AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0389700

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0389700 MtrunA17_Chr3g0112401 99.169 361 3 0 1 361 1 361 0.0 728
Msa0389700 MtrunA17_Chr5g0435771 93.075 361 25 0 1 361 1 361 0.0 686
Msa0389700 MtrunA17_Chr4g0076111 74.618 327 38 2 35 361 9 290 4.29e-171 478
Msa0389700 MtrunA17_Chr3g0118161 32.250 400 223 7 3 354 10 409 5.41e-64 209
Msa0389700 MtrunA17_Chr6g0451921 32.432 407 226 8 3 361 9 414 6.12e-63 206
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0389700 AT2G39770.2 90.859 361 33 0 1 361 1 361 0.0 679
Msa0389700 AT2G39770.3 90.859 361 33 0 1 361 1 361 0.0 679
Msa0389700 AT2G39770.1 90.859 361 33 0 1 361 1 361 0.0 679
Msa0389700 AT3G55590.1 83.516 364 57 1 1 361 1 364 0.0 627
Msa0389700 AT4G30570.1 76.596 329 76 1 21 348 1 329 0.0 517
Msa0389700 AT2G04650.1 32.570 393 224 7 3 354 8 400 1.27e-65 213
Msa0389700 AT2G04650.2 32.208 385 222 6 9 354 4 388 4.01e-65 212
Msa0389700 AT1G74910.2 31.034 406 232 8 3 361 11 415 4.81e-65 212
Msa0389700 AT1G74910.1 31.034 406 232 8 3 361 11 415 4.81e-65 212
Msa0389700 AT1G74910.3 30.411 365 216 6 3 329 11 375 3.34e-58 194

Find 142 sgRNAs with CRISPR-Local

Find 348 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGAATATGCCTTGTTTAT+TGG 0.092539 3_1:+94692996 None:intergenic
ATTCAATTGGAAGTTATTTA+TGG 0.139429 3_1:-94692900 Msa0389700:five_prime_UTR
ATTATTTGAGGTCACAAAAT+TGG 0.150473 3_1:-94688474 Msa0389700:three_prime_UTR
CCTTTCAACTTTATAAATTA+TGG 0.169583 3_1:+94688571 None:intergenic
GGCCAGTGGCCCTCACATTT+TGG 0.174139 3_1:-94689088 Msa0389700:CDS
TGTTCTCTTCCAGCCTTTCT+TGG 0.191543 3_1:-94691000 Msa0389700:intron
CTTCTTGACTCGTTCGAGTT+AGG 0.194509 3_1:-94692756 Msa0389700:five_prime_UTR
GAGACATCCCTCGCCAATTT+TGG 0.195747 3_1:+94689041 None:intergenic
CAATGGTTCTGCCTGGATTC+TGG 0.230745 3_1:-94689194 Msa0389700:CDS
TTGATTCTGGTTGGAGGGTT+TGG 0.231295 3_1:-94690919 Msa0389700:CDS
CACACTACATGCTAAGAATT+TGG 0.235614 3_1:+94688724 None:intergenic
CACAATGAAGGCATTGATTC+TGG 0.244864 3_1:-94690932 Msa0389700:exon
CGCCAAACCCTCAATTCTTC+AGG 0.259392 3_1:-94692720 Msa0389700:intron
CCTATTGAACCCCTCAGTTT+TGG 0.269147 3_1:-94689292 Msa0389700:CDS
TGTTACTTGAAGACTTAAAA+AGG 0.276415 3_1:-94692974 Msa0389700:five_prime_UTR
AATTACCTTTGTCACCATTA+TGG 0.298623 3_1:+94689505 None:intergenic
ACTCGATCGGTGCCACTAAA+AGG 0.303711 3_1:+94688430 None:intergenic
TTCTTGACTCGTTCGAGTTA+GGG 0.345159 3_1:-94692755 Msa0389700:five_prime_UTR
CACTGAAAATTACACAGCTT+TGG 0.355062 3_1:+94688516 None:intergenic
AAATATGTATTCATTTCATT+TGG 0.358212 3_1:-94688668 Msa0389700:three_prime_UTR
GTGCATGAGACAGCCAAAAT+TGG 0.360392 3_1:-94689054 Msa0389700:CDS
TTATTTGAGGTCACAAAATT+GGG 0.367629 3_1:-94688473 Msa0389700:three_prime_UTR
GTTGACGAGCCATCGAAATA+TGG 0.375253 3_1:-94689408 Msa0389700:CDS
TTTGCAGATAGAGGCTCTTA+AGG 0.376635 3_1:-94689902 Msa0389700:intron
TATAGTTATTCTAATTCAAT+TGG 0.378406 3_1:-94692913 Msa0389700:five_prime_UTR
GGCATTCAACTGTTGGTCAA+TGG 0.378871 3_1:-94688891 Msa0389700:CDS
GCATTCAACTGTTGGTCAAT+GGG 0.390410 3_1:-94688890 Msa0389700:CDS
CTTCTCCTCCATGAGATTTG+TGG 0.394590 3_1:+94689531 None:intergenic
GAAATATGGTGTAGTTGTTA+TGG 0.396468 3_1:-94689394 Msa0389700:CDS
CAAAATTGGGATTCTTTGAC+AGG 0.413907 3_1:-94688460 Msa0389700:three_prime_UTR
CCAAAACTGAGGGGTTCAAT+AGG 0.416025 3_1:+94689292 None:intergenic
CTCTCAAGAAACTGAACCAT+TGG 0.424571 3_1:-94689672 Msa0389700:CDS
AGCAAAATCAACAAGAGGCT+TGG 0.428162 3_1:+94690864 None:intergenic
AAAGAAACCTGAAGAATTGA+GGG 0.431335 3_1:+94692713 None:intergenic
AACCTGAAGAATTGAGGGTT+TGG 0.432730 3_1:+94692718 None:intergenic
ATTGGACCTGATGTTGCAAT+TGG 0.435688 3_1:-94689018 Msa0389700:CDS
CAAGCCCATGATTCTGCATC+AGG 0.436008 3_1:-94690839 Msa0389700:intron
ATTGGGGACTGCAGGTCCCT+TGG 0.442280 3_1:-94689654 Msa0389700:CDS
CCCCAAAATGTGAGGGCCAC+TGG 0.444498 3_1:+94689086 None:intergenic
GAATTTCTTGAAGGACTTTG+AGG 0.444711 3_1:-94689720 Msa0389700:CDS
CCTGATGTTGCAATTGGTCC+TGG 0.445714 3_1:-94689012 Msa0389700:CDS
CAGCCAAGGGACTATATAAC+AGG 0.445775 3_1:-94689159 Msa0389700:CDS
GCCAGAGATAAGCTGATTGA+TGG 0.448757 3_1:-94689626 Msa0389700:CDS
AAAAGAAACCTGAAGAATTG+AGG 0.451583 3_1:+94692712 None:intergenic
GTGAGGGCCACTGGCCAACT+TGG 0.453022 3_1:+94689095 None:intergenic
TAGCCTCACATGACTATCTC+TGG 0.457298 3_1:+94688754 None:intergenic
GTTGGCAACAAAATCAATGC+TGG 0.457593 3_1:-94689321 Msa0389700:CDS
GCAAAATCAACAAGAGGCTT+GGG 0.462216 3_1:+94690865 None:intergenic
GTACTATTGAGTCAGGTGTC+AGG 0.462789 3_1:-94688987 Msa0389700:CDS
CCTTACCTGATGCAGAATCA+TGG 0.467053 3_1:+94690834 None:intergenic
TCTCAAGAAACTGAACCATT+GGG 0.467960 3_1:-94689671 Msa0389700:CDS
TTTGTTGCCAACAAACAACT+TGG 0.477074 3_1:+94689332 None:intergenic
ATTGGCGAGGGATGTCTCAT+TGG 0.477910 3_1:-94689036 Msa0389700:CDS
AATTCTATCATTTCTTTGAG+TGG 0.484489 3_1:+94689554 None:intergenic
GGTGATGTTGAATTTCTTGA+AGG 0.486495 3_1:-94689729 Msa0389700:CDS
GCCATCAATCAGCTTATCTC+TGG 0.487352 3_1:+94689625 None:intergenic
GAGAAACCCAAGTTGTTTGT+TGG 0.488405 3_1:-94689339 Msa0389700:CDS
