intron | 40.0% | |
| GCATCCACAAACCAATTTGA+GGG | + | chr4_2:10667650-10667669 | Msa0588500:intron | 40.0% | |
| !! | AAGTCCCTCAAATTGGTTTG+TGG | - | chr4_2:10667657-10667676 | None:intergenic | 40.0% |
| ACAAACCAATTTGAGGGACT+TGG | + | chr4_2:10667656-10667675 | Msa0588500:intron | 40.0% | |
| AGAAACCAAGTCCCTCAAAT+TGG | - | chr4_2:10667664-10667683 | None:intergenic | 40.0% | |
| GTGAACAAAAGAGTAGGTCT+TGG | - | chr4_2:10667849-10667868 | None:intergenic | 40.0% | |
| ! | AGATGTTTCTACTGCCTACT+GGG | - | chr4_2:10667898-10667917 | None:intergenic | 40.0% |
| GTGATCCAATTCACCCATTA+AGG | + | chr4_2:10667923-10667942 | Msa0588500:intron | 40.0% | |
| ! | GTGATCCTTAATGGGTGAAT+TGG | - | chr4_2:10667931-10667950 | None:intergenic | 40.0% |
| GTCACACTGCTCATTAAAAC+CGG | + | chr4_2:10668187-10668206 | Msa0588500:intron | 40.0% | |
| !! | TTTCAGGTTGGAAAATGGAG+GGG | - | chr4_2:10668243-10668262 | None:intergenic | 40.0% |
| GAGAACTGCAACGAAAATAC+CGG | - | chr4_2:10668283-10668302 | None:intergenic | 40.0% | |
| ! | GTATTTTCGTTGCAGTTCTC+TGG | + | chr4_2:10668283-10668302 | Msa0588500:intron | 40.0% |
| GGGAAAACCATTGGCATTAT+TGG | + | chr4_2:10668304-10668323 | Msa0588500:CDS | 40.0% | |
| TCCCATTCCAATAATGCCAA+TGG | - | chr4_2:10668314-10668333 | None:intergenic | 40.0% | |
| TTGGCATTATTGGAATGGGA+AGG | + | chr4_2:10668314-10668333 | Msa0588500:CDS | 40.0% | |
| !! | CTATTCTAGAACTCCAAAGC+AGG | + | chr4_2:10668390-10668409 | Msa0588500:CDS | 40.0% |
| GATGCTAACTCAACAAGACT+TGG | - | chr4_2:10668436-10668455 | None:intergenic | 40.0% | |
| GATGAGTTTCCTCTGTAAGA+GGG | - | chr4_2:10668486-10668505 | None:intergenic | 40.0% | |
| TGATGAGTTTCCTCTGTAAG+AGG | - | chr4_2:10668487-10668506 | None:intergenic | 40.0% | |
| AACTCATCACATCATCAACC+GGG | + | chr4_2:10668498-10668517 | Msa0588500:CDS | 40.0% | |
| CAATTGCATTAATGACCTCC+CGG | - | chr4_2:10668519-10668538 | None:intergenic | 40.0% | |
| CATTAATGCAATTGGTCCGA+AGG | + | chr4_2:10668525-10668544 | Msa0588500:CDS | 40.0% | |
| TACCTCGGCCAATGTTAATT+AGG | - | chr4_2:10668555-10668574 | None:intergenic | 40.0% | |
| GTTCATCAACATGCTTACCT+CGG | - | chr4_2:10668570-10668589 | None:intergenic | 40.0% | |
| TGCATTACTTGAAGGTCGTT+TGG | + | chr4_2:10668603-10668622 | Msa0588500:CDS | 40.0% | |
| GCATTACTTGAAGGTCGTTT+GGG | + | chr4_2:10668604-10668623 | Msa0588500:CDS | 40.0% | |
| AATAGTTCTTCGGGAACATG+AGG | - | chr4_2:10668661-10668680 | None:intergenic | 40.0% | |
| CATGTTCCCGAAGAACTATT+TGG | + | chr4_2:10668661-10668680 | Msa0588500:CDS | 40.0% | |
| TCTAGCCCAAATAGTTCTTC+GGG | - | chr4_2:10668670-10668689 | None:intergenic | 40.0% | |
