AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0153510

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0153510 MtrunA17_Chr1g0148391 98.742 477 5 1 1 477 1 476 0.0 963
Msa0153510 MtrunA17_Chr3g0138741 75.630 476 115 1 2 476 6 481 0.0 756
Msa0153510 MtrunA17_Chr6g0461601 55.602 482 205 5 3 477 2 481 0.0 525
Msa0153510 MtrunA17_Chr4g0069801 57.018 456 192 4 1 453 1 455 0.0 523
Msa0153510 MtrunA17_Chr2g0306311 50.000 504 213 7 9 474 9 511 5.17e-177 506
Msa0153510 MtrunA17_Chr4g0062771 51.042 480 227 4 4 476 8 486 2.21e-176 504
Msa0153510 MtrunA17_Chr7g0253091 53.878 477 211 5 4 476 3 474 2.23e-173 496
Msa0153510 MtrunA17_Chr8g0383311 51.029 486 222 6 5 477 14 496 2.72e-172 494
Msa0153510 MtrunA17_Chr4g0076581 52.331 472 218 4 10 476 14 483 1.11e-167 482
Msa0153510 MtrunA17_Chr2g0290821 53.630 427 194 2 27 451 28 452 2.14e-163 471
Msa0153510 MtrunA17_Chr3g0129341 48.739 476 232 6 1 467 1 473 8.50e-163 469
Msa0153510 MtrunA17_Chr3g0105981 46.455 409 215 4 26 434 26 430 2.48e-129 382
Msa0153510 MtrunA17_Chr4g0034901 34.764 466 269 17 5 449 8 459 9.42e-70 229
Msa0153510 MtrunA17_Chr8g0339191 33.263 472 276 17 8 453 4 462 3.72e-68 225
Msa0153510 MtrunA17_Chr1g0161011 34.802 454 268 16 11 449 5 445 1.54e-67 224
Msa0153510 MtrunA17_Chr4g0046311 33.772 456 274 17 8 443 4 451 5.91e-67 222
Msa0153510 MtrunA17_Chr8g0389741 32.494 437 269 14 27 449 28 452 2.92e-63 213
Msa0153510 MtrunA17_Chr6g0487261 31.590 459 286 14 6 449 9 454 5.62e-63 213
Msa0153510 MtrunA17_Chr8g0378621 30.983 468 284 15 1 449 1 448 1.93e-62 211
Msa0153510 MtrunA17_Chr3g0144531 32.569 436 272 15 27 449 28 454 8.23e-60 203
Msa0153510 MtrunA17_Chr5g0434591 32.599 454 275 17 12 449 6 444 1.81e-59 203
Msa0153510 MtrunA17_Chr1g0177171 30.472 466 276 15 23 449 34 490 5.46e-59 202
Msa0153510 MtrunA17_Chr3g0121271 29.654 462 296 16 1 449 1 446 6.08e-59 201
Msa0153510 MtrunA17_Chr3g0110371 31.429 455 283 15 10 449 5 445 2.60e-58 200
Msa0153510 MtrunA17_Chr5g0439251 32.823 457 260 18 20 443 18 460 2.50e-57 197
Msa0153510 MtrunA17_Chr7g0234821 30.769 442 276 16 28 449 27 458 1.17e-56 194
Msa0153510 MtrunA17_Chr4g0003281 37.069 348 198 11 10 344 18 357 7.21e-56 191
Msa0153510 MtrunA17_Chr1g0146831 38.081 344 184 15 12 344 16 341 1.69e-54 187
Msa0153510 MtrunA17_Chr7g0250301 36.111 324 186 10 27 344 8 316 5.82e-54 183
Msa0153510 MtrunA17_Chr4g0043851 33.903 351 214 13 7 348 11 352 1.52e-53 185
Msa0153510 MtrunA17_Chr7g0223961 33.258 445 266 19 20 447 16 446 2.05e-53 186
Msa0153510 MtrunA17_Chr1g0189111 35.347 331 194 12 23 344 27 346 8.25e-53 183
Msa0153510 MtrunA17_Chr4g0038941 36.842 323 182 13 27 345 52 356 1.78e-50 175
Msa0153510 MtrunA17_Chr2g0294601 32.951 349 220 8 10 354 41 379 4.48e-50 175
Msa0153510 MtrunA17_Chr4g0075031 29.655 435 281 14 27 449 45 466 4.59e-50 178
Msa0153510 MtrunA17_Chr4g0026321 33.516 364 212 15 18 369 18 363 4.70e-50 175
Msa0153510 MtrunA17_Chr2g0294591 33.133 332 213 6 22 352 25 348 2.50e-49 172
Msa0153510 MtrunA17_Chr4g0043511 30.921 456 268 15 27 449 62 503 3.39e-49 176
Msa0153510 MtrunA17_Chr3g0119541 35.780 327 192 10 27 344 26 343 5.18e-49 172
Msa0153510 MtrunA17_Chr4g0064021 35.258 329 195 10 25 344 24 343 9.42e-49 172
Msa0153510 MtrunA17_Chr4g0039071 33.750 320 201 7 27 344 25 335 1.73e-48 171
Msa0153510 MtrunA17_Chr1g0174261 34.932 292 179 7 56 345 1 283 1.47e-46 165
Msa0153510 MtrunA17_Chr2g0285901 33.429 350 211 13 8 346 3 341 3.03e-46 165
Msa0153510 MtrunA17_Chr2g0321511 32.682 358 210 16 9 350 7 349 8.49e-46 164
Msa0153510 MtrunA17_Chr4g0039021 34.323 303 183 9 47 345 1 291 9.81e-44 155
Msa0153510 MtrunA17_Chr4g0038981 31.871 342 210 10 12 345 1 327 3.47e-43 155
Msa0153510 MtrunA17_Chr4g0038961 32.448 339 213 8 8 345 4 327 4.01e-43 155
Msa0153510 MtrunA17_Chr1g0155001 31.661 319 203 9 27 337 24 335 3.39e-41 152
Msa0153510 MtrunA17_Chr4g0038971 30.678 339 219 9 8 345 4 327 1.32e-40 148
Msa0153510 MtrunA17_Chr7g0250321 33.904 292 176 8 8 294 9 288 2.99e-40 146
Msa0153510 MtrunA17_Chr4g0039011 31.875 320 201 10 27 344 42 346 1.23e-39 146
Msa0153510 MtrunA17_Chr5g0436361 28.896 308 197 12 44 342 54 348 8.41e-28 114
Msa0153510 MtrunA17_Chr2g0294581 37.975 158 88 2 22 179 71 218 1.42e-22 97.4
Msa0153510 MtrunA17_Chr4g0018861 33.333 102 63 3 245 345 77 174 3.04e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0153510 AT4G31140.1 66.949 472 154 2 6 477 7 476 0.0 672
Msa0153510 AT5G58090.1 67.366 429 139 1 27 454 22 450 0.0 611
Msa0153510 AT5G20870.1 56.769 458 185 5 8 455 11 465 2.90e-176 504
Msa0153510 AT3G24330.1 53.043 460 209 5 8 462 20 477 1.79e-172 494
Msa0153510 AT1G64760.1 55.530 434 186 5 24 453 22 452 2.20e-166 478
Msa0153510 AT1G64760.2 55.530 434 186 5 24 453 22 452 2.20e-166 478
Msa0153510 AT5G18220.1 51.452 482 213 8 8 476 15 488 4.66e-166 478
Msa0153510 AT2G19440.2 54.018 448 199 5 10 453 4 448 6.39e-166 477
Msa0153510 AT2G19440.1 54.018 448 199 5 10 453 4 448 6.39e-166 477
