AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0055880

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0055880 MtrunA17_Chr1g0148391 98.742 477 5 1 1 477 1 476 0.0 963
Msa0055880 MtrunA17_Chr3g0138741 75.630 476 115 1 2 476 6 481 0.0 756
Msa0055880 MtrunA17_Chr6g0461601 55.602 482 205 5 3 477 2 481 0.0 525
Msa0055880 MtrunA17_Chr4g0069801 57.018 456 192 4 1 453 1 455 0.0 523
Msa0055880 MtrunA17_Chr2g0306311 50.000 504 213 7 9 474 9 511 5.17e-177 506
Msa0055880 MtrunA17_Chr4g0062771 51.042 480 227 4 4 476 8 486 2.21e-176 504
Msa0055880 MtrunA17_Chr7g0253091 53.878 477 211 5 4 476 3 474 2.23e-173 496
Msa0055880 MtrunA17_Chr8g0383311 51.029 486 222 6 5 477 14 496 2.72e-172 494
Msa0055880 MtrunA17_Chr4g0076581 52.331 472 218 4 10 476 14 483 1.11e-167 482
Msa0055880 MtrunA17_Chr2g0290821 53.630 427 194 2 27 451 28 452 2.14e-163 471
Msa0055880 MtrunA17_Chr3g0129341 48.739 476 232 6 1 467 1 473 8.50e-163 469
Msa0055880 MtrunA17_Chr3g0105981 46.455 409 215 4 26 434 26 430 2.48e-129 382
Msa0055880 MtrunA17_Chr4g0034901 34.764 466 269 17 5 449 8 459 9.42e-70 229
Msa0055880 MtrunA17_Chr8g0339191 33.263 472 276 17 8 453 4 462 3.72e-68 225
Msa0055880 MtrunA17_Chr1g0161011 34.802 454 268 16 11 449 5 445 1.54e-67 224
Msa0055880 MtrunA17_Chr4g0046311 33.772 456 274 17 8 443 4 451 5.91e-67 222
Msa0055880 MtrunA17_Chr8g0389741 32.494 437 269 14 27 449 28 452 2.92e-63 213
Msa0055880 MtrunA17_Chr6g0487261 31.590 459 286 14 6 449 9 454 5.62e-63 213
Msa0055880 MtrunA17_Chr8g0378621 30.983 468 284 15 1 449 1 448 1.93e-62 211
Msa0055880 MtrunA17_Chr3g0144531 32.569 436 272 15 27 449 28 454 8.23e-60 203
Msa0055880 MtrunA17_Chr5g0434591 32.599 454 275 17 12 449 6 444 1.81e-59 203
Msa0055880 MtrunA17_Chr1g0177171 30.472 466 276 15 23 449 34 490 5.46e-59 202
Msa0055880 MtrunA17_Chr3g0121271 29.654 462 296 16 1 449 1 446 6.08e-59 201
Msa0055880 MtrunA17_Chr3g0110371 31.429 455 283 15 10 449 5 445 2.60e-58 200
Msa0055880 MtrunA17_Chr5g0439251 32.823 457 260 18 20 443 18 460 2.50e-57 197
Msa0055880 MtrunA17_Chr7g0234821 30.769 442 276 16 28 449 27 458 1.17e-56 194
Msa0055880 MtrunA17_Chr4g0003281 37.069 348 198 11 10 344 18 357 7.21e-56 191
Msa0055880 MtrunA17_Chr1g0146831 38.081 344 184 15 12 344 16 341 1.69e-54 187
Msa0055880 MtrunA17_Chr7g0250301 36.111 324 186 10 27 344 8 316 5.82e-54 183
Msa0055880 MtrunA17_Chr4g0043851 33.903 351 214 13 7 348 11 352 1.52e-53 185
Msa0055880 MtrunA17_Chr7g0223961 33.258 445 266 19 20 447 16 446 2.05e-53 186
Msa0055880 MtrunA17_Chr1g0189111 35.347 331 194 12 23 344 27 346 8.25e-53 183
Msa0055880 MtrunA17_Chr4g0038941 36.842 323 182 13 27 345 52 356 1.78e-50 175
Msa0055880 MtrunA17_Chr2g0294601 32.951 349 220 8 10 354 41 379 4.48e-50 175
Msa0055880 MtrunA17_Chr4g0075031 29.655 435 281 14 27 449 45 466 4.59e-50 178
Msa0055880 MtrunA17_Chr4g0026321 33.516 364 212 15 18 369 18 363 4.70e-50 175
Msa0055880 MtrunA17_Chr2g0294591 33.133 332 213 6 22 352 25 348 2.50e-49 172
Msa0055880 MtrunA17_Chr4g0043511 30.921 456 268 15 27 449 62 503 3.39e-49 176
Msa0055880 MtrunA17_Chr3g0119541 35.780 327 192 10 27 344 26 343 5.18e-49 172
Msa0055880 MtrunA17_Chr4g0064021 35.258 329 195 10 25 344 24 343 9.42e-49 172
Msa0055880 MtrunA17_Chr4g0039071 33.750 320 201 7 27 344 25 335 1.73e-48 171
Msa0055880 MtrunA17_Chr1g0174261 34.932 292 179 7 56 345 1 283 1.47e-46 165
Msa0055880 MtrunA17_Chr2g0285901 33.429 350 211 13 8 346 3 341 3.03e-46 165
Msa0055880 MtrunA17_Chr2g0321511 32.682 358 210 16 9 350 7 349 8.49e-46 164
Msa0055880 MtrunA17_Chr4g0039021 34.323 303 183 9 47 345 1 291 9.81e-44 155
Msa0055880 MtrunA17_Chr4g0038981 31.871 342 210 10 12 345 1 327 3.47e-43 155
Msa0055880 MtrunA17_Chr4g0038961 32.448 339 213 8 8 345 4 327 4.01e-43 155
Msa0055880 MtrunA17_Chr1g0155001 31.661 319 203 9 27 337 24 335 3.39e-41 152
Msa0055880 MtrunA17_Chr4g0038971 30.678 339 219 9 8 345 4 327 1.32e-40 148
Msa0055880 MtrunA17_Chr7g0250321 33.904 292 176 8 8 294 9 288 2.99e-40 146
Msa0055880 MtrunA17_Chr4g0039011 31.875 320 201 10 27 344 42 346 1.23e-39 146
Msa0055880 MtrunA17_Chr5g0436361 28.896 308 197 12 44 342 54 348 8.41e-28 114
Msa0055880 MtrunA17_Chr2g0294581 37.975 158 88 2 22 179 71 218 1.42e-22 97.4
Msa0055880 MtrunA17_Chr4g0018861 33.333 102 63 3 245 345 77 174 3.04e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0055880 AT4G31140.1 66.949 472 154 2 6 477 7 476 0.0 672
Msa0055880 AT5G58090.1 67.366 429 139 1 27 454 22 450 0.0 611
Msa0055880 AT5G20870.1 56.769 458 185 5 8 455 11 465 2.90e-176 504
Msa0055880 AT3G24330.1 53.043 460 209 5 8 462 20 477 1.79e-172 494
Msa0055880 AT1G64760.1 55.530 434 186 5 24 453 22 452 2.20e-166 478
Msa0055880 AT1G64760.2 55.530 434 186 5 24 453 22 452 2.20e-166 478
Msa0055880 AT5G18220.1 51.452 482 213 8 8 476 15 488 4.66e-166 478
Msa0055880 AT2G19440.2 54.018 448 199 5 10 453 4 448 6.39e-166 477
Msa0055880 AT2G19440.1 54.018 448 199 5 10 453 4 448 6.39e-166 477