TGCATATCCAGCAGCATCAT+CGG 0.488487 3_1:-94688916 Msa0389700:CDS
CCTGGCTGTACTATTGAGTC+AGG 0.491456 3_1:-94688994 Msa0389700:CDS
TTGGGAACGCTGAGTGTCAA+TGG 0.493354 3_1:+94690883 None:intergenic
ACGATAGTATTGGTCAATGT+TGG 0.496606 3_1:+94692851 None:intergenic
ACCCACTTCTATTGAGAAAG+AGG 0.506248 3_1:-94689253 Msa0389700:CDS
TGGAGGAGAAGCTTCCATAA+TGG 0.508219 3_1:-94689519 Msa0389700:CDS
AATTGGAAGTTATTTATGGA+TGG 0.510192 3_1:-94692896 Msa0389700:five_prime_UTR
GCATATCCAGCAGCATCATC+GGG 0.514239 3_1:-94688915 Msa0389700:CDS
TGGTTGGAGGGTTTGGAACA+AGG 0.517924 3_1:-94690912 Msa0389700:CDS
GAGGGTTTGGAACAAGGTTG+AGG 0.519056 3_1:-94690906 Msa0389700:CDS
ATGAAGGCATTGATTCTGGT+TGG 0.520723 3_1:-94690928 Msa0389700:CDS
GAAGAAGACTTCTTCCAAGT+TGG 0.520882 3_1:-94689109 Msa0389700:CDS
ATCGGGTGGCATTCAACTGT+TGG 0.522221 3_1:-94688898 Msa0389700:CDS
CCTGGATTCTGGATGGACAT+TGG 0.522294 3_1:-94689183 Msa0389700:CDS
ATAGAATTCCACAAATCTCA+TGG 0.522477 3_1:-94689539 Msa0389700:CDS
CTATATGCAATGGTTCTGCC+TGG 0.525369 3_1:-94689201 Msa0389700:CDS
AACAGGTCTGAGACTCTACC+TGG 0.527965 3_1:-94689142 Msa0389700:CDS
CCAATGTCCATCCAGAATCC+AGG 0.528298 3_1:+94689183 None:intergenic
CCAGGACCAATTGCAACATC+AGG 0.528530 3_1:+94689012 None:intergenic
AACAAATTTCTCAACCTGCC+CGG 0.528886 3_1:+94689362 None:intergenic
ACTGAACCATTGGGGACTGC+AGG 0.534135 3_1:-94689662 Msa0389700:CDS
TCTTAGCATGTAGTGTGTCT+AGG 0.536433 3_1:-94688718 Msa0389700:three_prime_UTR
AGACCTGTTATATAGTCCCT+TGG 0.537146 3_1:+94689156 None:intergenic
CTTATCTCTGGCAAGAGCCA+AGG 0.538273 3_1:+94689637 None:intergenic
ATGCCACCCGATGATGCTGC+TGG 0.538528 3_1:+94688909 None:intergenic
TGGAGTTACTGAAGTGGTGC+TGG 0.539605 3_1:-94689875 Msa0389700:CDS
CAAAGGTCACATCACAATGA+AGG 0.540103 3_1:-94690944 Msa0389700:exon
GCACTGTAATGAGAGGAGTT+CGG 0.540270 3_1:-94688954 Msa0389700:CDS
CACCTCTTTCTCAATAGAAG+TGG 0.543517 3_1:+94689251 None:intergenic
TGTTGGTCAATGGGCTCGCG+TGG 0.545394 3_1:-94688881 Msa0389700:CDS
AGGCATTGATTCTGGTTGGA+GGG 0.546975 3_1:-94690924 Msa0389700:CDS
AAGGCATTGATTCTGGTTGG+AGG 0.548820 3_1:-94690925 Msa0389700:CDS
CTTGTTTATTGGACTATCGT+CGG 0.549459 3_1:+94693007 None:intergenic
TTTACAATGTGCGGGGAAGG+AGG 0.549974 3_1:+94688621 None:intergenic
TTGGCAACAAAATCAATGCT+GGG 0.556088 3_1:-94689320 Msa0389700:CDS
CCATAATTTATAAAGTTGAA+AGG 0.559634 3_1:-94688571 Msa0389700:three_prime_UTR
GTGGAGAATATGACTATCCT+TGG 0.561456 3_1:-94688862 Msa0389700:CDS
ATAGAGGCTCTTAAGGACAT+TGG 0.566425 3_1:-94689895 Msa0389700:CDS
TCTTCTTCCTGAGTGAGTCC+AGG 0.570610 3_1:+94689124 None:intergenic
TTATCTCTGGCAAGAGCCAA+GGG 0.571035 3_1:+94689638 None:intergenic
TCAATATGATCCAAAACTGA+GGG 0.571408 3_1:+94689282 None:intergenic
GACTCTACCTGGACTCACTC+AGG 0.571470 3_1:-94689131 Msa0389700:CDS
CTTACCTGATGCAGAATCAT+GGG 0.572676 3_1:+94690835 None:intergenic
CTACATGCTAAGAATTTGGA+AGG 0.578323 3_1:+94688728 None:intergenic
ACCTCTTTCTCAATAGAAGT+GGG 0.579545 3_1:+94689252 None:intergenic
ATGAGGTGTTACGATAGTAT+TGG 0.580339 3_1:+94692841 None:intergenic
TATGGAAGAGACTACCGGGC+AGG 0.580495 3_1:-94689376 Msa0389700:CDS
TTACAATGTGCGGGGAAGGA+GGG 0.581779 3_1:+94688622 None:intergenic
TTGTTGCCAACAAACAACTT+GGG 0.582555 3_1:+94689333 None:intergenic
GGTTCTGCCTGGATTCTGGA+TGG 0.583086 3_1:-94689190 Msa0389700:CDS
ATCACATTCCCCAAAATGTG+AGG 0.586656 3_1:+94689078 None:intergenic
TCAGTGTCTATGTAAAGAGT+TGG 0.587085 3_1:-94688548 Msa0389700:three_prime_UTR
AGCTTCCATAATGGTGACAA+AGG 0.594491 3_1:-94689510 Msa0389700:intron
GGATGGACATTGGACAGCCA+AGG 0.596026 3_1:-94689173 Msa0389700:CDS
CGACGATAGTCCAATAAACA+AGG 0.605330 3_1:-94693006 Msa0389700:five_prime_UTR
TTCAATATGATCCAAAACTG+AGG 0.607441 3_1:+94689281 None:intergenic
GATGGACATTGGACAGCCAA+GGG 0.607762 3_1:-94689172 Msa0389700:CDS
TCAAGTTGCACTGTAATGAG+AGG 0.608923 3_1:-94688961 Msa0389700:CDS
AAGGGACCTGCAGTCCCCAA+TGG 0.610136 3_1:+94689656 None:intergenic
ACTTCTTCCAAGTTGGCCAG+TGG 0.612092 3_1:-94689102 Msa0389700:CDS
GTTGTTATGGAAGAGACTAC+CGG 0.612863 3_1:-94689381 Msa0389700:CDS
TAGCATGTAGTGTGTCTAGG+AGG 0.613908 3_1:-94688715 Msa0389700:three_prime_UTR
ACAACTACACCATATTTCGA+TGG 0.616973 3_1:+94689399 None:intergenic
TTGTTAGCAAAATCAACAAG+AGG 0.621493 3_1:+94690859 None:intergenic
TGAGACAGCCAAAATTGGCG+AGG 0.624566 3_1:-94689049 Msa0389700:CDS
GCACAATCCATACCTCTGGT+TGG 0.626350 3_1:+94689842 None:intergenic
GTTTATTGGACTATCGTCGG+TGG 0.627252 3_1:+94693010 None:intergenic
CCTGACTCAATAGTACAGCC+AGG 0.628206 3_1:+94688994 None:intergenic
ATACATGGACATCTTCTCCA+AGG 0.629569 3_1:+94688845 None:intergenic
CTCAAGAAACTGAACCATTG+GGG 0.633701 3_1:-94689670 Msa0389700:CDS
TGTAAACTTCATCAGATACA+TGG 0.633717 3_1:+94688830 None:intergenic
TTGTTATGGAAGAGACTACC+GGG 0.634181 3_1:-94689380 Msa0389700:CDS
TCTGATGAAGTTTACAGCAA+TGG 0.634276 3_1:-94688823 Msa0389700:CDS
GAGACAGCCAAAATTGGCGA+GGG 0.639601 3_1:-94689048 Msa0389700:CDS
GGACATTGGAGTTACTGAAG+TGG 0.642199 3_1:-94689881 Msa0389700:CDS
TCACATTCCCCAAAATGTGA+GGG 0.643108 3_1:+94689079 None:intergenic
CAAGAAGACGAGTTAGAGTG+AGG 0.652032 3_1:+94692772 None:intergenic
AGTTTACAGCAATGGTGGTG+TGG 0.665559 3_1:-94688815 Msa0389700:CDS