| ! | GTTGTCTTATTGCCTCATGT+TGG | + | chr4_2:10668694-10668713 | Msa0588500:CDS | 40.0% |
| TTATTGCCTCATGTTGGAAG+CGG | + | chr4_2:10668700-10668719 | Msa0588500:CDS | 40.0% | |
| CAAGTTTCCTAGAAGAAGGT+CGG | - | chr4_2:10668752-10668771 | None:intergenic | 40.0% | |
| TAAACCAAGGGAGTTAACAG+TGG | - | chr4_2:10668796-10668815 | None:intergenic | 40.0% | |
| AATTAGCGACTCTTGTGATG+TGG | + | chr4_2:10668908-10668927 | Msa0588500:three_prime_UTR | 40.0% | |
| ACTCTTGTGATGTGGATTTG+AGG | + | chr4_2:10668916-10668935 | Msa0588500:three_prime_UTR | 40.0% | |
| GAGTTGCAGAGAGTTCGATT+GGG | - | chr4_2:10665760-10665779 | None:intergenic | 45.0% | |
| TGAGTTGCAGAGAGTTCGAT+TGG | - | chr4_2:10665761-10665780 | None:intergenic | 45.0% | |
| ATCAACACCAACGCTATAGC+TGG | - | chr4_2:10666022-10666041 | None:intergenic | 45.0% | |
| ! | AAATCCTCCGAAGAAGCGTA+AGG | - | chr4_2:10666143-10666162 | None:intergenic | 45.0% |
| TACGCTTCTTCGGAGGATTT+CGG | + | chr4_2:10666143-10666162 | Msa0588500:CDS | 45.0% | |
| AGAAGTGGAAATTGGAAGCG+CGG | + | chr4_2:10666183-10666202 | Msa0588500:CDS | 45.0% | |
| AATAAGACTTAGGGCCCGTT+TGG | - | chr4_2:10666994-10667013 | None:intergenic | 45.0% | |
| ! | GTCTTATTGTGTCTCTAGGG+TGG | + | chr4_2:10667006-10667025 | Msa0588500:intron | 45.0% |
| ATTGTGGTTCGCAACATGCA+TGG | + | chr4_2:10667119-10667138 | Msa0588500:intron | 45.0% | |
| CACGGTATGAGTTCAGTCAT+GGG | + | chr4_2:10667626-10667645 | Msa0588500:intron | 45.0% | |
| ! | CGATTTGATAACCTCGGTTC+CGG | + | chr4_2:10667814-10667833 | Msa0588500:intron | 45.0% |
| ACAAAAGAGTAGGTCTTGGG+TGG | - | chr4_2:10667845-10667864 | None:intergenic | 45.0% | |
| ATCTTCCAACAATCCCCAGT+AGG | + | chr4_2:10667881-10667900 | Msa0588500:intron | 45.0% | |
| ! | GATGTTTCTACTGCCTACTG+GGG | - | chr4_2:10667897-10667916 | None:intergenic | 45.0% |
| ! | CAGATGTTTCTACTGCCTAC+TGG | - | chr4_2:10667899-10667918 | None:intergenic | 45.0% |
| ACGCTGCTCTTGCCATTAAT+AGG | + | chr4_2:10667974-10667993 | Msa0588500:intron | 45.0% | |
| !! | TTCAGGTTGGAAAATGGAGG+GGG | - | chr4_2:10668242-10668261 | None:intergenic | 45.0% |
| ! | CAGTTCTCTGGGAAAACCAT+TGG | + | chr4_2:10668295-10668314 | Msa0588500:intron | 45.0% |
| AACAACCAGTATGTCGCAGT+TGG | - | chr4_2:10668458-10668477 | None:intergenic | 45.0% | |
| CGGGAGGTCATTAATGCAAT+TGG | + | chr4_2:10668517-10668536 | Msa0588500:CDS | 45.0% | |
| GTCCTAATTAACATTGGCCG+AGG | + | chr4_2:10668550-10668569 | Msa0588500:CDS | 45.0% | |
| CTGGTCTCTGCATTACTTGA+AGG | + | chr4_2:10668595-10668614 | Msa0588500:CDS | 45.0% | |
| TTACTTGAAGGTCGTTTGGG+TGG | + | chr4_2:10668607-10668626 | Msa0588500:CDS | 45.0% | |
