Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0397160 | XP_024633491.1 | 89.167 | 360 | 30 | 4 | 1 | 351 | 1 | 360 | 0.0 | 634 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0397160 | sp|Q9M0X5|CRK25_ARATH | 30.894 | 369 | 216 | 10 | 9 | 351 | 8 | 363 | 2.21e-43 | 162 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0397160 | A0A396IIX6 | 89.167 | 360 | 30 | 4 | 1 | 351 | 1 | 360 | 0.0 | 634 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0377530 | Msa0397160 | 0.815471 | 9.089851e-52 | -8.615850e-47 |
| Msa0397160 | Msa0442850 | 0.837505 | 4.995492e-57 | -8.615850e-47 |
| Msa0397160 | Msa0473240 | 0.829474 | 5.046000e-55 | -8.615850e-47 |
| Msa0397160 | Msa0517490 | 0.830419 | 2.967616e-55 | -8.615850e-47 |
| Msa0397160 | Msa0579290 | 0.800693 | 1.278654e-48 | -8.615850e-47 |
| Msa0397160 | Msa0579390 | 0.820327 | 7.273350e-53 | -8.615850e-47 |
| Msa0397160 | Msa0638280 | 0.827112 | 1.872999e-54 | -8.615850e-47 |
| Msa0397160 | Msa0638320 | 0.808691 | 2.734600e-50 | -8.615850e-47 |
| Msa0397160 | Msa0677270 | 0.803909 | 2.783941e-49 | -8.615850e-47 |
| Msa0397160 | Msa0724560 | 0.802756 | 4.822677e-49 | -8.615850e-47 |
| Msa0397160 | Msa0848900 | 0.802242 | 6.156259e-49 | -8.615850e-47 |
| Msa0397160 | Msa1021340 | 0.810135 | 1.340101e-50 | -8.615850e-47 |
| Msa0397160 | Msa1054410 | 0.808691 | 2.734479e-50 | -8.615850e-47 |
| Msa0397160 | Msa1271200 | 0.813511 | 2.466254e-51 | -8.615850e-47 |
| Msa0397160 | Msa1308480 | 0.824572 | 7.505746e-54 | -8.615850e-47 |
| Msa0397160 | Msa1369530 | 0.868838 | 4.849880e-66 | -8.615850e-47 |
| Msa0397160 | Msa1427830 | 0.806006 | 1.014092e-49 | -8.615850e-47 |
| Msa0397160 | Msa1454110 | 0.800425 | 1.450085e-48 | -8.615850e-47 |
| Msa0344830 | Msa0397160 | 0.845962 | 2.927849e-59 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0397160 | MtrunA17_Chr3g0081001 | 89.167 | 360 | 30 | 4 | 1 | 351 | 1 | 360 | 0.0 | 634 |
| Msa0397160 | MtrunA17_Chr3g0081011 | 84.401 | 359 | 45 | 4 | 1 | 351 | 1 | 356 | 0.0 | 563 |
| Msa0397160 | MtrunA17_Chr8g0354421 | 48.883 | 358 | 160 | 10 | 12 | 351 | 28 | 380 | 1.83e-108 | 332 |
| Msa0397160 | MtrunA17_Chr8g0354441 | 48.199 | 361 | 162 | 8 | 12 | 351 | 11 | 367 | 3.36e-103 | 317 |
| Msa0397160 | MtrunA17_Chr8g0354351 | 48.857 | 350 | 156 | 11 | 13 | 351 | 13 | 350 | 1.19e-98 | 305 |
| Msa0397160 | MtrunA17_Chr3g0082941 | 75.377 | 199 | 31 | 5 | 162 | 351 | 1 | 190 | 1.25e-95 | 292 |
| Msa0397160 | MtrunA17_Chr8g0354281 | 48.555 | 346 | 150 | 11 | 21 | 351 | 20 | 352 | 2.94e-95 | 296 |
| Msa0397160 | MtrunA17_Chr8g0354271 | 48.468 | 359 | 155 | 11 | 6 | 351 | 11 | 352 | 4.99e-95 | 296 |
| Msa0397160 | MtrunA17_Chr8g0354431 | 45.810 | 358 | 172 | 9 | 12 | 351 | 6 | 359 | 6.99e-88 | 278 |
| Msa0397160 | MtrunA17_Chr8g0354411 | 48.739 | 238 | 110 | 5 | 23 | 248 | 22 | 259 | 1.02e-72 | 228 |
| Msa0397160 | MtrunA17_Chr8g0354341 | 43.478 | 230 | 117 | 6 | 21 | 238 | 19 | 247 | 6.84e-57 | 186 |
| Msa0397160 | MtrunA17_Chr3g0081031 | 35.474 | 327 | 197 | 6 | 35 | 351 | 47 | 369 | 7.81e-53 | 185 |
| Msa0397160 | MtrunA17_Chr3g0082951 | 78.641 | 103 | 20 | 1 | 32 | 132 | 119 | 221 | 8.92e-52 | 171 |
| Msa0397160 | MtrunA17_Chr1g0205771 | 33.134 | 335 | 199 | 12 | 29 | 351 | 39 | 360 | 5.08e-42 | 155 |
| Msa0397160 | MtrunA17_Chr3g0081051 | 35.652 | 230 | 141 | 5 | 6 | 229 | 1 | 229 | 4.70e-41 | 144 |
| Msa0397160 | MtrunA17_Chr1g0206531 | 31.081 | 370 | 206 | 13 | 6 | 350 | 8 | 353 | 6.42e-40 | 149 |
| Msa0397160 | MtrunA17_Chr1g0206291 | 28.997 | 369 | 233 | 11 | 1 | 351 | 13 | 370 | 2.28e-39 | 146 |
| Msa0397160 | MtrunA17_Chr5g0394021 | 32.333 | 300 | 172 | 7 | 60 | 351 | 64 | 340 | 1.14e-38 | 145 |
| Msa0397160 | MtrunA17_Chr1g0154311 | 32.092 | 349 | 199 | 11 | 29 | 351 | 32 | 368 | 1.44e-38 | 145 |
| Msa0397160 | MtrunA17_Chr5g0394001 | 29.609 | 358 | 207 | 9 | 14 | 351 | 14 | 346 | 4.44e-37 | 141 |
| Msa0397160 | MtrunA17_Chr1g0206351 | 30.919 | 359 | 199 | 11 | 25 | 351 | 29 | 370 | 5.91e-37 | 140 |
| Msa0397160 | MtrunA17_Chr1g0206461 | 30.556 | 360 | 219 | 10 | 6 | 351 | 8 | 350 | 1.60e-36 | 139 |
| Msa0397160 | MtrunA17_Chr1g0206231 | 27.647 | 340 | 209 | 12 | 34 | 351 | 39 | 363 | 2.12e-31 | 125 |
| Msa0397160 | MtrunA17_Chr6g0475111 | 26.377 | 345 | 219 | 10 | 23 | 351 | 279 | 604 | 4.51e-31 | 124 |
| Msa0397160 | MtrunA17_Chr6g0475111 | 26.816 | 179 | 123 | 4 | 66 | 236 | 74 | 252 | 7.88e-20 | 90.9 |
| Msa0397160 | MtrunA17_Chr5g0393981 | 28.324 | 346 | 218 | 10 | 16 | 351 | 88 | 413 | 8.27e-31 | 123 |
| Msa0397160 | MtrunA17_Chr1g0154351 | 28.912 | 377 | 223 | 13 | 10 | 351 | 9 | 375 | 1.49e-30 | 122 |
| Msa0397160 | MtrunA17_Chr2g0323011 | 31.197 | 234 | 151 | 7 | 1 | 227 | 1 | 231 | 3.98e-30 | 115 |
| Msa0397160 | MtrunA17_Chr1g0206331 | 29.867 | 375 | 211 | 15 | 1 | 351 | 6 | 352 | 5.97e-30 | 120 |
| Msa0397160 | MtrunA17_Chr2g0322981 | 28.194 | 227 | 147 | 5 | 1 | 217 | 1 | 221 | 7.49e-30 | 114 |
| Msa0397160 | MtrunA17_Chr1g0206521 | 29.834 | 362 | 221 | 10 | 6 | 351 | 650 | 994 | 8.21e-30 | 120 |
| Msa0397160 | MtrunA17_Chr1g0206521 | 30.532 | 357 | 204 | 12 | 16 | 351 | 19 | 352 | 1.96e-28 | 116 |
| Msa0397160 | MtrunA17_Chr1g0206361 | 28.779 | 344 | 218 | 11 | 23 | 351 | 29 | 360 | 9.32e-30 | 120 |
