AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0480270

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0480270 MtrunA17_Chr3g0112401 99.169 361 3 0 1 361 1 361 0.0 728
Msa0480270 MtrunA17_Chr5g0435771 93.075 361 25 0 1 361 1 361 0.0 686
Msa0480270 MtrunA17_Chr4g0076111 74.618 327 38 2 35 361 9 290 4.29e-171 478
Msa0480270 MtrunA17_Chr3g0118161 32.250 400 223 7 3 354 10 409 5.41e-64 209
Msa0480270 MtrunA17_Chr6g0451921 32.432 407 226 8 3 361 9 414 6.12e-63 206
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0480270 AT2G39770.2 90.859 361 33 0 1 361 1 361 0.0 679
Msa0480270 AT2G39770.3 90.859 361 33 0 1 361 1 361 0.0 679
Msa0480270 AT2G39770.1 90.859 361 33 0 1 361 1 361 0.0 679
Msa0480270 AT3G55590.1 83.516 364 57 1 1 361 1 364 0.0 627
Msa0480270 AT4G30570.1 76.596 329 76 1 21 348 1 329 0.0 517
Msa0480270 AT2G04650.1 32.570 393 224 7 3 354 8 400 1.27e-65 213
Msa0480270 AT2G04650.2 32.208 385 222 6 9 354 4 388 4.01e-65 212
Msa0480270 AT1G74910.2 31.034 406 232 8 3 361 11 415 4.81e-65 212
Msa0480270 AT1G74910.1 31.034 406 232 8 3 361 11 415 4.81e-65 212
Msa0480270 AT1G74910.3 30.411 365 216 6 3 329 11 375 3.34e-58 194

Find 142 sgRNAs with CRISPR-Local

Find 349 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGAATATGCCTTGTTTAT+TGG 0.092539 3_3:-85518339 None:intergenic
ATTCAATTGGAAGTTATTTA+TGG 0.139429 3_3:+85518435 Msa0480270:five_prime_UTR
ATTATTTGAGGTCACAAAAT+TGG 0.150473 3_3:+85522864 Msa0480270:three_prime_UTR
CCTTTCAACTTTATAAATTA+TGG 0.169583 3_3:-85522767 None:intergenic
GGCCAGTGGCCCTCACATTT+TGG 0.174139 3_3:+85522250 Msa0480270:CDS
TGTTCTCTTCCAGCCTTTCT+TGG 0.191543 3_3:+85520339 Msa0480270:intron
CTTCTTGACTCGTTCGAGTT+AGG 0.194509 3_3:+85518580 Msa0480270:five_prime_UTR
GAGACATCCCTCGCCAATTT+TGG 0.195747 3_3:-85522297 None:intergenic
CAATGGTTCTGCCTGGATTC+TGG 0.230745 3_3:+85522144 Msa0480270:CDS
TTGATTCTGGTTGGAGGGTT+TGG 0.231295 3_3:+85520420 Msa0480270:CDS
CACACTACATGCTAAGAATT+TGG 0.235614 3_3:-85522614 None:intergenic
CACAATGAAGGCATTGATTC+TGG 0.244864 3_3:+85520407 Msa0480270:exon
CGCCAAACCCTCAATTCTTC+AGG 0.259392 3_3:+85518616 Msa0480270:five_prime_UTR
CCTATTGAACCCCTCAGTTT+TGG 0.269147 3_3:+85522046 Msa0480270:CDS
TGTTACTTGAAGACTTAAAA+AGG 0.276415 3_3:+85518361 Msa0480270:five_prime_UTR
AATTACCTTTGTCACCATTA+TGG 0.298623 3_3:-85521832 None:intergenic
ACTCGATCGGTGCCACTAAA+AGG 0.303711 3_3:-85522908 None:intergenic
TTCTTGACTCGTTCGAGTTA+GGG 0.345159 3_3:+85518581 Msa0480270:five_prime_UTR
CACTGAAAATTACACAGCTT+TGG 0.355062 3_3:-85522822 None:intergenic
AAATATGTATTCATTTCATT+TGG 0.358212 3_3:+85522670 Msa0480270:three_prime_UTR
GTGCATGAGACAGCCAAAAT+TGG 0.360392 3_3:+85522284 Msa0480270:CDS
TTATTTGAGGTCACAAAATT+GGG 0.367629 3_3:+85522865 Msa0480270:three_prime_UTR
GTTGACGAGCCATCGAAATA+TGG 0.375253 3_3:+85521930 Msa0480270:CDS
TTTGCAGATAGAGGCTCTTA+AGG 0.376635 3_3:+85521435 Msa0480270:intron
TATAGTTATTCTAATTCAAT+TGG 0.378406 3_3:+85518422 Msa0480270:five_prime_UTR
GGCATTCAACTGTTGGTCAA+TGG 0.378871 3_3:+85522447 Msa0480270:CDS
GCATTCAACTGTTGGTCAAT+GGG 0.390410 3_3:+85522448 Msa0480270:CDS
CTTCTCCTCCATGAGATTTG+TGG 0.394590 3_3:-85521806 None:intergenic
GAAATATGGTGTAGTTGTTA+TGG 0.396468 3_3:+85521944 Msa0480270:CDS
CAAAATTGGGATTCTTTGAC+AGG 0.413907 3_3:+85522878 Msa0480270:three_prime_UTR
CCAAAACTGAGGGGTTCAAT+AGG 0.416025 3_3:-85522046 None:intergenic
CTCTCAAGAAACTGAACCAT+TGG 0.424571 3_3:+85521665 Msa0480270:CDS
AGCAAAATCAACAAGAGGCT+TGG 0.428162 3_3:-85520475 None:intergenic
AAAGAAACCTGAAGAATTGA+GGG 0.431335 3_3:-85518623 None:intergenic
AACCTGAAGAATTGAGGGTT+TGG 0.432730 3_3:-85518618 None:intergenic
ATTGGACCTGATGTTGCAAT+TGG 0.435688 3_3:+85522320 Msa0480270:CDS
CAAGCCCATGATTCTGCATC+AGG 0.436008 3_3:+85520500 Msa0480270:CDS
ATTGGGGACTGCAGGTCCCT+TGG 0.442280 3_3:+85521683 Msa0480270:CDS
CCCCAAAATGTGAGGGCCAC+TGG 0.444498 3_3:-85522252 None:intergenic
GAATTTCTTGAAGGACTTTG+AGG 0.444711 3_3:+85521617 Msa0480270:CDS
CCTGATGTTGCAATTGGTCC+TGG 0.445714 3_3:+85522326 Msa0480270:CDS
CAGCCAAGGGACTATATAAC+AGG 0.445775 3_3:+85522179 Msa0480270:CDS
GCCAGAGATAAGCTGATTGA+TGG 0.448757 3_3:+85521711 Msa0480270:CDS
AAAAGAAACCTGAAGAATTG+AGG 0.451583 3_3:-85518624 None:intergenic
GTGAGGGCCACTGGCCAACT+TGG 0.453022 3_3:-85522243 None:intergenic
TAGCCTCACATGACTATCTC+TGG 0.457298 3_3:-85522584 None:intergenic
GTTGGCAACAAAATCAATGC+TGG 0.457593 3_3:+85522017 Msa0480270:CDS
GCAAAATCAACAAGAGGCTT+GGG 0.462216 3_3:-85520474 None:intergenic
GTACTATTGAGTCAGGTGTC+AGG 0.462789 3_3:+85522351 Msa0480270:CDS
CCTTACCTGATGCAGAATCA+TGG 0.467053 3_3:-85520505 None:intergenic
TCTCAAGAAACTGAACCATT+GGG 0.467960 3_3:+85521666 Msa0480270:CDS
TTTGTTGCCAACAAACAACT+TGG 0.477074 3_3:-85522006 None:intergenic
ATTGGCGAGGGATGTCTCAT+TGG 0.477910 3_3:+85522302 Msa0480270:CDS
AATTCTATCATTTCTTTGAG+TGG 0.484489 3_3:-85521783 None:intergenic
GGTGATGTTGAATTTCTTGA+AGG 0.486495 3_3:+85521608 Msa0480270:intron
GCCATCAATCAGCTTATCTC+TGG 0.487352 3_3:-85521712 None:intergenic
GAGAAACCCAAGTTGTTTGT+TGG 0.488405 3_3:+85521999 Msa0480270:CDS