Msa0153510 AT3G04010.1 54.214 439 195 4 24 458 30 466 7.08e-166 477
Msa0153510 AT5G64790.1 50.557 449 217 3 11 457 14 459 2.24e-163 471
Msa0153510 AT4G17180.1 50.333 451 212 5 3 451 2 442 2.80e-154 447
Msa0153510 AT5G58480.1 43.807 436 239 5 24 458 23 453 1.92e-128 381
Msa0153510 AT2G05790.1 34.423 459 258 16 23 449 21 468 6.41e-69 228
Msa0153510 AT2G01630.1 34.318 440 254 15 27 449 23 444 1.13e-68 228
Msa0153510 AT4G26830.1 32.450 453 280 14 12 449 10 451 3.40e-68 225
Msa0153510 AT2G01630.3 34.713 435 247 16 27 443 23 438 5.75e-68 224
Msa0153510 AT4G26830.2 32.955 440 269 14 25 449 27 455 1.65e-67 223
Msa0153510 AT5G55180.1 31.519 441 277 13 25 449 25 456 1.22e-64 216
Msa0153510 AT5G55180.2 31.724 435 272 13 25 443 25 450 1.18e-63 214
Msa0153510 AT5G56590.1 31.746 441 274 15 25 449 24 453 4.99e-62 210
Msa0153510 AT3G07320.1 32.658 444 269 17 25 449 23 455 7.86e-61 206
Msa0153510 AT3G55430.1 34.086 443 256 22 24 449 26 449 2.72e-60 204
Msa0153510 AT1G66250.1 32.110 436 268 14 27 449 32 452 3.54e-59 203
Msa0153510 AT5G24318.1 31.385 462 282 19 6 450 13 456 5.22e-58 198
Msa0153510 AT3G57270.1 36.025 322 195 7 25 344 25 337 7.21e-58 195
Msa0153510 AT1G11820.2 29.841 439 275 14 27 449 44 465 1.22e-57 199
Msa0153510 AT4G14080.1 30.872 447 270 17 27 449 42 473 1.78e-56 195
Msa0153510 AT5G24318.2 31.429 455 277 19 6 443 13 449 2.68e-56 194
Msa0153510 AT1G11820.3 29.792 433 271 14 27 443 44 459 5.66e-56 194
Msa0153510 AT3G23770.1 31.333 450 267 18 27 449 37 471 6.48e-56 193
Msa0153510 AT3G13560.4 30.717 446 261 15 27 449 26 446 2.23e-55 192
Msa0153510 AT3G13560.1 30.717 446 261 15 27 449 26 446 2.23e-55 192
Msa0153510 AT3G13560.2 30.717 446 261 15 27 449 26 446 2.23e-55 192
Msa0153510 AT3G13560.5 30.717 446 261 15 27 449 26 446 2.23e-55 192
Msa0153510 AT3G13560.3 30.717 446 261 15 27 449 26 446 2.23e-55 192
Msa0153510 AT4G29360.1 29.091 495 298 16 7 460 4 486 2.14e-54 191
Msa0153510 AT2G16230.1 32.037 437 271 14 27 449 25 449 2.16e-54 190
Msa0153510 AT3G57260.1 35.398 339 202 10 8 344 13 336 5.73e-54 184
Msa0153510 AT4G29360.2 29.150 494 297 16 8 460 15 496 6.24e-54 189
Msa0153510 AT3G57260.2 35.398 339 202 10 8 344 29 352 9.86e-54 184
Msa0153510 AT4G34480.1 32.118 439 265 15 27 449 26 447 1.70e-53 187
Msa0153510 AT2G01630.2 33.687 377 216 14 27 388 23 380 3.49e-53 184
Msa0153510 AT3G15800.1 34.615 338 208 9 14 344 30 361 2.34e-52 182
Msa0153510 AT2G39640.1 33.187 455 266 22 10 451 15 444 2.80e-52 185
Msa0153510 AT4G16260.1 32.184 348 221 9 9 352 4 340 6.01e-52 179
Msa0153510 AT4G18340.2 31.880 367 227 13 6 361 13 367 1.83e-51 179
Msa0153510 AT4G18340.1 31.880 367 227 13 6 361 13 367 4.08e-51 179
Msa0153510 AT4G16260.2 33.227 313 196 8 42 352 10 311 6.48e-50 173
Msa0153510 AT1G33220.1 34.472 322 193 10 6 320 12 322 2.62e-49 172
Msa0153510 AT1G30080.2 31.034 348 219 12 8 344 15 352 1.05e-48 172
Msa0153510 AT1G30080.1 31.034 348 219 12 8 344 15 352 1.17e-48 172
Msa0153510 AT5G20330.1 34.091 352 207 12 4 344 7 344 2.05e-48 170
Msa0153510 AT5G24318.4 33.333 348 211 14 6 346 13 346 2.82e-48 170
Msa0153510 AT5G20390.1 31.884 345 213 11 8 344 13 343 1.99e-47 167
Msa0153510 AT2G27500.2 32.927 328 202 11 26 344 28 346 2.25e-47 168
Msa0153510 AT5G42720.1 35.196 358 209 14 27 373 26 371 2.44e-47 169
Msa0153510 AT2G27500.1 32.927 328 202 11 26 344 28 346 3.52e-47 168
Msa0153510 AT1G32860.1 33.435 329 198 12 27 344 29 347 4.70e-47 168
Msa0153510 AT2G26600.1 33.030 330 203 10 24 344 31 351 8.76e-47 167
Msa0153510 AT5G20340.1 34.154 325 193 11 27 344 43 353 2.52e-46 164
Msa0153510 AT3G57240.1 33.022 321 197 7 24 342 32 336 3.16e-45 161
Msa0153510 AT5G42100.2 33.714 350 205 14 9 346 14 348 2.80e-44 161
Msa0153510 AT5G42100.1 33.714 350 205 14 9 346 14 348 3.23e-44 160
Msa0153510 AT4G34480.2 35.737 319 189 10 27 337 26 336 2.64e-43 157
Msa0153510 AT1G11820.1 29.545 352 219 11 27 365 44 379 1.71e-42 155
Msa0153510 AT3G61810.1 31.212 330 200 10 27 344 55 369 1.55e-41 152
Msa0153510 AT1G77780.1 29.345 351 229 8 8 351 1 339 3.95e-39 145
Msa0153510 AT5G20560.1 29.851 335 216 9 6 334 13 334 8.40e-39 144
Msa0153510 AT1G77790.1 29.859 355 224 12 1 344 1 341 1.13e-36 138
Msa0153510 AT2G27500.3 32.727 275 167 11 77 342 1 266 8.31e-35 132
Msa0153510 AT4G34480.3 31.232 349 209 14 117 449 3 336 1.32e-34 134
Msa0153510 AT3G46570.1 32.759 348 207 14 10 346 13 344 1.90e-34 132
Msa0153510 AT5G24318.3 29.358 327 205 13 140 450 1 317 1.36e-33 129
Msa0153510 AT3G55780.1 26.426 333 218 10 27 344 31 351 3.06e-33 130
Msa0153510 AT2G26600.2 32.707 266 161 10 88 344 1 257 1.15e-31 123

Find 131 sgRNAs with CRISPR-Local

Find 243 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTAAATACTATTAAGATTC+TGG 0.143368 1_4:-16882102 Msa0153510:three_prime_UTR
TTCAAAGCATCAAGAATATT+TGG 0.148229 1_4:+16884896 None:intergenic
TGCATAGTCGACTGGAAAAT+TGG 0.169551 1_4:+16882894 None:intergenic
ACCGATCTCTCCAACAATTA+TGG 0.179022 1_4:+16882753 None:intergenic