GGCTATCAATTACCAACCAG+AGG 0.681698 3_1:-94689854 Msa0389700:intron
GATGAAGTTTACAGCAATGG+TGG 0.691163 3_1:-94688820 Msa0389700:CDS
TATCCAGCAGCATCATCGGG+TGG 0.692094 3_1:-94688912 Msa0389700:CDS
TGGAATGGTGAAACTGAATG+AGG 0.696240 3_1:+94692824 None:intergenic
AATCCAGAGATAGTCATGTG+AGG 0.703190 3_1:-94688757 Msa0389700:exon
CAATATGATCCAAAACTGAG+GGG 0.719526 3_1:+94689283 None:intergenic
GAATTCCACAAATCTCATGG+AGG 0.748000 3_1:-94689536 Msa0389700:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGAGAATTAATAATAATAAA+GGG + chr3_1:94688823-94688842 None:intergenic 10.0%
!! TTGAGAATTAATAATAATAA+AGG + chr3_1:94688824-94688843 None:intergenic 10.0%
!! TATAGTTATTCTAATTCAAT+TGG - chr3_1:94688556-94688575 Msa0389700:three_prime_UTR 15.0%
!! AAAAAAAAAAAAAACTGGAA+TGG + chr3_1:94688663-94688682 None:intergenic 15.0%
!! CAAGAAAAAAAAAAAAAAAC+TGG + chr3_1:94688668-94688687 None:intergenic 15.0%
!!! TATATAAAGTTGGTTTTTTT+AGG - chr3_1:94689068-94689087 Msa0389700:CDS 15.0%
!!! TAGATAAAAGTTAAGTTTTT+AGG - chr3_1:94690246-94690265 Msa0389700:intron 15.0%
!!! AGATAAAAGTTAAGTTTTTA+GGG - chr3_1:94690247-94690266 Msa0389700:intron 15.0%
!! AAATATGTATTCATTTCATT+TGG - chr3_1:94692801-94692820 Msa0389700:five_prime_UTR 15.0%
!! ATTCAATTGGAAGTTATTTA+TGG - chr3_1:94688569-94688588 Msa0389700:three_prime_UTR 20.0%
!! TGGTGGAAATTATTTAAAAA+AGG - chr3_1:94689008-94689027 Msa0389700:CDS 20.0%
!! AATGTTGAGATATATAAAGT+TGG - chr3_1:94689058-94689077 Msa0389700:CDS 20.0%
!! ATATTTGAAAAACTAATCTC+CGG + chr3_1:94689279-94689298 None:intergenic 20.0%
!!! GATTAGTTTTTCAAATATGT+CGG - chr3_1:94689281-94689300 Msa0389700:CDS 20.0%
!!! GGCTTTTTTATAAAATTTTC+AGG + chr3_1:94689454-94689473 None:intergenic 20.0%
!! ATTATTGGTATATTCAAACA+AGG + chr3_1:94689934-94689953 None:intergenic 20.0%
!! TTGTTTGAATATACCAATAA+TGG - chr3_1:94689933-94689952 Msa0389700:intron 20.0%
!!! TTGGATAATGTTAAGTTTTT+AGG - chr3_1:94690135-94690154 Msa0389700:intron 20.0%
!!! TGGATAATGTTAAGTTTTTA+GGG - chr3_1:94690136-94690155 Msa0389700:intron 20.0%
!! ATTTGCATAAATAAAACTAC+TGG + chr3_1:94690362-94690381 None:intergenic 20.0%
!!! TTCAAAACATTTAATTTTCC+TGG - chr3_1:94690497-94690516 Msa0389700:intron 20.0%
!! TATACTTTGACATACTAAAA+TGG + chr3_1:94690966-94690985 None:intergenic 20.0%
!!! AAATCAACTTGTTGAAATTT+GGG + chr3_1:94691218-94691237 None:intergenic 20.0%
!!! TAAATCAACTTGTTGAAATT+TGG + chr3_1:94691219-94691238 None:intergenic 20.0%
!! TATCTGCAAAACAAATTAAA+AGG + chr3_1:94691557-94691576 None:intergenic 20.0%
!! CCTTTCAACTTTATAAATTA+TGG + chr3_1:94692901-94692920 None:intergenic 20.0%
!! CCATAATTTATAAAGTTGAA+AGG - chr3_1:94692898-94692917 Msa0389700:five_prime_UTR 20.0%
!!! CAGAATTTTCTTATTATTTG+AGG - chr3_1:94692983-94693002 Msa0389700:five_prime_UTR 20.0%
!!! ATTGAATATGCCTTGTTTAT+TGG + chr3_1:94688476-94688495 None:intergenic 25.0%
!! TGTTACTTGAAGACTTAAAA+AGG - chr3_1:94688495-94688514 Msa0389700:three_prime_UTR 25.0%
! AATTGGAAGTTATTTATGGA+TGG - chr3_1:94688573-94688592 Msa0389700:three_prime_UTR 25.0%
!!! GTTTCTTTGTGTTTTTTCAT+TGG - chr3_1:94688928-94688947 Msa0389700:CDS 25.0%
!!! TGCTTTTAATTCAAGCTTTT+TGG - chr3_1:94688988-94689007 Msa0389700:CDS 25.0%
!!! TTTTAATTCAAGCTTTTTGG+TGG - chr3_1:94688991-94689010 Msa0389700:CDS 25.0%
!!! TTAGGGTTTTTAAGATCAAA+TGG - chr3_1:94689212-94689231 Msa0389700:CDS 25.0%
!!! TAGGGTTTTTAAGATCAAAT+GGG - chr3_1:94689213-94689232 Msa0389700:CDS 25.0%
! TATTTGAAAAACTAATCTCC+GGG + chr3_1:94689278-94689297 None:intergenic 25.0%
! TCAATTAAGCTTAAGATACA+AGG + chr3_1:94690162-94690181 None:intergenic 25.0%
! AATTCAAGAAACTCAAGAAA+CGG + chr3_1:94690672-94690691 None:intergenic 25.0%
! GGAGAGAAAATATAACATAT+AGG + chr3_1:94690749-94690768 None:intergenic 25.0%
!! ACAATTTTTCATATCCAACA+AGG - chr3_1:94690885-94690904 Msa0389700:CDS 25.0%
!!! AATCAACTTGTTGAAATTTG+GGG + chr3_1:94691217-94691236 None:intergenic 25.0%
!!! TGTTTTAGGTTAATATAGTG+TGG - chr3_1:94691275-94691294 Msa0389700:intron 25.0%
!!! GTTTTAGGTTAATATAGTGT+GGG - chr3_1:94691276-94691295 Msa0389700:intron 25.0%
! ATTAAAAGGAAAAACACATG+AGG + chr3_1:94691543-94691562 None:intergenic 25.0%
!!! TTAATTTGTTTTGCAGATAG+AGG - chr3_1:94691558-94691577 Msa0389700:intron 25.0%
! AATTCTATCATTTCTTTGAG+TGG + chr3_1:94691918-94691937 None:intergenic 25.0%
! AAACAAAAAGCTATATGCAA+TGG - chr3_1:94692258-94692277 Msa0389700:intron 25.0%
!! ATTATTTGAGGTCACAAAAT+TGG - chr3_1:94692995-94693014 Msa0389700:five_prime_UTR 25.0%
!! TTATTTGAGGTCACAAAATT+GGG - chr3_1:94692996-94693015 Msa0389700:five_prime_UTR 25.0%
AAAGAAACCTGAAGAATTGA+GGG + chr3_1:94688759-94688778 None:intergenic 30.0%
AAAAGAAACCTGAAGAATTG+AGG + chr3_1:94688760-94688779 None:intergenic 30.0%
CTAATCACAAGCATACAATT+TGG + chr3_1:94688890-94688909 None:intergenic 30.0%
!!! GTTGGTTTTTTTAGGACAAA+TGG - chr3_1:94689076-94689095 Msa0389700:CDS 30.0%
!!! TTTTTAGGACAAATGGATCT+AGG - chr3_1:94689083-94689102 Msa0389700:CDS 30.0%
AGTTAGTGGAATGTAACATA+AGG - chr3_1:94689166-94689185 Msa0389700:CDS 30.0%
!!! TAATAGTGTCGGTAAGTTTT+TGG + chr3_1:94689195-94689214 None:intergenic 30.0%