| Msa0397160 | MtrunA17_Chr7g0234231 | 30.932 | 236 | 158 | 4 | 10 | 240 | 3 | 238 | 1.18e-29 | 114 |
| Msa0397160 | MtrunA17_Chr8g0347571 | 28.530 | 347 | 203 | 11 | 25 | 351 | 266 | 587 | 1.66e-29 | 119 |
| Msa0397160 | MtrunA17_Chr8g0347571 | 29.213 | 178 | 115 | 4 | 66 | 236 | 69 | 242 | 9.05e-19 | 87.8 |
| Msa0397160 | MtrunA17_Chr6g0474901 | 27.616 | 344 | 206 | 12 | 24 | 351 | 267 | 583 | 2.37e-29 | 119 |
| Msa0397160 | MtrunA17_Chr6g0474901 | 30.469 | 256 | 152 | 6 | 5 | 244 | 6 | 251 | 1.61e-26 | 110 |
| Msa0397160 | MtrunA17_Chr1g0206401 | 29.226 | 349 | 204 | 14 | 34 | 351 | 31 | 367 | 2.58e-29 | 119 |
| Msa0397160 | MtrunA17_Chr6g0475001 | 27.114 | 343 | 208 | 11 | 24 | 351 | 274 | 589 | 1.54e-28 | 116 |
| Msa0397160 | MtrunA17_Chr6g0475001 | 32.584 | 267 | 144 | 10 | 2 | 244 | 4 | 258 | 6.05e-28 | 115 |
| Msa0397160 | MtrunA17_Chr6g0475091 | 27.778 | 342 | 209 | 11 | 23 | 351 | 282 | 598 | 1.90e-28 | 116 |
| Msa0397160 | MtrunA17_Chr6g0475091 | 29.817 | 218 | 138 | 4 | 35 | 237 | 43 | 260 | 1.07e-21 | 96.7 |
| Msa0397160 | MtrunA17_Chr5g0394011 | 28.363 | 342 | 192 | 15 | 45 | 351 | 45 | 368 | 2.74e-28 | 115 |
| Msa0397160 | MtrunA17_Chr1g0154361 | 32.051 | 234 | 147 | 6 | 7 | 229 | 8 | 240 | 3.66e-28 | 111 |
| Msa0397160 | MtrunA17_Chr1g0206451 | 29.722 | 360 | 227 | 8 | 6 | 351 | 42 | 389 | 6.38e-28 | 114 |
| Msa0397160 | MtrunA17_Chr6g0474811 | 26.979 | 341 | 210 | 12 | 24 | 351 | 276 | 590 | 7.94e-28 | 114 |
| Msa0397160 | MtrunA17_Chr6g0474811 | 30.634 | 284 | 163 | 7 | 2 | 260 | 4 | 278 | 7.45e-27 | 112 |
| Msa0397160 | MtrunA17_Chr6g0474971 | 31.538 | 260 | 144 | 8 | 5 | 244 | 6 | 251 | 9.81e-28 | 110 |
| Msa0397160 | MtrunA17_Chr5g0428591 | 32.365 | 241 | 142 | 10 | 13 | 237 | 10 | 245 | 5.31e-27 | 107 |
| Msa0397160 | MtrunA17_Chr1g0154371 | 28.611 | 360 | 227 | 12 | 13 | 351 | 23 | 373 | 6.34e-27 | 112 |
| Msa0397160 | MtrunA17_Chr5g0428571 | 27.795 | 331 | 179 | 12 | 32 | 351 | 34 | 315 | 1.03e-26 | 110 |
| Msa0397160 | MtrunA17_Chr1g0154321 | 27.225 | 382 | 225 | 14 | 13 | 351 | 14 | 385 | 1.58e-26 | 110 |
| Msa0397160 | MtrunA17_Chr6g0475201 | 27.119 | 354 | 202 | 13 | 21 | 351 | 271 | 591 | 3.07e-26 | 110 |
| Msa0397160 | MtrunA17_Chr6g0475201 | 27.626 | 257 | 161 | 7 | 5 | 244 | 9 | 257 | 2.30e-22 | 98.6 |
| Msa0397160 | MtrunA17_Chr1g0154341 | 33.333 | 228 | 137 | 8 | 36 | 249 | 35 | 261 | 3.27e-26 | 105 |
| Msa0397160 | MtrunA17_Chr1g0206561 | 32.143 | 336 | 195 | 13 | 35 | 351 | 25 | 346 | 8.03e-26 | 108 |
| Msa0397160 | MtrunA17_Chr2g0280391 | 26.408 | 284 | 179 | 9 | 14 | 279 | 9 | 280 | 2.26e-24 | 100 |
| Msa0397160 | MtrunA17_Chr6g0474871 | 27.353 | 340 | 207 | 12 | 24 | 351 | 271 | 582 | 4.57e-24 | 103 |
| Msa0397160 | MtrunA17_Chr6g0474871 | 29.008 | 262 | 157 | 8 | 2 | 244 | 4 | 255 | 6.40e-21 | 94.4 |
| Msa0397160 | MtrunA17_Chr1g0206571 | 27.948 | 229 | 149 | 7 | 26 | 239 | 33 | 260 | 1.07e-23 | 99.8 |
| Msa0397160 | MtrunA17_Chr6g0474861 | 27.273 | 363 | 188 | 10 | 2 | 351 | 4 | 303 | 4.85e-23 | 100 |
| Msa0397160 | MtrunA17_Chr6g0475121 | 33.071 | 254 | 150 | 9 | 10 | 244 | 6 | 258 | 1.54e-22 | 98.6 |
| Msa0397160 | MtrunA17_Chr6g0475121 | 29.327 | 208 | 113 | 8 | 50 | 236 | 296 | 490 | 4.18e-18 | 85.5 |
| Msa0397160 | MtrunA17_Chr2g0280361 | 28.099 | 242 | 146 | 9 | 14 | 236 | 9 | 241 | 2.45e-22 | 95.1 |
| Msa0397160 | MtrunA17_Chr5g0428531 | 30.242 | 248 | 143 | 9 | 13 | 238 | 10 | 249 | 3.27e-22 | 95.1 |
| Msa0397160 | MtrunA17_Chr1g0206381 | 28.522 | 291 | 161 | 12 | 37 | 291 | 39 | 318 | 1.39e-19 | 88.2 |
| Msa0397160 | MtrunA17_Chr1g0206251 | 31.628 | 215 | 122 | 10 | 25 | 227 | 287 | 488 | 1.66e-19 | 89.7 |
| Msa0397160 | MtrunA17_Chr1g0206201 | 26.778 | 239 | 158 | 7 | 6 | 229 | 6 | 242 | 9.88e-19 | 85.1 |
| Msa0397160 | MtrunA17_Chr1g0206601 | 25.379 | 264 | 175 | 8 | 5 | 247 | 24 | 286 | 1.04e-18 | 85.1 |
| Msa0397160 | MtrunA17_Chr3g0119041 | 28.198 | 383 | 216 | 17 | 1 | 351 | 2 | 357 | 1.12e-18 | 87.4 |
| Msa0397160 | MtrunA17_Chr1g0206651 | 27.755 | 245 | 153 | 9 | 13 | 237 | 11 | 251 | 4.02e-18 | 82.8 |
| Msa0397160 | MtrunA17_Chr5g0426941 | 24.928 | 345 | 221 | 11 | 34 | 351 | 23 | 356 | 9.53e-18 | 84.7 |
| Msa0397160 | MtrunA17_Chr1g0206421 | 30.380 | 158 | 95 | 3 | 71 | 213 | 1 | 158 | 2.72e-16 | 80.1 |
| Msa0397160 | MtrunA17_Chr8g0354321 | 45.918 | 98 | 40 | 5 | 192 | 283 | 14 | 104 | 1.81e-15 | 71.6 |
| Msa0397160 | MtrunA17_Chr2g0280381 | 25.088 | 283 | 169 | 11 | 14 | 272 | 9 | 272 | 2.28e-15 | 75.5 |
| Msa0397160 | MtrunA17_Chr7g0230381 | 29.947 | 187 | 117 | 5 | 45 | 225 | 54 | 232 | 3.72e-15 | 74.7 |
| Msa0397160 | MtrunA17_Chr8g0354331 | 35.897 | 117 | 36 | 1 | 274 | 351 | 1 | 117 | 4.92e-15 | 75.9 |
| Msa0397160 | MtrunA17_Chr8g0354401 | 62.745 | 51 | 19 | 0 | 301 | 351 | 22 | 72 | 8.75e-15 | 69.7 |
| Msa0397160 | MtrunA17_Chr1g0206581 | 25.940 | 266 | 172 | 8 | 5 | 246 | 21 | 285 | 4.14e-14 | 72.0 |
| Msa0397160 | MtrunA17_Chr3g0110311 | 25.175 | 286 | 183 | 8 | 1 | 279 | 1 | 262 | 6.00e-14 | 71.2 |
| Msa0397160 | MtrunA17_Chr7g0262011 | 28.492 | 179 | 119 | 4 | 50 | 225 | 120 | 292 | 8.00e-13 | 68.9 |
| Msa0397160 | MtrunA17_Chr6g0477591 | 41.096 | 73 | 40 | 1 | 79 | 151 | 2 | 71 | 9.70e-13 | 63.5 |
| Msa0397160 | MtrunA17_Chr8g0354311 | 56.863 | 51 | 22 | 0 | 301 | 351 | 5 | 55 | 1.26e-12 | 64.3 |