| ! | CGACCTTCTTCTAGGAAACT+TGG | + | chr4_2:10668750-10668769 | Msa0588500:CDS | 45.0% |
| CCTCCAAGTTTCCTAGAAGA+AGG | - | chr4_2:10668756-10668775 | None:intergenic | 45.0% | |
| ! | CCTTCTTCTAGGAAACTTGG+AGG | + | chr4_2:10668753-10668772 | Msa0588500:CDS | 45.0% |
| AACTTGGAGGCTCATTTCCT+TGG | + | chr4_2:10668766-10668785 | Msa0588500:CDS | 45.0% | |
| GAGTTAACAGTGGCTTTCCA+AGG | - | chr4_2:10668786-10668805 | None:intergenic | 45.0% | |
| AAAGCCACTGTTAACTCCCT+TGG | + | chr4_2:10668789-10668808 | Msa0588500:CDS | 45.0% | |
| CGGCATGCAGATTAAACCAA+GGG | - | chr4_2:10668808-10668827 | None:intergenic | 45.0% | |
| !!! | TGCATGCCGCTTTTGAACTA+TGG | + | chr4_2:10668819-10668838 | Msa0588500:three_prime_UTR | 45.0% |
| !! | ATAATAAGATTAAATTAATT+TGG | + | chr4_2:10667759-10667778 | Msa0588500:intron | 5.0% |
| !!! | TTTAATAATACTTTTATATT+TGG | + | chr4_2:10668001-10668020 | Msa0588500:intron | 5.0% |
| AATGAGGTTAGAATCGGCGC+CGG | - | chr4_2:10665971-10665990 | None:intergenic | 50.0% | |
| GCTTCGGCAATGCTTCAATG+AGG | - | chr4_2:10665987-10666006 | None:intergenic | 50.0% | |
| TGATCCTTACGCTTCTTCGG+AGG | + | chr4_2:10666136-10666155 | Msa0588500:CDS | 50.0% | |
| !! | TTTGCAGGGAAGCACTGAGA+GGG | - | chr4_2:10667543-10667562 | None:intergenic | 50.0% |
| !!! | TTTTGCAGGGAAGCACTGAG+AGG | - | chr4_2:10667544-10667563 | None:intergenic | 50.0% |
| GCACGGTATGAGTTCAGTCA+TGG | + | chr4_2:10667625-10667644 | Msa0588500:intron | 50.0% | |
| AGAGTAGGTCTTGGGTGGTA+AGG | - | chr4_2:10667840-10667859 | None:intergenic | 50.0% | |
| TACTGCCTACTGGGGATTGT+TGG | - | chr4_2:10667889-10667908 | None:intergenic | 50.0% | |
| !! | TCAGGTTGGAAAATGGAGGG+GGG | - | chr4_2:10668241-10668260 | None:intergenic | 50.0% |
| AGCATCCAACTGCGACATAC+TGG | + | chr4_2:10668450-10668469 | Msa0588500:CDS | 50.0% | |
| AGTTTCCTCTGTAAGAGGGC+AGG | - | chr4_2:10668482-10668501 | None:intergenic | 50.0% | |
| TCATCACATCATCAACCGGG+AGG | + | chr4_2:10668501-10668520 | Msa0588500:CDS | 50.0% | |
| ! | GCATGTTGATGAACCAGAGC+TGG | + | chr4_2:10668576-10668595 | Msa0588500:CDS | 50.0% |
| AGTAATGCAGAGACCAGCTC+TGG | - | chr4_2:10668592-10668611 | None:intergenic | 50.0% | |
| GCGGCATGCAGATTAAACCA+AGG | - | chr4_2:10668809-10668828 | None:intergenic | 50.0% | |
| GACTTAGGGCCCGTTTGGAT+TGG | - | chr4_2:10666989-10667008 | None:intergenic | 55.0% | |
| ! | GTGGTTTGCAGCTGCAGTCA+TGG | + | chr4_2:10667175-10667194 | Msa0588500:intron | 55.0% |
| TAGGTCTTGGGTGGTAAGGC+CGG | - | chr4_2:10667836-10667855 | None:intergenic | 55.0% | |
| AATGGCAAGAGCAGCGTCAC+AGG | - | chr4_2:10667971-10667990 | None:intergenic | 55.0% | |
| TTGGAAAATGGAGGGGGGAG+GGG | - | chr4_2:10668236-10668255 | None:intergenic | 55.0% | |