TGCATATCCAGCAGCATCAT+CGG 0.488487 3_3:+85522422 Msa0480270:CDS
CCTGGCTGTACTATTGAGTC+AGG 0.491456 3_3:+85522344 Msa0480270:CDS
TTGGGAACGCTGAGTGTCAA+TGG 0.493354 3_3:-85520456 None:intergenic
ACGATAGTATTGGTCAATGT+TGG 0.496606 3_3:-85518484 None:intergenic
ACCCACTTCTATTGAGAAAG+AGG 0.506248 3_3:+85522085 Msa0480270:CDS
TGGAGGAGAAGCTTCCATAA+TGG 0.508219 3_3:+85521818 Msa0480270:CDS
AATTGGAAGTTATTTATGGA+TGG 0.510192 3_3:+85518439 Msa0480270:five_prime_UTR
GCATATCCAGCAGCATCATC+GGG 0.514239 3_3:+85522423 Msa0480270:CDS
TGGTTGGAGGGTTTGGAACA+AGG 0.517924 3_3:+85520427 Msa0480270:CDS
GAGGGTTTGGAACAAGGTTG+AGG 0.519056 3_3:+85520433 Msa0480270:CDS
ATGAAGGCATTGATTCTGGT+TGG 0.520723 3_3:+85520411 Msa0480270:CDS
GAAGAAGACTTCTTCCAAGT+TGG 0.520882 3_3:+85522229 Msa0480270:CDS
ATCGGGTGGCATTCAACTGT+TGG 0.522221 3_3:+85522440 Msa0480270:CDS
CCTGGATTCTGGATGGACAT+TGG 0.522294 3_3:+85522155 Msa0480270:CDS
ATAGAATTCCACAAATCTCA+TGG 0.522477 3_3:+85521798 Msa0480270:CDS
CTATATGCAATGGTTCTGCC+TGG 0.525369 3_3:+85522137 Msa0480270:CDS
AACAGGTCTGAGACTCTACC+TGG 0.527965 3_3:+85522196 Msa0480270:CDS
CCAATGTCCATCCAGAATCC+AGG 0.528298 3_3:-85522155 None:intergenic
CCAGGACCAATTGCAACATC+AGG 0.528530 3_3:-85522326 None:intergenic
AACAAATTTCTCAACCTGCC+CGG 0.528886 3_3:-85521976 None:intergenic
ACTGAACCATTGGGGACTGC+AGG 0.534135 3_3:+85521675 Msa0480270:CDS
TCTTAGCATGTAGTGTGTCT+AGG 0.536433 3_3:+85522620 Msa0480270:three_prime_UTR
AGACCTGTTATATAGTCCCT+TGG 0.537146 3_3:-85522182 None:intergenic
CTTATCTCTGGCAAGAGCCA+AGG 0.538273 3_3:-85521700 None:intergenic
ATGCCACCCGATGATGCTGC+TGG 0.538528 3_3:-85522429 None:intergenic
TGGAGTTACTGAAGTGGTGC+TGG 0.539605 3_3:+85521462 Msa0480270:CDS
CAAAGGTCACATCACAATGA+AGG 0.540103 3_3:+85520395 Msa0480270:exon
GCACTGTAATGAGAGGAGTT+CGG 0.540270 3_3:+85522384 Msa0480270:CDS
CACCTCTTTCTCAATAGAAG+TGG 0.543517 3_3:-85522087 None:intergenic
TGTTGGTCAATGGGCTCGCG+TGG 0.545394 3_3:+85522457 Msa0480270:CDS
AGGCATTGATTCTGGTTGGA+GGG 0.546975 3_3:+85520415 Msa0480270:CDS
AAGGCATTGATTCTGGTTGG+AGG 0.548820 3_3:+85520414 Msa0480270:CDS
CTTGTTTATTGGACTATCGT+CGG 0.549459 3_3:-85518328 None:intergenic
TTTACAATGTGCGGGGAAGG+AGG 0.549974 3_3:-85522717 None:intergenic
TTGGCAACAAAATCAATGCT+GGG 0.556088 3_3:+85522018 Msa0480270:CDS
CCATAATTTATAAAGTTGAA+AGG 0.559634 3_3:+85522767 Msa0480270:three_prime_UTR
GTGGAGAATATGACTATCCT+TGG 0.561456 3_3:+85522476 Msa0480270:CDS
ATAGAGGCTCTTAAGGACAT+TGG 0.566425 3_3:+85521442 Msa0480270:CDS
TCTTCTTCCTGAGTGAGTCC+AGG 0.570610 3_3:-85522214 None:intergenic
TTATCTCTGGCAAGAGCCAA+GGG 0.571035 3_3:-85521699 None:intergenic
TCAATATGATCCAAAACTGA+GGG 0.571408 3_3:-85522056 None:intergenic
GACTCTACCTGGACTCACTC+AGG 0.571470 3_3:+85522207 Msa0480270:CDS
CTTACCTGATGCAGAATCAT+GGG 0.572676 3_3:-85520504 None:intergenic
CTACATGCTAAGAATTTGGA+AGG 0.578323 3_3:-85522610 None:intergenic
ACCTCTTTCTCAATAGAAGT+GGG 0.579545 3_3:-85522086 None:intergenic
ATGAGGTGTTACGATAGTAT+TGG 0.580339 3_3:-85518494 None:intergenic
TATGGAAGAGACTACCGGGC+AGG 0.580495 3_3:+85521962 Msa0480270:CDS
TTACAATGTGCGGGGAAGGA+GGG 0.581779 3_3:-85522716 None:intergenic
TTGTTGCCAACAAACAACTT+GGG 0.582555 3_3:-85522005 None:intergenic
GGTTCTGCCTGGATTCTGGA+TGG 0.583086 3_3:+85522148 Msa0480270:CDS
ATCACATTCCCCAAAATGTG+AGG 0.586656 3_3:-85522260 None:intergenic
TCAGTGTCTATGTAAAGAGT+TGG 0.587085 3_3:+85522790 Msa0480270:three_prime_UTR
AGCTTCCATAATGGTGACAA+AGG 0.594491 3_3:+85521827 Msa0480270:CDS
GGATGGACATTGGACAGCCA+AGG 0.596026 3_3:+85522165 Msa0480270:CDS
CGACGATAGTCCAATAAACA+AGG 0.605330 3_3:+85518329 Msa0480270:five_prime_UTR
TTCAATATGATCCAAAACTG+AGG 0.607441 3_3:-85522057 None:intergenic
GATGGACATTGGACAGCCAA+GGG 0.607762 3_3:+85522166 Msa0480270:CDS
TCAAGTTGCACTGTAATGAG+AGG 0.608923 3_3:+85522377 Msa0480270:CDS
AAGGGACCTGCAGTCCCCAA+TGG 0.610136 3_3:-85521681 None:intergenic
ACTTCTTCCAAGTTGGCCAG+TGG 0.612092 3_3:+85522236 Msa0480270:CDS
GTTGTTATGGAAGAGACTAC+CGG 0.612863 3_3:+85521957 Msa0480270:CDS
TAGCATGTAGTGTGTCTAGG+AGG 0.613908 3_3:+85522623 Msa0480270:three_prime_UTR
ACAACTACACCATATTTCGA+TGG 0.616973 3_3:-85521939 None:intergenic
TTGTTAGCAAAATCAACAAG+AGG 0.621493 3_3:-85520480 None:intergenic
TGAGACAGCCAAAATTGGCG+AGG 0.624566 3_3:+85522289 Msa0480270:CDS
GCACAATCCATACCTCTGGT+TGG 0.626350 3_3:-85521495 None:intergenic
GTTTATTGGACTATCGTCGG+TGG 0.627252 3_3:-85518325 None:intergenic
CCTGACTCAATAGTACAGCC+AGG 0.628206 3_3:-85522344 None:intergenic
ATACATGGACATCTTCTCCA+AGG 0.629569 3_3:-85522493 None:intergenic
CTCAAGAAACTGAACCATTG+GGG 0.633701 3_3:+85521667 Msa0480270:CDS
TGTAAACTTCATCAGATACA+TGG 0.633717 3_3:-85522508 None:intergenic
TTGTTATGGAAGAGACTACC+GGG 0.634181 3_3:+85521958 Msa0480270:CDS
TCTGATGAAGTTTACAGCAA+TGG 0.634276 3_3:+85522515 Msa0480270:CDS
GAGACAGCCAAAATTGGCGA+GGG 0.639601 3_3:+85522290 Msa0480270:CDS
GGACATTGGAGTTACTGAAG+TGG 0.642199 3_3:+85521456 Msa0480270:CDS
TCACATTCCCCAAAATGTGA+GGG 0.643108 3_3:-85522259 None:intergenic
CAAGAAGACGAGTTAGAGTG+AGG 0.652032 3_3:-85518564 None:intergenic
AGTTTACAGCAATGGTGGTG+TGG 0.665559 3_3:+85522523 Msa0480270:CDS