AAAAACTTACCGACACTATT+AGG - chr3_1:94689194-94689213 Msa0389700:CDS 30.0%
AAAACTTACCGACACTATTA+GGG - chr3_1:94689195-94689214 Msa0389700:CDS 30.0%
CTTAAAAACCCTAATAGTGT+CGG + chr3_1:94689206-94689225 None:intergenic 30.0%
!!! AGGGTTTTTAAGATCAAATG+GGG - chr3_1:94689214-94689233 Msa0389700:CDS 30.0%
!! TAGTTTTTCAAATATGTCGG+TGG - chr3_1:94689284-94689303 Msa0389700:CDS 30.0%
CAATTGAAACAAAGTTGCTT+CGG - chr3_1:94689366-94689385 Msa0389700:CDS 30.0%
!!! ATAAAAAAGCCGTTTTTCCA+TGG - chr3_1:94689463-94689482 Msa0389700:intron 30.0%
!! TATCGCAAAACTTGTTGATA+TGG - chr3_1:94689572-94689591 Msa0389700:CDS 30.0%
GTTGATATGGTTAATCAATG+TGG - chr3_1:94689585-94689604 Msa0389700:CDS 30.0%
AAAAATTCACAACTCCAAAC+AGG + chr3_1:94689621-94689640 None:intergenic 30.0%
! CTTTACTTTGAAAGCCATAT+AGG - chr3_1:94689708-94689727 Msa0389700:CDS 30.0%
! ACAGAAAGCTAGTTTATCTA+GGG + chr3_1:94689845-94689864 None:intergenic 30.0%
GTATATTCAAACAAGGATCA+TGG + chr3_1:94689927-94689946 None:intergenic 30.0%
AAACTATTTAATCGTGCAGA+AGG + chr3_1:94689964-94689983 None:intergenic 30.0%
ATTACAAGAATCATAGACGT+AGG + chr3_1:94690083-94690102 None:intergenic 30.0%
!!! GTCTTTTTTCTTACTGCTTT+TGG - chr3_1:94690116-94690135 Msa0389700:intron 30.0%
TCAACTAAGCTTAAGATACA+AGG + chr3_1:94690273-94690292 None:intergenic 30.0%
TTCTATGCTGTCCTATAAAT+AGG + chr3_1:94690426-94690445 None:intergenic 30.0%
! TAATTTTCCTGGAAAAGCAA+AGG - chr3_1:94690508-94690527 Msa0389700:intron 30.0%
TTGTTAGCAAAATCAACAAG+AGG + chr3_1:94690613-94690632 None:intergenic 30.0%
ATTCAAGAAACTCAAGAAAC+GGG + chr3_1:94690671-94690690 None:intergenic 30.0%
TGGATATGAAAAATTGTTGC+AGG + chr3_1:94690882-94690901 None:intergenic 30.0%
! ATTTTCTGAATGAGTTGTGT+TGG - chr3_1:94690987-94691006 Msa0389700:five_prime_UTR 30.0%
CTTGAGAAGAGTTTATAAAG+AGG - chr3_1:94691146-94691165 Msa0389700:intron 30.0%
AACCTAAAACACGTTAATGA+TGG + chr3_1:94691266-94691285 None:intergenic 30.0%
!! ACAATTTTTCGCACTTTTTG+AGG + chr3_1:94691339-94691358 None:intergenic 30.0%
ATAGAATTCCACAAATCTCA+TGG - chr3_1:94691930-94691949 Msa0389700:intron 30.0%
AATTACCTTTGTCACCATTA+TGG + chr3_1:94691967-94691986 None:intergenic 30.0%
ATGGTGACAAAGGTAATTAA+CGG - chr3_1:94691969-94691988 Msa0389700:intron 30.0%
GAAATATGGTGTAGTTGTTA+TGG - chr3_1:94692075-94692094 Msa0389700:intron 30.0%
TCAATATGATCCAAAACTGA+GGG + chr3_1:94692190-94692209 None:intergenic 30.0%
TTCAATATGATCCAAAACTG+AGG + chr3_1:94692191-94692210 None:intergenic 30.0%
!! TTTTTGTTTGCTGCAATCTT+TGG + chr3_1:94692247-94692266 None:intergenic 30.0%
TGTAAACTTCATCAGATACA+TGG + chr3_1:94692642-94692661 None:intergenic 30.0%
!! AAACTGACTTTTACAATGTG+CGG + chr3_1:94692860-94692879 None:intergenic 30.0%
CTTGTTTATTGGACTATCGT+CGG + chr3_1:94688465-94688484 None:intergenic 35.0%
!! ACGATAGTATTGGTCAATGT+TGG + chr3_1:94688621-94688640 None:intergenic 35.0%
! ATGAGGTGTTACGATAGTAT+TGG + chr3_1:94688631-94688650 None:intergenic 35.0%
!! TTACTTTTGTCATGCTCACA+AGG - chr3_1:94688844-94688863 Msa0389700:CDS 35.0%
!!! GGGTTTTTAAGATCAAATGG+GGG - chr3_1:94689215-94689234 Msa0389700:CDS 35.0%
CTAACATTGCCATGGAAAAA+CGG + chr3_1:94689475-94689494 None:intergenic 35.0%
ACGTGAATATGTGACCTAAT+CGG - chr3_1:94689533-94689552 Msa0389700:CDS 35.0%
ATGGTTAATCAATGTGGCAA+AGG - chr3_1:94689591-94689610 Msa0389700:CDS 35.0%
TGGTTAATCAATGTGGCAAA+GGG - chr3_1:94689592-94689611 Msa0389700:CDS 35.0%
TAACTAGGTTTGGCTACTAA+GGG + chr3_1:94689655-94689674 None:intergenic 35.0%
AAGCCATATAGGAAATCTTC+TGG - chr3_1:94689719-94689738 Msa0389700:CDS 35.0%
ATGCCAGAAGATTTCCTATA+TGG + chr3_1:94689725-94689744 None:intergenic 35.0%
! AATCTTCTGGCATTGAAAGA+AGG - chr3_1:94689732-94689751 Msa0389700:intron 35.0%
! CACAGAAAGCTAGTTTATCT+AGG + chr3_1:94689846-94689865 None:intergenic 35.0%
TGGTCATTACAGCTTAACTT+TGG + chr3_1:94689900-94689919 None:intergenic 35.0%
AGCTAGTATCATTTCATAGC+TGG - chr3_1:94690001-94690020 Msa0389700:intron 35.0%
GGAAGTAAAAGCGAATCAAA+AGG + chr3_1:94690057-94690076 None:intergenic 35.0%
AAGAATCATAGACGTAGGAA+CGG + chr3_1:94690078-94690097 None:intergenic 35.0%
! ACAGGAACAAATAACTTGCA+AGG + chr3_1:94690399-94690418 None:intergenic 35.0%
TTCCTGTCATGCCTATTTAT+AGG - chr3_1:94690412-94690431 Msa0389700:intron 35.0%
TTCAAGAAACTCAAGAAACG+GGG + chr3_1:94690670-94690689 None:intergenic 35.0%
TGCAAGATATTTCAGCAGAA+TGG - chr3_1:94690824-94690843 Msa0389700:intron 35.0%
GCAAGATATTTCAGCAGAAT+GGG - chr3_1:94690825-94690844 Msa0389700:intron 35.0%
GAGAAGAGTTTATAAAGAGG+AGG - chr3_1:94691149-94691168 Msa0389700:intron 35.0%
CTAACTCATCCTTACAAAAC+CGG + chr3_1:94691193-94691212 None:intergenic 35.0%
CTAAAACACGTTAATGATGG+AGG + chr3_1:94691263-94691282 None:intergenic 35.0%
! CTCCATCATTAACGTGTTTT+AGG - chr3_1:94691261-94691280 Msa0389700:intron 35.0%
!! TTTCGCACTTTTTGAGGAAA+GGG + chr3_1:94691333-94691352 None:intergenic 35.0%
!! TTTTCGCACTTTTTGAGGAA+AGG + chr3_1:94691334-94691353 None:intergenic 35.0%
TTCATTGAGAATGACTGACA+CGG + chr3_1:94691667-94691686 None:intergenic 35.0%
AATTCAACATCACCTACAAG+AGG + chr3_1:94691734-94691753 None:intergenic 35.0%