Msa0055880 AT3G04010.1 54.214 439 195 4 24 458 30 466 7.08e-166 477
Msa0055880 AT5G64790.1 50.557 449 217 3 11 457 14 459 2.24e-163 471
Msa0055880 AT4G17180.1 50.333 451 212 5 3 451 2 442 2.80e-154 447
Msa0055880 AT5G58480.1 43.807 436 239 5 24 458 23 453 1.92e-128 381
Msa0055880 AT2G05790.1 34.423 459 258 16 23 449 21 468 6.41e-69 228
Msa0055880 AT2G01630.1 34.318 440 254 15 27 449 23 444 1.13e-68 228
Msa0055880 AT4G26830.1 32.450 453 280 14 12 449 10 451 3.40e-68 225
Msa0055880 AT2G01630.3 34.713 435 247 16 27 443 23 438 5.75e-68 224
Msa0055880 AT4G26830.2 32.955 440 269 14 25 449 27 455 1.65e-67 223
Msa0055880 AT5G55180.1 31.519 441 277 13 25 449 25 456 1.22e-64 216
Msa0055880 AT5G55180.2 31.724 435 272 13 25 443 25 450 1.18e-63 214
Msa0055880 AT5G56590.1 31.746 441 274 15 25 449 24 453 4.99e-62 210
Msa0055880 AT3G07320.1 32.658 444 269 17 25 449 23 455 7.86e-61 206
Msa0055880 AT3G55430.1 34.086 443 256 22 24 449 26 449 2.72e-60 204
Msa0055880 AT1G66250.1 32.110 436 268 14 27 449 32 452 3.54e-59 203
Msa0055880 AT5G24318.1 31.385 462 282 19 6 450 13 456 5.22e-58 198
Msa0055880 AT3G57270.1 36.025 322 195 7 25 344 25 337 7.21e-58 195
Msa0055880 AT1G11820.2 29.841 439 275 14 27 449 44 465 1.22e-57 199
Msa0055880 AT4G14080.1 30.872 447 270 17 27 449 42 473 1.78e-56 195
Msa0055880 AT5G24318.2 31.429 455 277 19 6 443 13 449 2.68e-56 194
Msa0055880 AT1G11820.3 29.792 433 271 14 27 443 44 459 5.66e-56 194
Msa0055880 AT3G23770.1 31.333 450 267 18 27 449 37 471 6.48e-56 193
Msa0055880 AT3G13560.4 30.717 446 261 15 27 449 26 446 2.23e-55 192
Msa0055880 AT3G13560.1 30.717 446 261 15 27 449 26 446 2.23e-55 192
Msa0055880 AT3G13560.2 30.717 446 261 15 27 449 26 446 2.23e-55 192
Msa0055880 AT3G13560.5 30.717 446 261 15 27 449 26 446 2.23e-55 192
Msa0055880 AT3G13560.3 30.717 446 261 15 27 449 26 446 2.23e-55 192
Msa0055880 AT4G29360.1 29.091 495 298 16 7 460 4 486 2.14e-54 191
Msa0055880 AT2G16230.1 32.037 437 271 14 27 449 25 449 2.16e-54 190
Msa0055880 AT3G57260.1 35.398 339 202 10 8 344 13 336 5.73e-54 184
Msa0055880 AT4G29360.2 29.150 494 297 16 8 460 15 496 6.24e-54 189
Msa0055880 AT3G57260.2 35.398 339 202 10 8 344 29 352 9.86e-54 184
Msa0055880 AT4G34480.1 32.118 439 265 15 27 449 26 447 1.70e-53 187
Msa0055880 AT2G01630.2 33.687 377 216 14 27 388 23 380 3.49e-53 184
Msa0055880 AT3G15800.1 34.615 338 208 9 14 344 30 361 2.34e-52 182
Msa0055880 AT2G39640.1 33.187 455 266 22 10 451 15 444 2.80e-52 185
Msa0055880 AT4G16260.1 32.184 348 221 9 9 352 4 340 6.01e-52 179
Msa0055880 AT4G18340.2 31.880 367 227 13 6 361 13 367 1.83e-51 179
Msa0055880 AT4G18340.1 31.880 367 227 13 6 361 13 367 4.08e-51 179
Msa0055880 AT4G16260.2 33.227 313 196 8 42 352 10 311 6.48e-50 173
Msa0055880 AT1G33220.1 34.472 322 193 10 6 320 12 322 2.62e-49 172
Msa0055880 AT1G30080.2 31.034 348 219 12 8 344 15 352 1.05e-48 172
Msa0055880 AT1G30080.1 31.034 348 219 12 8 344 15 352 1.17e-48 172
Msa0055880 AT5G20330.1 34.091 352 207 12 4 344 7 344 2.05e-48 170
Msa0055880 AT5G24318.4 33.333 348 211 14 6 346 13 346 2.82e-48 170
Msa0055880 AT5G20390.1 31.884 345 213 11 8 344 13 343 1.99e-47 167
Msa0055880 AT2G27500.2 32.927 328 202 11 26 344 28 346 2.25e-47 168
Msa0055880 AT5G42720.1 35.196 358 209 14 27 373 26 371 2.44e-47 169
Msa0055880 AT2G27500.1 32.927 328 202 11 26 344 28 346 3.52e-47 168
Msa0055880 AT1G32860.1 33.435 329 198 12 27 344 29 347 4.70e-47 168
Msa0055880 AT2G26600.1 33.030 330 203 10 24 344 31 351 8.76e-47 167
Msa0055880 AT5G20340.1 34.154 325 193 11 27 344 43 353 2.52e-46 164
Msa0055880 AT3G57240.1 33.022 321 197 7 24 342 32 336 3.16e-45 161
Msa0055880 AT5G42100.2 33.714 350 205 14 9 346 14 348 2.80e-44 161
Msa0055880 AT5G42100.1 33.714 350 205 14 9 346 14 348 3.23e-44 160
Msa0055880 AT4G34480.2 35.737 319 189 10 27 337 26 336 2.64e-43 157
Msa0055880 AT1G11820.1 29.545 352 219 11 27 365 44 379 1.71e-42 155
Msa0055880 AT3G61810.1 31.212 330 200 10 27 344 55 369 1.55e-41 152
Msa0055880 AT1G77780.1 29.345 351 229 8 8 351 1 339 3.95e-39 145
Msa0055880 AT5G20560.1 29.851 335 216 9 6 334 13 334 8.40e-39 144
Msa0055880 AT1G77790.1 29.859 355 224 12 1 344 1 341 1.13e-36 138
Msa0055880 AT2G27500.3 32.727 275 167 11 77 342 1 266 8.31e-35 132
Msa0055880 AT4G34480.3 31.232 349 209 14 117 449 3 336 1.32e-34 134
Msa0055880 AT3G46570.1 32.759 348 207 14 10 346 13 344 1.90e-34 132
Msa0055880 AT5G24318.3 29.358 327 205 13 140 450 1 317 1.36e-33 129
Msa0055880 AT3G55780.1 26.426 333 218 10 27 344 31 351 3.06e-33 130
Msa0055880 AT2G26600.2 32.707 266 161 10 88 344 1 257 1.15e-31 123

Find 131 sgRNAs with CRISPR-Local

Find 243 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTAAATACTATTAAGATTC+TGG 0.143368 1_2:-11204981 Msa0055880:three_prime_UTR
TTCAAAGCATCAAGAATATT+TGG 0.148229 1_2:+11207775 None:intergenic
TGCATAGTCGACTGGAAAAT+TGG 0.169551 1_2:+11205773 None:intergenic
ACCGATCTCTCCAACAATTA+TGG 0.179022 1_2:+11205632 None:intergenic
