Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0424870 | XP_003602244.1 | 95.045 | 222 | 2 | 1 | 1 | 222 | 1 | 213 | 2.55e-149 | 424 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0424870 | sp|O81223|CNBL4_ARATH | 70.667 | 225 | 54 | 2 | 1 | 222 | 1 | 216 | 1.03e-109 | 317 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0424870 | G7J6W3 | 95.045 | 222 | 2 | 1 | 1 | 222 | 1 | 213 | 1.22e-149 | 424 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0062190 | Msa0424870 | 0.807321 | 5.350993e-50 | -8.615850e-47 |
| Msa0198990 | Msa0424870 | 0.823043 | 1.712839e-53 | -8.615850e-47 |
| Msa0376430 | Msa0424870 | 0.848006 | 8.067966e-60 | -8.615850e-47 |
| Msa0424870 | Msa0516250 | 0.851553 | 8.234318e-61 | -8.615850e-47 |
| Msa0424870 | Msa0567330 | 0.801434 | 9.022881e-49 | -8.615850e-47 |
| Msa0424870 | Msa0610700 | -0.813523 | 2.452211e-51 | -8.615850e-47 |
| Msa0424870 | Msa0629160 | 0.802982 | 4.332680e-49 | -8.615850e-47 |
| Msa0424870 | Msa0766170 | 0.807012 | 6.220571e-50 | -8.615850e-47 |
| Msa0424870 | Msa0797580 | 0.834719 | 2.547494e-56 | -8.615850e-47 |
| Msa0424870 | Msa0800120 | 0.803320 | 3.687355e-49 | -8.615850e-47 |
| Msa0424870 | Msa0838210 | 0.803199 | 3.907288e-49 | -8.615850e-47 |
| Msa0424870 | Msa0931680 | 0.801657 | 8.117979e-49 | -8.615850e-47 |
| Msa0424870 | Msa1268360 | 0.804873 | 1.752628e-49 | -8.615850e-47 |
| Msa0424870 | Msa1284020 | 0.802458 | 5.556449e-49 | -8.615850e-47 |
| Msa0241750 | Msa0424870 | 0.842443 | 2.578176e-58 | -8.615850e-47 |
| Msa0319220 | Msa0424870 | 0.805763 | 1.140614e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0424870 | MtrunA17_Chr4g0055421 | 60.909 | 220 | 76 | 2 | 1 | 220 | 1 | 210 | 7.82e-94 | 273 |
| Msa0424870 | MtrunA17_Chr8g0388331 | 59.545 | 220 | 79 | 2 | 1 | 220 | 1 | 210 | 4.42e-92 | 269 |
| Msa0424870 | MtrunA17_Chr8g0346911 | 65.366 | 205 | 62 | 1 | 17 | 221 | 39 | 234 | 1.05e-91 | 269 |
| Msa0424870 | MtrunA17_Chr3g0102821 | 57.604 | 217 | 83 | 1 | 5 | 221 | 19 | 226 | 4.83e-90 | 264 |
| Msa0424870 | MtrunA17_Chr4g0076551 | 55.656 | 221 | 89 | 1 | 1 | 221 | 16 | 227 | 2.23e-89 | 263 |
| Msa0424870 | MtrunA17_Chr5g0446931 | 56.682 | 217 | 85 | 1 | 5 | 221 | 19 | 226 | 1.40e-88 | 260 |
| Msa0424870 | MtrunA17_Chr1g0151621 | 60.000 | 220 | 75 | 3 | 2 | 217 | 36 | 246 | 1.71e-85 | 253 |
| Msa0424870 | MtrunA17_Chr2g0290771 | 60.541 | 185 | 73 | 0 | 37 | 221 | 7 | 191 | 2.54e-82 | 243 |
| Msa0424870 | MtrunA17_Chr3g0126811 | 88.000 | 125 | 6 | 1 | 1 | 125 | 1 | 116 | 1.10e-73 | 219 |
| Msa0424870 | MtrunA17_Chr2g0290781 | 50.000 | 214 | 107 | 0 | 10 | 223 | 20 | 233 | 3.75e-72 | 219 |
| Msa0424870 | MtrunA17_Chr8g0341941 | 56.098 | 205 | 81 | 1 | 16 | 220 | 60 | 255 | 2.19e-71 | 218 |
