AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1282580


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1282580 MtrunA17_Chr8g0353791 100.000 188 0 0 1 188 1 188 1.66e-142 394
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1282580 AT3G12300.1 87.368 190 24 0 1 190 1 190 1.69e-130 364

Find 53 sgRNAs with CRISPR-Local

Find 408 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACATTTGAGATTCAAGTTT+TGG 0.209840 8_3:+23158833 Msa1282580:CDS
ATTAGTCCCATATGCTTTCT+TGG 0.233780 8_3:-23159257 None:intergenic
TCTAATGTACTGGAAATAAT+TGG 0.268445 8_3:+23158702 Msa1282580:CDS
ATACCCAAGGCTGTATAATA+TGG 0.289391 8_3:-23156414 None:intergenic
TGGTATAAAACTTCCATTCT+TGG 0.289803 8_3:+23158779 Msa1282580:CDS
CATCTTGTGGTCGCTTAATA+TGG 0.311001 8_3:-23158668 None:intergenic
GGAGCAAACCTTTGCAGATA+TGG 0.317310 8_3:+23156538 Msa1282580:intron
TAAAGTCAGCCAGGTTAAAC+TGG 0.353864 8_3:-23159234 None:intergenic
TGTGGAGACGCTACGAGTTC+AGG 0.369293 8_3:+23159282 Msa1282580:CDS
TTTCCATATTATACAGCCTT+GGG 0.401172 8_3:+23156411 Msa1282580:CDS
AAAGAATCAGCACTTAGTTT+AGG 0.410331 8_3:-23155148 None:intergenic
GACTTTACCAAGAAAGCATA+TGG 0.429193 8_3:+23159250 Msa1282580:CDS
TTCACAATCATAACCAAGAA+TGG 0.450408 8_3:-23158792 None:intergenic
AGTGTGGCAGCTGGGTCAGC+CGG 0.451970 8_3:-23158756 None:intergenic
AACTTACGATGATGAGCGTT+GGG 0.454005 8_3:-23155217 None:intergenic
CTTTCCATATTATACAGCCT+TGG 0.463889 8_3:+23156410 Msa1282580:CDS
TTTATACCAAGTGTGGCAGC+TGG 0.471135 8_3:-23158765 None:intergenic
CAAGTTGTACCTTCCAATGC+AGG 0.471690 8_3:+23159381 Msa1282580:CDS
TTCAAGAACACATTCCAGTC+TGG 0.472331 8_3:+23156383 Msa1282580:CDS
TTGCACTATGCCACTGAGAA+TGG 0.489210 8_3:+23159192 Msa1282580:CDS
AGACATACAATCTAATGTAC+TGG 0.495892 8_3:+23158692 Msa1282580:CDS
GATTGTATGTCTTCATCTTG+TGG 0.496368 8_3:-23158681 None:intergenic
CTTTCTTGGTAAAGTCAGCC+AGG 0.501342 8_3:-23159243 None:intergenic
ATTAACCTTAATTAGAGTGC+AGG 0.503861 8_3:+23159904 Msa1282580:intron
GCTGACCCAGCTGCCACACT+TGG 0.511732 8_3:+23158759 Msa1282580:CDS
GAGCAAACCTTTGCAGATAT+GGG 0.519182 8_3:+23156539 Msa1282580:CDS
TTCTCAAGCGACAGTTTGCA+TGG 0.520738 8_3:-23159306 None:intergenic
GTGTGGCAGCTGGGTCAGCC+GGG 0.525412 8_3:-23158755 None:intergenic
CAGACATCTCATACCTGCAT+TGG 0.527544 8_3:-23159394 None:intergenic
GGAAGGTACAACTTGAACTC+TGG 0.537228 8_3:-23159373 None:intergenic
AAACTTACGATGATGAGCGT+TGG 0.540100 8_3:-23155218 None:intergenic
CTTCTCTGATCGTCTCTACT+CGG 0.546100 8_3:+23159336 Msa1282580:CDS
GTCCACATACATTACGTGCC+CGG 0.551642 8_3:+23158737 Msa1282580:CDS
TATGCCACTGAGAATGGATG+AGG 0.552706 8_3:+23159198 Msa1282580:CDS
TCTTTGTCCCATATCTGCAA+AGG 0.557834 8_3:-23156546 None:intergenic
TGATCGTCTCTACTCGGAAG+AGG 0.559398 8_3:+23159342 Msa1282580:CDS
AGCATATGGGACTAATTATG+TGG 0.561284 8_3:+23159264 Msa1282580:CDS
CATCTCATACCTGCATTGGA+AGG 0.576069 8_3:-23159390 None:intergenic
ATGCAAACTGTCGCTTGAGA+AGG 0.579025 8_3:+23159308 Msa1282580:CDS
AGGTACAACTTGAACTCTGG+TGG 0.579778 8_3:-23159370 None:intergenic
GAATCAAATCCAGTTTAACC+TGG 0.582198 8_3:+23159225 Msa1282580:CDS
AGTGGCATAGTGCAAATGTA+CGG 0.583812 8_3:-23159184 None:intergenic
CACTGAGAATGGATGAGGGT+TGG 0.589041 8_3:+23159203 Msa1282580:CDS
TTGCAGATATGGGACAAAGA+AGG 0.596515 8_3:+23156549 Msa1282580:CDS
ATATGGAAAGAAATCCAGAC+TGG 0.597297 8_3:-23156397 None:intergenic
ACTTTACCAAGAAAGCATAT+GGG 0.601556 8_3:+23159251 Msa1282580:CDS
GAGAGACGAGACGAGAGGAG+AGG 0.609086 8_3:-23155174 None:intergenic
TTATACCAAGTGTGGCAGCT+GGG 0.613588 8_3:-23158764 None:intergenic
GGTACAACTTGAACTCTGGT+GGG 0.629720 8_3:-23159369 None:intergenic
CGCGAGAGAGACGAGACGAG+AGG 0.645004 8_3:-23155179 None:intergenic
AGCGTTGGGAAGAACAGCAA+CGG 0.665924 8_3:-23155203 None:intergenic
CAACCCTCATCCATTCTCAG+TGG 0.706213 8_3:-23159202 None:intergenic
ATGCCACTGAGAATGGATGA+GGG 0.727443 8_3:+23159199 Msa1282580:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTTAAATAATTTTTTA+AGG + chr8_3:23161368-23161387 Msa1282580:intron 0.0%
!!! ATTTTTAAATAATTTTTTAA+GGG + chr8_3:23161369-23161388 Msa1282580:intron 0.0%
!!! TCAATTTTTTTTATTATTGT+AGG + chr8_3:23156517-23156536 Msa1282580:intron 10.0%
!! AAAAAATCGTAAAAAAAATT+CGG - chr8_3:23157085-23157104 None:intergenic 10.0%
!!! TCATTTTTTTTTAGTTAAAA+AGG - chr8_3:23159803-23159822 None:intergenic 10.0%
!!! CACATATTTTAATTTTATTT+TGG + chr8_3:23160563-23160582 Msa1282580:intron 10.0%
!!! GTTTTTTCATATTTATAATA+GGG + chr8_3:23160586-23160605 Msa1282580:intron 10.0%
!! ATTATAACAACATAACATAA+TGG - chr8_3:23155946-23155965 None:intergenic 15.0%
!! AAAGTTTCATTAATGAATTA+TGG + chr8_3:23156205-23156224 Msa1282580:intron 15.0%
!! TAATCAAAGTAAAATGATTT+CGG - chr8_3:23156655-23156674 None:intergenic 15.0%
!! AAAAATCGTAAAAAAAATTC+GGG - chr8_3:23157084-23157103 None:intergenic 15.0%