ATCTTTCCGTTGTCGTTTAA+AGG 0.202599 1_2:+11205729 None:intergenic
CGCTCTTATAAAAGCTGGTT+TGG 0.202719 1_2:-11205982 Msa0055880:CDS
GACTAGTGCAGTCTGCATTT+TGG 0.234926 1_2:+11205253 None:intergenic
GGATAAATGTTCACGGTAAA+TGG 0.262811 1_2:+11205819 None:intergenic
AAATGATTTGCTTTATACTA+TGG 0.263703 1_2:-11207719 Msa0055880:CDS
TTTGAAGAAATCTGGTATTC+AGG 0.267033 1_2:-11207758 Msa0055880:CDS
TCTCAATGGAGTCCCCTTTC+CGG 0.272611 1_2:+11205530 None:intergenic
GACAAAATTTCCTTAAAATC+TGG 0.273106 1_2:-11204866 Msa0055880:three_prime_UTR
CTTGATGCTTTGAAGAAATC+TGG 0.297702 1_2:-11207766 Msa0055880:CDS
TTTCAAAATACACCACTTCT+TGG 0.304045 1_2:+11205329 None:intergenic
CTAACTATGATACTCTAGTA+TGG 0.317827 1_2:-11205686 Msa0055880:CDS
CTTGGTCATTGAATTCTTGA+TGG 0.320126 1_2:-11207980 Msa0055880:exon
AATCAGTTTGGATCATGATT+TGG 0.323082 1_2:+11205070 None:intergenic
TTCTCCTCGCGGAATCAGTT+TGG 0.344088 1_2:+11205058 None:intergenic
GAAATCTGGTATTCAGGTTA+TGG 0.346498 1_2:-11207752 Msa0055880:CDS
TCTTCATAAAGACTAATAAA+AGG 0.350618 1_2:+11205798 None:intergenic
ATAGAGACAGAAAAGGTAAT+TGG 0.352927 1_2:+11208254 None:intergenic
GTGCAACTTGATCACTGTTC+AGG 0.355760 1_2:+11205295 None:intergenic
CAGGTAACTTTGAACGTCAT+TGG 0.361509 1_2:-11205446 Msa0055880:CDS
AGGTAACTTTGAACGTCATT+GGG 0.365853 1_2:-11205445 Msa0055880:CDS
AAAAGATAAACAGATCTCTT+TGG 0.366906 1_2:+11208157 None:intergenic
CATCTGGTGGAGTAGATATC+AGG 0.372328 1_2:-11207639 Msa0055880:intron
CCGATCTCTCCAACAATTAT+GGG 0.378662 1_2:+11205633 None:intergenic
CCAATGGTGAGTTGGTATTT+CGG 0.383764 1_2:+11205399 None:intergenic
GTTTCAGCTCATGTTTCATC+TGG 0.386117 1_2:-11207655 Msa0055880:CDS
ACCCTTCCGATGGCGACTTT+AGG 0.386656 1_2:-11205899 Msa0055880:CDS
GCTTGGGTGAAGGACTAAAA+TGG 0.392891 1_2:+11208074 None:intergenic
TAGCAACTTAAAATAATTGT+TGG 0.399091 1_2:-11204813 Msa0055880:three_prime_UTR
TTCATGACTCGATTTATTGC+CGG 0.399249 1_2:-11205549 Msa0055880:CDS
TTCAAAATACACCACTTCTT+GGG 0.402891 1_2:+11205330 None:intergenic
GTGAAAATGTTAAAAGATAA+TGG 0.403732 1_2:-11207829 Msa0055880:CDS
GTGTTGGAAGTGGGTGGAAT+TGG 0.404650 1_2:-11207901 Msa0055880:CDS
GGGTGGAATTGGAGTGAACT+GGG 0.423782 1_2:-11207890 Msa0055880:CDS
TGGGTGGAATTGGAGTGAAC+TGG 0.426991 1_2:-11207891 Msa0055880:CDS
ACTCGATTTATTGCCGGAAA+GGG 0.427868 1_2:-11205543 Msa0055880:CDS
TCCATTGAGACCTGGTCCTA+TGG 0.429507 1_2:-11205517 Msa0055880:CDS
CCCATAATTGTTGGAGAGAT+CGG 0.432044 1_2:-11205633 Msa0055880:CDS
GATGGCGCTTGCAAATTTCC+CGG 0.432957 1_2:-11205141 Msa0055880:CDS
AACAGATCTCTTTGGATGGC+AGG 0.439544 1_2:+11208165 None:intergenic
GCATAGTCGACTGGAAAATT+GGG 0.440341 1_2:+11205774 None:intergenic
GCTCTTATAAAAGCTGGTTT+GGG 0.442512 1_2:-11205981 Msa0055880:CDS
ATAGTATAAAGCAAATCATT+TGG 0.452724 1_2:+11207721 None:intergenic
GGTAACATGCCCATAATTGT+TGG 0.454864 1_2:-11205642 Msa0055880:CDS
CAAAACGCTCTTATAAAAGC+TGG 0.455309 1_2:-11205987 Msa0055880:CDS
TGCGTTTAATAGCTACTATC+AGG 0.464738 1_2:-11205178 Msa0055880:CDS
CAGGTGAATGATCAGGTTGA+TGG 0.470214 1_2:-11205159 Msa0055880:CDS
TCAGCTCATGTTTCATCTGG+TGG 0.473275 1_2:-11207652 Msa0055880:CDS
CCGTTTCTGTCTCCGTCTGT+AGG 0.478583 1_2:+11205606 None:intergenic
GATGTGTATCAGAGCTCATC+AGG 0.478752 1_2:-11205924 Msa0055880:CDS
CTACTATCAGGTGAATGATC+AGG 0.483380 1_2:-11205166 Msa0055880:CDS
TGATACACATCAGCATTTGA+AGG 0.486649 1_2:+11205936 None:intergenic
GCGTTGAATAAGAATGGCTT+TGG 0.487733 1_2:-11205663 Msa0055880:CDS
AGTTGAAGAAGAGTTTGAAA+GGG 0.489250 1_2:+11208117 None:intergenic
GTTTGAAAGGGTATCTGAAA+AGG 0.491212 1_2:+11208129 None:intergenic
GTCAGTGACAGTAGAAAGAC+CGG 0.491584 1_2:+11205122 None:intergenic
TGACAGAGATCCTTCAACTC+AGG 0.492465 1_2:-11205103 Msa0055880:CDS
AAGTTGAAGAAGAGTTTGAA+AGG 0.492902 1_2:+11208116 None:intergenic
CCGAAATACCAACTCACCAT+TGG 0.493738 1_2:-11205399 Msa0055880:CDS
ATCTCTTTGGATGGCAGGGA+GGG 0.495901 1_2:+11208170 None:intergenic
CCCGTTGGTTCTTGATCCAA+TGG 0.499872 1_2:+11205383 None:intergenic
AATGCAGACTGCACTAGTCT+TGG 0.500089 1_2:-11205249 Msa0055880:CDS
ACCACAGTAGATGGTGGTAA+TGG 0.502268 1_2:+11207850 None:intergenic
TCCATAGGACCAGGTCTCAA+TGG 0.502603 1_2:+11205516 None:intergenic
CAATCTGAACCATGAGATCA+TGG 0.502886 1_2:+11205868 None:intergenic
GTCATTGAATTCTTGATGGA+GGG 0.508940 1_2:-11207976 Msa0055880:exon
GACTCGATTTATTGCCGGAA+AGG 0.519224 1_2:-11205544 Msa0055880:CDS
CAATGACGTTCAAAGTTACC+TGG 0.520270 1_2:+11205447 None:intergenic
GTCCTAAAGTCGCCATCGGA+AGG 0.521014 1_2:+11205897 None:intergenic
TCAAGAACCAACGGGCTAGT+AGG 0.521826 1_2:-11205375 Msa0055880:CDS
TGGAAGTGTTGTGGCTTCAA+AGG 0.524842 1_2:+11206025 None:intergenic
TGGATAAAGTAAACTGCCAA+AGG 0.529569 1_2:-11204942 Msa0055880:three_prime_UTR
TACAAGAGCTGGAAGTGTTG+TGG 0.534283 1_2:+11206016 None:intergenic
GCATAGCATAGAGACAGAAA+AGG 0.535755 1_2:+11208247 None:intergenic
GTATGGGCGTTGAATAAGAA+TGG 0.536944 1_2:-11205669 Msa0055880:CDS
GACAGACATCCATGATCTCA+TGG 0.543777 1_2:-11205877 Msa0055880:CDS
GGCTATGGAACTTCGTGTGG+CGG 0.546145 1_2:-11205228 Msa0055880:CDS
TTCTTGATCCAATGGTGAGT+TGG 0.549706 1_2:+11205391 None:intergenic