| Msa0397160 | MtrunA17_Chr5g0434531 | 26.027 | 219 | 145 | 6 | 10 | 219 | 1 | 211 | 2.78e-12 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0397160 | AT4G05200.1 | 30.894 | 369 | 216 | 10 | 9 | 351 | 8 | 363 | 2.24e-44 | 162 |
| Msa0397160 | AT4G05200.2 | 30.894 | 369 | 216 | 10 | 9 | 351 | 26 | 381 | 3.78e-44 | 161 |
| Msa0397160 | AT4G21410.2 | 28.652 | 356 | 224 | 11 | 23 | 351 | 21 | 373 | 4.51e-37 | 140 |
| Msa0397160 | AT4G21410.3 | 28.652 | 356 | 224 | 11 | 23 | 351 | 21 | 373 | 1.40e-36 | 140 |
| Msa0397160 | AT4G23180.3 | 29.944 | 354 | 198 | 13 | 25 | 351 | 34 | 364 | 7.31e-36 | 136 |
| Msa0397160 | AT4G23180.2 | 29.944 | 354 | 198 | 13 | 25 | 351 | 34 | 364 | 1.75e-35 | 136 |
| Msa0397160 | AT4G23180.1 | 29.944 | 354 | 198 | 13 | 25 | 351 | 34 | 364 | 3.97e-35 | 136 |
| Msa0397160 | AT4G23160.1 | 29.178 | 353 | 213 | 9 | 22 | 351 | 37 | 375 | 1.86e-33 | 131 |
| Msa0397160 | AT4G23160.3 | 29.178 | 353 | 213 | 9 | 22 | 351 | 617 | 955 | 3.31e-33 | 131 |
| Msa0397160 | AT4G23160.2 | 29.178 | 353 | 213 | 9 | 22 | 351 | 617 | 955 | 3.31e-33 | 131 |
| Msa0397160 | AT3G22060.1 | 32.365 | 241 | 152 | 6 | 6 | 237 | 12 | 250 | 4.76e-33 | 124 |
| Msa0397160 | AT4G23230.1 | 28.857 | 350 | 199 | 11 | 30 | 351 | 26 | 353 | 6.26e-32 | 126 |
| Msa0397160 | AT4G21400.3 | 27.049 | 366 | 229 | 11 | 10 | 351 | 14 | 365 | 1.21e-30 | 122 |
| Msa0397160 | AT4G21400.2 | 27.049 | 366 | 229 | 11 | 10 | 351 | 14 | 365 | 2.21e-30 | 122 |
| Msa0397160 | AT3G58310.1 | 30.380 | 237 | 154 | 7 | 1 | 227 | 6 | 241 | 2.37e-30 | 116 |
| Msa0397160 | AT4G21400.6 | 26.415 | 371 | 247 | 9 | 5 | 351 | 9 | 377 | 8.29e-30 | 120 |
| Msa0397160 | AT4G21400.4 | 26.415 | 371 | 247 | 9 | 5 | 351 | 9 | 377 | 8.29e-30 | 120 |
| Msa0397160 | AT4G21400.5 | 26.415 | 371 | 247 | 9 | 5 | 351 | 9 | 377 | 8.29e-30 | 120 |
| Msa0397160 | AT4G21400.1 | 26.776 | 366 | 242 | 9 | 10 | 351 | 14 | 377 | 1.18e-29 | 120 |
| Msa0397160 | AT4G38830.1 | 28.611 | 360 | 208 | 14 | 23 | 351 | 19 | 360 | 4.63e-29 | 118 |
| Msa0397160 | AT4G21400.7 | 26.557 | 305 | 191 | 8 | 68 | 351 | 47 | 339 | 6.88e-29 | 118 |
| Msa0397160 | AT4G23280.2 | 29.379 | 354 | 218 | 12 | 18 | 351 | 17 | 358 | 3.44e-27 | 113 |
| Msa0397160 | AT4G23140.2 | 27.933 | 358 | 213 | 10 | 25 | 351 | 24 | 367 | 8.07e-27 | 112 |
| Msa0397160 | AT4G23140.1 | 27.933 | 358 | 213 | 10 | 25 | 351 | 24 | 367 | 9.38e-27 | 112 |
| Msa0397160 | AT4G23280.3 | 29.213 | 356 | 218 | 13 | 18 | 351 | 17 | 360 | 2.81e-26 | 110 |
| Msa0397160 | AT4G23280.1 | 29.213 | 356 | 218 | 13 | 18 | 351 | 17 | 360 | 3.15e-26 | 110 |
| Msa0397160 | AT3G21990.1 | 28.571 | 238 | 152 | 7 | 8 | 229 | 8 | 243 | 1.44e-24 | 101 |
| Msa0397160 | AT4G23310.2 | 28.011 | 357 | 219 | 12 | 25 | 351 | 136 | 484 | 1.53e-24 | 105 |
| Msa0397160 | AT4G23310.2 | 38.739 | 111 | 64 | 1 | 22 | 128 | 20 | 130 | 4.90e-14 | 73.9 |
| Msa0397160 | AT4G23170.1 | 29.956 | 227 | 146 | 5 | 22 | 236 | 20 | 245 | 3.00e-24 | 100 |
| Msa0397160 | AT4G23270.2 | 29.558 | 362 | 215 | 13 | 7 | 351 | 4 | 342 | 3.99e-24 | 103 |
| Msa0397160 | AT4G23270.1 | 29.558 | 362 | 215 | 13 | 7 | 351 | 4 | 342 | 3.99e-24 | 103 |
| Msa0397160 | AT4G23270.3 | 29.558 | 362 | 215 | 13 | 7 | 351 | 4 | 342 | 5.65e-24 | 103 |
| Msa0397160 | AT4G20640.1 | 27.848 | 237 | 155 | 6 | 8 | 229 | 8 | 243 | 8.74e-24 | 99.0 |
| Msa0397160 | AT4G20630.1 | 27.848 | 237 | 155 | 6 | 8 | 229 | 8 | 243 | 8.74e-24 | 99.0 |
| Msa0397160 | AT4G20580.1 | 27.848 | 237 | 155 | 6 | 8 | 229 | 8 | 243 | 8.74e-24 | 99.0 |
| Msa0397160 | AT4G20600.1 | 27.848 | 237 | 155 | 6 | 8 | 229 | 8 | 243 | 8.74e-24 | 99.0 |
| Msa0397160 | AT4G20620.1 | 27.848 | 237 | 155 | 6 | 8 | 229 | 8 | 243 | 8.74e-24 | 99.0 |
| Msa0397160 | AT4G20610.1 | 27.848 | 237 | 155 | 6 | 8 | 229 | 8 | 243 | 8.74e-24 | 99.0 |
| Msa0397160 | AT4G20590.1 | 27.848 | 237 | 155 | 6 | 8 | 229 | 8 | 243 | 8.74e-24 | 99.0 |
| Msa0397160 | AT4G20670.1 | 27.848 | 237 | 155 | 6 | 8 | 229 | 8 | 243 | 1.02e-23 | 99.0 |
| Msa0397160 | AT4G20570.1 | 27.848 | 237 | 155 | 6 | 8 | 229 | 22 | 257 | 1.13e-23 | 99.0 |
| Msa0397160 | AT4G20560.1 | 27.848 | 237 | 155 | 6 | 8 | 229 | 22 | 257 | 1.13e-23 | 99.0 |
| Msa0397160 | AT4G20540.1 | 27.848 | 237 | 155 | 6 | 8 | 229 | 22 | 257 | 1.13e-23 | 99.0 |
| Msa0397160 | AT4G20645.1 | 27.848 | 237 | 155 | 6 | 8 | 229 | 22 | 257 | 1.13e-23 | 99.0 |
| Msa0397160 | AT4G20530.1 | 27.848 | 237 | 155 | 6 | 8 | 229 | 22 | 257 | 1.13e-23 | 99.0 |
| Msa0397160 | AT4G20550.1 | 27.848 | 237 | 155 | 6 | 8 | 229 | 22 | 257 | 1.13e-23 | 99.0 |
| Msa0397160 | AT5G48540.1 | 31.050 | 219 | 142 | 6 | 35 | 244 | 28 | 246 | 3.47e-23 | 97.4 |
| Msa0397160 | AT4G21230.1 | 27.019 | 322 | 203 | 9 | 45 | 351 | 45 | 349 | 9.12e-23 | 100 |
| Msa0397160 | AT4G23150.1 | 28.986 | 345 | 218 | 10 | 22 | 351 | 20 | 352 | 1.28e-22 | 99.8 |
| Msa0397160 | AT4G23130.1 | 28.451 | 355 | 200 | 14 | 26 | 351 | 27 | 356 | 1.80e-22 | 99.4 |
| Msa0397160 | AT1G61750.1 | 29.665 | 209 | 134 | 7 | 22 | 220 | 21 | 226 | 5.43e-22 | 95.9 |
| Msa0397160 | AT4G23130.3 | 27.887 | 355 | 206 | 13 | 26 | 351 | 27 | 360 | 6.82e-22 | 97.4 |
| Msa0397160 | AT4G23130.2 | 27.887 | 355 | 206 | 13 | 26 | 351 | 27 | 360 | 6.96e-22 | 97.4 |