ATCTTTCCGTTGTCGTTTAA+AGG 0.202599 1_4:+16882850 None:intergenic
CGCTCTTATAAAAGCTGGTT+TGG 0.202719 1_4:-16883103 Msa0153510:CDS
GACTAGTGCAGTCTGCATTT+TGG 0.234926 1_4:+16882374 None:intergenic
GGATAAATGTTCACGGTAAA+TGG 0.262811 1_4:+16882940 None:intergenic
AAATGATTTGCTTTATACTA+TGG 0.263703 1_4:-16884840 Msa0153510:CDS
TTTGAAGAAATCTGGTATTC+AGG 0.267033 1_4:-16884879 Msa0153510:CDS
TCTCAATGGAGTCCCCTTTC+CGG 0.272611 1_4:+16882651 None:intergenic
GACAAAATTTCCTTAAAATC+TGG 0.273106 1_4:-16881987 Msa0153510:three_prime_UTR
CTTGATGCTTTGAAGAAATC+TGG 0.297702 1_4:-16884887 Msa0153510:CDS
TTTCAAAATACACCACTTCT+TGG 0.304045 1_4:+16882450 None:intergenic
CTAACTATGATACTCTAGTA+TGG 0.317827 1_4:-16882807 Msa0153510:CDS
CTTGGTCATTGAATTCTTGA+TGG 0.320126 1_4:-16885101 Msa0153510:exon
AATCAGTTTGGATCATGATT+TGG 0.323082 1_4:+16882191 None:intergenic
TTCTCCTCGCGGAATCAGTT+TGG 0.344088 1_4:+16882179 None:intergenic
GAAATCTGGTATTCAGGTTA+TGG 0.346498 1_4:-16884873 Msa0153510:CDS
TCTTCATAAAGACTAATAAA+AGG 0.350618 1_4:+16882919 None:intergenic
ATAGAGACAGAAAAGGTAAT+TGG 0.352927 1_4:+16885375 None:intergenic
GTGCAACTTGATCACTGTTC+AGG 0.355760 1_4:+16882416 None:intergenic
CAGGTAACTTTGAACGTCAT+TGG 0.361509 1_4:-16882567 Msa0153510:CDS
AGGTAACTTTGAACGTCATT+GGG 0.365853 1_4:-16882566 Msa0153510:CDS
AAAAGATAAACAGATCTCTT+TGG 0.366906 1_4:+16885278 None:intergenic
CATCTGGTGGAGTAGATATC+AGG 0.372328 1_4:-16884760 Msa0153510:intron
CCGATCTCTCCAACAATTAT+GGG 0.378662 1_4:+16882754 None:intergenic
CCAATGGTGAGTTGGTATTT+CGG 0.383764 1_4:+16882520 None:intergenic
GTTTCAGCTCATGTTTCATC+TGG 0.386117 1_4:-16884776 Msa0153510:CDS
ACCCTTCCGATGGCGACTTT+AGG 0.386656 1_4:-16883020 Msa0153510:CDS
GCTTGGGTGAAGGACTAAAA+TGG 0.392891 1_4:+16885195 None:intergenic
TAGCAACTTAAAATAATTGT+TGG 0.399091 1_4:-16881934 Msa0153510:three_prime_UTR
TTCATGACTCGATTTATTGC+CGG 0.399249 1_4:-16882670 Msa0153510:CDS
TTCAAAATACACCACTTCTT+GGG 0.402891 1_4:+16882451 None:intergenic
GTGAAAATGTTAAAAGATAA+TGG 0.403732 1_4:-16884950 Msa0153510:CDS
GTGTTGGAAGTGGGTGGAAT+TGG 0.404650 1_4:-16885022 Msa0153510:CDS
GGGTGGAATTGGAGTGAACT+GGG 0.423782 1_4:-16885011 Msa0153510:CDS
TGGGTGGAATTGGAGTGAAC+TGG 0.426991 1_4:-16885012 Msa0153510:CDS
ACTCGATTTATTGCCGGAAA+GGG 0.427868 1_4:-16882664 Msa0153510:CDS
TCCATTGAGACCTGGTCCTA+TGG 0.429507 1_4:-16882638 Msa0153510:CDS
CCCATAATTGTTGGAGAGAT+CGG 0.432044 1_4:-16882754 Msa0153510:CDS
GATGGCGCTTGCAAATTTCC+CGG 0.432957 1_4:-16882262 Msa0153510:CDS
AACAGATCTCTTTGGATGGC+AGG 0.439544 1_4:+16885286 None:intergenic
GCATAGTCGACTGGAAAATT+GGG 0.440341 1_4:+16882895 None:intergenic
GCTCTTATAAAAGCTGGTTT+GGG 0.442512 1_4:-16883102 Msa0153510:CDS
ATAGTATAAAGCAAATCATT+TGG 0.452724 1_4:+16884842 None:intergenic
GGTAACATGCCCATAATTGT+TGG 0.454864 1_4:-16882763 Msa0153510:CDS
CAAAACGCTCTTATAAAAGC+TGG 0.455309 1_4:-16883108 Msa0153510:CDS
TGCGTTTAATAGCTACTATC+AGG 0.464738 1_4:-16882299 Msa0153510:CDS
CAGGTGAATGATCAGGTTGA+TGG 0.470214 1_4:-16882280 Msa0153510:CDS
TCAGCTCATGTTTCATCTGG+TGG 0.473275 1_4:-16884773 Msa0153510:CDS
CCGTTTCTGTCTCCGTCTGT+AGG 0.478583 1_4:+16882727 None:intergenic
GATGTGTATCAGAGCTCATC+AGG 0.478752 1_4:-16883045 Msa0153510:CDS
CTACTATCAGGTGAATGATC+AGG 0.483380 1_4:-16882287 Msa0153510:CDS
TGATACACATCAGCATTTGA+AGG 0.486649 1_4:+16883057 None:intergenic
GCGTTGAATAAGAATGGCTT+TGG 0.487733 1_4:-16882784 Msa0153510:CDS
AGTTGAAGAAGAGTTTGAAA+GGG 0.489250 1_4:+16885238 None:intergenic
GTTTGAAAGGGTATCTGAAA+AGG 0.491212 1_4:+16885250 None:intergenic
GTCAGTGACAGTAGAAAGAC+CGG 0.491584 1_4:+16882243 None:intergenic
TGACAGAGATCCTTCAACTC+AGG 0.492465 1_4:-16882224 Msa0153510:CDS
AAGTTGAAGAAGAGTTTGAA+AGG 0.492902 1_4:+16885237 None:intergenic
CCGAAATACCAACTCACCAT+TGG 0.493738 1_4:-16882520 Msa0153510:CDS
ATCTCTTTGGATGGCAGGGA+GGG 0.495901 1_4:+16885291 None:intergenic
CCCGTTGGTTCTTGATCCAA+TGG 0.499872 1_4:+16882504 None:intergenic
AATGCAGACTGCACTAGTCT+TGG 0.500089 1_4:-16882370 Msa0153510:CDS
ACCACAGTAGATGGTGGTAA+TGG 0.502268 1_4:+16884971 None:intergenic
TCCATAGGACCAGGTCTCAA+TGG 0.502603 1_4:+16882637 None:intergenic
CAATCTGAACCATGAGATCA+TGG 0.502886 1_4:+16882989 None:intergenic
GTCATTGAATTCTTGATGGA+GGG 0.508940 1_4:-16885097 Msa0153510:exon
GACTCGATTTATTGCCGGAA+AGG 0.519224 1_4:-16882665 Msa0153510:CDS
CAATGACGTTCAAAGTTACC+TGG 0.520270 1_4:+16882568 None:intergenic
GTCCTAAAGTCGCCATCGGA+AGG 0.521014 1_4:+16883018 None:intergenic
TCAAGAACCAACGGGCTAGT+AGG 0.521826 1_4:-16882496 Msa0153510:CDS
TGGAAGTGTTGTGGCTTCAA+AGG 0.524842 1_4:+16883146 None:intergenic
TGGATAAAGTAAACTGCCAA+AGG 0.529569 1_4:-16882063 Msa0153510:three_prime_UTR
TACAAGAGCTGGAAGTGTTG+TGG 0.534283 1_4:+16883137 None:intergenic
GCATAGCATAGAGACAGAAA+AGG 0.535755 1_4:+16885368 None:intergenic
GTATGGGCGTTGAATAAGAA+TGG 0.536944 1_4:-16882790 Msa0153510:CDS
GACAGACATCCATGATCTCA+TGG 0.543777 1_4:-16882998 Msa0153510:CDS
GGCTATGGAACTTCGTGTGG+CGG 0.546145 1_4:-16882349 Msa0153510:CDS
TTCTTGATCCAATGGTGAGT+TGG 0.549706 1_4:+16882512 None:intergenic