GGTCATTGAATTCTTGATGG+AGG 0.549863 1_2:-11207977 Msa0055880:exon
ATCACTGTTCAGGTTCGCTG+AGG 0.550563 1_2:+11205305 None:intergenic
ATTTGCCACATCATCAGTGT+TGG 0.551734 1_2:-11207917 Msa0055880:CDS
TCTGGTATTCAGGTTATGGT+TGG 0.552421 1_2:-11207748 Msa0055880:CDS
ACAGATCTCTTTGGATGGCA+GGG 0.555860 1_2:+11208166 None:intergenic
CACTTCCAACACTGATGATG+TGG 0.559904 1_2:+11207912 None:intergenic
AATAAAAGGATAAATGTTCA+CGG 0.560448 1_2:+11205812 None:intergenic
GATAAACAGATCTCTTTGGA+TGG 0.563729 1_2:+11208161 None:intergenic
AATGTGCAACCCTGAGTTGA+AGG 0.566126 1_2:+11205093 None:intergenic
CTTGGGCAAATGTGCTACTC+CGG 0.568572 1_2:+11205347 None:intergenic
TAATTGTTGGAGAGATCGGT+TGG 0.569155 1_2:-11205629 Msa0055880:CDS
CACATCATCAGTGTTGGAAG+TGG 0.569256 1_2:-11207911 Msa0055880:CDS
ACCATTGGATCAAGAACCAA+CGG 0.573644 1_2:-11205384 Msa0055880:CDS
TAAATCGAGTCATGAAACCT+TGG 0.576604 1_2:+11205556 None:intergenic
GACAGAGATCCTTCAACTCA+GGG 0.576853 1_2:-11205102 Msa0055880:CDS
GTCTGTCCTAAAGTCGCCAT+CGG 0.577196 1_2:+11205893 None:intergenic
TAACTATGATACTCTAGTAT+GGG 0.577250 1_2:-11205685 Msa0055880:CDS
CCGTTGTAAGTTGACAAGAA+AGG 0.578866 1_2:+11206050 None:intergenic
CTAAACAAGTATGCATCCAT+AGG 0.581623 1_2:+11205501 None:intergenic
GACTGCACTAGTCTTGGCTA+TGG 0.584565 1_2:-11205243 Msa0055880:CDS
CCTTTCTTGTCAACTTACAA+CGG 0.587520 1_2:-11206050 Msa0055880:CDS
TCCTAAAGTCGCCATCGGAA+GGG 0.589717 1_2:+11205898 None:intergenic
AACGGGCTAGTAGGTGCTAC+CGG 0.592787 1_2:-11205366 Msa0055880:CDS
GATACACATCAGCATTTGAA+GGG 0.593720 1_2:+11205937 None:intergenic
CTCGATTTATTGCCGGAAAG+GGG 0.594300 1_2:-11205542 Msa0055880:CDS
CCATTGGATCAAGAACCAAC+GGG 0.594581 1_2:-11205383 Msa0055880:CDS
CCTACAGACGGAGACAGAAA+CGG 0.595732 1_2:-11205606 Msa0055880:CDS
TCACTGTTCAGGTTCGCTGA+GGG 0.597689 1_2:+11205306 None:intergenic
CTTGGCTATGGAACTTCGTG+TGG 0.608758 1_2:-11205231 Msa0055880:CDS
AGTGATCCTTTAAACGACAA+CGG 0.610182 1_2:-11205735 Msa0055880:CDS
TCATCAGTGTTGGAAGTGGG+TGG 0.618212 1_2:-11207907 Msa0055880:CDS
TAGCACATTTGCCCAAGAAG+TGG 0.619134 1_2:-11205341 Msa0055880:CDS
AAGTATGCATCCATAGGACC+AGG 0.624541 1_2:+11205507 None:intergenic
TCATCAGGTAACCCTTCCGA+TGG 0.628858 1_2:-11205909 Msa0055880:CDS
GAGATCGGTTGGCCTACAGA+CGG 0.643611 1_2:-11205618 Msa0055880:CDS
GGTAACTTTGAACGTCATTG+GGG 0.647034 1_2:-11205444 Msa0055880:CDS
CAAAGGAAAACTGATTGTTG+AGG 0.649345 1_2:-11204925 Msa0055880:three_prime_UTR
GATCTCTTTGGATGGCAGGG+AGG 0.651852 1_2:+11208169 None:intergenic
GGTAGCACCTACTAGCCCGT+TGG 0.654363 1_2:+11205368 None:intergenic
AAGGGGACTCCATTGAGACC+TGG 0.654522 1_2:-11205525 Msa0055880:CDS
TGGCAAGCATAAGACACACT+CGG 0.661204 1_2:+11205273 None:intergenic
ACATCATCAGTGTTGGAAGT+GGG 0.662999 1_2:-11207910 Msa0055880:CDS
AAGAGATTCGATTCTCCTCG+CGG 0.664201 1_2:+11205047 None:intergenic
TCCATTACCACCATCTACTG+TGG 0.670093 1_2:-11207851 Msa0055880:CDS
GACAACAAAAGCATTCAACC+AGG 0.676173 1_2:-11205465 Msa0055880:CDS
GGTGGAATTGGAGTGAACTG+GGG 0.692379 1_2:-11207889 Msa0055880:CDS
TGTGGCGGTTTAGATATCCG+TGG 0.708567 1_2:-11205213 Msa0055880:CDS
TCAGTGACAGTAGAAAGACC+GGG 0.731431 1_2:+11205123 None:intergenic
ACGCATATGAGATGTTACCA+CGG 0.737125 1_2:+11205196 None:intergenic
TGATCCAAACTGATTCCGCG+AGG 0.757114 1_2:-11205062 Msa0055880:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTACATCAATATAAAA+AGG + chr1_2:11206808-11206827 None:intergenic 10.0%
!!! TTTTATATTGATGTAAAATA+CGG - chr1_2:11206808-11206827 Msa0055880:intron 10.0%
!!! TATTTATTTATTCTGCATTT+TGG - chr1_2:11205542-11205561 Msa0055880:CDS 15.0%
!!! GTAAAAAGTAAACTTTTTTA+TGG + chr1_2:11205614-11205633 None:intergenic 15.0%
!! AAATTAGACAAAATTTATGT+AGG - chr1_2:11205679-11205698 Msa0055880:CDS 15.0%
!! AATTAGACAAAATTTATGTA+GGG - chr1_2:11205680-11205699 Msa0055880:CDS 15.0%
!!! GTTAAATATGATTTTACTTA+GGG + chr1_2:11205879-11205898 None:intergenic 15.0%
!!! AATTCAATTTTGAAGATTAA+TGG - chr1_2:11206209-11206228 Msa0055880:intron 15.0%
!! TTTATATTGATGTAAAATAC+GGG - chr1_2:11206809-11206828 Msa0055880:intron 15.0%
!!! ATTTCATGTAATTTTTTTCA+AGG - chr1_2:11206984-11207003 Msa0055880:intron 15.0%
!! TCAAATATGAAGCTAAAAAA+TGG + chr1_2:11205047-11205066 None:intergenic 20.0%
!!! AAGTTTTGATTTTTTCAACT+TGG - chr1_2:11205080-11205099 Msa0055880:CDS 20.0%
!! GTGAAAATGTTAAAAGATAA+TGG - chr1_2:11205249-11205268 Msa0055880:CDS 20.0%
!! ATAGTATAAAGCAAATCATT+TGG + chr1_2:11205360-11205379 None:intergenic 20.0%
!!! AAATGATTTGCTTTATACTA+TGG - chr1_2:11205359-11205378 Msa0055880:CDS 20.0%
!!! ATCACTATTTTTCTTTTGTA+GGG + chr1_2:11205657-11205676 None:intergenic 20.0%
!!! AATCACTATTTTTCTTTTGT+AGG + chr1_2:11205658-11205677 None:intergenic 20.0%
!!! GGTTAAATATGATTTTACTT+AGG + chr1_2:11205880-11205899 None:intergenic 20.0%
!! TTACTTTACTTGTATATAGA+TGG + chr1_2:11205901-11205920 None:intergenic 20.0%
!! AAACAAATAGAAAAACAAAC+AGG + chr1_2:11206368-11206387 None:intergenic 20.0%
!! TCTACAAATCATAGAATATT+TGG - chr1_2:11206449-11206468 Msa0055880:intron 20.0%