| Msa0397160 | AT2G31620.1 | 31.364 | 220 | 135 | 7 | 23 | 229 | 26 | 242 | 9.40e-22 | 93.6 |
| Msa0397160 | AT4G23310.1 | 25.888 | 394 | 220 | 13 | 25 | 351 | 136 | 524 | 1.25e-21 | 96.7 |
| Msa0397160 | AT4G23310.1 | 38.739 | 111 | 64 | 1 | 22 | 128 | 20 | 130 | 4.52e-14 | 73.9 |
| Msa0397160 | AT4G21410.1 | 26.587 | 252 | 158 | 10 | 123 | 351 | 1 | 248 | 3.44e-21 | 95.1 |
| Msa0397160 | AT3G21970.1 | 29.864 | 221 | 133 | 8 | 8 | 207 | 9 | 228 | 5.33e-21 | 91.7 |
| Msa0397160 | AT4G23240.1 | 27.217 | 327 | 200 | 14 | 47 | 351 | 41 | 351 | 5.55e-21 | 94.7 |
| Msa0397160 | AT3G45860.1 | 26.433 | 314 | 183 | 9 | 68 | 351 | 72 | 367 | 6.05e-21 | 94.7 |
| Msa0397160 | AT1G63550.1 | 28.095 | 210 | 141 | 5 | 28 | 228 | 29 | 237 | 4.79e-20 | 90.1 |
| Msa0397160 | AT3G60720.1 | 26.939 | 245 | 159 | 6 | 45 | 282 | 43 | 274 | 1.71e-19 | 87.4 |
| Msa0397160 | AT3G60720.3 | 26.939 | 245 | 159 | 6 | 45 | 282 | 43 | 274 | 2.29e-19 | 87.4 |
| Msa0397160 | AT4G23220.1 | 27.679 | 336 | 195 | 13 | 45 | 350 | 35 | 352 | 2.80e-19 | 89.7 |
| Msa0397160 | AT3G29040.1 | 28.384 | 229 | 142 | 8 | 1 | 212 | 1 | 224 | 8.88e-19 | 85.1 |
| Msa0397160 | AT3G21960.1 | 25.203 | 246 | 164 | 7 | 1 | 229 | 7 | 249 | 9.40e-19 | 85.1 |
| Msa0397160 | AT3G21910.1 | 28.253 | 269 | 172 | 9 | 1 | 249 | 7 | 274 | 1.33e-18 | 85.1 |
| Msa0397160 | AT3G60720.2 | 29.412 | 187 | 120 | 4 | 45 | 225 | 43 | 223 | 4.24e-18 | 83.2 |
| Msa0397160 | AT3G29050.2 | 25.806 | 279 | 173 | 9 | 1 | 248 | 6 | 281 | 1.08e-17 | 82.8 |
| Msa0397160 | AT5G41300.1 | 26.471 | 238 | 154 | 6 | 7 | 228 | 7 | 239 | 1.21e-17 | 82.4 |
| Msa0397160 | AT4G04490.1 | 26.048 | 334 | 210 | 11 | 42 | 351 | 36 | 356 | 1.47e-17 | 84.3 |
| Msa0397160 | AT5G41290.1 | 30.256 | 195 | 122 | 6 | 45 | 228 | 44 | 235 | 3.48e-17 | 81.3 |
| Msa0397160 | AT1G63570.3 | 27.004 | 237 | 160 | 7 | 1 | 228 | 1 | 233 | 1.03e-16 | 79.7 |
| Msa0397160 | AT1G63570.1 | 27.004 | 237 | 160 | 7 | 1 | 228 | 1 | 233 | 1.03e-16 | 79.7 |
| Msa0397160 | AT1G63570.2 | 27.004 | 237 | 160 | 7 | 1 | 228 | 54 | 286 | 2.00e-16 | 79.7 |
| Msa0397160 | AT4G21400.8 | 25.600 | 250 | 153 | 8 | 123 | 351 | 1 | 238 | 3.59e-16 | 80.1 |
| Msa0397160 | AT1G70690.1 | 29.911 | 224 | 142 | 7 | 9 | 225 | 8 | 223 | 1.30e-15 | 77.0 |
| Msa0397160 | AT4G04500.1 | 26.332 | 319 | 184 | 11 | 66 | 351 | 61 | 361 | 1.46e-15 | 78.2 |
| Msa0397160 | AT4G04500.2 | 26.332 | 319 | 184 | 11 | 66 | 351 | 61 | 361 | 1.72e-15 | 77.8 |
| Msa0397160 | AT4G04500.3 | 26.332 | 319 | 184 | 11 | 66 | 351 | 61 | 361 | 1.72e-15 | 77.8 |
| Msa0397160 | AT5G37660.1 | 27.426 | 237 | 158 | 7 | 3 | 233 | 7 | 235 | 4.37e-15 | 75.1 |
| Msa0397160 | AT1G63590.1 | 28.426 | 197 | 128 | 6 | 34 | 218 | 32 | 227 | 4.98e-15 | 74.7 |
| Msa0397160 | AT5G37660.2 | 27.778 | 234 | 155 | 7 | 3 | 230 | 7 | 232 | 5.02e-15 | 75.1 |
| Msa0397160 | AT4G00970.2 | 23.853 | 327 | 207 | 11 | 44 | 351 | 57 | 360 | 7.83e-15 | 75.9 |
| Msa0397160 | AT4G00970.1 | 23.853 | 327 | 207 | 11 | 44 | 351 | 57 | 360 | 9.76e-15 | 75.9 |
| Msa0397160 | AT4G23200.2 | 25.948 | 343 | 214 | 14 | 35 | 351 | 24 | 352 | 1.99e-14 | 74.7 |
| Msa0397160 | AT4G23200.1 | 25.948 | 343 | 214 | 14 | 35 | 351 | 24 | 352 | 2.52e-14 | 74.7 |
| Msa0397160 | AT4G23190.1 | 26.453 | 344 | 199 | 14 | 46 | 351 | 39 | 366 | 4.10e-14 | 73.9 |
| Msa0397160 | AT4G23190.2 | 26.453 | 344 | 199 | 14 | 46 | 351 | 39 | 366 | 4.22e-14 | 73.9 |
| Msa0397160 | AT3G21940.1 | 29.032 | 248 | 137 | 12 | 21 | 237 | 35 | 274 | 6.33e-14 | 71.6 |
| Msa0397160 | AT4G04570.1 | 20.408 | 343 | 239 | 8 | 35 | 351 | 30 | 364 | 9.59e-14 | 72.8 |
| Msa0397160 | AT3G22050.1 | 27.500 | 240 | 158 | 9 | 1 | 227 | 7 | 243 | 1.12e-13 | 70.5 |
| Msa0397160 | AT5G41280.1 | 29.268 | 164 | 100 | 4 | 77 | 228 | 77 | 236 | 1.17e-13 | 70.9 |
| Msa0397160 | AT3G21940.2 | 29.944 | 177 | 98 | 6 | 87 | 237 | 3 | 179 | 1.48e-13 | 68.6 |
| Msa0397160 | AT4G04570.2 | 20.408 | 343 | 239 | 8 | 35 | 351 | 30 | 364 | 1.76e-13 | 72.0 |
| Msa0397160 | AT4G20680.1 | 22.222 | 252 | 173 | 7 | 1 | 231 | 7 | 256 | 2.11e-13 | 70.1 |
| Msa0397160 | AT3G22040.1 | 25.306 | 245 | 160 | 11 | 1 | 229 | 7 | 244 | 2.78e-13 | 69.3 |
| Msa0397160 | AT4G11480.4 | 27.329 | 322 | 197 | 13 | 46 | 351 | 37 | 337 | 3.38e-13 | 71.2 |
| Msa0397160 | AT4G11480.1 | 27.329 | 322 | 197 | 13 | 46 | 351 | 37 | 337 | 3.97e-13 | 70.9 |
| Msa0397160 | AT4G23290.2 | 26.129 | 310 | 188 | 10 | 79 | 351 | 74 | 379 | 5.54e-13 | 70.5 |
| Msa0397160 | AT4G11470.1 | 24.702 | 336 | 204 | 11 | 47 | 351 | 38 | 355 | 1.48e-12 | 69.3 |
| Msa0397160 | AT3G22000.1 | 22.353 | 255 | 169 | 7 | 1 | 231 | 7 | 256 | 1.53e-12 | 67.4 |
| Msa0397160 | AT4G23300.1 | 27.035 | 344 | 200 | 14 | 46 | 351 | 39 | 369 | 1.88e-12 | 68.9 |
| Msa0397160 | AT4G11470.2 | 24.702 | 336 | 204 | 11 | 47 | 351 | 43 | 360 | 1.90e-12 | 68.9 |
| Msa0397160 | AT4G11480.2 | 27.624 | 362 | 218 | 16 | 7 | 351 | 6 | 340 | 1.91e-12 | 68.6 |
| Msa0397160 | AT4G11480.3 | 27.640 | 322 | 199 | 14 | 46 | 351 | 37 | 340 | 2.65e-12 | 68.6 |
| Msa0397160 | AT1G63600.1 | 26.368 | 201 | 127 | 5 | 44 | 228 | 50 | 245 | 5.10e-12 | 66.6 |
| Msa0397160 | AT4G23190.3 | 26.263 | 297 | 169 | 12 | 90 | 351 | 7 | 288 | 5.59e-12 | 67.4 |
| Msa0397160 | AT4G23190.4 | 26.263 | 297 | 169 | 12 | 90 | 351 | 7 | 288 | 5.59e-12 | 67.4 |