GGTCATTGAATTCTTGATGG+AGG 0.549863 1_4:-16885098 Msa0153510:exon
ATCACTGTTCAGGTTCGCTG+AGG 0.550563 1_4:+16882426 None:intergenic
ATTTGCCACATCATCAGTGT+TGG 0.551734 1_4:-16885038 Msa0153510:CDS
TCTGGTATTCAGGTTATGGT+TGG 0.552421 1_4:-16884869 Msa0153510:CDS
ACAGATCTCTTTGGATGGCA+GGG 0.555860 1_4:+16885287 None:intergenic
CACTTCCAACACTGATGATG+TGG 0.559904 1_4:+16885033 None:intergenic
AATAAAAGGATAAATGTTCA+CGG 0.560448 1_4:+16882933 None:intergenic
GATAAACAGATCTCTTTGGA+TGG 0.563729 1_4:+16885282 None:intergenic
AATGTGCAACCCTGAGTTGA+AGG 0.566126 1_4:+16882214 None:intergenic
CTTGGGCAAATGTGCTACTC+CGG 0.568572 1_4:+16882468 None:intergenic
TAATTGTTGGAGAGATCGGT+TGG 0.569155 1_4:-16882750 Msa0153510:CDS
CACATCATCAGTGTTGGAAG+TGG 0.569256 1_4:-16885032 Msa0153510:CDS
ACCATTGGATCAAGAACCAA+CGG 0.573644 1_4:-16882505 Msa0153510:CDS
TAAATCGAGTCATGAAACCT+TGG 0.576604 1_4:+16882677 None:intergenic
GACAGAGATCCTTCAACTCA+GGG 0.576853 1_4:-16882223 Msa0153510:CDS
GTCTGTCCTAAAGTCGCCAT+CGG 0.577196 1_4:+16883014 None:intergenic
TAACTATGATACTCTAGTAT+GGG 0.577250 1_4:-16882806 Msa0153510:CDS
CCGTTGTAAGTTGACAAGAA+AGG 0.578866 1_4:+16883171 None:intergenic
CTAAACAAGTATGCATCCAT+AGG 0.581623 1_4:+16882622 None:intergenic
GACTGCACTAGTCTTGGCTA+TGG 0.584565 1_4:-16882364 Msa0153510:CDS
CCTTTCTTGTCAACTTACAA+CGG 0.587520 1_4:-16883171 Msa0153510:CDS
TCCTAAAGTCGCCATCGGAA+GGG 0.589717 1_4:+16883019 None:intergenic
AACGGGCTAGTAGGTGCTAC+CGG 0.592787 1_4:-16882487 Msa0153510:CDS
GATACACATCAGCATTTGAA+GGG 0.593720 1_4:+16883058 None:intergenic
CTCGATTTATTGCCGGAAAG+GGG 0.594300 1_4:-16882663 Msa0153510:CDS
CCATTGGATCAAGAACCAAC+GGG 0.594581 1_4:-16882504 Msa0153510:CDS
CCTACAGACGGAGACAGAAA+CGG 0.595732 1_4:-16882727 Msa0153510:CDS
TCACTGTTCAGGTTCGCTGA+GGG 0.597689 1_4:+16882427 None:intergenic
CTTGGCTATGGAACTTCGTG+TGG 0.608758 1_4:-16882352 Msa0153510:CDS
AGTGATCCTTTAAACGACAA+CGG 0.610182 1_4:-16882856 Msa0153510:CDS
TCATCAGTGTTGGAAGTGGG+TGG 0.618212 1_4:-16885028 Msa0153510:CDS
TAGCACATTTGCCCAAGAAG+TGG 0.619134 1_4:-16882462 Msa0153510:CDS
AAGTATGCATCCATAGGACC+AGG 0.624541 1_4:+16882628 None:intergenic
TCATCAGGTAACCCTTCCGA+TGG 0.628858 1_4:-16883030 Msa0153510:CDS
GAGATCGGTTGGCCTACAGA+CGG 0.643611 1_4:-16882739 Msa0153510:CDS
GGTAACTTTGAACGTCATTG+GGG 0.647034 1_4:-16882565 Msa0153510:CDS
CAAAGGAAAACTGATTGTTG+AGG 0.649345 1_4:-16882046 Msa0153510:three_prime_UTR
GATCTCTTTGGATGGCAGGG+AGG 0.651852 1_4:+16885290 None:intergenic
GGTAGCACCTACTAGCCCGT+TGG 0.654363 1_4:+16882489 None:intergenic
AAGGGGACTCCATTGAGACC+TGG 0.654522 1_4:-16882646 Msa0153510:CDS
TGGCAAGCATAAGACACACT+CGG 0.661204 1_4:+16882394 None:intergenic
ACATCATCAGTGTTGGAAGT+GGG 0.662999 1_4:-16885031 Msa0153510:CDS
AAGAGATTCGATTCTCCTCG+CGG 0.664201 1_4:+16882168 None:intergenic
TCCATTACCACCATCTACTG+TGG 0.670093 1_4:-16884972 Msa0153510:CDS
GACAACAAAAGCATTCAACC+AGG 0.676173 1_4:-16882586 Msa0153510:CDS
GGTGGAATTGGAGTGAACTG+GGG 0.692379 1_4:-16885010 Msa0153510:CDS
TGTGGCGGTTTAGATATCCG+TGG 0.708567 1_4:-16882334 Msa0153510:CDS
TCAGTGACAGTAGAAAGACC+GGG 0.731431 1_4:+16882244 None:intergenic
ACGCATATGAGATGTTACCA+CGG 0.737125 1_4:+16882317 None:intergenic
TGATCCAAACTGATTCCGCG+AGG 0.757114 1_4:-16882183 Msa0153510:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTACATCAATATAAAA+AGG + chr1_4:16883929-16883948 None:intergenic 10.0%
!!! TTTTATATTGATGTAAAATA+CGG - chr1_4:16883929-16883948 Msa0153510:intron 10.0%
!!! TATTTATTTATTCTGCATTT+TGG - chr1_4:16882663-16882682 Msa0153510:CDS 15.0%
!!! GTAAAAAGTAAACTTTTTTA+TGG + chr1_4:16882735-16882754 None:intergenic 15.0%
!! AAATTAGACAAAATTTATGT+AGG - chr1_4:16882800-16882819 Msa0153510:CDS 15.0%
!! AATTAGACAAAATTTATGTA+GGG - chr1_4:16882801-16882820 Msa0153510:CDS 15.0%
!!! GTTAAATATGATTTTACTTA+GGG + chr1_4:16883000-16883019 None:intergenic 15.0%
!!! AATTCAATTTTGAAGATTAA+TGG - chr1_4:16883330-16883349 Msa0153510:intron 15.0%
!! TTTATATTGATGTAAAATAC+GGG - chr1_4:16883930-16883949 Msa0153510:intron 15.0%
!!! ATTTCATGTAATTTTTTTCA+AGG - chr1_4:16884105-16884124 Msa0153510:intron 15.0%
!! TCAAATATGAAGCTAAAAAA+TGG + chr1_4:16882168-16882187 None:intergenic 20.0%
!!! AAGTTTTGATTTTTTCAACT+TGG - chr1_4:16882201-16882220 Msa0153510:CDS 20.0%
!! GTGAAAATGTTAAAAGATAA+TGG - chr1_4:16882370-16882389 Msa0153510:CDS 20.0%
!! ATAGTATAAAGCAAATCATT+TGG + chr1_4:16882481-16882500 None:intergenic 20.0%
!!! AAATGATTTGCTTTATACTA+TGG - chr1_4:16882480-16882499 Msa0153510:CDS 20.0%
!!! ATCACTATTTTTCTTTTGTA+GGG + chr1_4:16882778-16882797 None:intergenic 20.0%
!!! AATCACTATTTTTCTTTTGT+AGG + chr1_4:16882779-16882798 None:intergenic 20.0%
!!! GGTTAAATATGATTTTACTT+AGG + chr1_4:16883001-16883020 None:intergenic 20.0%
!! TTACTTTACTTGTATATAGA+TGG + chr1_4:16883022-16883041 None:intergenic 20.0%
!! AAACAAATAGAAAAACAAAC+AGG + chr1_4:16883489-16883508 None:intergenic 20.0%
!! TCTACAAATCATAGAATATT+TGG - chr1_4:16883570-16883589 Msa0153510:intron 20.0%