| Msa0424870 | MtrunA17_Chr2g0290751 | 57.895 | 171 | 71 | 1 | 33 | 202 | 40 | 210 | 5.76e-70 | 213 |
| Msa0424870 | MtrunA17_Chr3g0126801 | 99.029 | 103 | 1 | 0 | 120 | 222 | 4 | 106 | 9.73e-70 | 209 |
| Msa0424870 | MtrunA17_Chr2g0290761 | 50.746 | 201 | 89 | 2 | 3 | 202 | 19 | 210 | 5.16e-69 | 210 |
| Msa0424870 | MtrunA17_Chr4g0063121 | 45.902 | 183 | 79 | 1 | 40 | 222 | 7 | 169 | 6.17e-50 | 162 |
| Msa0424870 | MtrunA17_Chr5g0399921 | 54.622 | 119 | 43 | 2 | 1 | 119 | 1 | 108 | 6.42e-36 | 123 |
| Msa0424870 | MtrunA17_Chr8g0388311 | 60.000 | 80 | 32 | 0 | 142 | 221 | 1 | 80 | 1.29e-30 | 108 |
| Msa0424870 | MtrunA17_Chr8g0388321 | 43.243 | 148 | 46 | 4 | 1 | 139 | 46 | 164 | 4.86e-30 | 109 |
| Msa0424870 | MtrunA17_Chr5g0399931 | 58.333 | 72 | 30 | 0 | 142 | 213 | 1 | 72 | 4.38e-20 | 80.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0424870 | AT5G24270.4 | 70.667 | 225 | 54 | 2 | 1 | 222 | 1 | 216 | 1.05e-110 | 317 |
| Msa0424870 | AT5G24270.1 | 70.667 | 225 | 54 | 2 | 1 | 222 | 1 | 216 | 1.05e-110 | 317 |
| Msa0424870 | AT5G24270.2 | 70.667 | 225 | 54 | 2 | 1 | 222 | 1 | 216 | 1.05e-110 | 317 |
| Msa0424870 | AT5G24270.5 | 77.419 | 186 | 42 | 0 | 37 | 222 | 6 | 191 | 1.59e-102 | 295 |
| Msa0424870 | AT5G47100.1 | 60.000 | 220 | 78 | 2 | 1 | 220 | 1 | 210 | 3.37e-91 | 267 |
| Msa0424870 | AT4G17615.4 | 59.545 | 220 | 79 | 2 | 1 | 220 | 1 | 210 | 1.03e-90 | 266 |
| Msa0424870 | AT4G17615.1 | 59.545 | 220 | 79 | 2 | 1 | 220 | 1 | 210 | 1.03e-90 | 266 |
| Msa0424870 | AT4G17615.5 | 59.545 | 220 | 79 | 2 | 1 | 220 | 1 | 210 | 1.03e-90 | 266 |
| Msa0424870 | AT1G64480.2 | 61.751 | 217 | 73 | 2 | 5 | 220 | 7 | 214 | 1.85e-89 | 263 |
| Msa0424870 | AT1G64480.3 | 61.751 | 217 | 73 | 2 | 5 | 220 | 7 | 214 | 1.85e-89 | 263 |
| Msa0424870 | AT1G64480.1 | 61.751 | 217 | 73 | 2 | 5 | 220 | 7 | 214 | 1.85e-89 | 263 |
| Msa0424870 | AT4G26570.1 | 59.048 | 210 | 77 | 1 | 12 | 221 | 26 | 226 | 1.38e-88 | 261 |
| Msa0424870 | AT4G33000.2 | 59.633 | 218 | 79 | 1 | 3 | 220 | 38 | 246 | 5.10e-88 | 260 |
| Msa0424870 | AT4G33000.1 | 59.633 | 218 | 79 | 1 | 3 | 220 | 48 | 256 | 9.63e-88 | 259 |
| Msa0424870 | AT4G26570.2 | 57.944 | 214 | 77 | 2 | 12 | 221 | 26 | 230 | 2.15e-86 | 255 |
| Msa0424870 | AT5G24270.3 | 74.233 | 163 | 42 | 0 | 60 | 222 | 7 | 169 | 3.65e-86 | 253 |
| Msa0424870 | AT5G55990.1 | 55.656 | 221 | 88 | 2 | 1 | 221 | 16 | 226 | 4.01e-86 | 254 |
| Msa0424870 | AT5G55990.2 | 55.656 | 221 | 88 | 2 | 1 | 221 | 16 | 226 | 4.01e-86 | 254 |
| Msa0424870 | AT4G17615.3 | 60.194 | 206 | 72 | 2 | 1 | 206 | 1 | 196 | 1.86e-83 | 249 |
| Msa0424870 | AT1G64480.4 | 61.500 | 200 | 67 | 2 | 5 | 203 | 7 | 197 | 1.78e-80 | 239 |
| Msa0424870 | AT4G16350.2 | 57.065 | 184 | 75 | 1 | 38 | 221 | 41 | 220 | 5.01e-73 | 221 |