| Msa0397160 | AT3G21900.2 | 24.242 | 231 | 163 | 8 | 5 | 227 | 9 | 235 | 1.22e-11 | 64.7 |
| Msa0397160 | AT4G28670.1 | 22.500 | 360 | 247 | 10 | 7 | 351 | 5 | 347 | 1.40e-11 | 66.2 |
| Msa0397160 | AT4G11530.1 | 27.228 | 202 | 129 | 7 | 45 | 229 | 36 | 236 | 1.52e-11 | 66.2 |
| Msa0397160 | AT4G04540.1 | 25.146 | 342 | 210 | 14 | 45 | 351 | 39 | 369 | 1.89e-11 | 65.9 |
| Msa0397160 | AT4G04540.3 | 25.146 | 342 | 210 | 14 | 45 | 351 | 39 | 369 | 2.16e-11 | 65.5 |
| Msa0397160 | AT4G04540.2 | 25.146 | 342 | 210 | 14 | 45 | 351 | 39 | 369 | 2.69e-11 | 65.1 |
| Msa0397160 | AT1G63580.1 | 26.360 | 239 | 127 | 8 | 5 | 217 | 4 | 219 | 3.69e-11 | 63.5 |
| Msa0397160 | AT4G23210.1 | 26.571 | 350 | 199 | 16 | 46 | 351 | 39 | 374 | 3.70e-11 | 64.7 |
| Msa0397160 | AT4G23210.3 | 26.571 | 350 | 199 | 16 | 46 | 351 | 39 | 374 | 3.75e-11 | 64.7 |
| Msa0397160 | AT4G23210.2 | 26.361 | 349 | 201 | 15 | 46 | 351 | 39 | 374 | 4.07e-11 | 64.7 |
| Msa0397160 | AT4G23210.4 | 26.361 | 349 | 201 | 15 | 46 | 351 | 39 | 374 | 4.07e-11 | 64.7 |
| Msa0397160 | AT4G23210.5 | 26.361 | 349 | 201 | 15 | 46 | 351 | 39 | 374 | 4.72e-11 | 64.3 |
| Msa0397160 | AT4G11490.1 | 23.457 | 324 | 205 | 11 | 46 | 351 | 39 | 337 | 7.95e-11 | 63.9 |
Find 74 sgRNAs with CRISPR-Local
Find 134 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATTCCAACCATAATTTCTT+TGG | 0.192300 | 3_2:+16132438 | Msa0397160:CDS |
| ACATAATTCTGAAAAGTTAT+TGG | 0.212702 | 3_2:-16133920 | None:intergenic |
| CCTCATTCCATACAACTTAT+TGG | 0.213123 | 3_2:-16132580 | None:intergenic |
| TCCCAATAATCCCTTTAATA+TGG | 0.222212 | 3_2:+16133884 | Msa0397160:CDS |
| CTCTGTCGAATCCATATTAA+AGG | 0.234746 | 3_2:-16133895 | None:intergenic |
| ATCCATATTAAAGGGATTAT+TGG | 0.240396 | 3_2:-16133886 | None:intergenic |
| TCTCCTCCTTTGCCTAATTC+AGG | 0.261524 | 3_2:+16132809 | Msa0397160:CDS |
| TGAGGTTCCCAAAGAAATTA+TGG | 0.272174 | 3_2:-16132446 | None:intergenic |
| CAATCATCACCTACATAATT+TGG | 0.289363 | 3_2:-16131454 | None:intergenic |
| GCAATGAAAGGACTTTATTA+AGG | 0.295900 | 3_2:-16131522 | None:intergenic |
| ATCTTTGTCCCACAACATTT+AGG | 0.317709 | 3_2:-16132708 | None:intergenic |
| TCCATATTAAAGGGATTATT+GGG | 0.324430 | 3_2:-16133885 | None:intergenic |
| TTTAATAAGTGAAGCTACTT+TGG | 0.335015 | 3_2:+16132554 | Msa0397160:CDS |
| ATAACAGCTGAAGCTCTATT+AGG | 0.342092 | 3_2:-16131706 | None:intergenic |
| TTCTTTGTAGCACTTGCAGC+AGG | 0.364453 | 3_2:+16133557 | Msa0397160:intron |
| GATTGTAGAGGTGATGTTAC+AGG | 0.366258 | 3_2:+16131628 | Msa0397160:CDS |
| GTTGTTGTATCTTCTTCATA+TGG | 0.366902 | 3_2:+16133657 | Msa0397160:CDS |
| ATAGAGCTTCAGCTGTTATA+TGG | 0.367320 | 3_2:+16131710 | Msa0397160:CDS |
| ATGAATCCTCTCCTTGAGTA+TGG | 0.372113 | 3_2:-16133849 | None:intergenic |
| ATTCCAACCATAATTTCTTT+GGG | 0.376334 | 3_2:+16132439 | Msa0397160:CDS |
| ATGGATTGGTGCAGTGTAGT+AGG | 0.390086 | 3_2:+16132631 | Msa0397160:intron |
| TGAAAGGACTTTATTAAGGT+TGG | 0.393193 | 3_2:-16131518 | None:intergenic |
| AAACTAGGAGAAGGTGGATT+TGG | 0.396686 | 3_2:+16133943 | Msa0397160:CDS |
| AACACAGTTGATGCTGTCTA+TGG | 0.398155 | 3_2:+16131598 | Msa0397160:CDS |
| GATTACATTGCTTGTCAGTA+AGG | 0.401848 | 3_2:-16132656 | None:intergenic |
| TTGGAGACCAATAAGTTGTA+TGG | 0.410739 | 3_2:+16132573 | Msa0397160:CDS |
| TGATGATGCTAAGAAATCTA+AGG | 0.428938 | 3_2:-16131402 | None:intergenic |
| AGTCCATCATGGCAAATGTT+GGG | 0.431313 | 3_2:+16132474 | Msa0397160:CDS |
| GATGATTGTCACAATTCAAC+AGG | 0.431752 | 3_2:+16131469 | Msa0397160:CDS |
| AGGCGGAATCATTCAAATAA+AGG | 0.432962 | 3_2:+16133680 | Msa0397160:CDS |
| CAATGCTTGGAGGCTATGTT+AGG | 0.434598 | 3_2:+16132678 | Msa0397160:CDS |
| GACCCCAACATTTGCCATGA+TGG | 0.439454 | 3_2:-16132477 | None:intergenic |
| CACTATTGTCATTGTGTTGG+TGG | 0.449158 | 3_2:+16133616 | Msa0397160:CDS |
| TTTATCAAGTTCATGTGGAT+TGG | 0.450747 | 3_2:-16132511 | None:intergenic |
| AAATGTTGTGGGACAAAGAT+TGG | 0.455236 | 3_2:+16132711 | Msa0397160:CDS |
| TGGATTTGGTCCTGTTTACA+AGG | 0.480435 | 3_2:+16133957 | Msa0397160:CDS |
| GGCAAAGTTCCTAAATGTTG+TGG | 0.482031 | 3_2:+16132699 | Msa0397160:CDS |
| GTATGGCCATGCTGAGACAT+AGG | 0.500128 | 3_2:-16133832 | None:intergenic |
| GTTCCCAAAGAAATTATGGT+TGG | 0.512571 | 3_2:-16132442 | None:intergenic |
| GCAAAGTTCCTAAATGTTGT+GGG | 0.514442 | 3_2:+16132700 | Msa0397160:CDS |
| CCAATAAGTTGTATGGAATG+AGG | 0.514446 | 3_2:+16132580 | Msa0397160:CDS |
| TCTGTCGAATCCATATTAAA+GGG | 0.518635 | 3_2:-16133894 | None:intergenic |
| AAGTCCATCATGGCAAATGT+TGG | 0.535405 | 3_2:+16132473 | Msa0397160:CDS |
| GTAGCACTTGCAGCAGGGCA+AGG | 0.535814 | 3_2:+16133563 | Msa0397160:intron |
| CAAGCAATGTAATCAATGCT+TGG | 0.536756 | 3_2:+16132665 | Msa0397160:CDS |
| GGATATAATCATACAAGTGT+AGG | 0.539131 | 3_2:+16131571 | Msa0397160:intron |
| CAATAAGTTGTATGGAATGA+GGG | 0.543348 | 3_2:+16132581 | Msa0397160:CDS |
| CATCACTATTGTCATTGTGT+TGG | 0.543758 | 3_2:+16133613 | Msa0397160:CDS |
| GCACAATCACCAAATTATGT+AGG | 0.545554 | 3_2:+16131445 | Msa0397160:CDS |
| TAAAGGGATTATTGGGAGGT+CGG | 0.550851 | 3_2:-16133878 | None:intergenic |
| TTATGTAAACTAGGAGAAGG+TGG | 0.550896 | 3_2:+16133937 | Msa0397160:CDS |
| GTTGTATCTTCTTCATATGG+AGG | 0.554682 | 3_2:+16133660 | Msa0397160:CDS |