!!! GATTTTTTCAACAACTTTTT+TGG - chr1_4:16883601-16883620 Msa0153510:intron 20.0%
!! TTAATTAAAACATTGACAAC+AGG + chr1_4:16883750-16883769 None:intergenic 20.0%
!!! GTCAATGTTTTAATTAAATG+AGG - chr1_4:16883753-16883772 Msa0153510:intron 20.0%
!!! ATCATATATTTTTCCTTAAC+AGG + chr1_4:16883815-16883834 None:intergenic 20.0%
!!! TTTTTCATTTCTTAATCTGT+TGG - chr1_4:16883993-16884012 Msa0153510:intron 20.0%
!!! TTTTCATTTCTTAATCTGTT+GGG - chr1_4:16883994-16884013 Msa0153510:intron 20.0%
!!! ATTTTTTTCAAGGTATATTG+CGG - chr1_4:16884115-16884134 Msa0153510:intron 20.0%
!! AATAAAAGGATAAATGTTCA+CGG + chr1_4:16884390-16884409 None:intergenic 20.0%
!! TCTTCATAAAGACTAATAAA+AGG + chr1_4:16884404-16884423 None:intergenic 20.0%
!! CTTAAATACTATTAAGATTC+TGG - chr1_4:16885218-16885237 Msa0153510:five_prime_UTR 20.0%
!!! CTGGATTTTTAATTCATTTT+TGG - chr1_4:16885237-16885256 Msa0153510:five_prime_UTR 20.0%
!! TAGCAACTTAAAATAATTGT+TGG - chr1_4:16885386-16885405 Msa0153510:five_prime_UTR 20.0%
!!! ACTTTTATGCTTTAAAAGTG+AGG + chr1_4:16881991-16882010 None:intergenic 25.0%
! AAAAGATAAACAGATCTCTT+TGG + chr1_4:16882045-16882064 None:intergenic 25.0%
!!! TTTTTCTGTTTTTGTTGCTT+GGG + chr1_4:16882144-16882163 None:intergenic 25.0%
!!! TTTTTTCTGTTTTTGTTGCT+TGG + chr1_4:16882145-16882164 None:intergenic 25.0%
!! TTCAAAGCATCAAGAATATT+TGG + chr1_4:16882427-16882446 None:intergenic 25.0%
!! TGTGTTGAGTTTTTAATCTT+TGG - chr1_4:16882606-16882625 Msa0153510:CDS 25.0%
!! ATATGATTTTACTTAGGGAA+GGG + chr1_4:16882995-16883014 None:intergenic 25.0%
!! AATATGATTTTACTTAGGGA+AGG + chr1_4:16882996-16883015 None:intergenic 25.0%
!! CAACACATCAAGTATTTTAT+TGG - chr1_4:16883105-16883124 Msa0153510:CDS 25.0%
!! ACATCAAGTATTTTATTGGA+AGG - chr1_4:16883109-16883128 Msa0153510:CDS 25.0%
!! AAGTATTTTATTGGAAGGAA+AGG - chr1_4:16883114-16883133 Msa0153510:CDS 25.0%
!! AGTATTTTATTGGAAGGAAA+GGG - chr1_4:16883115-16883134 Msa0153510:CDS 25.0%
!! TTTAGTAAGAAAGTTTTTGC+AGG - chr1_4:16883167-16883186 Msa0153510:CDS 25.0%
!! TTTTTGCAGGAACTTTTTAT+AGG - chr1_4:16883180-16883199 Msa0153510:CDS 25.0%
! ATTTGTAGATGAAGAATCAA+GGG + chr1_4:16883559-16883578 None:intergenic 25.0%
! TGATTAAATTTAGCTGCAAA+AGG - chr1_4:16883674-16883693 Msa0153510:intron 25.0%
! GATTAAATTTAGCTGCAAAA+GGG - chr1_4:16883675-16883694 Msa0153510:intron 25.0%
!! ATATGTCTTCCTAACTTTTT+GGG - chr1_4:16883871-16883890 Msa0153510:intron 25.0%
! AGTCATTTGTTTAACAGTTA+AGG + chr1_4:16884033-16884052 None:intergenic 25.0%
! TAACTATGATACTCTAGTAT+GGG - chr1_4:16884514-16884533 Msa0153510:intron 25.0%
!!! AATAGTACTGTTTGCTTTTT+TGG - chr1_4:16885177-16885196 Msa0153510:five_prime_UTR 25.0%
! GACAAAATTTCCTTAAAATC+TGG - chr1_4:16885333-16885352 Msa0153510:five_prime_UTR 25.0%
!! AATCTGAATTCCAGATTTTA+AGG + chr1_4:16885346-16885365 None:intergenic 25.0%
ATAGAGACAGAAAAGGTAAT+TGG + chr1_4:16881948-16881967 None:intergenic 30.0%
AGTTGAAGAAGAGTTTGAAA+GGG + chr1_4:16882085-16882104 None:intergenic 30.0%
AAGTTGAAGAAGAGTTTGAA+AGG + chr1_4:16882086-16882105 None:intergenic 30.0%
TGATGGAGGGTAAAAAATTT+AGG - chr1_4:16882236-16882255 Msa0153510:CDS 30.0%
TTTGAAGAAATCTGGTATTC+AGG - chr1_4:16882441-16882460 Msa0153510:CDS 30.0%
GGTTATGATTGTTTCAAACT+AGG - chr1_4:16882684-16882703 Msa0153510:CDS 30.0%
AGTGAAGACATATTTAACCA+AGG - chr1_4:16882861-16882880 Msa0153510:CDS 30.0%
GTGAAGACATATTTAACCAA+GGG - chr1_4:16882862-16882881 Msa0153510:CDS 30.0%
GACAAGTAATTTCCATACAT+CGG + chr1_4:16883399-16883418 None:intergenic 30.0%
! TGTGTTTGAAATCATTGACT+AGG - chr1_4:16883453-16883472 Msa0153510:intron 30.0%
AGTTATAATGTCTGCCAAAA+AGG - chr1_4:16883527-16883546 Msa0153510:intron 30.0%
TTTGTAGATGAAGAATCAAG+GGG + chr1_4:16883558-16883577 None:intergenic 30.0%
GATTTGTAGATGAAGAATCA+AGG + chr1_4:16883560-16883579 None:intergenic 30.0%
! AGATTTTATGCATGCAACAA+AGG + chr1_4:16883843-16883862 None:intergenic 30.0%
GTTGCATGCATAAAATCTAA+AGG - chr1_4:16883845-16883864 Msa0153510:intron 30.0%
! GATATGTCTTCCTAACTTTT+TGG - chr1_4:16883870-16883889 Msa0153510:intron 30.0%
! TATGTCTTCCTAACTTTTTG+GGG - chr1_4:16883872-16883891 Msa0153510:intron 30.0%
! TTTTGGATATTTACAAGAGC+TGG + chr1_4:16884197-16884216 None:intergenic 30.0%
CTAACTATGATACTCTAGTA+TGG - chr1_4:16884513-16884532 Msa0153510:intron 30.0%
!! GATTGTTTTATTACGATGGA+CGG - chr1_4:16884777-16884796 Msa0153510:CDS 30.0%
TTCAAAATACACCACTTCTT+GGG + chr1_4:16884872-16884891 None:intergenic 30.0%
TTTCAAAATACACCACTTCT+TGG + chr1_4:16884873-16884892 None:intergenic 30.0%
AATCAGTTTGGATCATGATT+TGG + chr1_4:16885132-16885151 None:intergenic 30.0%
!!! GGAGGGACTTTTTTATGTTA+TGG + chr1_4:16882015-16882034 None:intergenic 35.0%
GATAAACAGATCTCTTTGGA+TGG + chr1_4:16882041-16882060 None:intergenic 35.0%
!! GTTTGAAAGGGTATCTGAAA+AGG + chr1_4:16882073-16882092 None:intergenic 35.0%
CTTGGTCATTGAATTCTTGA+TGG - chr1_4:16882219-16882238 Msa0153510:CDS 35.0%
GTCATTGAATTCTTGATGGA+GGG - chr1_4:16882223-16882242 Msa0153510:CDS 35.0%
! AACATTTTCACCACAGTAGA+TGG + chr1_4:16882361-16882380 None:intergenic 35.0%