| Msa0424870 | AT4G16350.1 | 57.065 | 184 | 75 | 1 | 38 | 221 | 41 | 220 | 5.01e-73 | 221 |
| Msa0424870 | AT4G17615.2 | 63.694 | 157 | 57 | 0 | 64 | 220 | 12 | 168 | 2.26e-71 | 215 |
| Msa0424870 | AT4G01420.1 | 48.357 | 213 | 99 | 2 | 1 | 213 | 1 | 202 | 1.39e-67 | 207 |
| Msa0424870 | AT5G47100.2 | 59.880 | 167 | 57 | 2 | 1 | 167 | 1 | 157 | 3.02e-65 | 199 |
| Msa0424870 | AT4G01420.2 | 48.276 | 203 | 94 | 2 | 1 | 203 | 1 | 192 | 1.07e-63 | 196 |
| Msa0424870 | AT4G26560.1 | 47.396 | 192 | 88 | 2 | 43 | 221 | 23 | 214 | 5.25e-61 | 190 |
| Msa0424870 | AT4G33000.4 | 56.098 | 164 | 63 | 1 | 3 | 166 | 38 | 192 | 4.45e-56 | 177 |
| Msa0424870 | AT4G33000.6 | 56.098 | 164 | 63 | 1 | 3 | 166 | 38 | 192 | 4.45e-56 | 177 |
| Msa0424870 | AT4G33000.5 | 56.442 | 163 | 62 | 1 | 3 | 165 | 38 | 191 | 1.03e-55 | 177 |
| Msa0424870 | AT4G33000.3 | 53.448 | 116 | 45 | 1 | 3 | 118 | 38 | 144 | 3.83e-32 | 114 |
Find 50 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATAGTCTTACTTATTGTTAT+TGG | 0.178074 | 3_2:+75184506 | None:intergenic |
| ACTCGGAGGGTTGACTAATT+AGG | 0.206588 | 3_2:-75184701 | Msa0424870:exon |
| CTCTGTTCTTGCAATAAAAC+TGG | 0.237866 | 3_2:+75184731 | None:intergenic |
| CGCAACGGCGTTATTGAGTT+TGG | 0.301486 | 3_2:-75185510 | Msa0424870:CDS |
| CTCGGAGGGTTGACTAATTA+GGG | 0.360544 | 3_2:-75184700 | Msa0424870:exon |
| GGTTACACTTACTTTAGATA+TGG | 0.371596 | 3_2:+75184862 | None:intergenic |
| AATTCCAGCTAGCACTCTTC+AGG | 0.371966 | 3_2:-75185782 | Msa0424870:CDS |
| TTGTATGATCTGAGGCAAAC+AGG | 0.377411 | 3_2:-75185268 | Msa0424870:CDS |
| GCAGTTAAAGGAAATGGTAT+TGG | 0.379876 | 3_2:-75185146 | Msa0424870:intron |
| GGTGAATTTGTTCGATCTCT+TGG | 0.384084 | 3_2:-75185489 | Msa0424870:CDS |
| GTCATGTTCTTTATCAAAGA+TGG | 0.400140 | 3_2:+75184889 | None:intergenic |
| AGCAATTCAATTATTGAAGA+TGG | 0.401125 | 3_2:-75185923 | Msa0424870:CDS |
| TTGTCTTCTAAAGCCGCATT+TGG | 0.412464 | 3_2:+75185456 | None:intergenic |
| TTATTTGCAGTTAAAGGAAA+TGG | 0.412783 | 3_2:-75185152 | Msa0424870:intron |
| ATGTATTTATGTATATATAT+AGG | 0.430814 | 3_2:-75184639 | Msa0424870:three_prime_UTR |
| GATAGAGGCTATTGTGGATA+AGG | 0.439938 | 3_2:-75185083 | Msa0424870:intron |
| TATCCATCTTCATCATTAAC+CGG | 0.453433 | 3_2:-75186088 | Msa0424870:intron |
| CATTCCTGAAGAGTGCTAGC+TGG | 0.479014 | 3_2:+75185778 | None:intergenic |
| TAAACTCTTAAGTTGAAAGA+TGG | 0.501693 | 3_2:+75184571 | None:intergenic |
| GATGCTGATACAAAAGATGA+TGG | 0.508848 | 3_2:-75184955 | Msa0424870:CDS |
| TGTTAAAACACCAGGCTATG+AGG | 0.509823 | 3_2:-75186146 | Msa0424870:CDS |
| GCTTTCAGATGACATGATAG+AGG | 0.529697 | 3_2:-75185098 | Msa0424870:CDS |
| ACACTTACTTTAGATATGGA+AGG | 0.535196 | 3_2:+75184866 | None:intergenic |
| AATAAAACTGGGAAATGCTA+AGG | 0.541646 | 3_2:+75184743 | None:intergenic |