| GTATCTTCTTCATATGGAGG+CGG | 0.559255 | 3_2:+16133663 | Msa0397160:CDS |
| TGGATTGGTGCAGTGTAGTA+GGG | 0.565311 | 3_2:+16132632 | Msa0397160:intron |
| TATTGTCATTGTGTTGGTGG+TGG | 0.571552 | 3_2:+16133619 | Msa0397160:CDS |
| GCAATGTAATCAATGCTTGG+AGG | 0.573320 | 3_2:+16132668 | Msa0397160:CDS |
| ACCTCACAACAAGTCCATCA+TGG | 0.579042 | 3_2:+16132463 | Msa0397160:CDS |
| AATGACAATAGTGATGATCA+AGG | 0.587579 | 3_2:-16133606 | None:intergenic |
| TCAGCTTTATCAAGTTCATG+TGG | 0.588925 | 3_2:-16132516 | None:intergenic |
| GTACCTGAATTAGGCAAAGG+AGG | 0.596031 | 3_2:-16132812 | None:intergenic |
| GTCCATCATGGCAAATGTTG+GGG | 0.598466 | 3_2:+16132475 | Msa0397160:CDS |
| GATGCTAAGAAATCTAAGGA+TGG | 0.601101 | 3_2:-16131398 | None:intergenic |
| GTTGTGGGACAAAGATTGGT+TGG | 0.604003 | 3_2:+16132715 | Msa0397160:CDS |
| TCTCAGCATGGCCATACTCA+AGG | 0.607261 | 3_2:+16133838 | Msa0397160:CDS |
| AATGTACCTGAATTAGGCAA+AGG | 0.607999 | 3_2:-16132815 | None:intergenic |
| GCCATGATGGACTTGTTGTG+AGG | 0.620580 | 3_2:-16132464 | None:intergenic |
| GAATTATGTAAACTAGGAGA+AGG | 0.621990 | 3_2:+16133934 | Msa0397160:CDS |
| TCTTTGTAGCACTTGCAGCA+GGG | 0.626143 | 3_2:+16133558 | Msa0397160:intron |
| CATCAGATGAGAGCAATGAA+AGG | 0.631650 | 3_2:-16131534 | None:intergenic |
| GCATGGCCATACTCAAGGAG+AGG | 0.642415 | 3_2:+16133843 | Msa0397160:CDS |
| ACAATTCCTATGTCTCAGCA+TGG | 0.651103 | 3_2:+16133826 | Msa0397160:CDS |
| TATGGTCTCTATGATTGTAG+AGG | 0.653148 | 3_2:+16131616 | Msa0397160:CDS |
| ATATTAAAGGGATTATTGGG+AGG | 0.659653 | 3_2:-16133882 | None:intergenic |
| ACAGTGCTGAAGAATATCTG+AGG | 0.689630 | 3_2:-16131683 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATAATGAGTTATTAAA+CGG | - | chr3_2:16131856-16131875 | None:intergenic | 10.0% |
| !!! | TTTAATTTTATGACATTTTT+TGG | + | chr3_2:16132093-16132112 | Msa0397160:intron | 10.0% |
| !! | AATCTTATAAATATTATAAG+TGG | - | chr3_2:16133296-16133315 | None:intergenic | 10.0% |
| !!! | TTTTTTGTTTTTAATATAGA+TGG | + | chr3_2:16133790-16133809 | Msa0397160:intron | 10.0% |
| !! | ATTCAATTATATACTATAAG+TGG | + | chr3_2:16131792-16131811 | Msa0397160:intron | 15.0% |
| !! | TTAAGTAATGAAAAAAGATA+TGG | + | chr3_2:16132612-16132631 | Msa0397160:CDS | 15.0% |
| !! | CAAATTAAATCAATGATATA+TGG | - | chr3_2:16133020-16133039 | None:intergenic | 15.0% |
| !!! | CATATATCATTGATTTAATT+TGG | + | chr3_2:16133018-16133037 | Msa0397160:intron | 15.0% |
| !! | AAATACTAGTAATTCATAAA+AGG | + | chr3_2:16133442-16133461 | Msa0397160:intron | 15.0% |
| !! | GAATTATCAAAATTCTAGTA+GGG | - | chr3_2:16131776-16131795 | None:intergenic | 20.0% |
| !! | TGAATTATCAAAATTCTAGT+AGG | - | chr3_2:16131777-16131796 | None:intergenic | 20.0% |
| !! | TGAATAATGAATTATGTACT+TGG | - | chr3_2:16132031-16132050 | None:intergenic | 20.0% |
| !! | GTCATAAAATTATAAAACTG+CGG | - | chr3_2:16132149-16132168 | None:intergenic | 20.0% |
| !!! | ATTCAATTTTTGTTGTGATA+TGG | + | chr3_2:16132376-16132395 | Msa0397160:intron | 20.0% |
| !! | TAATGAAAAAAGATATGGAT+TGG | + | chr3_2:16132617-16132636 | Msa0397160:CDS | 20.0% |
| !! | AAAAAAAATGTACCTGAATT+AGG | - | chr3_2:16132824-16132843 | None:intergenic | 20.0% |
| !! | TTGTTACTATTTGAATTTCT+TGG | + | chr3_2:16132857-16132876 | Msa0397160:intron | 20.0% |
| !! | TAAATCAATGATATATGGAT+TGG | - | chr3_2:16133015-16133034 | None:intergenic | 20.0% |
| !!! | ATCATTGATTTAATTTGGTT+TGG | + | chr3_2:16133023-16133042 | Msa0397160:intron | 20.0% |
| !!! | ATCTTGTTTTTTTTTAGAAG+TGG | - | chr3_2:16133051-16133070 | None:intergenic | 20.0% |
| !!! | AGTAATTCATAAAAGGTATT+TGG | + | chr3_2:16133449-16133468 | Msa0397160:intron | 20.0% |
| !! | TGTATATATGAAATGAGATT+TGG | + | chr3_2:16133507-16133526 | Msa0397160:intron | 20.0% |
| !!! | ACATAATTCTGAAAAGTTAT+TGG | - | chr3_2:16133923-16133942 | None:intergenic | 20.0% |
| !!! | TTTTCAGAATTATGTAAACT+AGG | + | chr3_2:16133928-16133947 | Msa0397160:CDS | 20.0% |
| !!! | TGCAATTGATTTTGTGAAAA+GGG | - | chr3_2:16131428-16131447 | None:intergenic | 25.0% |
| ! | ATAAGTGGATAAAGTTATTC+CGG | + | chr3_2:16131807-16131826 | Msa0397160:intron | 25.0% |
| !!! | CTCTCATTCAGATATTTTTT+TGG | - | chr3_2:16132320-16132339 | None:intergenic | 25.0% |
| ! | AAATATCTGAATGAGAGATT+TGG | + | chr3_2:16132323-16132342 | Msa0397160:intron | 25.0% |
| ! | TATTCCAACCATAATTTCTT+TGG | + | chr3_2:16132438-16132457 | Msa0397160:CDS | 25.0% |
| ! | ATTCCAACCATAATTTCTTT+GGG | + | chr3_2:16132439-16132458 | Msa0397160:CDS | 25.0% |
| ! | TTTAATAAGTGAAGCTACTT+TGG | + | chr3_2:16132554-16132573 | Msa0397160:CDS | 25.0% |
| ! | ATATGCTTTATCAAACAACT+TGG | - | chr3_2:16132753-16132772 | None:intergenic | 25.0% |
| ! | AAATTAAAGAGTAGTAGAGA+AGG | + | chr3_2:16133101-16133120 | Msa0397160:intron | 25.0% |
| ! | TTTATATGAGTGTGCTTAAA+CGG | + | chr3_2:16133341-16133360 | Msa0397160:intron | 25.0% |
| ! | TCCATATTAAAGGGATTATT+GGG | - | chr3_2:16133888-16133907 | None:intergenic | 25.0% |
| ! | ATCCATATTAAAGGGATTAT+TGG | - | chr3_2:16133889-16133908 | None:intergenic | 25.0% |
| ! | AAAAAACATACCTTGTAAAC+AGG | - | chr3_2:16133970-16133989 | None:intergenic | 25.0% |
| !!! | ACAAGGTATGTTTTTTCTTT+TGG | + | chr3_2:16133974-16133993 | Msa0397160:intron | 25.0% |
| ! | TTTAGACAAAATTATCTCTG+TGG | + | chr3_2:16134027-16134046 | Msa0397160:intron | 25.0% |