| GTTGGAAAATGGAGGGGGGA+GGG | - | chr4_2:10668237-10668256 | None:intergenic | 55.0% | |
| GCAGTTGCCAAGAGAGCTGA+AGG | + | chr4_2:10668346-10668365 | Msa0588500:CDS | 55.0% | |
| TGTTGCCTGCCCTCTTACAG+AGG | + | chr4_2:10668474-10668493 | Msa0588500:CDS | 55.0% | |
| GGTAGAAACTCGAGCTGCCA+TGG | + | chr4_2:10668726-10668745 | Msa0588500:CDS | 55.0% | |
| TCCTAGAAGAAGGTCGGCCA+TGG | - | chr4_2:10668746-10668765 | None:intergenic | 55.0% | |
| ACACGGCGCGTCAATTCGTG+CGG | + | chr4_2:10665927-10665946 | Msa0588500:CDS | 60.0% | |
| GCGTCAATTCGTGCGGTGGT+CGG | + | chr4_2:10665934-10665953 | Msa0588500:CDS | 60.0% | |
| GTGGTCGGAAATGCAAGCGC+CGG | + | chr4_2:10665949-10665968 | Msa0588500:CDS | 60.0% | |
| TGGAAAATGGAGGGGGGAGG+GGG | - | chr4_2:10668235-10668254 | None:intergenic | 60.0% | |
| GGTTGGAAAATGGAGGGGGG+AGG | - | chr4_2:10668238-10668257 | None:intergenic | 60.0% | |
| GAAGGTCGTTTGGGTGGTGC+TGG | + | chr4_2:10668613-10668632 | Msa0588500:CDS | 60.0% | |
| GCCTCATGTTGGAAGCGGCA+CGG | + | chr4_2:10668705-10668724 | Msa0588500:CDS | 60.0% | |
| !! | ACCGTGCCGCTTCCAACATG+AGG | - | chr4_2:10668709-10668728 | None:intergenic | 60.0% |
| GCCATGGCCGACCTTCTTCT+AGG | + | chr4_2:10668742-10668761 | Msa0588500:CDS | 60.0% | |
| GGAAAATGGAGGGGGGAGGG+GGG | - | chr4_2:10668234-10668253 | None:intergenic | 65.0% | |
| CGGCGCGTCAATTCGTGCGG+TGG | + | chr4_2:10665930-10665949 | Msa0588500:CDS | 70.0% | |
| GGGTGGTAAGGCCGGAACCG+AGG | - | chr4_2:10667828-10667847 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 10665742 | 10669085 | 10665742 | ID=Msa0588500;Name=Msa0588500 |
| chr4_2 | mRNA | 10665742 | 10669085 | 10665742 | ID=Msa0588500-mRNA-1;Parent=Msa0588500;Name=Msa0588500-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|1|0.66|1|0.5|0.33|3|245|334 |
| chr4_2 | exon | 10665742 | 10666227 | 10665742 | ID=Msa0588500-mRNA-1:exon:3035;Parent=Msa0588500-mRNA-1 |
| chr4_2 | exon | 10668298 | 10669007 | 10668298 | ID=Msa0588500-mRNA-1:exon:3036;Parent=Msa0588500-mRNA-1 |
| chr4_2 | exon | 10669032 | 10669085 | 10669032 | ID=Msa0588500-mRNA-1:exon:3037;Parent=Msa0588500-mRNA-1 |
| chr4_2 | CDS | 10665742 | 10666227 | 10665742 | ID=Msa0588500-mRNA-1:cds;Parent=Msa0588500-mRNA-1 |
| chr4_2 | CDS | 10668298 | 10668816 | 10668298 | ID=Msa0588500-mRNA-1:cds;Parent=Msa0588500-mRNA-1 |
| chr4_2 | three_prime_UTR | 10668817 | 10669007 | 10668817 | ID=Msa0588500-mRNA-1:three_prime_utr;Parent=Msa0588500-mRNA-1 |
| chr4_2 | three_prime_UTR | 10669032 | 10669085 | 10669032 | ID=Msa0588500-mRNA-1:three_prime_utr;Parent=Msa0588500-mRNA-1 |
| Gene Sequence |
| Protein sequence |