| ACTAATTAGGGAGGAGCCAA+TGG | 0.544009 | 3_2:-75184688 | Msa0424870:three_prime_UTR |
| TTACCGGTTAATGATGAAGA+TGG | 0.551660 | 3_2:+75186085 | None:intergenic |
| TACTTATTGTTATTGGAACA+AGG | 0.556750 | 3_2:+75184513 | None:intergenic |
| GGACCATGTAATGTAAAACT+TGG | 0.558526 | 3_2:-75184594 | Msa0424870:three_prime_UTR |
| CTGATACAAAAGATGATGGA+AGG | 0.564303 | 3_2:-75184951 | Msa0424870:CDS |
| CACTTACTTTAGATATGGAA+GGG | 0.565574 | 3_2:+75184867 | None:intergenic |
| TGACATGATAGAGGCTATTG+TGG | 0.568591 | 3_2:-75185089 | Msa0424870:CDS |
| ACTGTGGGATCCTCATAGCC+TGG | 0.572736 | 3_2:+75186136 | None:intergenic |
| GATTAAACTGTAGTCACCAT+TGG | 0.576343 | 3_2:+75184672 | None:intergenic |
| AAGAACAGAGGTTGAAGACT+CGG | 0.584373 | 3_2:-75184718 | Msa0424870:CDS |
| TGAAGATGGTCTTATTCACA+AGG | 0.588994 | 3_2:-75185909 | Msa0424870:intron |
| GTTTCAGAAGCAAGAACTGT+GGG | 0.589683 | 3_2:+75186121 | None:intergenic |
| TTATTTGATGTTAAGCGCAA+CGG | 0.591522 | 3_2:-75185525 | Msa0424870:CDS |
| GAGACGTTATCAAAGAGAAG+TGG | 0.597112 | 3_2:-75184615 | Msa0424870:three_prime_UTR |
| GAAGGATTGATCAAGATGAG+TGG | 0.600746 | 3_2:-75184933 | Msa0424870:CDS |
| TCTGTTCTTGCAATAAAACT+GGG | 0.605918 | 3_2:+75184732 | None:intergenic |
| TGTATGATCTGAGGCAAACA+GGG | 0.613793 | 3_2:-75185267 | Msa0424870:CDS |
| AGTTACTGTGAGTGAAGTAG+AGG | 0.623440 | 3_2:-75185972 | Msa0424870:CDS |
| AAGACTATTTGTCTATTGTG+TGG | 0.631578 | 3_2:-75184491 | None:intergenic |
| AGGGTACATTGAAAGAGAAG+AGG | 0.631645 | 3_2:-75185248 | Msa0424870:intron |
| TCAAAGAATGTTAAAACACC+AGG | 0.638441 | 3_2:-75186154 | Msa0424870:CDS |
| AACAGAGGTTGAAGACTCGG+AGG | 0.660525 | 3_2:-75184715 | Msa0424870:CDS |
| ACAGAGGTTGAAGACTCGGA+GGG | 0.674518 | 3_2:-75184714 | Msa0424870:CDS |
| TGTTTCAGAAGCAAGAACTG+TGG | 0.689885 | 3_2:+75186120 | None:intergenic |
| GATGAAGATGGATACTCACA+AGG | 0.700807 | 3_2:+75186097 | None:intergenic |
| GGAGGGTTGACTAATTAGGG+AGG | 0.720516 | 3_2:-75184697 | Msa0424870:exon |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTCATAAATCTATTTATT+AGG | + | chr3_2:75184620-75184639 | None:intergenic | 10.0% |
| !! | ATGTATTTATGTATATATAT+AGG | - | chr3_2:75186030-75186049 | Msa0424870:intron | 10.0% |
| !! | ATTTCATAAATCTATTTATT+AGG | + | chr3_2:75184620-75184639 | None:intergenic | 10.0% |
| !! | ATGTATTTATGTATATATAT+AGG | - | chr3_2:75186030-75186049 | Msa0424870:intron | 10.0% |
| !!! | ATTTGTTTTAATCAACTTTA+AGG | + | chr3_2:75184652-75184671 | None:intergenic | 15.0% |
| !! | ACAAAAATATTATTACTTCT+AGG | - | chr3_2:75184861-75184880 | Msa0424870:intron | 15.0% |
| !! | AAGTTTAATATTAATATAGC+TGG | + | chr3_2:75185459-75185478 | None:intergenic | 15.0% |
| !!! | ATTTGTTTTAATCAACTTTA+AGG | + | chr3_2:75184652-75184671 | None:intergenic | 15.0% |