!!! TTAAATTGAACCTAATATTT+TGG + chr8_3:23157901-23157920 Msa1282580:intron 15.0%
!! AAAAAAAAAAAAATCGTTCA+GGG - chr8_3:23160034-23160053 None:intergenic 15.0%
!! AAAAAAAAAAAAAATCGTTC+AGG - chr8_3:23160035-23160054 None:intergenic 15.0%
!!! GTATAAATTTTACTTTTCAA+GGG - chr8_3:23160284-23160303 None:intergenic 15.0%
!!! AGTATAAATTTTACTTTTCA+AGG - chr8_3:23160285-23160304 None:intergenic 15.0%
!! AGGTCATATTTAATTATTAA+GGG - chr8_3:23160344-23160363 None:intergenic 15.0%
!! TAGGTCATATTTAATTATTA+AGG - chr8_3:23160345-23160364 None:intergenic 15.0%
!!! GGTTTTTTCATATTTATAAT+AGG + chr8_3:23160585-23160604 Msa1282580:intron 15.0%
!!! TCTAATATATTTTGAAAAAG+AGG + chr8_3:23160849-23160868 Msa1282580:intron 15.0%
!!! CTAATATATTTTGAAAAAGA+GGG + chr8_3:23160850-23160869 Msa1282580:intron 15.0%
!!! TAATATATTTTGAAAAAGAG+GGG + chr8_3:23160851-23160870 Msa1282580:intron 15.0%
!!! ATGTATATTTTAACATAAGA+TGG + chr8_3:23160880-23160899 Msa1282580:intron 15.0%
!!! TGTATATTTTAACATAAGAT+GGG + chr8_3:23160881-23160900 Msa1282580:intron 15.0%
!! AAAACTAGTTATGACAATTA+GGG - chr8_3:23155305-23155324 None:intergenic 20.0%
!! AAACCAATAATCACAATTTA+GGG - chr8_3:23155801-23155820 None:intergenic 20.0%
!! AAAACCAATAATCACAATTT+AGG - chr8_3:23155802-23155821 None:intergenic 20.0%
!!! AATGAATTATGGTTTCTTTT+TGG + chr8_3:23156216-23156235 Msa1282580:intron 20.0%
!!! ATGAATTATGGTTTCTTTTT+GGG + chr8_3:23156217-23156236 Msa1282580:intron 20.0%
!!! ACAAAAAAAATGACATGTTT+TGG - chr8_3:23156309-23156328 None:intergenic 20.0%
!!! TTGATTATTTTATTCTCGTT+TGG + chr8_3:23156668-23156687 Msa1282580:intron 20.0%
!!! TGATTATTTTATTCTCGTTT+GGG + chr8_3:23156669-23156688 Msa1282580:intron 20.0%
!! AAACAAAAAAAAATAAGCCA+GGG - chr8_3:23156871-23156890 None:intergenic 20.0%
!! AAAACAAAAAAAAATAAGCC+AGG - chr8_3:23156872-23156891 None:intergenic 20.0%
!!! CTGAAAAAACTGAAATTTTT+AGG - chr8_3:23156953-23156972 None:intergenic 20.0%
!! TAAGGAAAAAAAAATAAGTC+AGG + chr8_3:23157225-23157244 Msa1282580:intron 20.0%
!! AAGGAAAAAAAAATAAGTCA+GGG + chr8_3:23157226-23157245 Msa1282580:intron 20.0%
!! ACTTAAGTTAATTGCATAAA+GGG - chr8_3:23157625-23157644 None:intergenic 20.0%
!! TACTTAAGTTAATTGCATAA+AGG - chr8_3:23157626-23157645 None:intergenic 20.0%
!! ATACTAAATGGAAATTTATG+TGG + chr8_3:23157743-23157762 Msa1282580:intron 20.0%
!! ATATTAGGTTCAATTTAATC+CGG - chr8_3:23157899-23157918 None:intergenic 20.0%
!!! ACCTAATATTTTGGTTTAAA+AGG + chr8_3:23157910-23157929 Msa1282580:intron 20.0%
!!! CCTAATATTTTGGTTTAAAA+GGG + chr8_3:23157911-23157930 Msa1282580:intron 20.0%
!! CTTTCTTCCATTTAATTATA+TGG + chr8_3:23158987-23159006 Msa1282580:intron 20.0%
!! AAGTTCTCCATATAATTAAA+TGG - chr8_3:23158997-23159016 None:intergenic 20.0%
!! AGAAATAATGAAAATGTCAT+TGG + chr8_3:23159494-23159513 Msa1282580:intron 20.0%
!!! ATTTTGATATCATTGGTATT+TGG - chr8_3:23159942-23159961 None:intergenic 20.0%
!!! GAATAGAATTTTGATATCAT+TGG - chr8_3:23159949-23159968 None:intergenic 20.0%
!! ATATCAAAATTCTATTCCTT+AGG + chr8_3:23159952-23159971 Msa1282580:intron 20.0%
!! AATATTGAAAATATGAGTGA+CGG - chr8_3:23160123-23160142 None:intergenic 20.0%
!! ATATTTAATTATTAAGGGAG+GGG - chr8_3:23160339-23160358 None:intergenic 20.0%
!! CATATTTAATTATTAAGGGA+GGG - chr8_3:23160340-23160359 None:intergenic 20.0%
!! TCATATTTAATTATTAAGGG+AGG - chr8_3:23160341-23160360 None:intergenic 20.0%
!! GTTAAAATAGATTAAAGTGT+AGG - chr8_3:23160364-23160383 None:intergenic 20.0%
! CAAAACTAGTTATGACAATT+AGG - chr8_3:23155306-23155325 None:intergenic 25.0%
! TGCTTGTTTATGATTTAAGA+AGG + chr8_3:23155453-23155472 Msa1282580:intron 25.0%
! GCTTGTTTATGATTTAAGAA+GGG + chr8_3:23155454-23155473 Msa1282580:intron 25.0%
!!! CTTGTTTATTTTTCGATGTA+TGG + chr8_3:23155522-23155541 Msa1282580:intron 25.0%
!! ATGATTTCTCGTAGAATTTT+AGG + chr8_3:23155547-23155566 Msa1282580:intron 25.0%
!! TGATTTCTCGTAGAATTTTA+GGG + chr8_3:23155548-23155567 Msa1282580:intron 25.0%
! AATCCCTAAATTGTGATTAT+TGG + chr8_3:23155795-23155814 Msa1282580:intron 25.0%
!!! GATTATTGGTTTTGTATTGA+TGG + chr8_3:23155809-23155828 Msa1282580:intron 25.0%
!! TAATTAATGCTCAAGTTGTT+AGG + chr8_3:23155851-23155870 Msa1282580:intron 25.0%
!! AATTAATGCTCAAGTTGTTA+GGG + chr8_3:23155852-23155871 Msa1282580:intron 25.0%
! AATAGTGTGATAAAAGAACT+TGG + chr8_3:23156076-23156095 Msa1282580:intron 25.0%
!!! TCATATGTTTGTTGTGATTA+AGG + chr8_3:23156471-23156490 Msa1282580:intron 25.0%
!! TCAAGTGATTAACTTTTACA+GGG - chr8_3:23157325-23157344 None:intergenic 25.0%
!! TTCAAGTGATTAACTTTTAC+AGG - chr8_3:23157324-23157343 None:intergenic 25.0%
! AACAAAAAAAAATAAGCCAG+GGG - chr8_3:23156870-23156889 None:intergenic 25.0%
! AAAAAATTAGGGAAAAAGCT+GGG - chr8_3:23156915-23156934 None:intergenic 25.0%
! AAAAAAATTAGGGAAAAAGC+TGG - chr8_3:23156916-23156935 None:intergenic 25.0%