GGTGATGTTGAATTTCTTGA+AGG - chr3_1:94691740-94691759 Msa0389700:intron 35.0%
GAATTTCTTGAAGGACTTTG+AGG - chr3_1:94691749-94691768 Msa0389700:intron 35.0%
TCTCAAGAAACTGAACCATT+GGG - chr3_1:94691798-94691817 Msa0389700:intron 35.0%
TCGCTGTTGAGAACAAAAAA+TGG + chr3_1:94691879-94691898 None:intergenic 35.0%
ACAACTACACCATATTTCGA+TGG + chr3_1:94692073-94692092 None:intergenic 35.0%
TTGTTGCCAACAAACAACTT+GGG + chr3_1:94692139-94692158 None:intergenic 35.0%
TTTGTTGCCAACAAACAACT+TGG + chr3_1:94692140-94692159 None:intergenic 35.0%
TTGGCAACAAAATCAATGCT+GGG - chr3_1:94692149-94692168 Msa0389700:intron 35.0%
CAATATGATCCAAAACTGAG+GGG + chr3_1:94692189-94692208 None:intergenic 35.0%
ACCTCTTTCTCAATAGAAGT+GGG + chr3_1:94692220-94692239 None:intergenic 35.0%
TCTGATGAAGTTTACAGCAA+TGG - chr3_1:94692646-94692665 Msa0389700:intron 35.0%
!!! CTTGTTTTGATTTCCTTGTG+GGG + chr3_1:94692685-94692704 None:intergenic 35.0%
!!! GCTTGTTTTGATTTCCTTGT+GGG + chr3_1:94692686-94692705 None:intergenic 35.0%
!!! TGCTTGTTTTGATTTCCTTG+TGG + chr3_1:94692687-94692706 None:intergenic 35.0%
CTACATGCTAAGAATTTGGA+AGG + chr3_1:94692744-94692763 None:intergenic 35.0%
CACACTACATGCTAAGAATT+TGG + chr3_1:94692748-94692767 None:intergenic 35.0%
!! AACTGACTTTTACAATGTGC+GGG + chr3_1:94692859-94692878 None:intergenic 35.0%
TCAGTGTCTATGTAAAGAGT+TGG - chr3_1:94692921-94692940 Msa0389700:five_prime_UTR 35.0%
CACTGAAAATTACACAGCTT+TGG + chr3_1:94692956-94692975 None:intergenic 35.0%
CAAAATTGGGATTCTTTGAC+AGG - chr3_1:94693009-94693028 Msa0389700:five_prime_UTR 35.0%
CGACGATAGTCCAATAAACA+AGG - chr3_1:94688463-94688482 Msa0389700:three_prime_UTR 40.0%
TGGAATGGTGAAACTGAATG+AGG + chr3_1:94688648-94688667 None:intergenic 40.0%
! TTCTTGACTCGTTCGAGTTA+GGG - chr3_1:94688714-94688733 Msa0389700:three_prime_UTR 40.0%
AACCTGAAGAATTGAGGGTT+TGG + chr3_1:94688754-94688773 None:intergenic 40.0%
TAGGGTATAGCTGAAGCTAA+AGG + chr3_1:94689119-94689138 None:intergenic 40.0%
TAGCTTCAGCTATACCCTAA+TGG - chr3_1:94689120-94689139 Msa0389700:CDS 40.0%
AGCTTCAGCTATACCCTAAT+GGG - chr3_1:94689121-94689140 Msa0389700:CDS 40.0%
AACTAATCTCCGGGTTTGAA+TGG + chr3_1:94689269-94689288 None:intergenic 40.0%
AACTAATCTCCGGGTTTGAA+TGG + chr3_1:94689269-94689288 None:intergenic 40.0%
!!! ACCCGGAGATTAGTTTTTCT+CGG - chr3_1:94689322-94689341 Msa0389700:CDS 40.0%
ACCGAGAAAAACTAATCTCC+GGG + chr3_1:94689326-94689345 None:intergenic 40.0%
CACCGAGAAAAACTAATCTC+CGG + chr3_1:94689327-94689346 None:intergenic 40.0%
ATTCACGTGTACCATAACAG+AGG + chr3_1:94689521-94689540 None:intergenic 40.0%
ACACAAGATTGAGTCCGATT+AGG + chr3_1:94689550-94689569 None:intergenic 40.0%
TTAATCAATGTGGCAAAGGG+TGG - chr3_1:94689595-94689614 Msa0389700:CDS 40.0%
GTAACTAGGTTTGGCTACTA+AGG + chr3_1:94689656-94689675 None:intergenic 40.0%
AGTAGCCAAACCTAGTTACT+TGG - chr3_1:94689657-94689676 Msa0389700:CDS 40.0%
! CATTAGAGTGCCAAGTAACT+AGG + chr3_1:94689670-94689689 None:intergenic 40.0%
!!! GGGTTGGATTAGCTTAGTTT+TGG - chr3_1:94689796-94689815 Msa0389700:intron 40.0%
! GCAGAAGGTTGATCCATTAT+TGG + chr3_1:94689949-94689968 None:intergenic 40.0%
TCTTGTAATGACACGCAGTA+TGG - chr3_1:94690094-94690113 Msa0389700:intron 40.0%
GTCCTATAAATAGGCATGAC+AGG + chr3_1:94690417-94690436 None:intergenic 40.0%
!!! GTTTTGAAGCAGACCAAGAA+AGG + chr3_1:94690485-94690504 None:intergenic 40.0%
CAAAGGTCACATCACAATGA+AGG - chr3_1:94690525-94690544 Msa0389700:intron 40.0%
!! CACAATGAAGGCATTGATTC+TGG - chr3_1:94690537-94690556 Msa0389700:intron 40.0%
!! ATGAAGGCATTGATTCTGGT+TGG - chr3_1:94690541-94690560 Msa0389700:intron 40.0%
GCAAAATCAACAAGAGGCTT+GGG + chr3_1:94690607-94690626 None:intergenic 40.0%
AGCAAAATCAACAAGAGGCT+TGG + chr3_1:94690608-94690627 None:intergenic 40.0%
CTTACCTGATGCAGAATCAT+GGG + chr3_1:94690637-94690656 None:intergenic 40.0%
TTACGATTGCTATGCTACCT+GGG - chr3_1:94690693-94690712 Msa0389700:intron 40.0%
AAACCATCTCTGATTTACCC+AGG + chr3_1:94690713-94690732 None:intergenic 40.0%
! CTGACTGACTCATGATATCA+GGG + chr3_1:94690770-94690789 None:intergenic 40.0%
! TCTGACTGACTCATGATATC+AGG + chr3_1:94690771-94690790 None:intergenic 40.0%
AATCCAGCAAGATTCAACGT+TGG + chr3_1:94690917-94690936 None:intergenic 40.0%
TGGAAATTCCGCCTTAATTG+CGG - chr3_1:94691007-94691026 Msa0389700:intron 40.0%
CTAACCAAAGGTCGCAATTT+AGG + chr3_1:94691047-94691066 None:intergenic 40.0%
TCTCAAAGCCAACACAATGA+AGG + chr3_1:94691091-94691110 None:intergenic 40.0%
!! TTCATTGTGTTGGCTTTGAG+AGG - chr3_1:94691090-94691109 Msa0389700:intron 40.0%
!! TCATTGTGTTGGCTTTGAGA+GGG - chr3_1:94691091-94691110 Msa0389700:intron 40.0%
GAGTACTATCTATCCGATGT+GGG + chr3_1:94691127-94691146 None:intergenic 40.0%
! AGAGTACTATCTATCCGATG+TGG + chr3_1:94691128-94691147 None:intergenic 40.0%
!! TTCGCACTTTTTGAGGAAAG+GGG + chr3_1:94691332-94691351 None:intergenic 40.0%
ATCTACTCACAGACAGCAAA+GGG + chr3_1:94691447-94691466 None:intergenic 40.0%
AGGAAAAACACATGAGGTGA+TGG + chr3_1:94691537-94691556 None:intergenic 40.0%
TTTGCAGATAGAGGCTCTTA+AGG - chr3_1:94691567-94691586 Msa0389700:intron 40.0%
ATAGAGGCTCTTAAGGACAT+TGG - chr3_1:94691574-94691593 Msa0389700:intron 40.0%