| !! | ACAAAAATATTATTACTTCT+AGG | - | chr3_2:75184861-75184880 | Msa0424870:intron | 15.0% |
| !! | AAGTTTAATATTAATATAGC+TGG | + | chr3_2:75185459-75185478 | None:intergenic | 15.0% |
| !! | TCATAAATCTATTTATTAGG+TGG | + | chr3_2:75184617-75184636 | None:intergenic | 20.0% |
| !!! | ATATTTTTGTAGAAGAGATT+AGG | + | chr3_2:75184851-75184870 | None:intergenic | 20.0% |
| !! | AATAAGTCAAAAATCTATAG+AGG | + | chr3_2:75185129-75185148 | None:intergenic | 20.0% |
| !! | TTATAACTCTTGCTTAATAT+AGG | + | chr3_2:75185326-75185345 | None:intergenic | 20.0% |
| !!! | TTCTGGTTATTTATTGAATT+GGG | - | chr3_2:75185350-75185369 | Msa0424870:intron | 20.0% |
| !! | TTTAAATGTAACAATCGTAA+TGG | + | chr3_2:75185631-75185650 | None:intergenic | 20.0% |
| !!! | AAAAATGGATTTTCATTAAG+AGG | + | chr3_2:75185831-75185850 | None:intergenic | 20.0% |
| !!! | AATCCATTTTTTTTATTGAC+TGG | - | chr3_2:75185840-75185859 | Msa0424870:intron | 20.0% |
| !! | ATTCCAGTCAATAAAAAAAA+TGG | + | chr3_2:75185846-75185865 | None:intergenic | 20.0% |
| !!! | ATAGTCTTACTTATTGTTAT+TGG | + | chr3_2:75186166-75186185 | None:intergenic | 20.0% |
| !! | TCATAAATCTATTTATTAGG+TGG | + | chr3_2:75184617-75184636 | None:intergenic | 20.0% |
| !!! | ATATTTTTGTAGAAGAGATT+AGG | + | chr3_2:75184851-75184870 | None:intergenic | 20.0% |
| !! | AATAAGTCAAAAATCTATAG+AGG | + | chr3_2:75185129-75185148 | None:intergenic | 20.0% |
| !! | TTATAACTCTTGCTTAATAT+AGG | + | chr3_2:75185326-75185345 | None:intergenic | 20.0% |
| !!! | TTCTGGTTATTTATTGAATT+GGG | - | chr3_2:75185350-75185369 | Msa0424870:intron | 20.0% |
| !! | TTTAAATGTAACAATCGTAA+TGG | + | chr3_2:75185631-75185650 | None:intergenic | 20.0% |
| !!! | AAAAATGGATTTTCATTAAG+AGG | + | chr3_2:75185831-75185850 | None:intergenic | 20.0% |
| !!! | AATCCATTTTTTTTATTGAC+TGG | - | chr3_2:75185840-75185859 | Msa0424870:intron | 20.0% |
| !! | ATTCCAGTCAATAAAAAAAA+TGG | + | chr3_2:75185846-75185865 | None:intergenic | 20.0% |
| !!! | ATAGTCTTACTTATTGTTAT+TGG | + | chr3_2:75186166-75186185 | None:intergenic | 20.0% |
| ! | AGCAATTCAATTATTGAAGA+TGG | - | chr3_2:75184746-75184765 | Msa0424870:CDS | 25.0% |
| ! | AGATAAAATGTCCTTAATTC+AGG | - | chr3_2:75184823-75184842 | Msa0424870:intron | 25.0% |
| ! | TATAACTCATCCATACTTTA+TGG | - | chr3_2:75184948-75184967 | Msa0424870:CDS | 25.0% |
| !! | GTTCTGGTTATTTATTGAAT+TGG | - | chr3_2:75185349-75185368 | Msa0424870:intron | 25.0% |
| ! | TATGTTAGAACTTAGAATCA+TGG | - | chr3_2:75185493-75185512 | Msa0424870:CDS | 25.0% |
| ! | TTATTTGCAGTTAAAGGAAA+TGG | - | chr3_2:75185517-75185536 | Msa0424870:CDS | 25.0% |
| !!! | TAAACTCTTAAGTTGAAAGA+TGG | + | chr3_2:75186101-75186120 | None:intergenic | 25.0% |
| !! | TACTTATTGTTATTGGAACA+AGG | + | chr3_2:75186159-75186178 | None:intergenic | 25.0% |