! AAAAAATTCGGGAAAAAACT+GGG - chr8_3:23157073-23157092 None:intergenic 25.0%
! AAAAAAATTCGGGAAAAAAC+TGG - chr8_3:23157074-23157093 None:intergenic 25.0%
! AGGAAAAAAAAATAAGTCAG+GGG + chr8_3:23157227-23157246 Msa1282580:intron 25.0%
!! TTCAAGTGATTAACTTTTAC+AGG + chr8_3:23157324-23157343 Msa1282580:intron 25.0%
!! TCAAGTGATTAACTTTTACA+GGG + chr8_3:23157325-23157344 Msa1282580:intron 25.0%
! TACTGAAACAGTAATATAGA+TGG - chr8_3:23157686-23157705 None:intergenic 25.0%
! AGTTGGAATAAAACTTATAG+AGG + chr8_3:23157815-23157834 Msa1282580:intron 25.0%
!! CCCTTTTAAACCAAAATATT+AGG - chr8_3:23157914-23157933 None:intergenic 25.0%
! AAGAAAGACAAGAAAACTTA+TGG + chr8_3:23157940-23157959 Msa1282580:intron 25.0%
!! TTTGAAAAGTTAGTTCTTGA+TGG + chr8_3:23157999-23158018 Msa1282580:intron 25.0%
! CTACTAGAAAGTCAATTAAA+TGG - chr8_3:23158046-23158065 None:intergenic 25.0%
!! CATTTAATTGACTTTCTAGT+AGG + chr8_3:23158044-23158063 Msa1282580:intron 25.0%
! GTTCTATCAAAAACCATATT+TGG - chr8_3:23158399-23158418 None:intergenic 25.0%
! CAAAAGAATAAACCAGTTAA+TGG - chr8_3:23158501-23158520 None:intergenic 25.0%
!!! TATTCTTTTGTTTCGTTTCT+TGG + chr8_3:23158511-23158530 Msa1282580:intron 25.0%
!! TTAAACTTACGATTTTGTCT+TGG + chr8_3:23158620-23158639 Msa1282580:intron 25.0%
!! TAAACTTACGATTTTGTCTT+GGG + chr8_3:23158621-23158640 Msa1282580:intron 25.0%
! TCTAATGTACTGGAAATAAT+TGG + chr8_3:23158702-23158721 Msa1282580:CDS 25.0%
! AAATTAAACATCTGCAAGAT+TGG - chr8_3:23158943-23158962 None:intergenic 25.0%
! AATAATGAAAATGTCATTGG+AGG + chr8_3:23159497-23159516 Msa1282580:intron 25.0%
!!! AACTTTGTTTTGATTGTTTG+CGG - chr8_3:23160181-23160200 None:intergenic 25.0%
! TGTAATTCAAGCATTTCATA+GGG - chr8_3:23160224-23160243 None:intergenic 25.0%
!! TGTATATTTTCACATAAGAG+GGG - chr8_3:23160254-23160273 None:intergenic 25.0%
!! GTGTATATTTTCACATAAGA+GGG - chr8_3:23160255-23160274 None:intergenic 25.0%
!! AGTGTATATTTTCACATAAG+AGG - chr8_3:23160256-23160275 None:intergenic 25.0%
!!! AAATTTTACTTTTCAAGGGA+GGG - chr8_3:23160280-23160299 None:intergenic 25.0%
!!! TAAATTTTACTTTTCAAGGG+AGG - chr8_3:23160281-23160300 None:intergenic 25.0%
! TATTTAATTATTAAGGGAGG+GGG - chr8_3:23160338-23160357 None:intergenic 25.0%
! TTATGAAAGTCGATAAAGAA+TGG - chr8_3:23160538-23160557 None:intergenic 25.0%
! TTTGAAGACAAATAGTATTG+TGG - chr8_3:23160693-23160712 None:intergenic 25.0%
!!! CGTAGATTTTAACATAAGAA+TGG + chr8_3:23160778-23160797 Msa1282580:intron 25.0%
!!! ATTTTAACATAAGAATGGAG+TGG + chr8_3:23160783-23160802 Msa1282580:intron 25.0%
!! TGTAATTCAAGTTTCTCTTA+AGG + chr8_3:23160808-23160827 Msa1282580:intron 25.0%
!! GTAATTCAAGTTTCTCTTAA+GGG + chr8_3:23160809-23160828 Msa1282580:intron 25.0%
! AATTTACTCAACAAAGTTTG+AGG + chr8_3:23160945-23160964 Msa1282580:intron 25.0%
! GACTAATATCATAATATGTG+AGG - chr8_3:23161134-23161153 None:intergenic 25.0%
! TAGTCTTTACTGAATTGTTA+AGG + chr8_3:23161149-23161168 Msa1282580:intron 25.0%
! AGTCTTTACTGAATTGTTAA+GGG + chr8_3:23161150-23161169 Msa1282580:intron 25.0%
! ATACTATCATCTCATATTAG+AGG + chr8_3:23161227-23161246 Msa1282580:intron 25.0%
! TACTATCATCTCATATTAGA+GGG + chr8_3:23161228-23161247 Msa1282580:intron 25.0%
!! TCAATGTTTTCTGATAGATA+AGG + chr8_3:23161269-23161288 Msa1282580:intron 25.0%
AAAGAATCAGCACTTAGTTT+AGG - chr8_3:23155151-23155170 None:intergenic 30.0%
AGCAATGCCTACATAATAAA+CGG - chr8_3:23155437-23155456 None:intergenic 30.0%
! GATTTCTCGTAGAATTTTAG+GGG + chr8_3:23155549-23155568 Msa1282580:intron 30.0%
AAAAACAGAAACACAACGAT+GGG - chr8_3:23155724-23155743 None:intergenic 30.0%
AAAAAACAGAAACACAACGA+TGG - chr8_3:23155725-23155744 None:intergenic 30.0%
!!! TATTGGTTTTGTATTGATGG+AGG + chr8_3:23155812-23155831 Msa1282580:intron 30.0%
!!! ATTGGTTTTGTATTGATGGA+GGG + chr8_3:23155813-23155832 Msa1282580:intron 30.0%
AATGGCACTACAGAATTTAA+TGG - chr8_3:23155928-23155947 None:intergenic 30.0%
TCAAAAGAGAAGTTATATCG+TGG - chr8_3:23156044-23156063 None:intergenic 30.0%
! CTTCTCTTTTGATAAAACTC+TGG + chr8_3:23156052-23156071 Msa1282580:intron 30.0%
AAAGAATAGTGTGGCAAAAT+TGG + chr8_3:23156113-23156132 Msa1282580:intron 30.0%
AAGAATAGTGTGGCAAAATT+GGG + chr8_3:23156114-23156133 Msa1282580:intron 30.0%
TCTTTAGATGCACTATATGA+TGG + chr8_3:23156173-23156192 Msa1282580:intron 30.0%
!!! GTTTTGGAAATTTAGTAGTG+AGG - chr8_3:23156293-23156312 None:intergenic 30.0%
TTTCCATATTATACAGCCTT+GGG + chr8_3:23156411-23156430 Msa1282580:CDS 30.0%
! TTTTTCGTCCCTGTAATTAT+AGG + chr8_3:23156701-23156720 Msa1282580:intron 30.0%
TCAAATGGCCTATAATTACA+GGG - chr8_3:23157385-23157404 None:intergenic 30.0%
TTCAAATGGCCTATAATTAC+AGG - chr8_3:23157384-23157403 None:intergenic 30.0%
AAAAATTAGGGAAAAAGCTG+GGG - chr8_3:23156914-23156933 None:intergenic 30.0%
TTCAAATGGCCTATAATTAC+AGG + chr8_3:23157384-23157403 Msa1282580:intron 30.0%