GGCTATCAATTACCAACCAG+AGG 0.681698 3_3:+85521483 Msa0480270:CDS
GATGAAGTTTACAGCAATGG+TGG 0.691163 3_3:+85522518 Msa0480270:CDS
TATCCAGCAGCATCATCGGG+TGG 0.692094 3_3:+85522426 Msa0480270:CDS
TGGAATGGTGAAACTGAATG+AGG 0.696240 3_3:-85518511 None:intergenic
AATCCAGAGATAGTCATGTG+AGG 0.703190 3_3:+85522581 Msa0480270:CDS
CAATATGATCCAAAACTGAG+GGG 0.719526 3_3:-85522055 None:intergenic
GAATTCCACAAATCTCATGG+AGG 0.748000 3_3:+85521801 Msa0480270:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGAGAATTAATAATAATAAA+GGG - chr3_3:85518690-85518709 None:intergenic 10.0%
!! TTGAGAATTAATAATAATAA+AGG - chr3_3:85518691-85518710 None:intergenic 10.0%
!! TATAGTTATTCTAATTCAAT+TGG + chr3_3:85518422-85518441 Msa0480270:five_prime_UTR 15.0%
!! AAGAACAAAAAAAAAAAAAC+TGG - chr3_3:85518534-85518553 None:intergenic 15.0%
!!! TATATAAAGTTGGTTTTTTT+AGG + chr3_3:85518935-85518954 Msa0480270:intron 15.0%
!!! TAGATAAAAGTTAAGTTTTT+AGG + chr3_3:85520116-85520135 Msa0480270:intron 15.0%
!!! AGATAAAAGTTAAGTTTTTA+GGG + chr3_3:85520117-85520136 Msa0480270:intron 15.0%
!! AAATATGTATTCATTTCATT+TGG + chr3_3:85522670-85522689 Msa0480270:three_prime_UTR 15.0%
!! ATTCAATTGGAAGTTATTTA+TGG + chr3_3:85518435-85518454 Msa0480270:five_prime_UTR 20.0%
!! CAAAAAAAAAAAAACTGGAA+TGG - chr3_3:85518529-85518548 None:intergenic 20.0%
!! TGGTGGAAATTATTTAAAAA+AGG + chr3_3:85518875-85518894 Msa0480270:intron 20.0%
!! AATGTTGAGATATATAAAGT+TGG + chr3_3:85518925-85518944 Msa0480270:intron 20.0%
!! ATATTTGAAAAACTAATCTC+CGG - chr3_3:85519147-85519166 None:intergenic 20.0%
!!! GATTAGTTTTTCAAATATGT+CGG + chr3_3:85519149-85519168 Msa0480270:intron 20.0%
!!! GGCTTTTTTATAAAATTTTC+AGG - chr3_3:85519322-85519341 None:intergenic 20.0%
!! ATTATTGGTATATTCAAACA+AGG - chr3_3:85519803-85519822 None:intergenic 20.0%
!! TTGTTTGAATATACCAATAA+TGG + chr3_3:85519802-85519821 Msa0480270:intron 20.0%
!!! TTGGATAATGTTAAGTTTTT+AGG + chr3_3:85520004-85520023 Msa0480270:intron 20.0%
!!! TGGATAATGTTAAGTTTTTA+GGG + chr3_3:85520005-85520024 Msa0480270:intron 20.0%
!! ATTTGCATAAATAAAACTAC+TGG - chr3_3:85520232-85520251 None:intergenic 20.0%
!!! TTCAAAACATTTAATTTTCC+TGG + chr3_3:85520367-85520386 Msa0480270:five_prime_UTR 20.0%
!! TATACTTTGACATACTAAAA+TGG - chr3_3:85520834-85520853 None:intergenic 20.0%
!!! AAATCAACTTGTTGAAATTT+GGG - chr3_3:85521086-85521105 None:intergenic 20.0%
!!! TAAATCAACTTGTTGAAATT+TGG - chr3_3:85521087-85521106 None:intergenic 20.0%
!! TATCTGCAAAACAAATTAAA+AGG - chr3_3:85521425-85521444 None:intergenic 20.0%
!! CCTTTCAACTTTATAAATTA+TGG - chr3_3:85522770-85522789 None:intergenic 20.0%
!! CCATAATTTATAAAGTTGAA+AGG + chr3_3:85522767-85522786 Msa0480270:three_prime_UTR 20.0%
!!! CAGAATTTTCTTATTATTTG+AGG + chr3_3:85522852-85522871 Msa0480270:three_prime_UTR 20.0%
!!! ATTGAATATGCCTTGTTTAT+TGG - chr3_3:85518342-85518361 None:intergenic 25.0%
!! TGTTACTTGAAGACTTAAAA+AGG + chr3_3:85518361-85518380 Msa0480270:five_prime_UTR 25.0%
! AATTGGAAGTTATTTATGGA+TGG + chr3_3:85518439-85518458 Msa0480270:five_prime_UTR 25.0%
!!! GTTTCTTTGTGTTTTTTCAT+TGG + chr3_3:85518795-85518814 Msa0480270:intron 25.0%
!!! TGCTTTTAATTCAAGCTTTT+TGG + chr3_3:85518855-85518874 Msa0480270:intron 25.0%
!!! TTTTAATTCAAGCTTTTTGG+TGG + chr3_3:85518858-85518877 Msa0480270:intron 25.0%
!!! TTAGGGTTTTTAAGATCAAA+TGG + chr3_3:85519080-85519099 Msa0480270:intron 25.0%
!!! TAGGGTTTTTAAGATCAAAT+GGG + chr3_3:85519081-85519100 Msa0480270:intron 25.0%
! TATTTGAAAAACTAATCTCC+GGG - chr3_3:85519146-85519165 None:intergenic 25.0%
! TCAATTAAGCTTAAGATACA+AGG - chr3_3:85520031-85520050 None:intergenic 25.0%
! AATTCAAGAAACTCAAGAAA+CGG - chr3_3:85520542-85520561 None:intergenic 25.0%
! AGGGAGAAAATATAACATAT+AGG - chr3_3:85520619-85520638 None:intergenic 25.0%
!! ACAATTTTTCATATCCAACA+AGG + chr3_3:85520753-85520772 Msa0480270:intron 25.0%
!!! AATCAACTTGTTGAAATTTG+GGG - chr3_3:85521085-85521104 None:intergenic 25.0%
!!! TGTTTTAGGTTAATATAGTG+TGG + chr3_3:85521143-85521162 Msa0480270:intron 25.0%
!!! GTTTTAGGTTAATATAGTGT+GGG + chr3_3:85521144-85521163 Msa0480270:intron 25.0%
! ATTAAAAGGAAAAACACATG+AGG - chr3_3:85521411-85521430 None:intergenic 25.0%
!!! TTAATTTGTTTTGCAGATAG+AGG + chr3_3:85521426-85521445 Msa0480270:intron 25.0%
! AATTCTATCATTTCTTTGAG+TGG - chr3_3:85521786-85521805 None:intergenic 25.0%
! AAACAAAAAGCTATATGCAA+TGG + chr3_3:85522127-85522146 Msa0480270:CDS 25.0%
!! ATTATTTGAGGTCACAAAAT+TGG + chr3_3:85522864-85522883 Msa0480270:three_prime_UTR 25.0%
!! TTATTTGAGGTCACAAAATT+GGG + chr3_3:85522865-85522884 Msa0480270:three_prime_UTR 25.0%
AAAGAAACCTGAAGAATTGA+GGG - chr3_3:85518626-85518645 None:intergenic 30.0%
AAAAGAAACCTGAAGAATTG+AGG - chr3_3:85518627-85518646 None:intergenic 30.0%
CTAATCACAAGCATACAATT+TGG - chr3_3:85518757-85518776 None:intergenic 30.0%
!!! GTTGGTTTTTTTAGGACAAA+TGG + chr3_3:85518943-85518962 Msa0480270:intron 30.0%
!!! TTTTTAGGACAAATGGATCT+AGG + chr3_3:85518950-85518969 Msa0480270:intron 30.0%
AGTTAGTGGAATGTAACATA+AGG + chr3_3:85519033-85519052 Msa0480270:intron 30.0%