| ! | AGCAATTCAATTATTGAAGA+TGG | - | chr3_2:75184746-75184765 | Msa0424870:CDS | 25.0% |
| ! | AGATAAAATGTCCTTAATTC+AGG | - | chr3_2:75184823-75184842 | Msa0424870:intron | 25.0% |
| ! | TATAACTCATCCATACTTTA+TGG | - | chr3_2:75184948-75184967 | Msa0424870:CDS | 25.0% |
| !! | GTTCTGGTTATTTATTGAAT+TGG | - | chr3_2:75185349-75185368 | Msa0424870:intron | 25.0% |
| ! | TATGTTAGAACTTAGAATCA+TGG | - | chr3_2:75185493-75185512 | Msa0424870:CDS | 25.0% |
| ! | TTATTTGCAGTTAAAGGAAA+TGG | - | chr3_2:75185517-75185536 | Msa0424870:CDS | 25.0% |
| !!! | TAAACTCTTAAGTTGAAAGA+TGG | + | chr3_2:75186101-75186120 | None:intergenic | 25.0% |
| !! | TACTTATTGTTATTGGAACA+AGG | + | chr3_2:75186159-75186178 | None:intergenic | 25.0% |
| TCAAAGAATGTTAAAACACC+AGG | - | chr3_2:75184515-75184534 | Msa0424870:three_prime_UTR | 30.0% | |
| TATCCATCTTCATCATTAAC+CGG | - | chr3_2:75184581-75184600 | Msa0424870:three_prime_UTR | 30.0% | |
| CAAGTTTAGACCATAAAGTA+TGG | + | chr3_2:75184961-75184980 | None:intergenic | 30.0% | |
| ! | AAGCTCTATGATCTTTTGAT+AGG | - | chr3_2:75184997-75185016 | Msa0424870:intron | 30.0% |
| GCATTAGAATGAAATAATGC+AGG | + | chr3_2:75185088-75185107 | None:intergenic | 30.0% | |
| TTATTTGATGTTAAGCGCAA+CGG | - | chr3_2:75185144-75185163 | Msa0424870:CDS | 30.0% | |
| ATAGGAAACTCCAAAACTTA+GGG | + | chr3_2:75185308-75185327 | None:intergenic | 30.0% | |
| TATAGGAAACTCCAAAACTT+AGG | + | chr3_2:75185309-75185328 | None:intergenic | 30.0% | |
| GCAAGAGTTATAATATGTTC+TGG | - | chr3_2:75185333-75185352 | Msa0424870:intron | 30.0% | |
| !!! | TGATATTTGCAGTTGCTTTT+AGG | - | chr3_2:75185378-75185397 | Msa0424870:intron | 30.0% |
| CATGGTTTATTTGCAGTTAA+AGG | - | chr3_2:75185511-75185530 | Msa0424870:CDS | 30.0% | |
| GTCATGTTCTTTATCAAAGA+TGG | + | chr3_2:75185783-75185802 | None:intergenic | 30.0% | |
| CACTTACTTTAGATATGGAA+GGG | + | chr3_2:75185805-75185824 | None:intergenic | 30.0% | |
| ACACTTACTTTAGATATGGA+AGG | + | chr3_2:75185806-75185825 | None:intergenic | 30.0% | |
| GGTTACACTTACTTTAGATA+TGG | + | chr3_2:75185810-75185829 | None:intergenic | 30.0% | |
| AATAAAACTGGGAAATGCTA+AGG | + | chr3_2:75185929-75185948 | None:intergenic | 30.0% | |
| TCTGTTCTTGCAATAAAACT+GGG | + | chr3_2:75185940-75185959 | None:intergenic | 30.0% | |
| TCAAAGAATGTTAAAACACC+AGG | - | chr3_2:75184515-75184534 | Msa0424870:three_prime_UTR | 30.0% | |
| TATCCATCTTCATCATTAAC+CGG | - | chr3_2:75184581-75184600 | Msa0424870:three_prime_UTR | 30.0% | |
| CAAGTTTAGACCATAAAGTA+TGG | + | chr3_2:75184961-75184980 | None:intergenic | 30.0% | |
| ! | AAGCTCTATGATCTTTTGAT+AGG | - | chr3_2:75184997-75185016 | Msa0424870:intron | 30.0% |
| GCATTAGAATGAAATAATGC+AGG | + | chr3_2:75185088-75185107 | None:intergenic | 30.0% | |
| TTATTTGATGTTAAGCGCAA+CGG | - | chr3_2:75185144-75185163 | Msa0424870:CDS | 30.0% | |