!!! GATTTTTTCAACAACTTTTT+TGG - chr1_2:11206480-11206499 Msa0055880:intron 20.0%
!! TTAATTAAAACATTGACAAC+AGG + chr1_2:11206629-11206648 None:intergenic 20.0%
!!! GTCAATGTTTTAATTAAATG+AGG - chr1_2:11206632-11206651 Msa0055880:intron 20.0%
!!! ATCATATATTTTTCCTTAAC+AGG + chr1_2:11206694-11206713 None:intergenic 20.0%
!!! TTTTTCATTTCTTAATCTGT+TGG - chr1_2:11206872-11206891 Msa0055880:intron 20.0%
!!! TTTTCATTTCTTAATCTGTT+GGG - chr1_2:11206873-11206892 Msa0055880:intron 20.0%
!!! ATTTTTTTCAAGGTATATTG+CGG - chr1_2:11206994-11207013 Msa0055880:intron 20.0%
!! AATAAAAGGATAAATGTTCA+CGG + chr1_2:11207269-11207288 None:intergenic 20.0%
!! TCTTCATAAAGACTAATAAA+AGG + chr1_2:11207283-11207302 None:intergenic 20.0%
!! CTTAAATACTATTAAGATTC+TGG - chr1_2:11208097-11208116 Msa0055880:five_prime_UTR 20.0%
!!! CTGGATTTTTAATTCATTTT+TGG - chr1_2:11208116-11208135 Msa0055880:five_prime_UTR 20.0%
!! TAGCAACTTAAAATAATTGT+TGG - chr1_2:11208265-11208284 Msa0055880:five_prime_UTR 20.0%
!!! ACTTTTATGCTTTAAAAGTG+AGG + chr1_2:11204870-11204889 None:intergenic 25.0%
! AAAAGATAAACAGATCTCTT+TGG + chr1_2:11204924-11204943 None:intergenic 25.0%
!!! TTTTTCTGTTTTTGTTGCTT+GGG + chr1_2:11205023-11205042 None:intergenic 25.0%
!!! TTTTTTCTGTTTTTGTTGCT+TGG + chr1_2:11205024-11205043 None:intergenic 25.0%
!! TTCAAAGCATCAAGAATATT+TGG + chr1_2:11205306-11205325 None:intergenic 25.0%
!! TGTGTTGAGTTTTTAATCTT+TGG - chr1_2:11205485-11205504 Msa0055880:CDS 25.0%
!! ATATGATTTTACTTAGGGAA+GGG + chr1_2:11205874-11205893 None:intergenic 25.0%
!! AATATGATTTTACTTAGGGA+AGG + chr1_2:11205875-11205894 None:intergenic 25.0%
!! CAACACATCAAGTATTTTAT+TGG - chr1_2:11205984-11206003 Msa0055880:CDS 25.0%
!! ACATCAAGTATTTTATTGGA+AGG - chr1_2:11205988-11206007 Msa0055880:CDS 25.0%
!! AAGTATTTTATTGGAAGGAA+AGG - chr1_2:11205993-11206012 Msa0055880:CDS 25.0%
!! AGTATTTTATTGGAAGGAAA+GGG - chr1_2:11205994-11206013 Msa0055880:CDS 25.0%
!! TTTAGTAAGAAAGTTTTTGC+AGG - chr1_2:11206046-11206065 Msa0055880:CDS 25.0%
!! TTTTTGCAGGAACTTTTTAT+AGG - chr1_2:11206059-11206078 Msa0055880:CDS 25.0%
! ATTTGTAGATGAAGAATCAA+GGG + chr1_2:11206438-11206457 None:intergenic 25.0%
! TGATTAAATTTAGCTGCAAA+AGG - chr1_2:11206553-11206572 Msa0055880:intron 25.0%
! GATTAAATTTAGCTGCAAAA+GGG - chr1_2:11206554-11206573 Msa0055880:intron 25.0%
!! ATATGTCTTCCTAACTTTTT+GGG - chr1_2:11206750-11206769 Msa0055880:intron 25.0%
! AGTCATTTGTTTAACAGTTA+AGG + chr1_2:11206912-11206931 None:intergenic 25.0%
! TAACTATGATACTCTAGTAT+GGG - chr1_2:11207393-11207412 Msa0055880:intron 25.0%
!!! AATAGTACTGTTTGCTTTTT+TGG - chr1_2:11208056-11208075 Msa0055880:five_prime_UTR 25.0%
! GACAAAATTTCCTTAAAATC+TGG - chr1_2:11208212-11208231 Msa0055880:five_prime_UTR 25.0%
!! AATCTGAATTCCAGATTTTA+AGG + chr1_2:11208225-11208244 None:intergenic 25.0%
ATAGAGACAGAAAAGGTAAT+TGG + chr1_2:11204827-11204846 None:intergenic 30.0%
AGTTGAAGAAGAGTTTGAAA+GGG + chr1_2:11204964-11204983 None:intergenic 30.0%
AAGTTGAAGAAGAGTTTGAA+AGG + chr1_2:11204965-11204984 None:intergenic 30.0%
TGATGGAGGGTAAAAAATTT+AGG - chr1_2:11205115-11205134 Msa0055880:CDS 30.0%
TTTGAAGAAATCTGGTATTC+AGG - chr1_2:11205320-11205339 Msa0055880:CDS 30.0%
GGTTATGATTGTTTCAAACT+AGG - chr1_2:11205563-11205582 Msa0055880:CDS 30.0%
AGTGAAGACATATTTAACCA+AGG - chr1_2:11205740-11205759 Msa0055880:CDS 30.0%
GTGAAGACATATTTAACCAA+GGG - chr1_2:11205741-11205760 Msa0055880:CDS 30.0%
GACAAGTAATTTCCATACAT+CGG + chr1_2:11206278-11206297 None:intergenic 30.0%
! TGTGTTTGAAATCATTGACT+AGG - chr1_2:11206332-11206351 Msa0055880:intron 30.0%
AGTTATAATGTCTGCCAAAA+AGG - chr1_2:11206406-11206425 Msa0055880:intron 30.0%
TTTGTAGATGAAGAATCAAG+GGG + chr1_2:11206437-11206456 None:intergenic 30.0%
GATTTGTAGATGAAGAATCA+AGG + chr1_2:11206439-11206458 None:intergenic 30.0%
! AGATTTTATGCATGCAACAA+AGG + chr1_2:11206722-11206741 None:intergenic 30.0%
GTTGCATGCATAAAATCTAA+AGG - chr1_2:11206724-11206743 Msa0055880:intron 30.0%
! GATATGTCTTCCTAACTTTT+TGG - chr1_2:11206749-11206768 Msa0055880:intron 30.0%
! TATGTCTTCCTAACTTTTTG+GGG - chr1_2:11206751-11206770 Msa0055880:intron 30.0%
! TTTTGGATATTTACAAGAGC+TGG + chr1_2:11207076-11207095 None:intergenic 30.0%
CTAACTATGATACTCTAGTA+TGG - chr1_2:11207392-11207411 Msa0055880:intron 30.0%
!! GATTGTTTTATTACGATGGA+CGG - chr1_2:11207656-11207675 Msa0055880:CDS 30.0%
TTCAAAATACACCACTTCTT+GGG + chr1_2:11207751-11207770 None:intergenic 30.0%
TTTCAAAATACACCACTTCT+TGG + chr1_2:11207752-11207771 None:intergenic 30.0%
AATCAGTTTGGATCATGATT+TGG + chr1_2:11208011-11208030 None:intergenic 30.0%
!!! GGAGGGACTTTTTTATGTTA+TGG + chr1_2:11204894-11204913 None:intergenic 35.0%
GATAAACAGATCTCTTTGGA+TGG + chr1_2:11204920-11204939 None:intergenic 35.0%
!! GTTTGAAAGGGTATCTGAAA+AGG + chr1_2:11204952-11204971 None:intergenic 35.0%
CTTGGTCATTGAATTCTTGA+TGG - chr1_2:11205098-11205117 Msa0055880:CDS 35.0%
GTCATTGAATTCTTGATGGA+GGG - chr1_2:11205102-11205121 Msa0055880:CDS 35.0%
! AACATTTTCACCACAGTAGA+TGG + chr1_2:11205240-11205259 None:intergenic 35.0%