!!! AATAGTGTCGGTAAAGTTTT+TGG - chr3_3:85519062-85519081 None:intergenic 30.0%
AAAACTTTACCGACACTATT+AGG + chr3_3:85519062-85519081 Msa0480270:intron 30.0%
AAACTTTACCGACACTATTA+GGG + chr3_3:85519063-85519082 Msa0480270:intron 30.0%
CTTAAAAACCCTAATAGTGT+CGG - chr3_3:85519074-85519093 None:intergenic 30.0%
!!! AGGGTTTTTAAGATCAAATG+GGG + chr3_3:85519082-85519101 Msa0480270:intron 30.0%
!! TAGTTTTTCAAATATGTCGG+TGG + chr3_3:85519152-85519171 Msa0480270:intron 30.0%
CAATTGAAACAAAGTTGCTT+CGG + chr3_3:85519234-85519253 Msa0480270:intron 30.0%
!!! ATAAAAAAGCCGTTTTTCCA+TGG + chr3_3:85519331-85519350 Msa0480270:intron 30.0%
!! TATCGCAAAACTTGTTGATA+TGG + chr3_3:85519440-85519459 Msa0480270:intron 30.0%
GTTGATATGGTTAATCAATG+TGG + chr3_3:85519453-85519472 Msa0480270:intron 30.0%
! CTTTACTTTGAAAGCCATAT+AGG + chr3_3:85519577-85519596 Msa0480270:intron 30.0%
! ACAGAAAGCTAGTTTATCTA+GGG - chr3_3:85519714-85519733 None:intergenic 30.0%
GTATATTCAAACAAGGATCA+TGG - chr3_3:85519796-85519815 None:intergenic 30.0%
AAACTATTTAATCGTGCAGA+AGG - chr3_3:85519833-85519852 None:intergenic 30.0%
ATTACAAGAATCATAGACGT+AGG - chr3_3:85519952-85519971 None:intergenic 30.0%
!!! GTCTTTTTTCTTACTGCTTT+TGG + chr3_3:85519985-85520004 Msa0480270:intron 30.0%
TCAACTAAGCTTAAGATACA+AGG - chr3_3:85520143-85520162 None:intergenic 30.0%
TTCTATGCTGTCCTATAAAT+AGG - chr3_3:85520296-85520315 None:intergenic 30.0%
! TAATTTTCCTGGAAAAGCAA+AGG + chr3_3:85520378-85520397 Msa0480270:five_prime_UTR 30.0%
TTGTTAGCAAAATCAACAAG+AGG - chr3_3:85520483-85520502 None:intergenic 30.0%
ATTCAAGAAACTCAAGAAAC+GGG - chr3_3:85520541-85520560 None:intergenic 30.0%
TGGATATGAAAAATTGTTGC+AGG - chr3_3:85520750-85520769 None:intergenic 30.0%
! ATTTTCTGAATGAGTTGTGT+TGG + chr3_3:85520855-85520874 Msa0480270:intron 30.0%
CTTGAGAAGAGTTTATAAAG+AGG + chr3_3:85521014-85521033 Msa0480270:intron 30.0%
AACCTAAAACACGTTAATGA+TGG - chr3_3:85521134-85521153 None:intergenic 30.0%
!! ACAATTTTTCGCACTTTTTG+AGG - chr3_3:85521207-85521226 None:intergenic 30.0%
ATAGAATTCCACAAATCTCA+TGG + chr3_3:85521798-85521817 Msa0480270:CDS 30.0%
AATTACCTTTGTCACCATTA+TGG - chr3_3:85521835-85521854 None:intergenic 30.0%
ATGGTGACAAAGGTAATTAA+CGG + chr3_3:85521837-85521856 Msa0480270:intron 30.0%
GAAATATGGTGTAGTTGTTA+TGG + chr3_3:85521944-85521963 Msa0480270:CDS 30.0%
TCAATATGATCCAAAACTGA+GGG - chr3_3:85522059-85522078 None:intergenic 30.0%
TTCAATATGATCCAAAACTG+AGG - chr3_3:85522060-85522079 None:intergenic 30.0%
!! TTTTTGTTTGCTGCAATCTT+TGG - chr3_3:85522116-85522135 None:intergenic 30.0%
TGTAAACTTCATCAGATACA+TGG - chr3_3:85522511-85522530 None:intergenic 30.0%
!! AAACTGACTTTTACAATGTG+CGG - chr3_3:85522729-85522748 None:intergenic 30.0%
CTTGTTTATTGGACTATCGT+CGG - chr3_3:85518331-85518350 None:intergenic 35.0%
!! ACGATAGTATTGGTCAATGT+TGG - chr3_3:85518487-85518506 None:intergenic 35.0%
! ATGAGGTGTTACGATAGTAT+TGG - chr3_3:85518497-85518516 None:intergenic 35.0%
!! TTACTTTTGTCATGCTCACA+AGG + chr3_3:85518711-85518730 Msa0480270:intron 35.0%
!!! GGGTTTTTAAGATCAAATGG+GGG + chr3_3:85519083-85519102 Msa0480270:intron 35.0%
CTAACATTGCCATGGAAAAA+CGG - chr3_3:85519343-85519362 None:intergenic 35.0%
ACGTGAATATGTGACCTAAT+CGG + chr3_3:85519401-85519420 Msa0480270:intron 35.0%
ATGGTTAATCAATGTGGCAA+AGG + chr3_3:85519459-85519478 Msa0480270:intron 35.0%
TGGTTAATCAATGTGGCAAA+GGG + chr3_3:85519460-85519479 Msa0480270:intron 35.0%
AAAATTCACCAACTCCAAAC+AGG - chr3_3:85519489-85519508 None:intergenic 35.0%
TAACTAGGTTTGGCTACTAA+GGG - chr3_3:85519524-85519543 None:intergenic 35.0%
AAGCCATATAGGAAATCTTC+TGG + chr3_3:85519588-85519607 Msa0480270:intron 35.0%
ATGCCAGAAGATTTCCTATA+TGG - chr3_3:85519594-85519613 None:intergenic 35.0%
! AATCTTCTGGCATTGAAAGA+AGG + chr3_3:85519601-85519620 Msa0480270:intron 35.0%
! CACAGAAAGCTAGTTTATCT+AGG - chr3_3:85519715-85519734 None:intergenic 35.0%
TGGTCATTACAGCTTAACTT+TGG - chr3_3:85519769-85519788 None:intergenic 35.0%
AGCTAGTATCATTTCATAGC+TGG + chr3_3:85519870-85519889 Msa0480270:intron 35.0%
GGAAGTAAAAGCGAATCAAA+AGG - chr3_3:85519926-85519945 None:intergenic 35.0%
AAGAATCATAGACGTAGGAA+CGG - chr3_3:85519947-85519966 None:intergenic 35.0%
! ACAGGAACAAATAACTTGCA+AGG - chr3_3:85520269-85520288 None:intergenic 35.0%
TTCCTGTCATGCCTATTTAT+AGG + chr3_3:85520282-85520301 Msa0480270:intron 35.0%
TTCAAGAAACTCAAGAAACG+GGG - chr3_3:85520540-85520559 None:intergenic 35.0%
TGCAAGATATTTCAGCAGAA+TGG + chr3_3:85520692-85520711 Msa0480270:intron 35.0%
GCAAGATATTTCAGCAGAAT+GGG + chr3_3:85520693-85520712 Msa0480270:intron 35.0%
GAGAAGAGTTTATAAAGAGG+AGG + chr3_3:85521017-85521036 Msa0480270:intron 35.0%
CTAACTCATCCTTACAAAAC+CGG - chr3_3:85521061-85521080 None:intergenic 35.0%
CTAAAACACGTTAATGATGG+AGG - chr3_3:85521131-85521150 None:intergenic 35.0%
! CTCCATCATTAACGTGTTTT+AGG + chr3_3:85521129-85521148 Msa0480270:intron 35.0%
!! TTTCGCACTTTTTGAGGAAA+GGG - chr3_3:85521201-85521220 None:intergenic 35.0%
!! TTTTCGCACTTTTTGAGGAA+AGG - chr3_3:85521202-85521221 None:intergenic 35.0%
TTCATTGAGAATGACTGACA+CGG - chr3_3:85521535-85521554 None:intergenic 35.0%