TCAAATGGCCTATAATTACA+GGG + chr8_3:23157385-23157404 Msa1282580:intron 30.0%
! AGAAGCACAACTAAACAAAA+GGG - chr8_3:23157428-23157447 None:intergenic 30.0%
TTGGTGTAGTTCATACTAAA+TGG + chr8_3:23157731-23157750 Msa1282580:intron 30.0%
TGGAAATTTATGTGGATGAA+TGG + chr8_3:23157751-23157770 Msa1282580:intron 30.0%
GGAAAAGAGCAACTTATATT+AGG + chr8_3:23157772-23157791 Msa1282580:intron 30.0%
AGAGCAACTTATATTAGGAA+TGG + chr8_3:23157777-23157796 Msa1282580:intron 30.0%
GGATACATTTATGAGAAAGT+TGG + chr8_3:23157798-23157817 Msa1282580:intron 30.0%
!! GAAACTTGTTATATGTCATG+TGG + chr8_3:23157849-23157868 Msa1282580:intron 30.0%
ACTCCAATGACAAAATAAAC+CGG + chr8_3:23157877-23157896 Msa1282580:intron 30.0%
!!! AATCCGGTTTATTTTGTCAT+TGG - chr8_3:23157883-23157902 None:intergenic 30.0%
TCACAATGAGTTATTCTTAG+TGG - chr8_3:23157971-23157990 None:intergenic 30.0%
! AATTGACTTTCTAGTAGGAT+AGG + chr8_3:23158049-23158068 Msa1282580:intron 30.0%
AAAGAAATATCCTAGAGACA+AGG - chr8_3:23158127-23158146 None:intergenic 30.0%
GACTACATTAGAGAAATGAT+AGG + chr8_3:23158195-23158214 Msa1282580:intron 30.0%
! TCTACCAACTTTTCTACTAT+AGG - chr8_3:23158274-23158293 None:intergenic 30.0%
!! AGTTGGTAGAAAATAGACAT+TGG + chr8_3:23158284-23158303 Msa1282580:intron 30.0%
CTTTCTAATGGTTTCTCTAA+TGG - chr8_3:23158352-23158371 None:intergenic 30.0%
CATTAGAGAAACCATTAGAA+AGG + chr8_3:23158350-23158369 Msa1282580:intron 30.0%
!! AACCATTAGAAAGGTTTTAG+AGG + chr8_3:23158359-23158378 Msa1282580:intron 30.0%
TTTGATCTGATTCCATTAAC+TGG + chr8_3:23158486-23158505 Msa1282580:intron 30.0%
! AAACTTACGATTTTGTCTTG+GGG + chr8_3:23158622-23158641 Msa1282580:intron 30.0%
! ACTCTTTTTATAGTTGTGGA+TGG + chr8_3:23158645-23158664 Msa1282580:intron 30.0%
AGACATACAATCTAATGTAC+TGG + chr8_3:23158692-23158711 Msa1282580:CDS 30.0%
TGGTATAAAACTTCCATTCT+TGG + chr8_3:23158779-23158798 Msa1282580:CDS 30.0%
TTCACAATCATAACCAAGAA+TGG - chr8_3:23158795-23158814 None:intergenic 30.0%
!! CACATTTGAGATTCAAGTTT+TGG + chr8_3:23158833-23158852 Msa1282580:CDS 30.0%
! ACTTTACCAAGAAAGCATAT+GGG + chr8_3:23159251-23159270 Msa1282580:CDS 30.0%
!!! AGAATACAGTTTTTAGTGCA+GGG - chr8_3:23159577-23159596 None:intergenic 30.0%
TTATACAACTGCTCTATTGT+AGG + chr8_3:23159619-23159638 Msa1282580:intron 30.0%
TATACAACTGCTCTATTGTA+GGG + chr8_3:23159620-23159639 Msa1282580:intron 30.0%
TATTGTCTTACCAAAGAAAG+AGG + chr8_3:23159698-23159717 Msa1282580:intron 30.0%
ATTGTCTTACCAAAGAAAGA+GGG + chr8_3:23159699-23159718 Msa1282580:intron 30.0%
CATGTTACAACACTATAATC+AGG - chr8_3:23159763-23159782 None:intergenic 30.0%
ATTAACCTTAATTAGAGTGC+AGG + chr8_3:23159904-23159923 Msa1282580:intron 30.0%
! TTCTATTCCTTAGGAAGTTT+TGG + chr8_3:23159961-23159980 Msa1282580:intron 30.0%
AAGATATCCAAAACTTCCTA+AGG - chr8_3:23159971-23159990 None:intergenic 30.0%
!!! ACTTTGTTTTGATTGTTTGC+GGG - chr8_3:23160180-23160199 None:intergenic 30.0%
GTAATTCAAGCATTTCATAG+GGG - chr8_3:23160223-23160242 None:intergenic 30.0%
GTGTAATTCAAGCATTTCAT+AGG - chr8_3:23160225-23160244 None:intergenic 30.0%
!! TATATTTTGAAAAAGAGGGG+AGG + chr8_3:23160854-23160873 Msa1282580:intron 30.0%
!! ATATTTTGAAAAAGAGGGGA+GGG + chr8_3:23160855-23160874 Msa1282580:intron 30.0%
TGTAATTCAAGCATCTTTGT+GGG + chr8_3:23160911-23160930 Msa1282580:intron 30.0%
CAAATTATACATTCCGTGTT+GGG - chr8_3:23161004-23161023 None:intergenic 30.0%
! TGAGACTTTTTACATATGGA+TGG - chr8_3:23161189-23161208 None:intergenic 30.0%
! TGCTTGAGACTTTTTACATA+TGG - chr8_3:23161193-23161212 None:intergenic 30.0%
TATGTAAAAAGTCTCAAGCA+CGG + chr8_3:23161193-23161212 Msa1282580:intron 30.0%
! TCATATTAGAGGGTATGATA+TGG + chr8_3:23161238-23161257 Msa1282580:intron 30.0%
AAATGTTCTGTAGCACATGT+TGG + chr8_3:23155346-23155365 Msa1282580:intron 35.0%
AGAATAGTGCTATAGCAGTA+TGG - chr8_3:23155392-23155411 None:intergenic 35.0%
CAATACGCCGTTTATTATGT+AGG + chr8_3:23155427-23155446 Msa1282580:intron 35.0%
AACATGAGAAAAACAACCAC+AGG - chr8_3:23155491-23155510 None:intergenic 35.0%
CAGAGAAATACACAAGGAAA+GGG - chr8_3:23155699-23155718 None:intergenic 35.0%
ACAGAGAAATACACAAGGAA+AGG - chr8_3:23155700-23155719 None:intergenic 35.0%
CTACAGAATTTAATGGCACA+AGG - chr8_3:23155921-23155940 None:intergenic 35.0%
CACTATTACTATAAGCTGGA+TGG + chr8_3:23155991-23156010 Msa1282580:intron 35.0%
CTTGTCACTAAAGAATAGTG+TGG + chr8_3:23156104-23156123 Msa1282580:intron 35.0%
!!! TCTTTTTGGGTTGTGTTAAC+CGG + chr8_3:23156230-23156249 Msa1282580:intron 35.0%
ATATGGAAAGAAATCCAGAC+TGG - chr8_3:23156400-23156419 None:intergenic 35.0%
CTTTCCATATTATACAGCCT+TGG + chr8_3:23156410-23156429 Msa1282580:CDS 35.0%
ATACCCAAGGCTGTATAATA+TGG - chr8_3:23156417-23156436 None:intergenic 35.0%
TTGTTAGCAGTGACATTAGA+TGG + chr8_3:23156583-23156602 Msa1282580:intron 35.0%