| ! | GTAGTATTAACAAACATTAG+AGG | - | chr3_2:16134054-16134073 | None:intergenic | 25.0% |
| ! | TGATGATGCTAAGAAATCTA+AGG | - | chr3_2:16131405-16131424 | None:intergenic | 30.0% |
| !! | GTGCAATTGATTTTGTGAAA+AGG | - | chr3_2:16131429-16131448 | None:intergenic | 30.0% |
| CAATCATCACCTACATAATT+TGG | - | chr3_2:16131457-16131476 | None:intergenic | 30.0% | |
| TGAAAGGACTTTATTAAGGT+TGG | - | chr3_2:16131521-16131540 | None:intergenic | 30.0% | |
| GCAATGAAAGGACTTTATTA+AGG | - | chr3_2:16131525-16131544 | None:intergenic | 30.0% | |
| TCTGATGCTATTGTAAGTAA+AGG | + | chr3_2:16131550-16131569 | Msa0397160:intron | 30.0% | |
| GGATATAATCATACAAGTGT+AGG | + | chr3_2:16131571-16131590 | Msa0397160:intron | 30.0% | |
| TAAGTGGATAAAGTTATTCC+GGG | + | chr3_2:16131808-16131827 | Msa0397160:intron | 30.0% | |
| !!! | TTTTTTTTCCGCAGTTGAAT+CGG | + | chr3_2:16132206-16132225 | Msa0397160:intron | 30.0% |
| ATGCTTATGTTGAGATTAAG+TGG | + | chr3_2:16132238-16132257 | Msa0397160:intron | 30.0% | |
| TCTAAATATGTCTCTTGAGT+AGG | + | chr3_2:16132415-16132434 | Msa0397160:intron | 30.0% | |
| TTTATCAAGTTCATGTGGAT+TGG | - | chr3_2:16132514-16132533 | None:intergenic | 30.0% | |
| CAATAAGTTGTATGGAATGA+GGG | + | chr3_2:16132581-16132600 | Msa0397160:CDS | 30.0% | |
| TATACATTGCTAGTCAAGAA+GGG | - | chr3_2:16132932-16132951 | None:intergenic | 30.0% | |
| CTAGCAATGTATAGTTATCA+AGG | + | chr3_2:16132939-16132958 | Msa0397160:intron | 30.0% | |
| TCACTTAAGAGATAAAGACA+AGG | + | chr3_2:16133258-16133277 | Msa0397160:intron | 30.0% | |
| AAGGAGATAAAATCTTGCTT+AGG | - | chr3_2:16133385-16133404 | None:intergenic | 30.0% | |
| ! | ATTCATACTTTTGAGCCTTT+AGG | - | chr3_2:16133415-16133434 | None:intergenic | 30.0% |
| AATGACAATAGTGATGATCA+AGG | - | chr3_2:16133609-16133628 | None:intergenic | 30.0% | |
| GTTGTTGTATCTTCTTCATA+TGG | + | chr3_2:16133657-16133676 | Msa0397160:CDS | 30.0% | |
| !!! | GACATAGGAATTGTTTTTGA+TGG | - | chr3_2:16133820-16133839 | None:intergenic | 30.0% |
| ATATTAAAGGGATTATTGGG+AGG | - | chr3_2:16133885-16133904 | None:intergenic | 30.0% | |
| TCCCAATAATCCCTTTAATA+TGG | + | chr3_2:16133884-16133903 | Msa0397160:CDS | 30.0% | |
| TCTGTCGAATCCATATTAAA+GGG | - | chr3_2:16133897-16133916 | None:intergenic | 30.0% | |
| GAATTATGTAAACTAGGAGA+AGG | + | chr3_2:16133934-16133953 | Msa0397160:CDS | 30.0% | |
| GATGCTAAGAAATCTAAGGA+TGG | - | chr3_2:16131401-16131420 | None:intergenic | 35.0% | |
| GCACAATCACCAAATTATGT+AGG | + | chr3_2:16131445-16131464 | Msa0397160:CDS | 35.0% | |
| GATGATTGTCACAATTCAAC+AGG | + | chr3_2:16131469-16131488 | Msa0397160:CDS | 35.0% | |
| TATGGTCTCTATGATTGTAG+AGG | + | chr3_2:16131616-16131635 | Msa0397160:CDS | 35.0% | |
| ATAACAGCTGAAGCTCTATT+AGG | - | chr3_2:16131709-16131728 | None:intergenic | 35.0% | |
| ATAGAGCTTCAGCTGTTATA+TGG | + | chr3_2:16131710-16131729 | Msa0397160:CDS | 35.0% | |
| AAGTGGAATAACTCACTTCA+TGG | + | chr3_2:16132255-16132274 | Msa0397160:intron | 35.0% | |
| GTTCCCAAAGAAATTATGGT+TGG | - | chr3_2:16132445-16132464 | None:intergenic | 35.0% | |
| TGAGGTTCCCAAAGAAATTA+TGG | - | chr3_2:16132449-16132468 | None:intergenic | 35.0% | |
| ! | TCAGCTTTATCAAGTTCATG+TGG | - | chr3_2:16132519-16132538 | None:intergenic | 35.0% |
| TTGGAGACCAATAAGTTGTA+TGG | + | chr3_2:16132573-16132592 | Msa0397160:CDS | 35.0% | |
| CCTCATTCCATACAACTTAT+TGG | - | chr3_2:16132583-16132602 | None:intergenic | 35.0% | |
| CCAATAAGTTGTATGGAATG+AGG | + | chr3_2:16132580-16132599 | Msa0397160:CDS | 35.0% | |
| GATTACATTGCTTGTCAGTA+AGG | - | chr3_2:16132659-16132678 | None:intergenic | 35.0% | |
| CAAGCAATGTAATCAATGCT+TGG | + | chr3_2:16132665-16132684 | Msa0397160:CDS | 35.0% | |
| GCAAAGTTCCTAAATGTTGT+GGG | + | chr3_2:16132700-16132719 | Msa0397160:CDS | 35.0% | |
| ATCTTTGTCCCACAACATTT+AGG | - | chr3_2:16132711-16132730 | None:intergenic | 35.0% | |
| AAATGTTGTGGGACAAAGAT+TGG | + | chr3_2:16132711-16132730 | Msa0397160:CDS | 35.0% | |
| AATGTACCTGAATTAGGCAA+AGG | - | chr3_2:16132818-16132837 | None:intergenic | 35.0% | |
| CTATACATTGCTAGTCAAGA+AGG | - | chr3_2:16132933-16132952 | None:intergenic | 35.0% | |
| ! | GAGATAAAGACAAGGTTTTG+TGG | + | chr3_2:16133266-16133285 | Msa0397160:intron | 35.0% |
| ATCTCCTTAACATGTCCTAA+AGG | + | chr3_2:16133397-16133416 | Msa0397160:intron | 35.0% | |
| CATCACTATTGTCATTGTGT+TGG | + | chr3_2:16133613-16133632 | Msa0397160:CDS | 35.0% | |
| GTTGTATCTTCTTCATATGG+AGG | + | chr3_2:16133660-16133679 | Msa0397160:CDS | 35.0% | |
| AGGCGGAATCATTCAAATAA+AGG | + | chr3_2:16133680-16133699 | Msa0397160:CDS | 35.0% | |
| CTCTGTCGAATCCATATTAA+AGG | - | chr3_2:16133898-16133917 | None:intergenic | 35.0% | |
| TTATGTAAACTAGGAGAAGG+TGG | + | chr3_2:16133937-16133956 | Msa0397160:CDS | 35.0% | |
| CATCAGATGAGAGCAATGAA+AGG | - | chr3_2:16131537-16131556 | None:intergenic | 40.0% | |
| ! | AACACAGTTGATGCTGTCTA+TGG | + | chr3_2:16131598-16131617 | Msa0397160:CDS | 40.0% |
| GATTGTAGAGGTGATGTTAC+AGG | + | chr3_2:16131628-16131647 | Msa0397160:CDS | 40.0% | |
| ! | ACAGTGCTGAAGAATATCTG+AGG | - | chr3_2:16131686-16131705 | None:intergenic | 40.0% |
| ! | GGTACAACTTTTGCATTCTC+AGG | + | chr3_2:16131731-16131750 | Msa0397160:CDS | 40.0% |
| TGCATTCTCAGGTACATCTT+TGG | + | chr3_2:16131742-16131761 | Msa0397160:intron | 40.0% | |