AATTCAACATCACCTACAAG+AGG - chr3_3:85521602-85521621 None:intergenic 35.0%
GGTGATGTTGAATTTCTTGA+AGG + chr3_3:85521608-85521627 Msa0480270:intron 35.0%
GAATTTCTTGAAGGACTTTG+AGG + chr3_3:85521617-85521636 Msa0480270:CDS 35.0%
TCTCAAGAAACTGAACCATT+GGG + chr3_3:85521666-85521685 Msa0480270:CDS 35.0%
TCGCTGTTGAGAACAAAAAA+TGG - chr3_3:85521747-85521766 None:intergenic 35.0%
ACAACTACACCATATTTCGA+TGG - chr3_3:85521942-85521961 None:intergenic 35.0%
TTGTTGCCAACAAACAACTT+GGG - chr3_3:85522008-85522027 None:intergenic 35.0%
TTTGTTGCCAACAAACAACT+TGG - chr3_3:85522009-85522028 None:intergenic 35.0%
TTGGCAACAAAATCAATGCT+GGG + chr3_3:85522018-85522037 Msa0480270:CDS 35.0%
CAATATGATCCAAAACTGAG+GGG - chr3_3:85522058-85522077 None:intergenic 35.0%
ACCTCTTTCTCAATAGAAGT+GGG - chr3_3:85522089-85522108 None:intergenic 35.0%
TCTGATGAAGTTTACAGCAA+TGG + chr3_3:85522515-85522534 Msa0480270:CDS 35.0%
!!! CTTGTTTTGATTTCCTTGTG+GGG - chr3_3:85522554-85522573 None:intergenic 35.0%
!!! GCTTGTTTTGATTTCCTTGT+GGG - chr3_3:85522555-85522574 None:intergenic 35.0%
!!! TGCTTGTTTTGATTTCCTTG+TGG - chr3_3:85522556-85522575 None:intergenic 35.0%
CTACATGCTAAGAATTTGGA+AGG - chr3_3:85522613-85522632 None:intergenic 35.0%
CACACTACATGCTAAGAATT+TGG - chr3_3:85522617-85522636 None:intergenic 35.0%
!! AACTGACTTTTACAATGTGC+GGG - chr3_3:85522728-85522747 None:intergenic 35.0%
TCAGTGTCTATGTAAAGAGT+TGG + chr3_3:85522790-85522809 Msa0480270:three_prime_UTR 35.0%
CACTGAAAATTACACAGCTT+TGG - chr3_3:85522825-85522844 None:intergenic 35.0%
CAAAATTGGGATTCTTTGAC+AGG + chr3_3:85522878-85522897 Msa0480270:three_prime_UTR 35.0%
CGACGATAGTCCAATAAACA+AGG + chr3_3:85518329-85518348 Msa0480270:five_prime_UTR 40.0%
TGGAATGGTGAAACTGAATG+AGG - chr3_3:85518514-85518533 None:intergenic 40.0%
! TTCTTGACTCGTTCGAGTTA+GGG + chr3_3:85518581-85518600 Msa0480270:five_prime_UTR 40.0%
AACCTGAAGAATTGAGGGTT+TGG - chr3_3:85518621-85518640 None:intergenic 40.0%
TAGGGTATAGCTGAAGCTAA+AGG - chr3_3:85518986-85519005 None:intergenic 40.0%
TAGCTTCAGCTATACCCTAA+TGG + chr3_3:85518987-85519006 Msa0480270:intron 40.0%
AGCTTCAGCTATACCCTAAT+GGG + chr3_3:85518988-85519007 Msa0480270:intron 40.0%
AACTAATCTCCGGGTTTGAA+TGG - chr3_3:85519137-85519156 None:intergenic 40.0%
AACTAATCTCCGGGTTTGAA+TGG - chr3_3:85519137-85519156 None:intergenic 40.0%
!!! ACCCGGAGATTAGTTTTTCT+CGG + chr3_3:85519190-85519209 Msa0480270:intron 40.0%
ACCGAGAAAAACTAATCTCC+GGG - chr3_3:85519194-85519213 None:intergenic 40.0%
CACCGAGAAAAACTAATCTC+CGG - chr3_3:85519195-85519214 None:intergenic 40.0%
ATTCACGTGTACCATAACAG+AGG - chr3_3:85519389-85519408 None:intergenic 40.0%
ACACAAGATTGAGTCCGATT+AGG - chr3_3:85519418-85519437 None:intergenic 40.0%
TTAATCAATGTGGCAAAGGG+TGG + chr3_3:85519463-85519482 Msa0480270:intron 40.0%
GTAACTAGGTTTGGCTACTA+AGG - chr3_3:85519525-85519544 None:intergenic 40.0%
AGTAGCCAAACCTAGTTACT+TGG + chr3_3:85519526-85519545 Msa0480270:intron 40.0%
! CATTAGAGTGCCAAGTAACT+AGG - chr3_3:85519539-85519558 None:intergenic 40.0%
!!! GGGTTGGATTAGCTTAGTTT+TGG + chr3_3:85519665-85519684 Msa0480270:intron 40.0%
! GCAGAAGGTTGATCCATTAT+TGG - chr3_3:85519818-85519837 None:intergenic 40.0%
TCTTGTAATGACACGCAGTA+TGG + chr3_3:85519963-85519982 Msa0480270:intron 40.0%
GTCCTATAAATAGGCATGAC+AGG - chr3_3:85520287-85520306 None:intergenic 40.0%
!!! GTTTTGAAGCAGACCAAGAA+AGG - chr3_3:85520355-85520374 None:intergenic 40.0%
CAAAGGTCACATCACAATGA+AGG + chr3_3:85520395-85520414 Msa0480270:exon 40.0%
!! CACAATGAAGGCATTGATTC+TGG + chr3_3:85520407-85520426 Msa0480270:exon 40.0%
!! ATGAAGGCATTGATTCTGGT+TGG + chr3_3:85520411-85520430 Msa0480270:CDS 40.0%
GCAAAATCAACAAGAGGCTT+GGG - chr3_3:85520477-85520496 None:intergenic 40.0%
AGCAAAATCAACAAGAGGCT+TGG - chr3_3:85520478-85520497 None:intergenic 40.0%
CTTACCTGATGCAGAATCAT+GGG - chr3_3:85520507-85520526 None:intergenic 40.0%
TTACGATTGCTATGCTACCT+GGG + chr3_3:85520563-85520582 Msa0480270:intron 40.0%
AAACCATCTCTGATTTACCC+AGG - chr3_3:85520583-85520602 None:intergenic 40.0%
! CTGACTGACTCATGATATCA+GGG - chr3_3:85520638-85520657 None:intergenic 40.0%
! TCTGACTGACTCATGATATC+AGG - chr3_3:85520639-85520658 None:intergenic 40.0%
AATCCAGCAAGATTCAACGT+TGG - chr3_3:85520785-85520804 None:intergenic 40.0%
TGGAAATTCCGCCTTAATTG+CGG + chr3_3:85520875-85520894 Msa0480270:intron 40.0%
CTAACCAAAGGTCGCAATTT+AGG - chr3_3:85520915-85520934 None:intergenic 40.0%
TCTCAAAGCCAACACAATGA+AGG - chr3_3:85520959-85520978 None:intergenic 40.0%
!! TTCATTGTGTTGGCTTTGAG+AGG + chr3_3:85520958-85520977 Msa0480270:intron 40.0%
!! TCATTGTGTTGGCTTTGAGA+GGG + chr3_3:85520959-85520978 Msa0480270:intron 40.0%
GAGTACTATCTATCCGATGT+GGG - chr3_3:85520995-85521014 None:intergenic 40.0%
! AGAGTACTATCTATCCGATG+TGG - chr3_3:85520996-85521015 None:intergenic 40.0%
!! TTCGCACTTTTTGAGGAAAG+GGG - chr3_3:85521200-85521219 None:intergenic 40.0%
ATCTACTCACAGACAGCAAA+GGG - chr3_3:85521315-85521334 None:intergenic 40.0%
AGGAAAAACACATGAGGTGA+TGG - chr3_3:85521405-85521424 None:intergenic 40.0%
TTTGCAGATAGAGGCTCTTA+AGG + chr3_3:85521435-85521454 Msa0480270:intron 40.0%