! AACTTTTACAGGGACGAAAT+GGG - chr8_3:23157335-23157354 None:intergenic 35.0%
! TAACTTTTACAGGGACGAAA+TGG - chr8_3:23157334-23157353 None:intergenic 35.0%
!!! ATTTTGGTAATTTGCTGACG+TGG - chr8_3:23157272-23157291 None:intergenic 35.0%
ACGTCAGCAAATTACCAAAA+TGG + chr8_3:23156824-23156843 Msa1282580:intron 35.0%
AGCAAATTACCAAAATGGCA+TGG + chr8_3:23156829-23156848 Msa1282580:intron 35.0%
GCAAATTACCAAAATGGCAT+GGG + chr8_3:23156830-23156849 Msa1282580:intron 35.0%
! GCTGGGGAAAAAATTTTTGA+AGG - chr8_3:23156898-23156917 None:intergenic 35.0%
GCAAATTACCAAAATGGCAT+GGG - chr8_3:23156830-23156849 None:intergenic 35.0%
AGCAAATTACCAAAATGGCA+TGG - chr8_3:23156829-23156848 None:intergenic 35.0%
ACGTCAGCAAATTACCAAAA+TGG - chr8_3:23156824-23156843 None:intergenic 35.0%
!!! ATTTTGGTAATTTGCTGACG+TGG + chr8_3:23157272-23157291 Msa1282580:intron 35.0%
! TAACTTTTACAGGGACGAAA+TGG + chr8_3:23157334-23157353 Msa1282580:intron 35.0%
! AACTTTTACAGGGACGAAAT+GGG + chr8_3:23157335-23157354 Msa1282580:intron 35.0%
! CTTTTCGTCCCTGTAATTAT+AGG - chr8_3:23157396-23157415 None:intergenic 35.0%
! CAGAAGCACAACTAAACAAA+AGG - chr8_3:23157429-23157448 None:intergenic 35.0%
! GTTTAGTTGTGCTTCTGAAA+TGG + chr8_3:23157432-23157451 Msa1282580:intron 35.0%
AATATGTTGAAGAGTGACTG+AGG + chr8_3:23157517-23157536 Msa1282580:intron 35.0%
ATATGTTGAAGAGTGACTGA+GGG + chr8_3:23157518-23157537 Msa1282580:intron 35.0%
CAAAGCACAACATTTCTCAA+CGG - chr8_3:23157659-23157678 None:intergenic 35.0%
ATGGATCAACTGATGCAATA+GGG - chr8_3:23158027-23158046 None:intergenic 35.0%
AATGGATCAACTGATGCAAT+AGG - chr8_3:23158028-23158047 None:intergenic 35.0%
AGTTTGTGTGATATGTGTAC+TGG + chr8_3:23158161-23158180 Msa1282580:intron 35.0%
GTTTGTGTGATATGTGTACT+GGG + chr8_3:23158162-23158181 Msa1282580:intron 35.0%
TGATTCCATTAGAAAGAGAG+TGG + chr8_3:23158240-23158259 Msa1282580:intron 35.0%
GATTCCATTAGAAAGAGAGT+GGG + chr8_3:23158241-23158260 Msa1282580:intron 35.0%
ATTCCATTAGAAAGAGAGTG+GGG + chr8_3:23158242-23158261 Msa1282580:intron 35.0%
AGCACCTATAGTAGAAAAGT+TGG + chr8_3:23158267-23158286 Msa1282580:intron 35.0%
TGGTAGAAAATAGACATTGG+TGG + chr8_3:23158287-23158306 Msa1282580:intron 35.0%
AGTCAAGTTAAAAGAGGTAG+AGG + chr8_3:23158312-23158331 Msa1282580:intron 35.0%
GTTTCTCTAATGGCTTTCTT+AGG - chr8_3:23158342-23158361 None:intergenic 35.0%
!! GACCTCTAAAACCTTTCTAA+TGG - chr8_3:23158364-23158383 None:intergenic 35.0%
! CAATGAGTTGGATCCAAATA+TGG + chr8_3:23158383-23158402 Msa1282580:intron 35.0%
GATTGTATGTCTTCATCTTG+TGG - chr8_3:23158684-23158703 None:intergenic 35.0%
!! TGGAAGTTTTATACCAAGTG+TGG - chr8_3:23158775-23158794 None:intergenic 35.0%
CCTATAAGACACACAAACAT+GGG - chr8_3:23158916-23158935 None:intergenic 35.0%
TCCTATAAGACACACAAACA+TGG - chr8_3:23158917-23158936 None:intergenic 35.0%
GAATCAAATCCAGTTTAACC+TGG + chr8_3:23159225-23159244 Msa1282580:CDS 35.0%
! GACTTTACCAAGAAAGCATA+TGG + chr8_3:23159250-23159269 Msa1282580:CDS 35.0%
ATTAGTCCCATATGCTTTCT+TGG - chr8_3:23159260-23159279 None:intergenic 35.0%
AGCATATGGGACTAATTATG+TGG + chr8_3:23159264-23159283 Msa1282580:CDS 35.0%
TTTCATCTCAATTGCATGTC+AGG + chr8_3:23159446-23159465 Msa1282580:intron 35.0%
TCTGCATGATGAACAATACA+AGG - chr8_3:23159477-23159496 None:intergenic 35.0%
ATGAAAATGTCATTGGAGGA+TGG + chr8_3:23159501-23159520 Msa1282580:intron 35.0%
!!! GAGAATACAGTTTTTAGTGC+AGG - chr8_3:23159578-23159597 None:intergenic 35.0%
ACATATCAACCCTCTTTCTT+TGG - chr8_3:23159711-23159730 None:intergenic 35.0%
TTTCTTGTCAGGTAAGTGAA+TGG - chr8_3:23159831-23159850 None:intergenic 35.0%
! TTGTGTCACTATTTCTTGTC+AGG - chr8_3:23159842-23159861 None:intergenic 35.0%
TTGTACCTGCACTCTAATTA+AGG - chr8_3:23159912-23159931 None:intergenic 35.0%
!!! ATTTTGAAGCTGTGAAGATC+TGG + chr8_3:23159998-23160017 Msa1282580:intron 35.0%
! ATTCAAGTTTCTCTTAAGGG+AGG + chr8_3:23160812-23160831 Msa1282580:intron 35.0%
! TTCAAGTTTCTCTTAAGGGA+GGG + chr8_3:23160813-23160832 Msa1282580:intron 35.0%
GTGTAATTCAAGCATCTTTG+TGG + chr8_3:23160910-23160929 Msa1282580:intron 35.0%
GTAATTCAAGCATCTTTGTG+GGG + chr8_3:23160912-23160931 Msa1282580:intron 35.0%
TCAACAAAGTTTGAGGAACA+TGG + chr8_3:23160952-23160971 Msa1282580:intron 35.0%
TATAACATGAACTGCCATTC+TGG + chr8_3:23160976-23160995 Msa1282580:intron 35.0%
GCAAATTATACATTCCGTGT+TGG - chr8_3:23161005-23161024 None:intergenic 35.0%
!! AATTTGCTGCTCTTTAGTTG+TGG + chr8_3:23161018-23161037 Msa1282580:intron 35.0%
TGGTATCAATGTCTCAACTA+GGG - chr8_3:23161097-23161116 None:intergenic 35.0%
TTGAGACATTGATACCACAA+AGG + chr8_3:23161100-23161119 Msa1282580:intron 35.0%
TGAGACATTGATACCACAAA+GGG + chr8_3:23161101-23161120 Msa1282580:intron 35.0%
AACTTACGATGATGAGCGTT+GGG - chr8_3:23155220-23155239 None:intergenic 40.0%
AAACTTACGATGATGAGCGT+TGG - chr8_3:23155221-23155240 None:intergenic 40.0%