| GCATTCTCAGGTACATCTTT+GGG | + | chr3_2:16131743-16131762 | Msa0397160:intron | 40.0% | |
| !! | GAATTTCACCGATTCAACTG+CGG | - | chr3_2:16132217-16132236 | None:intergenic | 40.0% |
| AAGTCCATCATGGCAAATGT+TGG | + | chr3_2:16132473-16132492 | Msa0397160:CDS | 40.0% | |
| AGTCCATCATGGCAAATGTT+GGG | + | chr3_2:16132474-16132493 | Msa0397160:CDS | 40.0% | |
| GCAATGTAATCAATGCTTGG+AGG | + | chr3_2:16132668-16132687 | Msa0397160:CDS | 40.0% | |
| GGCAAAGTTCCTAAATGTTG+TGG | + | chr3_2:16132699-16132718 | Msa0397160:CDS | 40.0% | |
| ! | TTGCTAGTCAAGAAGGGTTT+TGG | - | chr3_2:16132926-16132945 | None:intergenic | 40.0% |
| !! | TGAGCCTTTAGGACATGTTA+AGG | - | chr3_2:16133404-16133423 | None:intergenic | 40.0% |
| CACTATTGTCATTGTGTTGG+TGG | + | chr3_2:16133616-16133635 | Msa0397160:CDS | 40.0% | |
| ! | TATTGTCATTGTGTTGGTGG+TGG | + | chr3_2:16133619-16133638 | Msa0397160:CDS | 40.0% |
| GTATCTTCTTCATATGGAGG+CGG | + | chr3_2:16133663-16133682 | Msa0397160:CDS | 40.0% | |
| ACAATTCCTATGTCTCAGCA+TGG | + | chr3_2:16133826-16133845 | Msa0397160:CDS | 40.0% | |
| ATGAATCCTCTCCTTGAGTA+TGG | - | chr3_2:16133852-16133871 | None:intergenic | 40.0% | |
| TAAAGGGATTATTGGGAGGT+CGG | - | chr3_2:16133881-16133900 | None:intergenic | 40.0% | |
| ! | AAACTAGGAGAAGGTGGATT+TGG | + | chr3_2:16133943-16133962 | Msa0397160:CDS | 40.0% |
| ! | TGGATTTGGTCCTGTTTACA+AGG | + | chr3_2:16133957-16133976 | Msa0397160:CDS | 40.0% |
| GCTCATCTCAGAATTTCTCC+CGG | - | chr3_2:16131829-16131848 | None:intergenic | 45.0% | |
| ACCTCACAACAAGTCCATCA+TGG | + | chr3_2:16132463-16132482 | Msa0397160:CDS | 45.0% | |
| GTCCATCATGGCAAATGTTG+GGG | + | chr3_2:16132475-16132494 | Msa0397160:CDS | 45.0% | |
| !! | ATGGATTGGTGCAGTGTAGT+AGG | + | chr3_2:16132631-16132650 | Msa0397160:intron | 45.0% |
| !! | TGGATTGGTGCAGTGTAGTA+GGG | + | chr3_2:16132632-16132651 | Msa0397160:intron | 45.0% |
| CAATGCTTGGAGGCTATGTT+AGG | + | chr3_2:16132678-16132697 | Msa0397160:CDS | 45.0% | |
| GTTGTGGGACAAAGATTGGT+TGG | + | chr3_2:16132715-16132734 | Msa0397160:CDS | 45.0% | |
| TCTCCTCCTTTGCCTAATTC+AGG | + | chr3_2:16132809-16132828 | Msa0397160:CDS | 45.0% | |
| GTACCTGAATTAGGCAAAGG+AGG | - | chr3_2:16132815-16132834 | None:intergenic | 45.0% | |
| TTCTTTGTAGCACTTGCAGC+AGG | + | chr3_2:16133557-16133576 | Msa0397160:intron | 45.0% | |
| TCTTTGTAGCACTTGCAGCA+GGG | + | chr3_2:16133558-16133577 | Msa0397160:intron | 45.0% | |
| !!! | TTTTTAATAAATATTAATCA+AGG | + | chr3_2:16131989-16132008 | Msa0397160:intron | 5.0% |
| !!! | TTTTAATAAATATTAATCAA+GGG | + | chr3_2:16131990-16132009 | Msa0397160:intron | 5.0% |
| !! | AATTAAGAATTAAATATTTA+AGG | + | chr3_2:16133203-16133222 | Msa0397160:intron | 5.0% |
| !! | GCCATGATGGACTTGTTGTG+AGG | - | chr3_2:16132467-16132486 | None:intergenic | 50.0% |
| GACCCCAACATTTGCCATGA+TGG | - | chr3_2:16132480-16132499 | None:intergenic | 50.0% | |
| GTATGGCCATGCTGAGACAT+AGG | - | chr3_2:16133835-16133854 | None:intergenic | 50.0% | |
| TCTCAGCATGGCCATACTCA+AGG | + | chr3_2:16133838-16133857 | Msa0397160:CDS | 50.0% | |
| GCATGGCCATACTCAAGGAG+AGG | + | chr3_2:16133843-16133862 | Msa0397160:CDS | 55.0% | |
| GTAGCACTTGCAGCAGGGCA+AGG | + | chr3_2:16133563-16133582 | Msa0397160:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 16131373 | 16134113 | 16131373 | ID=Msa0397160;Name=Msa0397160 |
| chr3_2 | mRNA | 16131373 | 16134113 | 16131373 | ID=Msa0397160-mRNA-1;Parent=Msa0397160;Name=Msa0397160-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0.28|0|0.87|0.42|0.37|8|0|353 |
| chr3_2 | exon | 16131373 | 16131565 | 16131373 | ID=Msa0397160-mRNA-1:exon:3654;Parent=Msa0397160-mRNA-1 |
| chr3_2 | exon | 16131572 | 16131752 | 16131572 | ID=Msa0397160-mRNA-1:exon:3655;Parent=Msa0397160-mRNA-1 |
| chr3_2 | exon | 16132437 | 16132638 | 16132437 | ID=Msa0397160-mRNA-1:exon:3656;Parent=Msa0397160-mRNA-1 |
| chr3_2 | exon | 16132645 | 16132753 | 16132645 | ID=Msa0397160-mRNA-1:exon:3657;Parent=Msa0397160-mRNA-1 |
| chr3_2 | exon | 16132768 | 16132830 | 16132768 | ID=Msa0397160-mRNA-1:exon:3658;Parent=Msa0397160-mRNA-1 |
| chr3_2 | exon | 16133567 | 16133701 | 16133567 | ID=Msa0397160-mRNA-1:exon:3659;Parent=Msa0397160-mRNA-1 |
| chr3_2 | exon | 16133809 | 16133978 | 16133809 | ID=Msa0397160-mRNA-1:exon:3660;Parent=Msa0397160-mRNA-1 |
| chr3_2 | exon | 16134105 | 16134113 | 16134105 | ID=Msa0397160-mRNA-1:exon:3661;Parent=Msa0397160-mRNA-1 |
| chr3_2 | CDS | 16131373 | 16131565 | 16131373 | ID=Msa0397160-mRNA-1:cds;Parent=Msa0397160-mRNA-1 |
| chr3_2 | CDS | 16131572 | 16131752 | 16131572 | ID=Msa0397160-mRNA-1:cds;Parent=Msa0397160-mRNA-1 |
| chr3_2 | CDS | 16132437 | 16132638 | 16132437 | ID=Msa0397160-mRNA-1:cds;Parent=Msa0397160-mRNA-1 |
| chr3_2 | CDS | 16132645 | 16132753 | 16132645 | ID=Msa0397160-mRNA-1:cds;Parent=Msa0397160-mRNA-1 |
| chr3_2 | CDS | 16132768 | 16132830 | 16132768 | ID=Msa0397160-mRNA-1:cds;Parent=Msa0397160-mRNA-1 |
| chr3_2 | CDS | 16133567 | 16133701 | 16133567 | ID=Msa0397160-mRNA-1:cds;Parent=Msa0397160-mRNA-1 |
| chr3_2 | CDS | 16133809 | 16133978 | 16133809 | ID=Msa0397160-mRNA-1:cds;Parent=Msa0397160-mRNA-1 |
| chr3_2 | CDS | 16134105 | 16134113 | 16134105 | ID=Msa0397160-mRNA-1:cds;Parent=Msa0397160-mRNA-1 |
| Gene Sequence |
| Protein sequence |