!! CTTGATGCTTTGAAGAAATC+TGG - chr1_2:11205312-11205331 Msa0055880:CDS 35.0%
! GAAATCTGGTATTCAGGTTA+TGG - chr1_2:11205326-11205345 Msa0055880:CDS 35.0%
TGATTGTTTCAAACTAGGAG+AGG - chr1_2:11205568-11205587 Msa0055880:CDS 35.0%
TCTCTTGAACAATTCGTCTT+TGG + chr1_2:11205795-11205814 None:intergenic 35.0%
! TGCAGGAACTTTTTATAGGA+TGG - chr1_2:11206063-11206082 Msa0055880:CDS 35.0%
AGTATGTATTGCTGTGAGTT+TGG - chr1_2:11206151-11206170 Msa0055880:intron 35.0%
ACTAAGATACTTCCGATGTA+TGG - chr1_2:11206263-11206282 Msa0055880:intron 35.0%
GAAATTACTTGTCGTTCCTT+TGG - chr1_2:11206285-11206304 Msa0055880:intron 35.0%
GATTCCACTAAGTATTCCAA+AGG + chr1_2:11206304-11206323 None:intergenic 35.0%
!! CAACAGGTTGATATTTGTAC+AGG + chr1_2:11206613-11206632 None:intergenic 35.0%
AATTTCACACTGACCTGTTA+AGG - chr1_2:11206678-11206697 Msa0055880:intron 35.0%
! ATGTCTTCCTAACTTTTTGG+GGG - chr1_2:11206752-11206771 Msa0055880:intron 35.0%
ATGTAAAATACGGGCAATTG+CGG - chr1_2:11206818-11206837 Msa0055880:intron 35.0%
!! TTTTCAAGGTATATTGCGGT+TGG - chr1_2:11206998-11207017 Msa0055880:intron 35.0%
CCTTTCTTGTCAACTTACAA+CGG - chr1_2:11207028-11207047 Msa0055880:intron 35.0%
!!! CAGCTTTTATAAGAGCGTTT+TGG + chr1_2:11207093-11207112 None:intergenic 35.0%
CAAAACGCTCTTATAAAAGC+TGG - chr1_2:11207091-11207110 Msa0055880:intron 35.0%
! GCTCTTATAAAAGCTGGTTT+GGG - chr1_2:11207097-11207116 Msa0055880:intron 35.0%
GATACACATCAGCATTTGAA+GGG + chr1_2:11207144-11207163 None:intergenic 35.0%
TGATACACATCAGCATTTGA+AGG + chr1_2:11207145-11207164 None:intergenic 35.0%
GGATAAATGTTCACGGTAAA+TGG + chr1_2:11207262-11207281 None:intergenic 35.0%
TTGAAAAATGCATAGTCGAC+TGG + chr1_2:11207316-11207335 None:intergenic 35.0%
!! GTCGACTATGCATTTTTCAA+CGG - chr1_2:11207316-11207335 Msa0055880:intron 35.0%
AGTGATCCTTTAAACGACAA+CGG - chr1_2:11207343-11207362 Msa0055880:intron 35.0%
! ATCTTTCCGTTGTCGTTTAA+AGG + chr1_2:11207352-11207371 None:intergenic 35.0%
TAAATCGAGTCATGAAACCT+TGG + chr1_2:11207525-11207544 None:intergenic 35.0%
TTCATGACTCGATTTATTGC+CGG - chr1_2:11207529-11207548 Msa0055880:intron 35.0%
CTAAACAAGTATGCATCCAT+AGG + chr1_2:11207580-11207599 None:intergenic 35.0%
AGGTAACTTTGAACGTCATT+GGG - chr1_2:11207633-11207652 Msa0055880:intron 35.0%
!! TGGGGATTGTTTTATTACGA+TGG - chr1_2:11207652-11207671 Msa0055880:CDS 35.0%
TGCGTTTAATAGCTACTATC+AGG - chr1_2:11207900-11207919 Msa0055880:CDS 35.0%
TGGATAAAGTAAACTGCCAA+AGG - chr1_2:11208136-11208155 Msa0055880:five_prime_UTR 35.0%
! CTCAACAATCAGTTTTCCTT+TGG + chr1_2:11208155-11208174 None:intergenic 35.0%
CAAAGGAAAACTGATTGTTG+AGG - chr1_2:11208153-11208172 Msa0055880:five_prime_UTR 35.0%
GCATAGCATAGAGACAGAAA+AGG + chr1_2:11204834-11204853 None:intergenic 40.0%
!! TGTTTTTGTTGCTTGGGTGA+AGG + chr1_2:11205017-11205036 None:intergenic 40.0%
GGTCATTGAATTCTTGATGG+AGG - chr1_2:11205101-11205120 Msa0055880:CDS 40.0%
ATTTGCCACATCATCAGTGT+TGG - chr1_2:11205161-11205180 Msa0055880:CDS 40.0%
! ACATCATCAGTGTTGGAAGT+GGG - chr1_2:11205168-11205187 Msa0055880:CDS 40.0%
! ATTTTCACCACAGTAGATGG+TGG + chr1_2:11205237-11205256 None:intergenic 40.0%
! TCTGGTATTCAGGTTATGGT+TGG - chr1_2:11205330-11205349 Msa0055880:CDS 40.0%
TCGTCAAGCTGCTGAAAAAT+GGG - chr1_2:11205389-11205408 Msa0055880:CDS 40.0%
GTTTCAGCTCATGTTTCATC+TGG - chr1_2:11205423-11205442 Msa0055880:CDS 40.0%
GGAGAGGTGAGAAATTATAG+TGG - chr1_2:11205584-11205603 Msa0055880:CDS 40.0%
!! CGTTCCTTTGGAATACTTAG+TGG - chr1_2:11206297-11206316 Msa0055880:intron 40.0%
GATATTTGTACAGGTGGACA+AGG + chr1_2:11206604-11206623 None:intergenic 40.0%
!! CAGGTTGATATTTGTACAGG+TGG + chr1_2:11206610-11206629 None:intergenic 40.0%
TGTAAAATACGGGCAATTGC+GGG - chr1_2:11206819-11206838 Msa0055880:intron 40.0%
! CCGTTGTAAGTTGACAAGAA+AGG + chr1_2:11207031-11207050 None:intergenic 40.0%
CGCTCTTATAAAAGCTGGTT+TGG - chr1_2:11207096-11207115 Msa0055880:intron 40.0%
CAATCTGAACCATGAGATCA+TGG + chr1_2:11207213-11207232 None:intergenic 40.0%
GCATAGTCGACTGGAAAATT+GGG + chr1_2:11207307-11207326 None:intergenic 40.0%
TGCATAGTCGACTGGAAAAT+TGG + chr1_2:11207308-11207327 None:intergenic 40.0%
!! GTATGGGCGTTGAATAAGAA+TGG - chr1_2:11207409-11207428 Msa0055880:intron 40.0%
GCGTTGAATAAGAATGGCTT+TGG - chr1_2:11207415-11207434 Msa0055880:intron 40.0%
GGTAACATGCCCATAATTGT+TGG - chr1_2:11207436-11207455 Msa0055880:intron 40.0%
CCGATCTCTCCAACAATTAT+GGG + chr1_2:11207448-11207467 None:intergenic 40.0%
CCCATAATTGTTGGAGAGAT+CGG - chr1_2:11207445-11207464 Msa0055880:intron 40.0%
ACCGATCTCTCCAACAATTA+TGG + chr1_2:11207449-11207468 None:intergenic 40.0%
TAATTGTTGGAGAGATCGGT+TGG - chr1_2:11207449-11207468 Msa0055880:intron 40.0%
ACTCGATTTATTGCCGGAAA+GGG - chr1_2:11207535-11207554 Msa0055880:intron 40.0%
!! GACAACAAAAGCATTCAACC+AGG - chr1_2:11207613-11207632 Msa0055880:intron 40.0%
CAATGACGTTCAAAGTTACC+TGG + chr1_2:11207634-11207653 None:intergenic 40.0%
CAGGTAACTTTGAACGTCAT+TGG - chr1_2:11207632-11207651 Msa0055880:intron 40.0%
GGTAACTTTGAACGTCATTG+GGG - chr1_2:11207634-11207653 Msa0055880:intron 40.0%