TCAATTACCAACCAGAGGTA+TGG - chr3_1:94691620-94691639 Msa0389700:intron 40.0%
TTGTGAACACTTCCTCTTGT+AGG - chr3_1:94691719-94691738 Msa0389700:intron 40.0%
CTCTCAAGAAACTGAACCAT+TGG - chr3_1:94691797-94691816 Msa0389700:intron 40.0%
CTCAAGAAACTGAACCATTG+GGG - chr3_1:94691799-94691818 Msa0389700:intron 40.0%
GAATTCCACAAATCTCATGG+AGG - chr3_1:94691933-94691952 Msa0389700:intron 40.0%
AGCTTCCATAATGGTGACAA+AGG - chr3_1:94691959-94691978 Msa0389700:intron 40.0%
! TGTTTTACATCTGCTTGTGC+AGG - chr3_1:94692039-94692058 Msa0389700:intron 40.0%
GTTGTTATGGAAGAGACTAC+CGG - chr3_1:94692088-94692107 Msa0389700:intron 40.0%
TTGTTATGGAAGAGACTACC+GGG - chr3_1:94692089-94692108 Msa0389700:intron 40.0%
AACAAATTTCTCAACCTGCC+CGG + chr3_1:94692110-94692129 None:intergenic 40.0%
GAGAAACCCAAGTTGTTTGT+TGG - chr3_1:94692130-94692149 Msa0389700:intron 40.0%
GTTGGCAACAAAATCAATGC+TGG - chr3_1:94692148-94692167 Msa0389700:intron 40.0%
ACCCACTTCTATTGAGAAAG+AGG - chr3_1:94692216-94692235 Msa0389700:intron 40.0%
CACCTCTTTCTCAATAGAAG+TGG + chr3_1:94692221-94692240 None:intergenic 40.0%
AGACCTGTTATATAGTCCCT+TGG + chr3_1:94692316-94692335 None:intergenic 40.0%
GAAGAAGACTTCTTCCAAGT+TGG - chr3_1:94692360-94692379 Msa0389700:intron 40.0%
TCACATTCCCCAAAATGTGA+GGG + chr3_1:94692393-94692412 None:intergenic 40.0%
ATCACATTCCCCAAAATGTG+AGG + chr3_1:94692394-94692413 None:intergenic 40.0%
ATTGGACCTGATGTTGCAAT+TGG - chr3_1:94692451-94692470 Msa0389700:intron 40.0%
! TCAAGTTGCACTGTAATGAG+AGG - chr3_1:94692508-94692527 Msa0389700:intron 40.0%
GCATTCAACTGTTGGTCAAT+GGG - chr3_1:94692579-94692598 Msa0389700:intron 40.0%
GTGGAGAATATGACTATCCT+TGG - chr3_1:94692607-94692626 Msa0389700:intron 40.0%
ATACATGGACATCTTCTCCA+AGG + chr3_1:94692627-94692646 None:intergenic 40.0%
GATGAAGTTTACAGCAATGG+TGG - chr3_1:94692649-94692668 Msa0389700:intron 40.0%
AATCCAGAGATAGTCATGTG+AGG - chr3_1:94692712-94692731 Msa0389700:intron 40.0%
TCTTAGCATGTAGTGTGTCT+AGG - chr3_1:94692751-94692770 Msa0389700:five_prime_UTR 40.0%
!! ACTGACTTTTACAATGTGCG+GGG + chr3_1:94692858-94692877 None:intergenic 40.0%
GTTTATTGGACTATCGTCGG+TGG + chr3_1:94688462-94688481 None:intergenic 45.0%
CAAGAAGACGAGTTAGAGTG+AGG + chr3_1:94688700-94688719 None:intergenic 45.0%
! CTTCTTGACTCGTTCGAGTT+AGG - chr3_1:94688713-94688732 Msa0389700:three_prime_UTR 45.0%
! GGACAAATGGATCTAGGACT+AGG - chr3_1:94689089-94689108 Msa0389700:CDS 45.0%
GCTTCAGCTATACCCTAATG+GGG - chr3_1:94689122-94689141 Msa0389700:CDS 45.0%
GATCGAACTCAACCCCATTA+GGG + chr3_1:94689137-94689156 None:intergenic 45.0%
TGATCGAACTCAACCCCATT+AGG + chr3_1:94689138-94689157 None:intergenic 45.0%
! CGATCACAGTGGTTAGTTAG+TGG - chr3_1:94689152-94689171 Msa0389700:CDS 45.0%
!!! CGGAGATTAGTTTTTCTCGG+TGG - chr3_1:94689325-94689344 Msa0389700:CDS 45.0%
TGCGTCTACTAACATTGCCA+TGG + chr3_1:94689483-94689502 None:intergenic 45.0%
GAGTGCCAAGTAACTAGGTT+TGG + chr3_1:94689665-94689684 None:intergenic 45.0%
CAAACAAGGATCATGGTACG+TGG + chr3_1:94689920-94689939 None:intergenic 45.0%
AGTGTACAGAGGATGTGACA+CGG + chr3_1:94690314-94690333 None:intergenic 45.0%
TGTTCTCTTCCAGCCTTTCT+TGG - chr3_1:94690469-94690488 Msa0389700:intron 45.0%
!! GATGTGACCTTTGCTTTTCC+AGG + chr3_1:94690518-94690537 None:intergenic 45.0%
!! AAGGCATTGATTCTGGTTGG+AGG - chr3_1:94690544-94690563 Msa0389700:intron 45.0%
!! AGGCATTGATTCTGGTTGGA+GGG - chr3_1:94690545-94690564 Msa0389700:intron 45.0%
! TTGATTCTGGTTGGAGGGTT+TGG - chr3_1:94690550-94690569 Msa0389700:intron 45.0%
CCTTACCTGATGCAGAATCA+TGG + chr3_1:94690638-94690657 None:intergenic 45.0%
CCATGATTCTGCATCAGGTA+AGG - chr3_1:94690635-94690654 Msa0389700:intron 45.0%
CTTACGATTGCTATGCTACC+TGG - chr3_1:94690692-94690711 Msa0389700:intron 45.0%
CTACCTGGGTAAATCAGAGA+TGG - chr3_1:94690707-94690726 Msa0389700:intron 45.0%
! AACGTTGGTTGTTGCCTTGT+TGG + chr3_1:94690902-94690921 None:intergenic 45.0%
CAACCAACGTTGAATCTTGC+TGG - chr3_1:94690911-94690930 Msa0389700:CDS 45.0%
GCTGGATTCTGTCAAAACTC+TGG - chr3_1:94690929-94690948 Msa0389700:CDS 45.0%
CTGCAATGAAGGCTAACCAA+AGG + chr3_1:94691059-94691078 None:intergenic 45.0%
!! CAACACAATGAAGGTGTTGG+AGG + chr3_1:94691082-94691101 None:intergenic 45.0%
CTCCAACACCTTCATTGTGT+TGG - chr3_1:94691080-94691099 Msa0389700:intron 45.0%
! AGCCAACACAATGAAGGTGT+TGG + chr3_1:94691085-94691104 None:intergenic 45.0%
!! CCTTACAAAACCGGCTTGTA+AGG + chr3_1:94691184-94691203 None:intergenic 45.0%
!! CCTTACAAGCCGGTTTTGTA+AGG - chr3_1:94691181-94691200 Msa0389700:intron 45.0%
!! TCGCACTTTTTGAGGAAAGG+GGG + chr3_1:94691331-94691350 None:intergenic 45.0%
TTGTTCTTGCTTGCGTGAGA+AGG - chr3_1:94691355-94691374 Msa0389700:intron 45.0%
CATCTACTCACAGACAGCAA+AGG + chr3_1:94691448-94691467 None:intergenic 45.0%
TTGCTGTCTGTGAGTAGATG+CGG - chr3_1:94691448-94691467 Msa0389700:intron 45.0%
GGACATTGGAGTTACTGAAG+TGG - chr3_1:94691588-94691607 Msa0389700:intron 45.0%
GGCTATCAATTACCAACCAG+AGG - chr3_1:94691615-94691634 Msa0389700:intron 45.0%
TGACACGGTTAGGAAAAGAG+AGG + chr3_1:94691652-94691671 None:intergenic 45.0%
TGAGAATGACTGACACGGTT+AGG + chr3_1:94691662-94691681 None:intergenic 45.0%