AAAAACAACCACAGGCACAA+AGG - chr8_3:23155483-23155502 None:intergenic 40.0%
! GACTTATGATGGTGAGAAGA+GGG - chr8_3:23155671-23155690 None:intergenic 40.0%
! AGACTTATGATGGTGAGAAG+AGG - chr8_3:23155672-23155691 None:intergenic 40.0%
AAAGGGTTGGAGACTTATGA+TGG - chr8_3:23155682-23155701 None:intergenic 40.0%
GAAATACACAAGGAAAGGGT+TGG - chr8_3:23155695-23155714 None:intergenic 40.0%
CTAGCAATAGAGCATACATG+AGG - chr8_3:23155879-23155898 None:intergenic 40.0%
GCAGCACTATTACTATAAGC+TGG + chr8_3:23155987-23156006 Msa1282580:intron 40.0%
TTCAAGAACACATTCCAGTC+TGG + chr8_3:23156383-23156402 Msa1282580:CDS 40.0%
GAGCAAACCTTTGCAGATAT+GGG + chr8_3:23156539-23156558 Msa1282580:CDS 40.0%
TCTTTGTCCCATATCTGCAA+AGG - chr8_3:23156549-23156568 None:intergenic 40.0%
TTGCAGATATGGGACAAAGA+AGG + chr8_3:23156549-23156568 Msa1282580:CDS 40.0%
CTCAGGGACGAAAATTCAAA+TGG - chr8_3:23157370-23157389 None:intergenic 40.0%
TGACGTGGCAGTGATTAAAA+GGG - chr8_3:23157287-23157306 None:intergenic 40.0%
TGACGTGGCAGTGATTAAAA+GGG + chr8_3:23157287-23157306 Msa1282580:intron 40.0%
CTCAGGGACGAAAATTCAAA+TGG + chr8_3:23157370-23157389 Msa1282580:intron 40.0%
!! GTTGTGCTTCTGAAATGGTT+AGG + chr8_3:23157437-23157456 Msa1282580:intron 40.0%
AATGGACAGCACAACACATA+AGG - chr8_3:23157469-23157488 None:intergenic 40.0%
TATGTGTTGTGCTGTCCATT+TGG + chr8_3:23157469-23157488 Msa1282580:intron 40.0%
CCTTTCATAACATGGCCAAA+TGG - chr8_3:23157487-23157506 None:intergenic 40.0%
CCATTTGGCCATGTTATGAA+AGG + chr8_3:23157484-23157503 Msa1282580:intron 40.0%
CACATCAGCCTTTCATAACA+TGG - chr8_3:23157495-23157514 None:intergenic 40.0%
AGTGACTGAGGGATGAAATA+TGG + chr8_3:23157529-23157548 Msa1282580:intron 40.0%
CTCTTTCGCAACACAAATGA+GGG - chr8_3:23157563-23157582 None:intergenic 40.0%
TCTCTTTCGCAACACAAATG+AGG - chr8_3:23157564-23157583 None:intergenic 40.0%
TATGAACTACACCAAGAGCA+TGG - chr8_3:23157726-23157745 None:intergenic 40.0%
! GACACATTTTCCTTGTCTCT+AGG + chr8_3:23158114-23158133 Msa1282580:intron 40.0%
TTCCATTAGAAAGAGAGTGG+GGG + chr8_3:23158243-23158262 Msa1282580:intron 40.0%
GTGGAGAGTCAAGTTAAAAG+AGG + chr8_3:23158306-23158325 Msa1282580:intron 40.0%
!!! GGTTTTAGAGGTCAATGAGT+TGG + chr8_3:23158371-23158390 Msa1282580:intron 40.0%
! GGGGACTCTTTTTATAGTTG+TGG + chr8_3:23158641-23158660 Msa1282580:intron 40.0%
CATCTTGTGGTCGCTTAATA+TGG - chr8_3:23158671-23158690 None:intergenic 40.0%
CCCATGTTTGTGTGTCTTAT+AGG + chr8_3:23158913-23158932 Msa1282580:intron 40.0%
AGTGGCATAGTGCAAATGTA+CGG - chr8_3:23159187-23159206 None:intergenic 40.0%
TAAAGTCAGCCAGGTTAAAC+TGG - chr8_3:23159237-23159256 None:intergenic 40.0%
CATAACATTCAACCATCTCC+TGG - chr8_3:23159535-23159554 None:intergenic 40.0%
TGTTATGTGTAGTTGTGCGT+CGG + chr8_3:23159548-23159567 Msa1282580:intron 40.0%
GGAATCAGAAACATAGTCTC+TGG - chr8_3:23159742-23159761 None:intergenic 40.0%
TTCAAGCATTTCATAGGGGA+GGG - chr8_3:23160219-23160238 None:intergenic 40.0%
ATTCAAGCATTTCATAGGGG+AGG - chr8_3:23160220-23160239 None:intergenic 40.0%
! ATTTTCACATAAGAGGGGAG+AGG - chr8_3:23160249-23160268 None:intergenic 40.0%
GCAATTCAAGCATCTCAAAG+GGG - chr8_3:23160313-23160332 None:intergenic 40.0%
CGCAATTCAAGCATCTCAAA+GGG - chr8_3:23160314-23160333 None:intergenic 40.0%
TCGCAATTCAAGCATCTCAA+AGG - chr8_3:23160315-23160334 None:intergenic 40.0%
TCAAGTTTCTCTTAAGGGAG+GGG + chr8_3:23160814-23160833 Msa1282580:intron 40.0%
TGCTCTTTAGTTGTGGTGAA+AGG + chr8_3:23161025-23161044 Msa1282580:intron 40.0%
GGTATCAATGTCTCAACTAG+GGG - chr8_3:23161096-23161115 None:intergenic 40.0%
GTGGTATCAATGTCTCAACT+AGG - chr8_3:23161098-23161117 None:intergenic 40.0%
ACATTGATACCACAAAGGGT+CGG + chr8_3:23161105-23161124 Msa1282580:intron 40.0%
GCGATTCACAGATAGAGAGA+GGG - chr8_3:23155276-23155295 None:intergenic 45.0%
TGCGATTCACAGATAGAGAG+AGG - chr8_3:23155277-23155296 None:intergenic 45.0%
! GCACATGTTGGAAGCTTGTT+CGG + chr8_3:23155358-23155377 Msa1282580:intron 45.0%
ATGCAACGGACAAAGCTGTT+TGG - chr8_3:23155634-23155653 None:intergenic 45.0%
TCTCAGAGCAACAGATGCAA+CGG - chr8_3:23155648-23155667 None:intergenic 45.0%
TGGGCACAGAGAAATACACA+AGG - chr8_3:23155705-23155724 None:intergenic 45.0%
! TCGAGAGCACAATGGGTTTA+GGG - chr8_3:23155776-23155795 None:intergenic 45.0%
! TTCGAGAGCACAATGGGTTT+AGG - chr8_3:23155777-23155796 None:intergenic 45.0%
! TAGGGATTCGAGAGCACAAT+GGG - chr8_3:23155783-23155802 None:intergenic 45.0%
! TTAGGGATTCGAGAGCACAA+TGG - chr8_3:23155784-23155803 None:intergenic 45.0%
ATACAGCCTTGGGTATGATG+TGG + chr8_3:23156421-23156440 Msa1282580:intron 45.0%
GGAGCAAACCTTTGCAGATA+TGG + chr8_3:23156538-23156557 Msa1282580:intron 45.0%
! TGGGAGGATTAGTAAGCTCA+GGG - chr8_3:23157354-23157373 None:intergenic 45.0%
! ATGGGAGGATTAGTAAGCTC+AGG - chr8_3:23157353-23157372 None:intergenic 45.0%