ATAGAGGCTCTTAAGGACAT+TGG + chr3_3:85521442-85521461 Msa0480270:CDS 40.0%
TCAATTACCAACCAGAGGTA+TGG + chr3_3:85521488-85521507 Msa0480270:intron 40.0%
TTGTGAACACTTCCTCTTGT+AGG + chr3_3:85521587-85521606 Msa0480270:intron 40.0%
CTCTCAAGAAACTGAACCAT+TGG + chr3_3:85521665-85521684 Msa0480270:CDS 40.0%
CTCAAGAAACTGAACCATTG+GGG + chr3_3:85521667-85521686 Msa0480270:CDS 40.0%
GAATTCCACAAATCTCATGG+AGG + chr3_3:85521801-85521820 Msa0480270:CDS 40.0%
AGCTTCCATAATGGTGACAA+AGG + chr3_3:85521827-85521846 Msa0480270:CDS 40.0%
! TGTTTTACATCTGCTTGTGC+AGG + chr3_3:85521908-85521927 Msa0480270:intron 40.0%
GTTGTTATGGAAGAGACTAC+CGG + chr3_3:85521957-85521976 Msa0480270:CDS 40.0%
TTGTTATGGAAGAGACTACC+GGG + chr3_3:85521958-85521977 Msa0480270:CDS 40.0%
AACAAATTTCTCAACCTGCC+CGG - chr3_3:85521979-85521998 None:intergenic 40.0%
GAGAAACCCAAGTTGTTTGT+TGG + chr3_3:85521999-85522018 Msa0480270:CDS 40.0%
GTTGGCAACAAAATCAATGC+TGG + chr3_3:85522017-85522036 Msa0480270:CDS 40.0%
ACCCACTTCTATTGAGAAAG+AGG + chr3_3:85522085-85522104 Msa0480270:CDS 40.0%
CACCTCTTTCTCAATAGAAG+TGG - chr3_3:85522090-85522109 None:intergenic 40.0%
AGACCTGTTATATAGTCCCT+TGG - chr3_3:85522185-85522204 None:intergenic 40.0%
GAAGAAGACTTCTTCCAAGT+TGG + chr3_3:85522229-85522248 Msa0480270:CDS 40.0%
TCACATTCCCCAAAATGTGA+GGG - chr3_3:85522262-85522281 None:intergenic 40.0%
ATCACATTCCCCAAAATGTG+AGG - chr3_3:85522263-85522282 None:intergenic 40.0%
ATTGGACCTGATGTTGCAAT+TGG + chr3_3:85522320-85522339 Msa0480270:CDS 40.0%
! TCAAGTTGCACTGTAATGAG+AGG + chr3_3:85522377-85522396 Msa0480270:CDS 40.0%
GCATTCAACTGTTGGTCAAT+GGG + chr3_3:85522448-85522467 Msa0480270:CDS 40.0%
GTGGAGAATATGACTATCCT+TGG + chr3_3:85522476-85522495 Msa0480270:CDS 40.0%
ATACATGGACATCTTCTCCA+AGG - chr3_3:85522496-85522515 None:intergenic 40.0%
GATGAAGTTTACAGCAATGG+TGG + chr3_3:85522518-85522537 Msa0480270:CDS 40.0%
AATCCAGAGATAGTCATGTG+AGG + chr3_3:85522581-85522600 Msa0480270:CDS 40.0%
TCTTAGCATGTAGTGTGTCT+AGG + chr3_3:85522620-85522639 Msa0480270:three_prime_UTR 40.0%
!! ACTGACTTTTACAATGTGCG+GGG - chr3_3:85522727-85522746 None:intergenic 40.0%
GTTTATTGGACTATCGTCGG+TGG - chr3_3:85518328-85518347 None:intergenic 45.0%
CAAGAAGACGAGTTAGAGTG+AGG - chr3_3:85518567-85518586 None:intergenic 45.0%
! CTTCTTGACTCGTTCGAGTT+AGG + chr3_3:85518580-85518599 Msa0480270:five_prime_UTR 45.0%
! GGACAAATGGATCTAGGACT+AGG + chr3_3:85518956-85518975 Msa0480270:intron 45.0%
GCTTCAGCTATACCCTAATG+GGG + chr3_3:85518989-85519008 Msa0480270:intron 45.0%
GATCGAACTCAACCCCATTA+GGG - chr3_3:85519004-85519023 None:intergenic 45.0%
TGATCGAACTCAACCCCATT+AGG - chr3_3:85519005-85519024 None:intergenic 45.0%
! CGATCACAGTGGTTAGTTAG+TGG + chr3_3:85519019-85519038 Msa0480270:intron 45.0%
!!! CGGAGATTAGTTTTTCTCGG+TGG + chr3_3:85519193-85519212 Msa0480270:intron 45.0%
TGCGTCTACTAACATTGCCA+TGG - chr3_3:85519351-85519370 None:intergenic 45.0%
GAGTGCCAAGTAACTAGGTT+TGG - chr3_3:85519534-85519553 None:intergenic 45.0%
CAAACAAGGATCATGGTACG+TGG - chr3_3:85519789-85519808 None:intergenic 45.0%
AGTGTACAGAGGATGTGACA+CGG - chr3_3:85520184-85520203 None:intergenic 45.0%
TGTTCTCTTCCAGCCTTTCT+TGG + chr3_3:85520339-85520358 Msa0480270:intron 45.0%
!! GATGTGACCTTTGCTTTTCC+AGG - chr3_3:85520388-85520407 None:intergenic 45.0%
!! AAGGCATTGATTCTGGTTGG+AGG + chr3_3:85520414-85520433 Msa0480270:CDS 45.0%
!! AGGCATTGATTCTGGTTGGA+GGG + chr3_3:85520415-85520434 Msa0480270:CDS 45.0%
! TTGATTCTGGTTGGAGGGTT+TGG + chr3_3:85520420-85520439 Msa0480270:CDS 45.0%
CCTTACCTGATGCAGAATCA+TGG - chr3_3:85520508-85520527 None:intergenic 45.0%
CCATGATTCTGCATCAGGTA+AGG + chr3_3:85520505-85520524 Msa0480270:intron 45.0%
CTTACGATTGCTATGCTACC+TGG + chr3_3:85520562-85520581 Msa0480270:intron 45.0%
CTACCTGGGTAAATCAGAGA+TGG + chr3_3:85520577-85520596 Msa0480270:intron 45.0%
! AACGTTGGTTGTTGCCTTGT+TGG - chr3_3:85520770-85520789 None:intergenic 45.0%
CAACCAACGTTGAATCTTGC+TGG + chr3_3:85520779-85520798 Msa0480270:intron 45.0%
GCTGGATTCTGTCAAAACTC+TGG + chr3_3:85520797-85520816 Msa0480270:intron 45.0%
CTGCAATGAAGGCTAACCAA+AGG - chr3_3:85520927-85520946 None:intergenic 45.0%
!! CAACACAATGAAGGTGTTGG+AGG - chr3_3:85520950-85520969 None:intergenic 45.0%
CTCCAACACCTTCATTGTGT+TGG + chr3_3:85520948-85520967 Msa0480270:intron 45.0%
! AGCCAACACAATGAAGGTGT+TGG - chr3_3:85520953-85520972 None:intergenic 45.0%
!! CCTTACAAAACCGGCTTGTA+AGG - chr3_3:85521052-85521071 None:intergenic 45.0%
!! CCTTACAAGCCGGTTTTGTA+AGG + chr3_3:85521049-85521068 Msa0480270:intron 45.0%
!! TCGCACTTTTTGAGGAAAGG+GGG - chr3_3:85521199-85521218 None:intergenic 45.0%
TTGTTCTTGCTTGCGTGAGA+AGG + chr3_3:85521223-85521242 Msa0480270:intron 45.0%
CATCTACTCACAGACAGCAA+AGG - chr3_3:85521316-85521335 None:intergenic 45.0%
TTGCTGTCTGTGAGTAGATG+CGG + chr3_3:85521316-85521335 Msa0480270:intron 45.0%
GGACATTGGAGTTACTGAAG+TGG + chr3_3:85521456-85521475 Msa0480270:CDS 45.0%
GGCTATCAATTACCAACCAG+AGG + chr3_3:85521483-85521502 Msa0480270:CDS 45.0%
TGACACGGTTAGGAAAAGAG+AGG - chr3_3:85521520-85521539 None:intergenic 45.0%
TGAGAATGACTGACACGGTT+AGG - chr3_3:85521530-85521549 None:intergenic 45.0%