!! CTTGATGCTTTGAAGAAATC+TGG - chr1_4:16882433-16882452 Msa0153510:CDS 35.0%
! GAAATCTGGTATTCAGGTTA+TGG - chr1_4:16882447-16882466 Msa0153510:CDS 35.0%
TGATTGTTTCAAACTAGGAG+AGG - chr1_4:16882689-16882708 Msa0153510:CDS 35.0%
TCTCTTGAACAATTCGTCTT+TGG + chr1_4:16882916-16882935 None:intergenic 35.0%
! TGCAGGAACTTTTTATAGGA+TGG - chr1_4:16883184-16883203 Msa0153510:CDS 35.0%
AGTATGTATTGCTGTGAGTT+TGG - chr1_4:16883272-16883291 Msa0153510:intron 35.0%
ACTAAGATACTTCCGATGTA+TGG - chr1_4:16883384-16883403 Msa0153510:intron 35.0%
GAAATTACTTGTCGTTCCTT+TGG - chr1_4:16883406-16883425 Msa0153510:intron 35.0%
GATTCCACTAAGTATTCCAA+AGG + chr1_4:16883425-16883444 None:intergenic 35.0%
!! CAACAGGTTGATATTTGTAC+AGG + chr1_4:16883734-16883753 None:intergenic 35.0%
AATTTCACACTGACCTGTTA+AGG - chr1_4:16883799-16883818 Msa0153510:intron 35.0%
! ATGTCTTCCTAACTTTTTGG+GGG - chr1_4:16883873-16883892 Msa0153510:intron 35.0%
ATGTAAAATACGGGCAATTG+CGG - chr1_4:16883939-16883958 Msa0153510:intron 35.0%
!! TTTTCAAGGTATATTGCGGT+TGG - chr1_4:16884119-16884138 Msa0153510:intron 35.0%
CCTTTCTTGTCAACTTACAA+CGG - chr1_4:16884149-16884168 Msa0153510:intron 35.0%
!!! CAGCTTTTATAAGAGCGTTT+TGG + chr1_4:16884214-16884233 None:intergenic 35.0%
CAAAACGCTCTTATAAAAGC+TGG - chr1_4:16884212-16884231 Msa0153510:intron 35.0%
! GCTCTTATAAAAGCTGGTTT+GGG - chr1_4:16884218-16884237 Msa0153510:intron 35.0%
GATACACATCAGCATTTGAA+GGG + chr1_4:16884265-16884284 None:intergenic 35.0%
TGATACACATCAGCATTTGA+AGG + chr1_4:16884266-16884285 None:intergenic 35.0%
GGATAAATGTTCACGGTAAA+TGG + chr1_4:16884383-16884402 None:intergenic 35.0%
TTGAAAAATGCATAGTCGAC+TGG + chr1_4:16884437-16884456 None:intergenic 35.0%
!! GTCGACTATGCATTTTTCAA+CGG - chr1_4:16884437-16884456 Msa0153510:intron 35.0%
AGTGATCCTTTAAACGACAA+CGG - chr1_4:16884464-16884483 Msa0153510:intron 35.0%
! ATCTTTCCGTTGTCGTTTAA+AGG + chr1_4:16884473-16884492 None:intergenic 35.0%
TAAATCGAGTCATGAAACCT+TGG + chr1_4:16884646-16884665 None:intergenic 35.0%
TTCATGACTCGATTTATTGC+CGG - chr1_4:16884650-16884669 Msa0153510:intron 35.0%
CTAAACAAGTATGCATCCAT+AGG + chr1_4:16884701-16884720 None:intergenic 35.0%
AGGTAACTTTGAACGTCATT+GGG - chr1_4:16884754-16884773 Msa0153510:intron 35.0%
!! TGGGGATTGTTTTATTACGA+TGG - chr1_4:16884773-16884792 Msa0153510:CDS 35.0%
TGCGTTTAATAGCTACTATC+AGG - chr1_4:16885021-16885040 Msa0153510:CDS 35.0%
TGGATAAAGTAAACTGCCAA+AGG - chr1_4:16885257-16885276 Msa0153510:five_prime_UTR 35.0%
! CTCAACAATCAGTTTTCCTT+TGG + chr1_4:16885276-16885295 None:intergenic 35.0%
CAAAGGAAAACTGATTGTTG+AGG - chr1_4:16885274-16885293 Msa0153510:five_prime_UTR 35.0%
GCATAGCATAGAGACAGAAA+AGG + chr1_4:16881955-16881974 None:intergenic 40.0%
!! TGTTTTTGTTGCTTGGGTGA+AGG + chr1_4:16882138-16882157 None:intergenic 40.0%
GGTCATTGAATTCTTGATGG+AGG - chr1_4:16882222-16882241 Msa0153510:CDS 40.0%
ATTTGCCACATCATCAGTGT+TGG - chr1_4:16882282-16882301 Msa0153510:CDS 40.0%
! ACATCATCAGTGTTGGAAGT+GGG - chr1_4:16882289-16882308 Msa0153510:CDS 40.0%
! ATTTTCACCACAGTAGATGG+TGG + chr1_4:16882358-16882377 None:intergenic 40.0%
! TCTGGTATTCAGGTTATGGT+TGG - chr1_4:16882451-16882470 Msa0153510:CDS 40.0%
TCGTCAAGCTGCTGAAAAAT+GGG - chr1_4:16882510-16882529 Msa0153510:CDS 40.0%
GTTTCAGCTCATGTTTCATC+TGG - chr1_4:16882544-16882563 Msa0153510:CDS 40.0%
GGAGAGGTGAGAAATTATAG+TGG - chr1_4:16882705-16882724 Msa0153510:CDS 40.0%
!! CGTTCCTTTGGAATACTTAG+TGG - chr1_4:16883418-16883437 Msa0153510:intron 40.0%
GATATTTGTACAGGTGGACA+AGG + chr1_4:16883725-16883744 None:intergenic 40.0%
!! CAGGTTGATATTTGTACAGG+TGG + chr1_4:16883731-16883750 None:intergenic 40.0%
TGTAAAATACGGGCAATTGC+GGG - chr1_4:16883940-16883959 Msa0153510:intron 40.0%
! CCGTTGTAAGTTGACAAGAA+AGG + chr1_4:16884152-16884171 None:intergenic 40.0%
CGCTCTTATAAAAGCTGGTT+TGG - chr1_4:16884217-16884236 Msa0153510:intron 40.0%
CAATCTGAACCATGAGATCA+TGG + chr1_4:16884334-16884353 None:intergenic 40.0%
GCATAGTCGACTGGAAAATT+GGG + chr1_4:16884428-16884447 None:intergenic 40.0%
TGCATAGTCGACTGGAAAAT+TGG + chr1_4:16884429-16884448 None:intergenic 40.0%
!! GTATGGGCGTTGAATAAGAA+TGG - chr1_4:16884530-16884549 Msa0153510:intron 40.0%
GCGTTGAATAAGAATGGCTT+TGG - chr1_4:16884536-16884555 Msa0153510:intron 40.0%
GGTAACATGCCCATAATTGT+TGG - chr1_4:16884557-16884576 Msa0153510:intron 40.0%
CCGATCTCTCCAACAATTAT+GGG + chr1_4:16884569-16884588 None:intergenic 40.0%
CCCATAATTGTTGGAGAGAT+CGG - chr1_4:16884566-16884585 Msa0153510:intron 40.0%
ACCGATCTCTCCAACAATTA+TGG + chr1_4:16884570-16884589 None:intergenic 40.0%
TAATTGTTGGAGAGATCGGT+TGG - chr1_4:16884570-16884589 Msa0153510:intron 40.0%
ACTCGATTTATTGCCGGAAA+GGG - chr1_4:16884656-16884675 Msa0153510:intron 40.0%
!! GACAACAAAAGCATTCAACC+AGG - chr1_4:16884734-16884753 Msa0153510:intron 40.0%
CAATGACGTTCAAAGTTACC+TGG + chr1_4:16884755-16884774 None:intergenic 40.0%
CAGGTAACTTTGAACGTCAT+TGG - chr1_4:16884753-16884772 Msa0153510:intron 40.0%
GGTAACTTTGAACGTCATTG+GGG - chr1_4:16884755-16884774 Msa0153510:intron 40.0%