TTATCTCTGGCAAGAGCCAA+GGG + chr3_1:94691834-94691853 None:intergenic 45.0%
GCCAGAGATAAGCTGATTGA+TGG - chr3_1:94691843-94691862 Msa0389700:intron 45.0%
GCCATCAATCAGCTTATCTC+TGG + chr3_1:94691847-94691866 None:intergenic 45.0%
CTTCTCCTCCATGAGATTTG+TGG + chr3_1:94691941-94691960 None:intergenic 45.0%
TGGAGGAGAAGCTTCCATAA+TGG - chr3_1:94691950-94691969 Msa0389700:intron 45.0%
GTTGACGAGCCATCGAAATA+TGG - chr3_1:94692061-94692080 Msa0389700:intron 45.0%
CCAAAACTGAGGGGTTCAAT+AGG + chr3_1:94692180-94692199 None:intergenic 45.0%
! CCTATTGAACCCCTCAGTTT+TGG - chr3_1:94692177-94692196 Msa0389700:intron 45.0%
! CTATATGCAATGGTTCTGCC+TGG - chr3_1:94692268-94692287 Msa0389700:intron 45.0%
CAGCCAAGGGACTATATAAC+AGG - chr3_1:94692310-94692329 Msa0389700:intron 45.0%
GTGCATGAGACAGCCAAAAT+TGG - chr3_1:94692415-94692434 Msa0389700:intron 45.0%
GTACTATTGAGTCAGGTGTC+AGG - chr3_1:94692482-94692501 Msa0389700:intron 45.0%
GCACTGTAATGAGAGGAGTT+CGG - chr3_1:94692515-94692534 Msa0389700:intron 45.0%
TGCATATCCAGCAGCATCAT+CGG - chr3_1:94692553-94692572 Msa0389700:intron 45.0%
GGCATTCAACTGTTGGTCAA+TGG - chr3_1:94692578-94692597 Msa0389700:intron 45.0%
! AGTTTACAGCAATGGTGGTG+TGG - chr3_1:94692654-94692673 Msa0389700:intron 45.0%
TAGCCTCACATGACTATCTC+TGG + chr3_1:94692718-94692737 None:intergenic 45.0%
TAGCATGTAGTGTGTCTAGG+AGG - chr3_1:94692754-94692773 Msa0389700:five_prime_UTR 45.0%
! ACTTTTACAATGTGCGGGGA+AGG + chr3_1:94692854-94692873 None:intergenic 45.0%
CGCCAAACCCTCAATTCTTC+AGG - chr3_1:94688749-94688768 Msa0389700:exon 50.0%
GCCACTACTCCATTCAAACC+CGG - chr3_1:94689257-94689276 Msa0389700:CDS 50.0%
TCCGGGTTTGAATGGAGTAG+TGG + chr3_1:94689261-94689280 None:intergenic 50.0%
! TAGTTTTTCTCGGTGGCGTG+TGG - chr3_1:94689332-94689351 Msa0389700:CDS 50.0%
! AGTTTTTCTCGGTGGCGTGT+GGG - chr3_1:94689333-94689352 Msa0389700:CDS 50.0%
TCCTAGCTCGACCTCTGTTA+TGG - chr3_1:94689507-94689526 Msa0389700:intron 50.0%
ACCATAACAGAGGTCGAGCT+AGG + chr3_1:94689511-94689530 None:intergenic 50.0%
TGACAAGCAGAAGCTGAGTG+CGG - chr3_1:94689774-94689793 Msa0389700:intron 50.0%
CTGAGCTGACAAGTGTACAG+AGG + chr3_1:94690325-94690344 None:intergenic 50.0%
CTCTGTACACTTGTCAGCTC+AGG - chr3_1:94690323-94690342 Msa0389700:intron 50.0%
TGAAGCAGACCAAGAAAGGC+TGG + chr3_1:94690481-94690500 None:intergenic 50.0%
! TGGTTGGAGGGTTTGGAACA+AGG - chr3_1:94690557-94690576 Msa0389700:intron 50.0%
! GAGGGTTTGGAACAAGGTTG+AGG - chr3_1:94690563-94690582 Msa0389700:intron 50.0%
TTGGGAACGCTGAGTGTCAA+TGG + chr3_1:94690589-94690608 None:intergenic 50.0%
CAAGCCCATGATTCTGCATC+AGG - chr3_1:94690630-94690649 Msa0389700:intron 50.0%
GTCGCAATTTAGGCGACTAG+GGG + chr3_1:94691037-94691056 None:intergenic 50.0%
GGTCGCAATTTAGGCGACTA+GGG + chr3_1:94691038-94691057 None:intergenic 50.0%
AGGTCGCAATTTAGGCGACT+AGG + chr3_1:94691039-94691058 None:intergenic 50.0%
GTCGCCTAAATTGCGACCTT+TGG - chr3_1:94691040-94691059 Msa0389700:intron 50.0%
!! TTGTGTTGGCTTTGAGAGGG+TGG - chr3_1:94691094-94691113 Msa0389700:intron 50.0%
! GGGTGGATTTAGTCCCACAT+CGG - chr3_1:94691111-94691130 Msa0389700:intron 50.0%
!! CAAAACCGGCTTGTAAGGTG+AGG + chr3_1:94691179-94691198 None:intergenic 50.0%
!! GACAGCAAAGGGATGATGGA+AGG + chr3_1:94691436-94691455 None:intergenic 50.0%
CACAGACAGCAAAGGGATGA+TGG + chr3_1:94691440-94691459 None:intergenic 50.0%
TGCTGTCTGTGAGTAGATGC+GGG - chr3_1:94691449-94691468 Msa0389700:intron 50.0%
TGGAGTTACTGAAGTGGTGC+TGG - chr3_1:94691594-94691613 Msa0389700:intron 50.0%
GCACAATCCATACCTCTGGT+TGG + chr3_1:94691630-94691649 None:intergenic 50.0%
! AGAGGCACAATCCATACCTC+TGG + chr3_1:94691634-94691653 None:intergenic 50.0%
CTTATCTCTGGCAAGAGCCA+AGG + chr3_1:94691835-94691854 None:intergenic 50.0%
! CAATGGTTCTGCCTGGATTC+TGG - chr3_1:94692275-94692294 Msa0389700:intron 50.0%
CCAATGTCCATCCAGAATCC+AGG + chr3_1:94692289-94692308 None:intergenic 50.0%
CCTGGATTCTGGATGGACAT+TGG - chr3_1:94692286-94692305 Msa0389700:intron 50.0%
GATGGACATTGGACAGCCAA+GGG - chr3_1:94692297-94692316 Msa0389700:intron 50.0%
! AACAGGTCTGAGACTCTACC+TGG - chr3_1:94692327-94692346 Msa0389700:intron 50.0%
TCTTCTTCCTGAGTGAGTCC+AGG + chr3_1:94692348-94692367 None:intergenic 50.0%
! ACTTCTTCCAAGTTGGCCAG+TGG - chr3_1:94692367-94692386 Msa0389700:intron 50.0%
TGAGACAGCCAAAATTGGCG+AGG - chr3_1:94692420-94692439 Msa0389700:intron 50.0%
GAGACAGCCAAAATTGGCGA+GGG - chr3_1:94692421-94692440 Msa0389700:intron 50.0%
! GAGACATCCCTCGCCAATTT+TGG + chr3_1:94692431-94692450 None:intergenic 50.0%
ATTGGCGAGGGATGTCTCAT+TGG - chr3_1:94692433-94692452 Msa0389700:intron 50.0%
CCAGGACCAATTGCAACATC+AGG + chr3_1:94692460-94692479 None:intergenic 50.0%
CCTGATGTTGCAATTGGTCC+TGG - chr3_1:94692457-94692476 Msa0389700:intron 50.0%
CCTGACTCAATAGTACAGCC+AGG + chr3_1:94692478-94692497 None:intergenic 50.0%
CCTGGCTGTACTATTGAGTC+AGG - chr3_1:94692475-94692494 Msa0389700:intron 50.0%
GCATATCCAGCAGCATCATC+GGG - chr3_1:94692554-94692573 Msa0389700:intron 50.0%
ATCGGGTGGCATTCAACTGT+TGG - chr3_1:94692571-94692590 Msa0389700:intron 50.0%
TTACAATGTGCGGGGAAGGA+GGG + chr3_1:94692850-94692869 None:intergenic 50.0%