!! CCAATGGTGAGTTGGTATTT+CGG + chr1_2:11207682-11207701 None:intergenic 40.0%
TTCTTGATCCAATGGTGAGT+TGG + chr1_2:11207690-11207709 None:intergenic 40.0%
ACCATTGGATCAAGAACCAA+CGG - chr1_2:11207694-11207713 Msa0055880:CDS 40.0%
ACGCATATGAGATGTTACCA+CGG + chr1_2:11207885-11207904 None:intergenic 40.0%
CTACTATCAGGTGAATGATC+AGG - chr1_2:11207912-11207931 Msa0055880:CDS 40.0%
ACAGATCTCTTTGGATGGCA+GGG + chr1_2:11204915-11204934 None:intergenic 45.0%
AACAGATCTCTTTGGATGGC+AGG + chr1_2:11204916-11204935 None:intergenic 45.0%
GCTTGGGTGAAGGACTAAAA+TGG + chr1_2:11205007-11205026 None:intergenic 45.0%
! CACTTCCAACACTGATGATG+TGG + chr1_2:11205169-11205188 None:intergenic 45.0%
! CACATCATCAGTGTTGGAAG+TGG - chr1_2:11205167-11205186 Msa0055880:CDS 45.0%
TCCATTACCACCATCTACTG+TGG - chr1_2:11205227-11205246 Msa0055880:CDS 45.0%
! ACCACAGTAGATGGTGGTAA+TGG + chr1_2:11205231-11205250 None:intergenic 45.0%
GTCGTCAAGCTGCTGAAAAA+TGG - chr1_2:11205388-11205407 Msa0055880:CDS 45.0%
TCAGCTCATGTTTCATCTGG+TGG - chr1_2:11205426-11205445 Msa0055880:CDS 45.0%
CATCTGGTGGAGTAGATATC+AGG - chr1_2:11205439-11205458 Msa0055880:CDS 45.0%
TGGTGGAGTAGATATCAGGT+TGG - chr1_2:11205443-11205462 Msa0055880:CDS 45.0%
!! ACTTCTAGAGCTCAATCCCT+TGG + chr1_2:11205760-11205779 None:intergenic 45.0%
TGACGGCCAACCAAATTACA+AGG - chr1_2:11205847-11205866 Msa0055880:CDS 45.0%
GACGGCCAACCAAATTACAA+GGG - chr1_2:11205848-11205867 Msa0055880:CDS 45.0%
AAGGGCCCTTGTAATTTGGT+TGG + chr1_2:11205856-11205875 None:intergenic 45.0%
GAGTCAAATGCAGAAGAGAG+GGG + chr1_2:11206115-11206134 None:intergenic 45.0%
CGAGTCAAATGCAGAAGAGA+GGG + chr1_2:11206116-11206135 None:intergenic 45.0%
CCTCTCTTCTGCATTTGACT+CGG - chr1_2:11206114-11206133 Msa0055880:intron 45.0%
TGTATTGCTGTGAGTTTGGC+AGG - chr1_2:11206155-11206174 Msa0055880:intron 45.0%
!! ATCAAGGGGCATGTCCTTTT+TGG + chr1_2:11206423-11206442 None:intergenic 45.0%
CTTGCTTGCACTGAATTCAG+TGG - chr1_2:11206523-11206542 Msa0055880:intron 45.0%
GTACAGGTGGACAAGGATTT+AGG + chr1_2:11206597-11206616 None:intergenic 45.0%
GTAAAATACGGGCAATTGCG+GGG - chr1_2:11206820-11206839 Msa0055880:intron 45.0%
!! TGGAAGTGTTGTGGCTTCAA+AGG + chr1_2:11207056-11207075 None:intergenic 45.0%
!! TACAAGAGCTGGAAGTGTTG+TGG + chr1_2:11207065-11207084 None:intergenic 45.0%
GATGTGTATCAGAGCTCATC+AGG - chr1_2:11207154-11207173 Msa0055880:intron 45.0%
GACAGACATCCATGATCTCA+TGG - chr1_2:11207201-11207220 Msa0055880:intron 45.0%
GACTCGATTTATTGCCGGAA+AGG - chr1_2:11207534-11207553 Msa0055880:intron 45.0%
CTCGATTTATTGCCGGAAAG+GGG - chr1_2:11207536-11207555 Msa0055880:intron 45.0%
AAGTATGCATCCATAGGACC+AGG + chr1_2:11207574-11207593 None:intergenic 45.0%
CCGAAATACCAACTCACCAT+TGG - chr1_2:11207679-11207698 Msa0055880:CDS 45.0%
CCATTGGATCAAGAACCAAC+GGG - chr1_2:11207695-11207714 Msa0055880:CDS 45.0%
TAGCACATTTGCCCAAGAAG+TGG - chr1_2:11207737-11207756 Msa0055880:CDS 45.0%
GTGCAACTTGATCACTGTTC+AGG + chr1_2:11207786-11207805 None:intergenic 45.0%
TGGCAAGCATAAGACACACT+CGG + chr1_2:11207808-11207827 None:intergenic 45.0%
! GACTAGTGCAGTCTGCATTT+TGG + chr1_2:11207828-11207847 None:intergenic 45.0%
! AATGCAGACTGCACTAGTCT+TGG - chr1_2:11207829-11207848 Msa0055880:CDS 45.0%
!! CAGGTGAATGATCAGGTTGA+TGG - chr1_2:11207919-11207938 Msa0055880:CDS 45.0%
TCAGTGACAGTAGAAAGACC+GGG + chr1_2:11207958-11207977 None:intergenic 45.0%
GTCAGTGACAGTAGAAAGAC+CGG + chr1_2:11207959-11207978 None:intergenic 45.0%
TGACAGAGATCCTTCAACTC+AGG - chr1_2:11207975-11207994 Msa0055880:exon 45.0%
GACAGAGATCCTTCAACTCA+GGG - chr1_2:11207976-11207995 Msa0055880:exon 45.0%
! AATGTGCAACCCTGAGTTGA+AGG + chr1_2:11207988-11208007 None:intergenic 45.0%
AAGAGATTCGATTCTCCTCG+CGG + chr1_2:11208034-11208053 None:intergenic 45.0%
ATCTCTTTGGATGGCAGGGA+GGG + chr1_2:11204911-11204930 None:intergenic 50.0%
! TCATCAGTGTTGGAAGTGGG+TGG - chr1_2:11205171-11205190 Msa0055880:CDS 50.0%
GTGTTGGAAGTGGGTGGAAT+TGG - chr1_2:11205177-11205196 Msa0055880:CDS 50.0%
TGGGTGGAATTGGAGTGAAC+TGG - chr1_2:11205187-11205206 Msa0055880:CDS 50.0%
GGGTGGAATTGGAGTGAACT+GGG - chr1_2:11205188-11205207 Msa0055880:CDS 50.0%
GGTGGAATTGGAGTGAACTG+GGG - chr1_2:11205189-11205208 Msa0055880:CDS 50.0%
GAGAACCTGAGTTCGATTCC+TGG - chr1_2:11205811-11205830 Msa0055880:CDS 50.0%
ACCTGAGTTCGATTCCTGGT+TGG - chr1_2:11205815-11205834 Msa0055880:CDS 50.0%
CCTGAGTTCGATTCCTGGTT+GGG - chr1_2:11205816-11205835 Msa0055880:CDS 50.0%
CTGGTTGGGACGATTCTTGA+CGG - chr1_2:11205830-11205849 Msa0055880:CDS 50.0%
AGGGAAGGGCCCTTGTAATT+TGG + chr1_2:11205860-11205879 None:intergenic 50.0%
CCGAGTCAAATGCAGAAGAG+AGG + chr1_2:11206117-11206136 None:intergenic 50.0%
CACTCAGCCCCCAAAAAGTT+AGG + chr1_2:11206762-11206781 None:intergenic 50.0%
TCATCAGGTAACCCTTCCGA+TGG - chr1_2:11207169-11207188 Msa0055880:intron 50.0%
TCCTAAAGTCGCCATCGGAA+GGG + chr1_2:11207183-11207202 None:intergenic 50.0%
GTCTGTCCTAAAGTCGCCAT+CGG + chr1_2:11207188-11207207 None:intergenic 50.0%