!! CCAATGGTGAGTTGGTATTT+CGG + chr1_4:16884803-16884822 None:intergenic 40.0%
TTCTTGATCCAATGGTGAGT+TGG + chr1_4:16884811-16884830 None:intergenic 40.0%
ACCATTGGATCAAGAACCAA+CGG - chr1_4:16884815-16884834 Msa0153510:CDS 40.0%
ACGCATATGAGATGTTACCA+CGG + chr1_4:16885006-16885025 None:intergenic 40.0%
CTACTATCAGGTGAATGATC+AGG - chr1_4:16885033-16885052 Msa0153510:CDS 40.0%
ACAGATCTCTTTGGATGGCA+GGG + chr1_4:16882036-16882055 None:intergenic 45.0%
AACAGATCTCTTTGGATGGC+AGG + chr1_4:16882037-16882056 None:intergenic 45.0%
GCTTGGGTGAAGGACTAAAA+TGG + chr1_4:16882128-16882147 None:intergenic 45.0%
! CACTTCCAACACTGATGATG+TGG + chr1_4:16882290-16882309 None:intergenic 45.0%
! CACATCATCAGTGTTGGAAG+TGG - chr1_4:16882288-16882307 Msa0153510:CDS 45.0%
TCCATTACCACCATCTACTG+TGG - chr1_4:16882348-16882367 Msa0153510:CDS 45.0%
! ACCACAGTAGATGGTGGTAA+TGG + chr1_4:16882352-16882371 None:intergenic 45.0%
GTCGTCAAGCTGCTGAAAAA+TGG - chr1_4:16882509-16882528 Msa0153510:CDS 45.0%
TCAGCTCATGTTTCATCTGG+TGG - chr1_4:16882547-16882566 Msa0153510:CDS 45.0%
CATCTGGTGGAGTAGATATC+AGG - chr1_4:16882560-16882579 Msa0153510:CDS 45.0%
TGGTGGAGTAGATATCAGGT+TGG - chr1_4:16882564-16882583 Msa0153510:CDS 45.0%
!! ACTTCTAGAGCTCAATCCCT+TGG + chr1_4:16882881-16882900 None:intergenic 45.0%
TGACGGCCAACCAAATTACA+AGG - chr1_4:16882968-16882987 Msa0153510:CDS 45.0%
GACGGCCAACCAAATTACAA+GGG - chr1_4:16882969-16882988 Msa0153510:CDS 45.0%
AAGGGCCCTTGTAATTTGGT+TGG + chr1_4:16882977-16882996 None:intergenic 45.0%
GAGTCAAATGCAGAAGAGAG+GGG + chr1_4:16883236-16883255 None:intergenic 45.0%
CGAGTCAAATGCAGAAGAGA+GGG + chr1_4:16883237-16883256 None:intergenic 45.0%
CCTCTCTTCTGCATTTGACT+CGG - chr1_4:16883235-16883254 Msa0153510:intron 45.0%
TGTATTGCTGTGAGTTTGGC+AGG - chr1_4:16883276-16883295 Msa0153510:intron 45.0%
!! ATCAAGGGGCATGTCCTTTT+TGG + chr1_4:16883544-16883563 None:intergenic 45.0%
CTTGCTTGCACTGAATTCAG+TGG - chr1_4:16883644-16883663 Msa0153510:intron 45.0%
GTACAGGTGGACAAGGATTT+AGG + chr1_4:16883718-16883737 None:intergenic 45.0%
GTAAAATACGGGCAATTGCG+GGG - chr1_4:16883941-16883960 Msa0153510:intron 45.0%
!! TGGAAGTGTTGTGGCTTCAA+AGG + chr1_4:16884177-16884196 None:intergenic 45.0%
!! TACAAGAGCTGGAAGTGTTG+TGG + chr1_4:16884186-16884205 None:intergenic 45.0%
GATGTGTATCAGAGCTCATC+AGG - chr1_4:16884275-16884294 Msa0153510:intron 45.0%
GACAGACATCCATGATCTCA+TGG - chr1_4:16884322-16884341 Msa0153510:intron 45.0%
GACTCGATTTATTGCCGGAA+AGG - chr1_4:16884655-16884674 Msa0153510:intron 45.0%
CTCGATTTATTGCCGGAAAG+GGG - chr1_4:16884657-16884676 Msa0153510:intron 45.0%
AAGTATGCATCCATAGGACC+AGG + chr1_4:16884695-16884714 None:intergenic 45.0%
CCGAAATACCAACTCACCAT+TGG - chr1_4:16884800-16884819 Msa0153510:CDS 45.0%
CCATTGGATCAAGAACCAAC+GGG - chr1_4:16884816-16884835 Msa0153510:CDS 45.0%
TAGCACATTTGCCCAAGAAG+TGG - chr1_4:16884858-16884877 Msa0153510:CDS 45.0%
GTGCAACTTGATCACTGTTC+AGG + chr1_4:16884907-16884926 None:intergenic 45.0%
TGGCAAGCATAAGACACACT+CGG + chr1_4:16884929-16884948 None:intergenic 45.0%
! GACTAGTGCAGTCTGCATTT+TGG + chr1_4:16884949-16884968 None:intergenic 45.0%
! AATGCAGACTGCACTAGTCT+TGG - chr1_4:16884950-16884969 Msa0153510:CDS 45.0%
!! CAGGTGAATGATCAGGTTGA+TGG - chr1_4:16885040-16885059 Msa0153510:CDS 45.0%
TCAGTGACAGTAGAAAGACC+GGG + chr1_4:16885079-16885098 None:intergenic 45.0%
GTCAGTGACAGTAGAAAGAC+CGG + chr1_4:16885080-16885099 None:intergenic 45.0%
TGACAGAGATCCTTCAACTC+AGG - chr1_4:16885096-16885115 Msa0153510:exon 45.0%
GACAGAGATCCTTCAACTCA+GGG - chr1_4:16885097-16885116 Msa0153510:exon 45.0%
! AATGTGCAACCCTGAGTTGA+AGG + chr1_4:16885109-16885128 None:intergenic 45.0%
AAGAGATTCGATTCTCCTCG+CGG + chr1_4:16885155-16885174 None:intergenic 45.0%
ATCTCTTTGGATGGCAGGGA+GGG + chr1_4:16882032-16882051 None:intergenic 50.0%
! TCATCAGTGTTGGAAGTGGG+TGG - chr1_4:16882292-16882311 Msa0153510:CDS 50.0%
GTGTTGGAAGTGGGTGGAAT+TGG - chr1_4:16882298-16882317 Msa0153510:CDS 50.0%
TGGGTGGAATTGGAGTGAAC+TGG - chr1_4:16882308-16882327 Msa0153510:CDS 50.0%
GGGTGGAATTGGAGTGAACT+GGG - chr1_4:16882309-16882328 Msa0153510:CDS 50.0%
GGTGGAATTGGAGTGAACTG+GGG - chr1_4:16882310-16882329 Msa0153510:CDS 50.0%
GAGAACCTGAGTTCGATTCC+TGG - chr1_4:16882932-16882951 Msa0153510:CDS 50.0%
ACCTGAGTTCGATTCCTGGT+TGG - chr1_4:16882936-16882955 Msa0153510:CDS 50.0%
CCTGAGTTCGATTCCTGGTT+GGG - chr1_4:16882937-16882956 Msa0153510:CDS 50.0%
CTGGTTGGGACGATTCTTGA+CGG - chr1_4:16882951-16882970 Msa0153510:CDS 50.0%
AGGGAAGGGCCCTTGTAATT+TGG + chr1_4:16882981-16883000 None:intergenic 50.0%
CCGAGTCAAATGCAGAAGAG+AGG + chr1_4:16883238-16883257 None:intergenic 50.0%
CACTCAGCCCCCAAAAAGTT+AGG + chr1_4:16883883-16883902 None:intergenic 50.0%
TCATCAGGTAACCCTTCCGA+TGG - chr1_4:16884290-16884309 Msa0153510:intron 50.0%
TCCTAAAGTCGCCATCGGAA+GGG + chr1_4:16884304-16884323 None:intergenic 50.0%
GTCTGTCCTAAAGTCGCCAT+CGG + chr1_4:16884309-16884328 None:intergenic 50.0%