TTATCTCTGGCAAGAGCCAA+GGG - chr3_3:85521702-85521721 None:intergenic 45.0%
GCCAGAGATAAGCTGATTGA+TGG + chr3_3:85521711-85521730 Msa0480270:CDS 45.0%
GCCATCAATCAGCTTATCTC+TGG - chr3_3:85521715-85521734 None:intergenic 45.0%
CTTCTCCTCCATGAGATTTG+TGG - chr3_3:85521809-85521828 None:intergenic 45.0%
TGGAGGAGAAGCTTCCATAA+TGG + chr3_3:85521818-85521837 Msa0480270:CDS 45.0%
GTTGACGAGCCATCGAAATA+TGG + chr3_3:85521930-85521949 Msa0480270:CDS 45.0%
CCAAAACTGAGGGGTTCAAT+AGG - chr3_3:85522049-85522068 None:intergenic 45.0%
! CCTATTGAACCCCTCAGTTT+TGG + chr3_3:85522046-85522065 Msa0480270:CDS 45.0%
! CTATATGCAATGGTTCTGCC+TGG + chr3_3:85522137-85522156 Msa0480270:CDS 45.0%
CAGCCAAGGGACTATATAAC+AGG + chr3_3:85522179-85522198 Msa0480270:CDS 45.0%
GTGCATGAGACAGCCAAAAT+TGG + chr3_3:85522284-85522303 Msa0480270:CDS 45.0%
GTACTATTGAGTCAGGTGTC+AGG + chr3_3:85522351-85522370 Msa0480270:CDS 45.0%
GCACTGTAATGAGAGGAGTT+CGG + chr3_3:85522384-85522403 Msa0480270:CDS 45.0%
TGCATATCCAGCAGCATCAT+CGG + chr3_3:85522422-85522441 Msa0480270:CDS 45.0%
GGCATTCAACTGTTGGTCAA+TGG + chr3_3:85522447-85522466 Msa0480270:CDS 45.0%
! AGTTTACAGCAATGGTGGTG+TGG + chr3_3:85522523-85522542 Msa0480270:CDS 45.0%
TAGCCTCACATGACTATCTC+TGG - chr3_3:85522587-85522606 None:intergenic 45.0%
TAGCATGTAGTGTGTCTAGG+AGG + chr3_3:85522623-85522642 Msa0480270:three_prime_UTR 45.0%
! ACTTTTACAATGTGCGGGGA+AGG - chr3_3:85522723-85522742 None:intergenic 45.0%
CGCCAAACCCTCAATTCTTC+AGG + chr3_3:85518616-85518635 Msa0480270:five_prime_UTR 50.0%
GCCACTACTCCATTCAAACC+CGG + chr3_3:85519125-85519144 Msa0480270:intron 50.0%
TCCGGGTTTGAATGGAGTAG+TGG - chr3_3:85519129-85519148 None:intergenic 50.0%
! TAGTTTTTCTCGGTGGCGTG+TGG + chr3_3:85519200-85519219 Msa0480270:intron 50.0%
! AGTTTTTCTCGGTGGCGTGT+GGG + chr3_3:85519201-85519220 Msa0480270:intron 50.0%
TCCTAGCTCGACCTCTGTTA+TGG + chr3_3:85519375-85519394 Msa0480270:intron 50.0%
ACCATAACAGAGGTCGAGCT+AGG - chr3_3:85519379-85519398 None:intergenic 50.0%
TGACAAGCAGAAGCTGAGTG+CGG + chr3_3:85519643-85519662 Msa0480270:intron 50.0%
CTGAGCTGACAAGTGTACAG+AGG - chr3_3:85520195-85520214 None:intergenic 50.0%
CTCTGTACACTTGTCAGCTC+AGG + chr3_3:85520193-85520212 Msa0480270:intron 50.0%
TGAAGCAGACCAAGAAAGGC+TGG - chr3_3:85520351-85520370 None:intergenic 50.0%
! TGGTTGGAGGGTTTGGAACA+AGG + chr3_3:85520427-85520446 Msa0480270:CDS 50.0%
! GAGGGTTTGGAACAAGGTTG+AGG + chr3_3:85520433-85520452 Msa0480270:CDS 50.0%
TTGGGAACGCTGAGTGTCAA+TGG - chr3_3:85520459-85520478 None:intergenic 50.0%
CAAGCCCATGATTCTGCATC+AGG + chr3_3:85520500-85520519 Msa0480270:CDS 50.0%
GTCGCAATTTAGGCGACTAG+GGG - chr3_3:85520905-85520924 None:intergenic 50.0%
GGTCGCAATTTAGGCGACTA+GGG - chr3_3:85520906-85520925 None:intergenic 50.0%
AGGTCGCAATTTAGGCGACT+AGG - chr3_3:85520907-85520926 None:intergenic 50.0%
GTCGCCTAAATTGCGACCTT+TGG + chr3_3:85520908-85520927 Msa0480270:intron 50.0%
!! TTGTGTTGGCTTTGAGAGGG+TGG + chr3_3:85520962-85520981 Msa0480270:intron 50.0%
! GGGTGGATTTAGTCCCACAT+CGG + chr3_3:85520979-85520998 Msa0480270:intron 50.0%
!! CAAAACCGGCTTGTAAGGTG+AGG - chr3_3:85521047-85521066 None:intergenic 50.0%
!! GACAGCAAAGGGATGATGGA+AGG - chr3_3:85521304-85521323 None:intergenic 50.0%
CACAGACAGCAAAGGGATGA+TGG - chr3_3:85521308-85521327 None:intergenic 50.0%
TGCTGTCTGTGAGTAGATGC+GGG + chr3_3:85521317-85521336 Msa0480270:intron 50.0%
TGGAGTTACTGAAGTGGTGC+TGG + chr3_3:85521462-85521481 Msa0480270:CDS 50.0%
GCACAATCCATACCTCTGGT+TGG - chr3_3:85521498-85521517 None:intergenic 50.0%
! AGAGGCACAATCCATACCTC+TGG - chr3_3:85521502-85521521 None:intergenic 50.0%
CTTATCTCTGGCAAGAGCCA+AGG - chr3_3:85521703-85521722 None:intergenic 50.0%
! CAATGGTTCTGCCTGGATTC+TGG + chr3_3:85522144-85522163 Msa0480270:CDS 50.0%
CCAATGTCCATCCAGAATCC+AGG - chr3_3:85522158-85522177 None:intergenic 50.0%
CCTGGATTCTGGATGGACAT+TGG + chr3_3:85522155-85522174 Msa0480270:CDS 50.0%
GATGGACATTGGACAGCCAA+GGG + chr3_3:85522166-85522185 Msa0480270:CDS 50.0%
! AACAGGTCTGAGACTCTACC+TGG + chr3_3:85522196-85522215 Msa0480270:CDS 50.0%
TCTTCTTCCTGAGTGAGTCC+AGG - chr3_3:85522217-85522236 None:intergenic 50.0%
! ACTTCTTCCAAGTTGGCCAG+TGG + chr3_3:85522236-85522255 Msa0480270:CDS 50.0%
TGAGACAGCCAAAATTGGCG+AGG + chr3_3:85522289-85522308 Msa0480270:CDS 50.0%
GAGACAGCCAAAATTGGCGA+GGG + chr3_3:85522290-85522309 Msa0480270:CDS 50.0%
! GAGACATCCCTCGCCAATTT+TGG - chr3_3:85522300-85522319 None:intergenic 50.0%
ATTGGCGAGGGATGTCTCAT+TGG + chr3_3:85522302-85522321 Msa0480270:CDS 50.0%
CCAGGACCAATTGCAACATC+AGG - chr3_3:85522329-85522348 None:intergenic 50.0%
CCTGATGTTGCAATTGGTCC+TGG + chr3_3:85522326-85522345 Msa0480270:CDS 50.0%
CCTGACTCAATAGTACAGCC+AGG - chr3_3:85522347-85522366 None:intergenic 50.0%
CCTGGCTGTACTATTGAGTC+AGG + chr3_3:85522344-85522363 Msa0480270:CDS 50.0%
GCATATCCAGCAGCATCATC+GGG + chr3_3:85522423-85522442 Msa0480270:CDS 50.0%
ATCGGGTGGCATTCAACTGT+TGG + chr3_3:85522440-85522459 Msa0480270:CDS 50.0%
TTACAATGTGCGGGGAAGGA+GGG - chr3_3:85522719-85522738 None:intergenic 50.0%