! TTTTACAGGGACGAAATGGG+AGG - chr8_3:23157338-23157357 None:intergenic 45.0%
GACGTGGCAGTGATTAAAAG+GGG - chr8_3:23157288-23157307 None:intergenic 45.0%
CTGACGTGGCAGTGATTAAA+AGG - chr8_3:23157286-23157305 None:intergenic 45.0%
!! CGTCATTTCCCATGCCATTT+TGG - chr8_3:23157256-23157275 None:intergenic 45.0%
GGAAATGACGAAAATACCCC+TGG + chr8_3:23156851-23156870 Msa1282580:intron 45.0%
!! CGTCATTTCCCATGCCATTT+TGG + chr8_3:23157256-23157275 Msa1282580:intron 45.0%
CTGACGTGGCAGTGATTAAA+AGG + chr8_3:23157286-23157305 Msa1282580:intron 45.0%
GACGTGGCAGTGATTAAAAG+GGG + chr8_3:23157288-23157307 Msa1282580:intron 45.0%
! TTTTACAGGGACGAAATGGG+AGG + chr8_3:23157338-23157357 Msa1282580:intron 45.0%
! ATGGGAGGATTAGTAAGCTC+AGG + chr8_3:23157353-23157372 Msa1282580:intron 45.0%
! TGGGAGGATTAGTAAGCTCA+GGG + chr8_3:23157354-23157373 Msa1282580:intron 45.0%
GCACAACATTTCTCAACGGA+TGG - chr8_3:23157655-23157674 None:intergenic 45.0%
TCACAATACCACCATGCTCT+TGG + chr8_3:23157712-23157731 Msa1282580:intron 45.0%
! CTTTCTAGTAGGATAGGTCG+TGG + chr8_3:23158055-23158074 Msa1282580:intron 45.0%
GATAGGTCGTGGTTGTTTGA+AGG + chr8_3:23158066-23158085 Msa1282580:intron 45.0%
TACCCCCACTCTCTTTCTAA+TGG - chr8_3:23158248-23158267 None:intergenic 45.0%
! AAGCCTTATCCCACTAAGTG+GGG - chr8_3:23158452-23158471 None:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+GGG - chr8_3:23158453-23158472 None:intergenic 45.0%
TTATACCAAGTGTGGCAGCT+GGG - chr8_3:23158767-23158786 None:intergenic 45.0%
TTTATACCAAGTGTGGCAGC+TGG - chr8_3:23158768-23158787 None:intergenic 45.0%
! ACGTGCATCGACAGCAATTT+AGG - chr8_3:23159111-23159130 None:intergenic 45.0%
TTGCACTATGCCACTGAGAA+TGG + chr8_3:23159192-23159211 Msa1282580:CDS 45.0%
TATGCCACTGAGAATGGATG+AGG + chr8_3:23159198-23159217 Msa1282580:CDS 45.0%
ATGCCACTGAGAATGGATGA+GGG + chr8_3:23159199-23159218 Msa1282580:CDS 45.0%
CTTTCTTGGTAAAGTCAGCC+AGG - chr8_3:23159246-23159265 None:intergenic 45.0%
TTCTCAAGCGACAGTTTGCA+TGG - chr8_3:23159309-23159328 None:intergenic 45.0%
! ATGCAAACTGTCGCTTGAGA+AGG + chr8_3:23159308-23159327 Msa1282580:CDS 45.0%
CTTCTCTGATCGTCTCTACT+CGG + chr8_3:23159336-23159355 Msa1282580:CDS 45.0%
GGTACAACTTGAACTCTGGT+GGG - chr8_3:23159372-23159391 None:intergenic 45.0%
AGGTACAACTTGAACTCTGG+TGG - chr8_3:23159373-23159392 None:intergenic 45.0%
! GGAAGGTACAACTTGAACTC+TGG - chr8_3:23159376-23159395 None:intergenic 45.0%
CAAGTTGTACCTTCCAATGC+AGG + chr8_3:23159381-23159400 Msa1282580:CDS 45.0%
CATCTCATACCTGCATTGGA+AGG - chr8_3:23159393-23159412 None:intergenic 45.0%
CAGACATCTCATACCTGCAT+TGG - chr8_3:23159397-23159416 None:intergenic 45.0%
ATGGAATTGATGCCAGGAGA+TGG + chr8_3:23159520-23159539 Msa1282580:intron 45.0%
TCAAGCATTTCATAGGGGAG+GGG - chr8_3:23160218-23160237 None:intergenic 45.0%
TTCAAGCATCTCAAAGGGGA+GGG - chr8_3:23160309-23160328 None:intergenic 45.0%
ATTCAAGCATCTCAAAGGGG+AGG - chr8_3:23160310-23160329 None:intergenic 45.0%
CATTGATACCACAAAGGGTC+GGG + chr8_3:23161106-23161125 Msa1282580:intron 45.0%
!! AAAATTGTAAAAAAAAATTA+GGG - chr8_3:23156926-23156945 None:intergenic 5.0%
!! AAAAATTGTAAAAAAAAATT+AGG - chr8_3:23156927-23156946 None:intergenic 5.0%
!! TTAAAAATCATAAAAAATTT+CGG - chr8_3:23156997-23157016 None:intergenic 5.0%
!! TTAAAAATCATAAAAAATTT+CGG - chr8_3:23156997-23157016 None:intergenic 5.0%
!!! AAATTTTGAAATTTTTTTTA+AGG + chr8_3:23157207-23157226 Msa1282580:intron 5.0%
!!! ACATATTTTAATTTTATTTT+GGG + chr8_3:23160564-23160583 Msa1282580:intron 5.0%
!! AAAATTTGATTATATTAAAA+TGG + chr8_3:23160665-23160684 Msa1282580:intron 5.0%
! AGCGTTGGGAAGAACAGCAA+CGG - chr8_3:23155206-23155225 None:intergenic 50.0%
AAGGGTTACCTTTGTGCCTG+TGG + chr8_3:23155472-23155491 Msa1282580:intron 50.0%
AGCCTTGGGTATGATGTGGT+TGG + chr8_3:23156425-23156444 Msa1282580:intron 50.0%
AGCCAACCACATCATACCCA+AGG - chr8_3:23156430-23156449 None:intergenic 50.0%
GCAGTGATTAAAAGGGGCGA+GGG - chr8_3:23157294-23157313 None:intergenic 50.0%
GCAGTGATTAAAAGGGGCGA+GGG + chr8_3:23157294-23157313 Msa1282580:intron 50.0%
! GAACTACACCAAGAGCATGG+TGG - chr8_3:23157723-23157742 None:intergenic 50.0%
CTTATCCCACTAAGTGGGGT+CGG - chr8_3:23158448-23158467 None:intergenic 50.0%
! CCAAGCCTTATCCCACTAAG+TGG - chr8_3:23158454-23158473 None:intergenic 50.0%
CCACTTAGTGGGATAAGGCT+TGG + chr8_3:23158451-23158470 Msa1282580:intron 50.0%
GTCCACATACATTACGTGCC+CGG + chr8_3:23158737-23158756 Msa1282580:CDS 50.0%
CATGGGCAGACTTACACACT+TGG - chr8_3:23158899-23158918 None:intergenic 50.0%
CAACCCTCATCCATTCTCAG+TGG - chr8_3:23159205-23159224 None:intergenic 50.0%
CACTGAGAATGGATGAGGGT+TGG + chr8_3:23159203-23159222 Msa1282580:CDS 50.0%
TGATCGTCTCTACTCGGAAG+AGG + chr8_3:23159342-23159361 Msa1282580:CDS 50.0%
TGGAGGATGGAATTGATGCC+AGG + chr8_3:23159514-23159533 Msa1282580:intron 50.0%