CCTACAGACGGAGACAGAAA+CGG - chr1_2:11207472-11207491 Msa0055880:intron 50.0%
!! CTCGCGCAACGTTTTAACCA+AGG - chr1_2:11207505-11207524 Msa0055880:intron 50.0%
TCTCAATGGAGTCCCCTTTC+CGG + chr1_2:11207551-11207570 None:intergenic 50.0%
TCCATTGAGACCTGGTCCTA+TGG - chr1_2:11207561-11207580 Msa0055880:intron 50.0%
TCCATAGGACCAGGTCTCAA+TGG + chr1_2:11207565-11207584 None:intergenic 50.0%
!! CCCGTTGGTTCTTGATCCAA+TGG + chr1_2:11207698-11207717 None:intergenic 50.0%
!! TCAAGAACCAACGGGCTAGT+AGG - chr1_2:11207703-11207722 Msa0055880:CDS 50.0%
! CTTGGGCAAATGTGCTACTC+CGG + chr1_2:11207734-11207753 None:intergenic 50.0%
! TCACTGTTCAGGTTCGCTGA+GGG + chr1_2:11207775-11207794 None:intergenic 50.0%
! ATCACTGTTCAGGTTCGCTG+AGG + chr1_2:11207776-11207795 None:intergenic 50.0%
!! GACTGCACTAGTCTTGGCTA+TGG - chr1_2:11207835-11207854 Msa0055880:CDS 50.0%
CTTGGCTATGGAACTTCGTG+TGG - chr1_2:11207847-11207866 Msa0055880:CDS 50.0%
TGTGGCGGTTTAGATATCCG+TGG - chr1_2:11207865-11207884 Msa0055880:CDS 50.0%
GATGGCGCTTGCAAATTTCC+CGG - chr1_2:11207937-11207956 Msa0055880:CDS 50.0%
! TGATCCAAACTGATTCCGCG+AGG - chr1_2:11208016-11208035 Msa0055880:five_prime_UTR 50.0%
TTCTCCTCGCGGAATCAGTT+TGG + chr1_2:11208023-11208042 None:intergenic 50.0%
GATCTCTTTGGATGGCAGGG+AGG + chr1_2:11204912-11204931 None:intergenic 55.0%
CCCAACCAGGAATCGAACTC+AGG + chr1_2:11205819-11205838 None:intergenic 55.0%
CGTCAAGAATCGTCCCAACC+AGG + chr1_2:11205832-11205851 None:intergenic 55.0%
!! CTTTTTGGGGGCTGAGTGCA+TGG - chr1_2:11206764-11206783 Msa0055880:intron 55.0%
ACCCTTCCGATGGCGACTTT+AGG - chr1_2:11207179-11207198 Msa0055880:intron 55.0%
GTCCTAAAGTCGCCATCGGA+AGG + chr1_2:11207184-11207203 None:intergenic 55.0%
!! GAGATCGGTTGGCCTACAGA+CGG - chr1_2:11207460-11207479 Msa0055880:intron 55.0%
CCGTTTCTGTCTCCGTCTGT+AGG + chr1_2:11207475-11207494 None:intergenic 55.0%
AAGGGGACTCCATTGAGACC+TGG - chr1_2:11207553-11207572 Msa0055880:intron 55.0%
!! AACGGGCTAGTAGGTGCTAC+CGG - chr1_2:11207712-11207731 Msa0055880:CDS 55.0%
GGCTATGGAACTTCGTGTGG+CGG - chr1_2:11207850-11207869 Msa0055880:CDS 55.0%
GGTAGCACCTACTAGCCCGT+TGG + chr1_2:11207713-11207732 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 11204812 11208288 11204812 ID=Msa0055880;Name=Msa0055880
chr1_2 mRNA 11204812 11208288 11204812 ID=Msa0055880-mRNA-1;Parent=Msa0055880;Name=Msa0055880-mRNA-1;_AED=0.00;_eAED=0.00;_QI=305|1|1|1|1|1|2|193|477
chr1_2 exon 11204812 11206094 11204812 ID=Msa0055880-mRNA-1:exon:4280;Parent=Msa0055880-mRNA-1
chr1_2 exon 11207640 11208288 11207640 ID=Msa0055880-mRNA-1:exon:4279;Parent=Msa0055880-mRNA-1
chr1_2 five_prime_UTR 11207984 11208288 11207984 ID=Msa0055880-mRNA-1:five_prime_utr;Parent=Msa0055880-mRNA-1
chr1_2 CDS 11207640 11207983 11207640 ID=Msa0055880-mRNA-1:cds;Parent=Msa0055880-mRNA-1
chr1_2 CDS 11205005 11206094 11205005 ID=Msa0055880-mRNA-1:cds;Parent=Msa0055880-mRNA-1
chr1_2 three_prime_UTR 11204812 11205004 11204812 ID=Msa0055880-mRNA-1:three_prime_utr;Parent=Msa0055880-mRNA-1
Gene Sequence

>Msa0055880

ATGGAGGGTAAAAAATTTAGGATATGTTTAGTTCTTATGATGTTATTTGCCACATCATCAGTGTTGGAAGTGGGTGGAATTGGAGTGAACTGGGGAACACAGTCAACACATCCATTACCACCATCTACTGTGGTGAAAATGTTAAAAGATAATGGTATTCAAAAAGTTAAGCTTTTTGATGCTGATCCAAATATTCTTGATGCTTTGAAGAAATCTGGTATTCAGGTTATGGTTGGTATACCAAATGATTTGCTTTATACTATGGCTAATAGTCGTCAAGCTGCTGAAAAATGGGTTGCTAAGAATGTTTCAGCTCATGTTTCATCTGGTGGAGTAGATATCAGGTATATTGCGGTTGGAAATGAACCTTTCTTGTCAACTTACAACGGTACCTTTGAAGCCACAACACTTCCAGCTCTTGTAAATATCCAAAACGCTCTTATAAAAGCTGGTTTGGGAAGTTCAATCAAAGTCACTGTCCCTTCAAATGCTGATGTGTATCAGAGCTCATCAGGTAACCCTTCCGATGGCGACTTTAGGACAGACATCCATGATCTCATGGTTCAGATTGTCAAGTTTTTGAGTCAGAACAATGCTCCATTTACCGTGAACATTTATCCTTTTATTAGTCTTTATGAAGATCCCAATTTTCCAGTCGACTATGCATTTTTCAACGGTTTTAGTGATCCTTTAAACGACAACGGAAAGATCTACGACAATGTCTTTGATGCTAACTATGATACTCTAGTATGGGCGTTGAATAAGAATGGCTTTGGTAACATGCCCATAATTGTTGGAGAGATCGGTTGGCCTACAGACGGAGACAGAAACGGAAATCTTCAACTCGCGCAACGTTTTAACCAAGGTTTCATGACTCGATTTATTGCCGGAAAGGGGACTCCATTGAGACCTGGTCCTATGGATGCATACTTGTTTAGTTTAGTAGATGAAGACAACAAAAGCATTCAACCAGGTAACTTTGAACGTCATTGGGGATTGTTTTATTACGATGGACGGCCGAAATACCAACTCACCATTGGATCAAGAACCAACGGGCTAGTAGGTGCTACCGGAGTAGCACATTTGCCCAAGAAGTGGTGTATTTTGAAACCCTCAGCGAACCTGAACAGTGATCAAGTTGCACCGAGTGTGTCTTATGCTTGCCAAAATGCAGACTGCACTAGTCTTGGCTATGGAACTTCGTGTGGCGGTTTAGATATCCGTGGTAACATCTCATATGCGTTTAATAGCTACTATCAGGTGAATGATCAGGTTGATGGCGCTTGCAAATTTCCCGGTCTTTCTACTGTCACTGACAGAGATCCTTCAACTCAGGGTTGCACATTCCAAATCATGATCCAAACTGATTCCGCGAGGAGAATCGAATCTCTTAGAATAGTACTGTTTGCTTTTTTGGTTGTTGCTTTTTTGTAA
Protein sequence

>Msa0055880

MEGKKFRICLVLMMLFATSSVLEVGGIGVNWGTQSTHPLPPSTVVKMLKDNGIQKVKLFDADPNILDALKKSGIQVMVGIPNDLLYTMANSRQAAEKWVAKNVSAHVSSGGVDIRYIAVGNEPFLSTYNGTFEATTLPALVNIQNALIKAGLGSSIKVTVPSNADVYQSSSGNPSDGDFRTDIHDLMVQIVKFLSQNNAPFTVNIYPFISLYEDPNFPVDYAFFNGFSDPLNDNGKIYDNVFDANYDTLVWALNKNGFGNMPIIVGEIGWPTDGDRNGNLQLAQRFNQGFMTRFIAGKGTPLRPGPMDAYLFSLVDEDNKSIQPGNFERHWGLFYYDGRPKYQLTIGSRTNGLVGATGVAHLPKKWCILKPSANLNSDQVAPSVSYACQNADCTSLGYGTSCGGLDIRGNISYAFNSYYQVNDQVDGACKFPGLSTVTDRDPSTQGCTFQIMIQTDSARRIESLRIVLFAFLVVAFL*