| ATAGGAAACTCCAAAACTTA+GGG | + | chr3_2:75185308-75185327 | None:intergenic | 30.0% | |
| TATAGGAAACTCCAAAACTT+AGG | + | chr3_2:75185309-75185328 | None:intergenic | 30.0% | |
| GCAAGAGTTATAATATGTTC+TGG | - | chr3_2:75185333-75185352 | Msa0424870:intron | 30.0% | |
| !!! | TGATATTTGCAGTTGCTTTT+AGG | - | chr3_2:75185378-75185397 | Msa0424870:intron | 30.0% |
| CATGGTTTATTTGCAGTTAA+AGG | - | chr3_2:75185511-75185530 | Msa0424870:CDS | 30.0% | |
| GTCATGTTCTTTATCAAAGA+TGG | + | chr3_2:75185783-75185802 | None:intergenic | 30.0% | |
| CACTTACTTTAGATATGGAA+GGG | + | chr3_2:75185805-75185824 | None:intergenic | 30.0% | |
| ACACTTACTTTAGATATGGA+AGG | + | chr3_2:75185806-75185825 | None:intergenic | 30.0% | |
| GGTTACACTTACTTTAGATA+TGG | + | chr3_2:75185810-75185829 | None:intergenic | 30.0% | |
| AATAAAACTGGGAAATGCTA+AGG | + | chr3_2:75185929-75185948 | None:intergenic | 30.0% | |
| TCTGTTCTTGCAATAAAACT+GGG | + | chr3_2:75185940-75185959 | None:intergenic | 30.0% | |
| ! | TTACCGGTTAATGATGAAGA+TGG | + | chr3_2:75184587-75184606 | None:intergenic | 35.0% |
| ATTAGGTGGAACAGAATTAC+CGG | + | chr3_2:75184603-75184622 | None:intergenic | 35.0% | |
| !! | TGAAGATGGTCTTATTCACA+AGG | - | chr3_2:75184760-75184779 | Msa0424870:intron | 35.0% |
| AGAAAAATCTGTTTGCAGAC+AGG | - | chr3_2:75184920-75184939 | Msa0424870:CDS | 35.0% | |
| GAAAAATCTGTTTGCAGACA+GGG | - | chr3_2:75184921-75184940 | Msa0424870:CDS | 35.0% | |
| GAGGAGAAACAATTGTGAAA+AGG | + | chr3_2:75185110-75185129 | None:intergenic | 35.0% | |
| ! | TGGTGTTTTTCATCCAAATG+CGG | - | chr3_2:75185200-75185219 | Msa0424870:intron | 35.0% |
| ! | TTTGTCCTTTCCCTAAGTTT+TGG | - | chr3_2:75185295-75185314 | Msa0424870:intron | 35.0% |
| AAACTCCAAAACTTAGGGAA+AGG | + | chr3_2:75185303-75185322 | None:intergenic | 35.0% | |
| !!! | CTTTTAGGTTGTATGATCTG+AGG | - | chr3_2:75185393-75185412 | Msa0424870:intron | 35.0% |
| GCAGTTAAAGGAAATGGTAT+TGG | - | chr3_2:75185523-75185542 | Msa0424870:CDS | 35.0% | |
| ATGTAACAATCGTAATGGCA+AGG | + | chr3_2:75185626-75185645 | None:intergenic | 35.0% | |
| GATGCTGATACAAAAGATGA+TGG | - | chr3_2:75185714-75185733 | Msa0424870:intron | 35.0% | |
| !! | CTGATACAAAAGATGATGGA+AGG | - | chr3_2:75185718-75185737 | Msa0424870:intron | 35.0% |
| AATATCCCTACAAAATGTGG+AGG | + | chr3_2:75185905-75185924 | None:intergenic | 35.0% | |
| GGTAATATCCCTACAAAATG+TGG | + | chr3_2:75185908-75185927 | None:intergenic | 35.0% | |
| CTCTGTTCTTGCAATAAAAC+TGG | + | chr3_2:75185941-75185960 | None:intergenic | 35.0% | |
| !!! | CAGTTTTATTGCAAGAACAG+AGG | - | chr3_2:75185939-75185958 | Msa0424870:CDS | 35.0% |
| GATTAAACTGTAGTCACCAT+TGG | + | chr3_2:75186000-75186019 | None:intergenic | 35.0% | |
| GGACCATGTAATGTAAAACT+TGG | - | chr3_2:75186075-75186094 | Msa0424870:intron | 35.0% | |