GCTGTGAAGATCTGGTGAAC+TGG + chr8_3:23160006-23160025 Msa1282580:intron 50.0%
TCAAGCATCTCAAAGGGGAG+GGG - chr8_3:23160308-23160327 None:intergenic 50.0%
!! GGCACTGGTTGGTACGATGT+AGG + chr8_3:23156262-23156281 Msa1282580:intron 55.0%
GGCAGTGATTAAAAGGGGCG+AGG - chr8_3:23157293-23157312 None:intergenic 55.0%
GGCAGTGATTAAAAGGGGCG+AGG + chr8_3:23157293-23157312 Msa1282580:intron 55.0%
ACTAAGTGGGGTCGGCTACA+TGG - chr8_3:23158440-23158459 None:intergenic 55.0%
ATGTAGCCGACCCCACTTAG+TGG + chr8_3:23158439-23158458 Msa1282580:intron 55.0%
TGTAGCCGACCCCACTTAGT+GGG + chr8_3:23158440-23158459 Msa1282580:intron 55.0%
CGACCCCACTTAGTGGGATA+AGG + chr8_3:23158446-23158465 Msa1282580:intron 55.0%
AGCCGGGCACGTAATGTATG+TGG - chr8_3:23158742-23158761 None:intergenic 55.0%
TGTGGAGACGCTACGAGTTC+AGG + chr8_3:23159282-23159301 Msa1282580:CDS 55.0%
!! TGCCATTCTGGCTCCCAACA+CGG + chr8_3:23160988-23161007 Msa1282580:intron 55.0%
TTCCGTGTTGGGAGCCAGAA+TGG - chr8_3:23160993-23161012 None:intergenic 55.0%
GAGAGACGAGACGAGAGGAG+AGG - chr8_3:23155177-23155196 None:intergenic 60.0%
GTTGTGTTAACCGGTGCCCC+CGG + chr8_3:23156239-23156258 Msa1282580:intron 60.0%
TTGTGTTAACCGGTGCCCCC+GGG + chr8_3:23156240-23156259 Msa1282580:intron 60.0%
ATCGTACCAACCAGTGCCCC+GGG - chr8_3:23156260-23156279 None:intergenic 60.0%
CATCGTACCAACCAGTGCCC+CGG - chr8_3:23156261-23156280 None:intergenic 60.0%
CGCGAGAGAGACGAGACGAG+AGG - chr8_3:23155182-23155201 None:intergenic 65.0%
TGTGTTAACCGGTGCCCCCG+GGG + chr8_3:23156241-23156260 Msa1282580:intron 65.0%
TCGTACCAACCAGTGCCCCG+GGG - chr8_3:23156259-23156278 None:intergenic 65.0%
AGTGTGGCAGCTGGGTCAGC+CGG - chr8_3:23158759-23158778 None:intergenic 65.0%
GCTGACCCAGCTGCCACACT+TGG + chr8_3:23158759-23158778 Msa1282580:CDS 65.0%
GTGAGGCTCCCGACCCTTTG+TGG - chr8_3:23161117-23161136 None:intergenic 65.0%
CGTACCAACCAGTGCCCCGG+GGG - chr8_3:23156258-23156277 None:intergenic 70.0%
GTGTGGCAGCTGGGTCAGCC+GGG - chr8_3:23158758-23158777 None:intergenic 70.0%
! AACCAGTGCCCCGGGGGCAC+CGG - chr8_3:23156252-23156271 None:intergenic 75.0%
! AACCGGTGCCCCCGGGGCAC+TGG + chr8_3:23156247-23156266 Msa1282580:intron 80.0%
!!! GGTGCCCCCGGGGCACTGGT+TGG + chr8_3:23156251-23156270 Msa1282580:intron 80.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 23155147 23161427 23155147 ID=Msa1282580;Name=Msa1282580
chr8_3 mRNA 23155147 23161427 23155147 ID=Msa1282580-mRNA-1;Parent=Msa1282580;Name=Msa1282580-mRNA-1;_AED=0.25;_eAED=0.25;_QI=89|0.66|0.71|0.71|0.83|0.85|7|0|192
chr8_3 exon 23155147 23155232 23155147 ID=Msa1282580-mRNA-1:exon:8262;Parent=Msa1282580-mRNA-1
chr8_3 exon 23156377 23156432 23156377 ID=Msa1282580-mRNA-1:exon:8263;Parent=Msa1282580-mRNA-1
chr8_3 exon 23156539 23156570 23156539 ID=Msa1282580-mRNA-1:exon:8264;Parent=Msa1282580-mRNA-1
chr8_3 exon 23158658 23158899 23158658 ID=Msa1282580-mRNA-1:exon:8265;Parent=Msa1282580-mRNA-1
chr8_3 exon 23159166 23159402 23159166 ID=Msa1282580-mRNA-1:exon:8266;Parent=Msa1282580-mRNA-1
chr8_3 exon 23159919 23159925 23159919 ID=Msa1282580-mRNA-1:exon:8267;Parent=Msa1282580-mRNA-1
chr8_3 exon 23161420 23161427 23161420 ID=Msa1282580-mRNA-1:exon:8268;Parent=Msa1282580-mRNA-1
chr8_3 five_prime_UTR 23155147 23155232 23155147 ID=Msa1282580-mRNA-1:five_prime_utr;Parent=Msa1282580-mRNA-1
chr8_3 five_prime_UTR 23156377 23156379 23156377 ID=Msa1282580-mRNA-1:five_prime_utr;Parent=Msa1282580-mRNA-1
chr8_3 CDS 23156380 23156432 23156380 ID=Msa1282580-mRNA-1:cds;Parent=Msa1282580-mRNA-1
chr8_3 CDS 23156539 23156570 23156539 ID=Msa1282580-mRNA-1:cds;Parent=Msa1282580-mRNA-1
chr8_3 CDS 23158658 23158899 23158658 ID=Msa1282580-mRNA-1:cds;Parent=Msa1282580-mRNA-1
chr8_3 CDS 23159166 23159402 23159166 ID=Msa1282580-mRNA-1:cds;Parent=Msa1282580-mRNA-1
chr8_3 CDS 23159919 23159925 23159919 ID=Msa1282580-mRNA-1:cds;Parent=Msa1282580-mRNA-1
chr8_3 CDS 23161420 23161427 23161420 ID=Msa1282580-mRNA-1:cds;Parent=Msa1282580-mRNA-1
Gene Sequence

>Msa1282580

ATGTTCAAGAACACATTCCAGTCTGGATTTCTTTCCATATTATACAGCCTTGGGAGCAAACCTTTGCAGATATGGGACAAAGAAGTTGTGGATGGCCATATTAAGCGACCACAAGATGAAGACATACAATCTAATGTACTGGAAATAATTGGATCGAATATTCAGTCCACATACATTACGTGCCCGGCTGACCCAGCTGCCACACTTGGTATAAAACTTCCATTCTTGGTTATGATTGTGAAGAATCTAAAGAAGTACTTCACATTTGAGATTCAAGTTTTGGATGATAAGAATGTCAGACGACGATTTCGAGCTTCTAATTTCCAAGCTGTCACTAGAGTAAAGCCGTACATTTGCACTATGCCACTGAGAATGGATGAGGGTTGGAATCAAATCCAGTTTAACCTGGCTGACTTTACCAAGAAAGCATATGGGACTAATTATGTGGAGACGCTACGAGTTCAGGTCCATGCAAACTGTCGCTTGAGAAGGATATACTTCTCTGATCGTCTCTACTCGGAAGAGGAACTCCCACCAGAGTTCAAGTTGTACCTTCCAATGCAGAGTGCAGATATTTGA

Protein sequence

>Msa1282580

MFKNTFQSGFLSILYSLGSKPLQIWDKEVVDGHIKRPQDEDIQSNVLEIIGSNIQSTYITCPADPAATLGIKLPFLVMIVKNLKKYFTFEIQVLDDKNVRRRFRASNFQAVTRVKPYICTMPLRMDEGWNQIQFNLADFTKKAYGTNYVETLRVQVHANCRLRRIYFSDRLYSEEELPPEFKLYLPMQSADI*