TTTACAATGTGCGGGGAAGG+AGG + chr3_1:94692851-94692870 None:intergenic 50.0%
GGGGTTGAGTTCGATCACAG+TGG - chr3_1:94689141-94689160 Msa0389700:CDS 55.0%
GGCGTGTGACCATTCAAACC+CGG - chr3_1:94689305-94689324 Msa0389700:CDS 55.0%
GACAAGCAGAAGCTGAGTGC+GGG - chr3_1:94689775-94689794 Msa0389700:intron 55.0%
ACAAGCAGAAGCTGAGTGCG+GGG - chr3_1:94689776-94689795 Msa0389700:intron 55.0%
CTAGGGGCAGACCGCAATTA+AGG + chr3_1:94691021-94691040 None:intergenic 55.0%
! GGTGTTGGAGGCTGCAATGA+AGG + chr3_1:94691070-94691089 None:intergenic 55.0%
GCACTCCTCACCTTACAAGC+CGG - chr3_1:94691171-94691190 Msa0389700:intron 55.0%
ACTGAACCATTGGGGACTGC+AGG - chr3_1:94691807-94691826 Msa0389700:intron 55.0%
TATGGAAGAGACTACCGGGC+AGG - chr3_1:94692093-94692112 Msa0389700:intron 55.0%
GGTTCTGCCTGGATTCTGGA+TGG - chr3_1:94692279-94692298 Msa0389700:intron 55.0%
GGATGGACATTGGACAGCCA+AGG - chr3_1:94692296-94692315 Msa0389700:intron 55.0%
GACTCTACCTGGACTCACTC+AGG - chr3_1:94692338-94692357 Msa0389700:intron 55.0%
! GCCAGTGGCCCTCACATTTT+GGG - chr3_1:94692382-94692401 Msa0389700:intron 55.0%
! CCAGTGGCCCTCACATTTTG+GGG - chr3_1:94692383-94692402 Msa0389700:intron 55.0%
TATCCAGCAGCATCATCGGG+TGG - chr3_1:94692557-94692576 Msa0389700:intron 55.0%
!! TGGTGTGGTTTTGCCCCACA+AGG - chr3_1:94692669-94692688 Msa0389700:intron 55.0%
GTGGCAAAGGGTGGCCTGTT+TGG - chr3_1:94689604-94689623 Msa0389700:CDS 60.0%
GGGGCAGACCGCAATTAAGG+CGG + chr3_1:94691018-94691037 None:intergenic 60.0%
AAGGGACCTGCAGTCCCCAA+TGG + chr3_1:94691816-94691835 None:intergenic 60.0%
ATTGGGGACTGCAGGTCCCT+TGG - chr3_1:94691815-94691834 Msa0389700:intron 60.0%
! GGCCAGTGGCCCTCACATTT+TGG - chr3_1:94692381-94692400 Msa0389700:intron 60.0%
CCCCAAAATGTGAGGGCCAC+TGG + chr3_1:94692386-94692405 None:intergenic 60.0%
ATGCCACCCGATGATGCTGC+TGG + chr3_1:94692563-94692582 None:intergenic 60.0%
! TGTTGGTCAATGGGCTCGCG+TGG - chr3_1:94692588-94692607 Msa0389700:intron 60.0%
GCAGAAGCTGAGTGCGGGGT+TGG - chr3_1:94689780-94689799 Msa0389700:intron 65.0%
GTGAGGGCCACTGGCCAACT+TGG + chr3_1:94692377-94692396 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 94688445 94693046 94688445 ID=Msa0389700;Name=Msa0389700
chr3_1 mRNA 94688445 94693046 94688445 ID=Msa0389700-mRNA-1;Parent=Msa0389700;Name=Msa0389700-mRNA-1;_AED=0.03;_eAED=0.03;_QI=385|1|1|1|0.75|0.6|5|314|361
chr3_1 exon 94688445 94689430 94688445 ID=Msa0389700-mRNA-1:exon:26942;Parent=Msa0389700-mRNA-1
chr3_1 exon 94689511 94689750 94689511 ID=Msa0389700-mRNA-1:exon:26941;Parent=Msa0389700-mRNA-1
chr3_1 exon 94689855 94689917 94689855 ID=Msa0389700-mRNA-1:exon:26940;Parent=Msa0389700-mRNA-1
chr3_1 exon 94690840 94691009 94690840 ID=Msa0389700-mRNA-1:exon:26939;Parent=Msa0389700-mRNA-1
chr3_1 exon 94692721 94693046 94692721 ID=Msa0389700-mRNA-1:exon:26938;Parent=Msa0389700-mRNA-1
chr3_1 five_prime_UTR 94692721 94693046 94692721 ID=Msa0389700-mRNA-1:five_prime_utr;Parent=Msa0389700-mRNA-1
chr3_1 five_prime_UTR 94690951 94691009 94690951 ID=Msa0389700-mRNA-1:five_prime_utr;Parent=Msa0389700-mRNA-1
chr3_1 CDS 94690840 94690950 94690840 ID=Msa0389700-mRNA-1:cds;Parent=Msa0389700-mRNA-1
chr3_1 CDS 94689855 94689917 94689855 ID=Msa0389700-mRNA-1:cds;Parent=Msa0389700-mRNA-1
chr3_1 CDS 94689511 94689750 94689511 ID=Msa0389700-mRNA-1:cds;Parent=Msa0389700-mRNA-1
chr3_1 CDS 94688759 94689430 94688759 ID=Msa0389700-mRNA-1:cds;Parent=Msa0389700-mRNA-1
chr3_1 three_prime_UTR 94688445 94688758 94688445 ID=Msa0389700-mRNA-1:three_prime_utr;Parent=Msa0389700-mRNA-1
Gene Sequence

>Msa0389700

ATGAAGGCATTGATTCTGGTTGGAGGGTTTGGAACAAGGTTGAGGCCATTGACACTCAGCGTTCCCAAGCCTCTTGTTGATTTTGCTAACAAGCCCATGATTCTGCATCAGATAGAGGCTCTTAAGGACATTGGAGTTACTGAAGTGGTGCTGGCTATCAATTACCAACCAGAGGTGATGTTGAATTTCTTGAAGGACTTTGAGGAAAAGCTCGACATCAAAATCACTTGCTCTCAAGAAACTGAACCATTGGGGACTGCAGGTCCCTTGGCTCTTGCCAGAGATAAGCTGATTGATGGCTCTAGTGAGCCATTTTTTGTTCTCAACAGCGATGTTATCAGTGAGTATCCACTCAAAGAAATGATAGAATTCCACAAATCTCATGGAGGAGAAGCTTCCATAATGGTGACAAAGGTTGACGAGCCATCGAAATATGGTGTAGTTGTTATGGAAGAGACTACCGGGCAGGTTGAGAAATTTGTTGAGAAACCCAAGTTGTTTGTTGGCAACAAAATCAATGCTGGGATCTACCTATTGAACCCCTCAGTTTTGGATCATATTGAACTGAGACCCACTTCTATTGAGAAAGAGGTGTTTCCAAAGATTGCAGCAAACAAAAAGCTATATGCAATGGTTCTGCCTGGATTCTGGATGGACATTGGACAGCCAAGGGACTATATAACAGGTCTGAGACTCTACCTGGACTCACTCAGGAAGAAGACTTCTTCCAAGTTGGCCAGTGGCCCTCACATTTTGGGGAATGTGATTGTGCATGAGACAGCCAAAATTGGCGAGGGATGTCTCATTGGACCTGATGTTGCAATTGGTCCTGGCTGTACTATTGAGTCAGGTGTCAGGCTTTCAAGTTGCACTGTAATGAGAGGAGTTCGGATTAAGAAGCATGCTTGCATATCCAGCAGCATCATCGGGTGGCATTCAACTGTTGGTCAATGGGCTCGCGTGGAGAATATGACTATCCTTGGAGAAGATGTCCATGTATCTGATGAAGTTTACAGCAATGGTGGTGTGGTTTTGCCCCACAAGGAAATCAAAACAAGCATTCTGAATCCAGAGATAGTCATGTGA
Protein sequence

>Msa0389700

MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKDIGVTEVVLAINYQPEVMLNFLKDFEEKLDIKITCSQETEPLGTAGPLALARDKLIDGSSEPFFVLNSDVISEYPLKEMIEFHKSHGGEASIMVTKVDEPSKYGVVVMEETTGQVEKFVEKPKLFVGNKINAGIYLLNPSVLDHIELRPTSIEKEVFPKIAANKKLYAMVLPGFWMDIGQPRDYITGLRLYLDSLRKKTSSKLASGPHILGNVIVHETAKIGEGCLIGPDVAIGPGCTIESGVRLSSCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVSDEVYSNGGVVLPHKEIKTSILNPEIVM*