TTTACAATGTGCGGGGAAGG+AGG - chr3_3:85522720-85522739 None:intergenic 50.0%
GGGGTTGAGTTCGATCACAG+TGG + chr3_3:85519008-85519027 Msa0480270:intron 55.0%
GGCGTGTGACCATTCAAACC+CGG + chr3_3:85519173-85519192 Msa0480270:intron 55.0%
! AAGGGTGGCCTGTTTGGAGT+TGG + chr3_3:85519478-85519497 Msa0480270:intron 55.0%
GACAAGCAGAAGCTGAGTGC+GGG + chr3_3:85519644-85519663 Msa0480270:intron 55.0%
ACAAGCAGAAGCTGAGTGCG+GGG + chr3_3:85519645-85519664 Msa0480270:intron 55.0%
CTAGGGGCAGACCGCAATTA+AGG - chr3_3:85520889-85520908 None:intergenic 55.0%
! GGTGTTGGAGGCTGCAATGA+AGG - chr3_3:85520938-85520957 None:intergenic 55.0%
GCACTCCTCACCTTACAAGC+CGG + chr3_3:85521039-85521058 Msa0480270:intron 55.0%
ACTGAACCATTGGGGACTGC+AGG + chr3_3:85521675-85521694 Msa0480270:CDS 55.0%
TATGGAAGAGACTACCGGGC+AGG + chr3_3:85521962-85521981 Msa0480270:CDS 55.0%
GGTTCTGCCTGGATTCTGGA+TGG + chr3_3:85522148-85522167 Msa0480270:CDS 55.0%
GGATGGACATTGGACAGCCA+AGG + chr3_3:85522165-85522184 Msa0480270:CDS 55.0%
GACTCTACCTGGACTCACTC+AGG + chr3_3:85522207-85522226 Msa0480270:CDS 55.0%
! GCCAGTGGCCCTCACATTTT+GGG + chr3_3:85522251-85522270 Msa0480270:CDS 55.0%
! CCAGTGGCCCTCACATTTTG+GGG + chr3_3:85522252-85522271 Msa0480270:CDS 55.0%
TATCCAGCAGCATCATCGGG+TGG + chr3_3:85522426-85522445 Msa0480270:CDS 55.0%
!! TGGTGTGGTTTTGCCCCACA+AGG + chr3_3:85522538-85522557 Msa0480270:CDS 55.0%
GTGGCAAAGGGTGGCCTGTT+TGG + chr3_3:85519472-85519491 Msa0480270:intron 60.0%
GGGGCAGACCGCAATTAAGG+CGG - chr3_3:85520886-85520905 None:intergenic 60.0%
AAGGGACCTGCAGTCCCCAA+TGG - chr3_3:85521684-85521703 None:intergenic 60.0%
ATTGGGGACTGCAGGTCCCT+TGG + chr3_3:85521683-85521702 Msa0480270:CDS 60.0%
! GGCCAGTGGCCCTCACATTT+TGG + chr3_3:85522250-85522269 Msa0480270:CDS 60.0%
CCCCAAAATGTGAGGGCCAC+TGG - chr3_3:85522255-85522274 None:intergenic 60.0%
ATGCCACCCGATGATGCTGC+TGG - chr3_3:85522432-85522451 None:intergenic 60.0%
! TGTTGGTCAATGGGCTCGCG+TGG + chr3_3:85522457-85522476 Msa0480270:CDS 60.0%
GCAGAAGCTGAGTGCGGGGT+TGG + chr3_3:85519649-85519668 Msa0480270:intron 65.0%
GTGAGGGCCACTGGCCAACT+TGG - chr3_3:85522246-85522265 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 85518311 85522915 85518311 ID=Msa0480270;Name=Msa0480270
chr3_3 mRNA 85518311 85522915 85518311 ID=Msa0480270-mRNA-1;Parent=Msa0480270;Name=Msa0480270-mRNA-1;_AED=0.04;_eAED=0.04;_QI=386|1|1|1|0.75|0.6|5|314|361
chr3_3 exon 85518311 85518637 85518311 ID=Msa0480270-mRNA-1:exon:24587;Parent=Msa0480270-mRNA-1
chr3_3 exon 85520352 85520521 85520352 ID=Msa0480270-mRNA-1:exon:24588;Parent=Msa0480270-mRNA-1
chr3_3 exon 85521442 85521504 85521442 ID=Msa0480270-mRNA-1:exon:24589;Parent=Msa0480270-mRNA-1
chr3_3 exon 85521609 85521848 85521609 ID=Msa0480270-mRNA-1:exon:24590;Parent=Msa0480270-mRNA-1
chr3_3 exon 85521930 85522915 85521930 ID=Msa0480270-mRNA-1:exon:24591;Parent=Msa0480270-mRNA-1
chr3_3 five_prime_UTR 85518311 85518637 85518311 ID=Msa0480270-mRNA-1:five_prime_utr;Parent=Msa0480270-mRNA-1
chr3_3 five_prime_UTR 85520352 85520410 85520352 ID=Msa0480270-mRNA-1:five_prime_utr;Parent=Msa0480270-mRNA-1
chr3_3 CDS 85520411 85520521 85520411 ID=Msa0480270-mRNA-1:cds;Parent=Msa0480270-mRNA-1
chr3_3 CDS 85521442 85521504 85521442 ID=Msa0480270-mRNA-1:cds;Parent=Msa0480270-mRNA-1
chr3_3 CDS 85521609 85521848 85521609 ID=Msa0480270-mRNA-1:cds;Parent=Msa0480270-mRNA-1
chr3_3 CDS 85521930 85522601 85521930 ID=Msa0480270-mRNA-1:cds;Parent=Msa0480270-mRNA-1
chr3_3 three_prime_UTR 85522602 85522915 85522602 ID=Msa0480270-mRNA-1:three_prime_utr;Parent=Msa0480270-mRNA-1
Gene Sequence

>Msa0480270

ATGAAGGCATTGATTCTGGTTGGAGGGTTTGGAACAAGGTTGAGGCCATTGACACTCAGCGTTCCCAAGCCTCTTGTTGATTTTGCTAACAAGCCCATGATTCTGCATCAGATAGAGGCTCTTAAGGACATTGGAGTTACTGAAGTGGTGCTGGCTATCAATTACCAACCAGAGGTGATGTTGAATTTCTTGAAGGACTTTGAGGAAAAGCTCGACATCAAAATCACTTGCTCTCAAGAAACTGAACCATTGGGGACTGCAGGTCCCTTGGCTCTTGCCAGAGATAAGCTGATTGATGGCTCTAGTGAGCCATTTTTTGTTCTCAACAGCGATGTTATCAGTGAGTATCCACTCAAAGAAATGATAGAATTCCACAAATCTCATGGAGGAGAAGCTTCCATAATGGTGACAAAGGTTGACGAGCCATCGAAATATGGTGTAGTTGTTATGGAAGAGACTACCGGGCAGGTTGAGAAATTTGTTGAGAAACCCAAGTTGTTTGTTGGCAACAAAATCAATGCTGGGATCTACCTATTGAACCCCTCAGTTTTGGATCATATTGAACTGAGACCCACTTCTATTGAGAAAGAGGTGTTTCCAAAGATTGCAGCAAACAAAAAGCTATATGCAATGGTTCTGCCTGGATTCTGGATGGACATTGGACAGCCAAGGGACTATATAACAGGTCTGAGACTCTACCTGGACTCACTCAGGAAGAAGACTTCTTCCAAGTTGGCCAGTGGCCCTCACATTTTGGGGAATGTGATTGTGCATGAGACAGCCAAAATTGGCGAGGGATGTCTCATTGGACCTGATGTTGCAATTGGTCCTGGCTGTACTATTGAGTCAGGTGTCAGGCTTTCAAGTTGCACTGTAATGAGAGGAGTTCGGATTAAGAAGCATGCTTGCATATCCAGCAGCATCATCGGGTGGCATTCAACTGTTGGTCAATGGGCTCGCGTGGAGAATATGACTATCCTTGGAGAAGATGTCCATGTATCTGATGAAGTTTACAGCAATGGTGGTGTGGTTTTGCCCCACAAGGAAATCAAAACAAGCATTCTGAATCCAGAGATAGTCATGTGA
Protein sequence

>Msa0480270

MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKDIGVTEVVLAINYQPEVMLNFLKDFEEKLDIKITCSQETEPLGTAGPLALARDKLIDGSSEPFFVLNSDVISEYPLKEMIEFHKSHGGEASIMVTKVDEPSKYGVVVMEETTGQVEKFVEKPKLFVGNKINAGIYLLNPSVLDHIELRPTSIEKEVFPKIAANKKLYAMVLPGFWMDIGQPRDYITGLRLYLDSLRKKTSSKLASGPHILGNVIVHETAKIGEGCLIGPDVAIGPGCTIESGVRLSSCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVSDEVYSNGGVVLPHKEIKTSILNPEIVM*