CCTACAGACGGAGACAGAAA+CGG - chr1_4:16884593-16884612 Msa0153510:intron 50.0%
!! CTCGCGCAACGTTTTAACCA+AGG - chr1_4:16884626-16884645 Msa0153510:intron 50.0%
TCTCAATGGAGTCCCCTTTC+CGG + chr1_4:16884672-16884691 None:intergenic 50.0%
TCCATTGAGACCTGGTCCTA+TGG - chr1_4:16884682-16884701 Msa0153510:intron 50.0%
TCCATAGGACCAGGTCTCAA+TGG + chr1_4:16884686-16884705 None:intergenic 50.0%
!! CCCGTTGGTTCTTGATCCAA+TGG + chr1_4:16884819-16884838 None:intergenic 50.0%
!! TCAAGAACCAACGGGCTAGT+AGG - chr1_4:16884824-16884843 Msa0153510:CDS 50.0%
! CTTGGGCAAATGTGCTACTC+CGG + chr1_4:16884855-16884874 None:intergenic 50.0%
! TCACTGTTCAGGTTCGCTGA+GGG + chr1_4:16884896-16884915 None:intergenic 50.0%
! ATCACTGTTCAGGTTCGCTG+AGG + chr1_4:16884897-16884916 None:intergenic 50.0%
!! GACTGCACTAGTCTTGGCTA+TGG - chr1_4:16884956-16884975 Msa0153510:CDS 50.0%
CTTGGCTATGGAACTTCGTG+TGG - chr1_4:16884968-16884987 Msa0153510:CDS 50.0%
TGTGGCGGTTTAGATATCCG+TGG - chr1_4:16884986-16885005 Msa0153510:CDS 50.0%
GATGGCGCTTGCAAATTTCC+CGG - chr1_4:16885058-16885077 Msa0153510:CDS 50.0%
! TGATCCAAACTGATTCCGCG+AGG - chr1_4:16885137-16885156 Msa0153510:five_prime_UTR 50.0%
TTCTCCTCGCGGAATCAGTT+TGG + chr1_4:16885144-16885163 None:intergenic 50.0%
GATCTCTTTGGATGGCAGGG+AGG + chr1_4:16882033-16882052 None:intergenic 55.0%
CCCAACCAGGAATCGAACTC+AGG + chr1_4:16882940-16882959 None:intergenic 55.0%
CGTCAAGAATCGTCCCAACC+AGG + chr1_4:16882953-16882972 None:intergenic 55.0%
!! CTTTTTGGGGGCTGAGTGCA+TGG - chr1_4:16883885-16883904 Msa0153510:intron 55.0%
ACCCTTCCGATGGCGACTTT+AGG - chr1_4:16884300-16884319 Msa0153510:intron 55.0%
GTCCTAAAGTCGCCATCGGA+AGG + chr1_4:16884305-16884324 None:intergenic 55.0%
!! GAGATCGGTTGGCCTACAGA+CGG - chr1_4:16884581-16884600 Msa0153510:intron 55.0%
CCGTTTCTGTCTCCGTCTGT+AGG + chr1_4:16884596-16884615 None:intergenic 55.0%
AAGGGGACTCCATTGAGACC+TGG - chr1_4:16884674-16884693 Msa0153510:intron 55.0%
!! AACGGGCTAGTAGGTGCTAC+CGG - chr1_4:16884833-16884852 Msa0153510:CDS 55.0%
GGCTATGGAACTTCGTGTGG+CGG - chr1_4:16884971-16884990 Msa0153510:CDS 55.0%
GGTAGCACCTACTAGCCCGT+TGG + chr1_4:16884834-16884853 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 16881933 16885409 16881933 ID=Msa0153510;Name=Msa0153510
chr1_4 mRNA 16881933 16885409 16881933 ID=Msa0153510-mRNA-1;Parent=Msa0153510;Name=Msa0153510-mRNA-1;_AED=0.00;_eAED=0.00;_QI=305|1|1|1|1|1|2|193|477
chr1_4 exon 16881933 16883215 16881933 ID=Msa0153510-mRNA-1:exon:6450;Parent=Msa0153510-mRNA-1
chr1_4 exon 16884761 16885409 16884761 ID=Msa0153510-mRNA-1:exon:6449;Parent=Msa0153510-mRNA-1
chr1_4 five_prime_UTR 16885105 16885409 16885105 ID=Msa0153510-mRNA-1:five_prime_utr;Parent=Msa0153510-mRNA-1
chr1_4 CDS 16884761 16885104 16884761 ID=Msa0153510-mRNA-1:cds;Parent=Msa0153510-mRNA-1
chr1_4 CDS 16882126 16883215 16882126 ID=Msa0153510-mRNA-1:cds;Parent=Msa0153510-mRNA-1
chr1_4 three_prime_UTR 16881933 16882125 16881933 ID=Msa0153510-mRNA-1:three_prime_utr;Parent=Msa0153510-mRNA-1
Gene Sequence

>Msa0153510

ATGGAGGGTAAAAAATTTAGGATATGTTTAGTTCTTATGATGTTATTTGCCACATCATCAGTGTTGGAAGTGGGTGGAATTGGAGTGAACTGGGGAACACAGTCAACACATCCATTACCACCATCTACTGTGGTGAAAATGTTAAAAGATAATGGTATTCAAAAAGTTAAGCTTTTTGATGCTGATCCAAATATTCTTGATGCTTTGAAGAAATCTGGTATTCAGGTTATGGTTGGTATACCAAATGATTTGCTTTATACTATGGCTAATAGTCGTCAAGCTGCTGAAAAATGGGTTGCTAAGAATGTTTCAGCTCATGTTTCATCTGGTGGAGTAGATATCAGGTATATTGCGGTTGGAAATGAACCTTTCTTGTCAACTTACAACGGTACCTTTGAAGCCACAACACTTCCAGCTCTTGTAAATATCCAAAACGCTCTTATAAAAGCTGGTTTGGGAAGTTCAATCAAAGTCACTGTCCCTTCAAATGCTGATGTGTATCAGAGCTCATCAGGTAACCCTTCCGATGGCGACTTTAGGACAGACATCCATGATCTCATGGTTCAGATTGTCAAGTTTTTGAGTCAGAACAATGCTCCATTTACCGTGAACATTTATCCTTTTATTAGTCTTTATGAAGATCCCAATTTTCCAGTCGACTATGCATTTTTCAACGGTTTTAGTGATCCTTTAAACGACAACGGAAAGATCTACGACAATGTCTTTGATGCTAACTATGATACTCTAGTATGGGCGTTGAATAAGAATGGCTTTGGTAACATGCCCATAATTGTTGGAGAGATCGGTTGGCCTACAGACGGAGACAGAAACGGAAATCTTCAACTCGCGCAACGTTTTAACCAAGGTTTCATGACTCGATTTATTGCCGGAAAGGGGACTCCATTGAGACCTGGTCCTATGGATGCATACTTGTTTAGTTTAGTAGATGAAGACAACAAAAGCATTCAACCAGGTAACTTTGAACGTCATTGGGGATTGTTTTATTACGATGGACGGCCGAAATACCAACTCACCATTGGATCAAGAACCAACGGGCTAGTAGGTGCTACCGGAGTAGCACATTTGCCCAAGAAGTGGTGTATTTTGAAACCCTCAGCGAACCTGAACAGTGATCAAGTTGCACCGAGTGTGTCTTATGCTTGCCAAAATGCAGACTGCACTAGTCTTGGCTATGGAACTTCGTGTGGCGGTTTAGATATCCGTGGTAACATCTCATATGCGTTTAATAGCTACTATCAGGTGAATGATCAGGTTGATGGCGCTTGCAAATTTCCCGGTCTTTCTACTGTCACTGACAGAGATCCTTCAACTCAGGGTTGCACATTCCAAATCATGATCCAAACTGATTCCGCGAGGAGAATCGAATCTCTTAGAATAGTACTGTTTGCTTTTTTGGTTGTTGCTTTTTTGTAA
Protein sequence

>Msa0153510

MEGKKFRICLVLMMLFATSSVLEVGGIGVNWGTQSTHPLPPSTVVKMLKDNGIQKVKLFDADPNILDALKKSGIQVMVGIPNDLLYTMANSRQAAEKWVAKNVSAHVSSGGVDIRYIAVGNEPFLSTYNGTFEATTLPALVNIQNALIKAGLGSSIKVTVPSNADVYQSSSGNPSDGDFRTDIHDLMVQIVKFLSQNNAPFTVNIYPFISLYEDPNFPVDYAFFNGFSDPLNDNGKIYDNVFDANYDTLVWALNKNGFGNMPIIVGEIGWPTDGDRNGNLQLAQRFNQGFMTRFIAGKGTPLRPGPMDAYLFSLVDEDNKSIQPGNFERHWGLFYYDGRPKYQLTIGSRTNGLVGATGVAHLPKKWCILKPSANLNSDQVAPSVSYACQNADCTSLGYGTSCGGLDIRGNISYAFNSYYQVNDQVDGACKFPGLSTVTDRDPSTQGCTFQIMIQTDSARRIESLRIVLFAFLVVAFL*