| ! | TGGCCAAGTTTTACATTACA+TGG | + | chr3_2:75186081-75186100 | None:intergenic | 35.0% |
| ! | TTACCGGTTAATGATGAAGA+TGG | + | chr3_2:75184587-75184606 | None:intergenic | 35.0% |
| ATTAGGTGGAACAGAATTAC+CGG | + | chr3_2:75184603-75184622 | None:intergenic | 35.0% | |
| !! | TGAAGATGGTCTTATTCACA+AGG | - | chr3_2:75184760-75184779 | Msa0424870:intron | 35.0% |
| AGAAAAATCTGTTTGCAGAC+AGG | - | chr3_2:75184920-75184939 | Msa0424870:CDS | 35.0% | |
| GAAAAATCTGTTTGCAGACA+GGG | - | chr3_2:75184921-75184940 | Msa0424870:CDS | 35.0% | |
| GAGGAGAAACAATTGTGAAA+AGG | + | chr3_2:75185110-75185129 | None:intergenic | 35.0% | |
| ! | TGGTGTTTTTCATCCAAATG+CGG | - | chr3_2:75185200-75185219 | Msa0424870:intron | 35.0% |
| ! | TTTGTCCTTTCCCTAAGTTT+TGG | - | chr3_2:75185295-75185314 | Msa0424870:intron | 35.0% |
| AAACTCCAAAACTTAGGGAA+AGG | + | chr3_2:75185303-75185322 | None:intergenic | 35.0% | |
| !!! | CTTTTAGGTTGTATGATCTG+AGG | - | chr3_2:75185393-75185412 | Msa0424870:intron | 35.0% |
| GCAGTTAAAGGAAATGGTAT+TGG | - | chr3_2:75185523-75185542 | Msa0424870:CDS | 35.0% | |
| ATGTAACAATCGTAATGGCA+AGG | + | chr3_2:75185626-75185645 | None:intergenic | 35.0% | |
| GATGCTGATACAAAAGATGA+TGG | - | chr3_2:75185714-75185733 | Msa0424870:intron | 35.0% | |
| !! | CTGATACAAAAGATGATGGA+AGG | - | chr3_2:75185718-75185737 | Msa0424870:intron | 35.0% |
| AATATCCCTACAAAATGTGG+AGG | + | chr3_2:75185905-75185924 | None:intergenic | 35.0% | |
| GGTAATATCCCTACAAAATG+TGG | + | chr3_2:75185908-75185927 | None:intergenic | 35.0% | |
| CTCTGTTCTTGCAATAAAAC+TGG | + | chr3_2:75185941-75185960 | None:intergenic | 35.0% | |
| !!! | CAGTTTTATTGCAAGAACAG+AGG | - | chr3_2:75185939-75185958 | Msa0424870:CDS | 35.0% |
| GATTAAACTGTAGTCACCAT+TGG | + | chr3_2:75186000-75186019 | None:intergenic | 35.0% | |
| GGACCATGTAATGTAAAACT+TGG | - | chr3_2:75186075-75186094 | Msa0424870:intron | 35.0% | |
| ! | TGGCCAAGTTTTACATTACA+TGG | + | chr3_2:75186081-75186100 | None:intergenic | 35.0% |
| TGTTAAAACACCAGGCTATG+AGG | - | chr3_2:75184523-75184542 | Msa0424870:three_prime_UTR | 40.0% | |
| GTTTCAGAAGCAAGAACTGT+GGG | + | chr3_2:75184551-75184570 | None:intergenic | 40.0% | |
| TGTTTCAGAAGCAAGAACTG+TGG | + | chr3_2:75184552-75184571 | None:intergenic | 40.0% | |
| GATGAAGATGGATACTCACA+AGG | + | chr3_2:75184575-75184594 | None:intergenic | 40.0% | |
| AGTTACTGTGAGTGAAGTAG+AGG | - | chr3_2:75184697-75184716 | Msa0424870:exon | 40.0% | |
| GAGATTAGGCACCTGAATTA+AGG | + | chr3_2:75184837-75184856 | None:intergenic | 40.0% | |
| ! | GGTGAATTTGTTCGATCTCT+TGG | - | chr3_2:75185180-75185199 | Msa0424870:intron | 40.0% |
| !! | TTGTCTTCTAAAGCCGCATT+TGG | + | chr3_2:75185216-75185235 | None:intergenic | 40.0% |
| ! | TTGTATGATCTGAGGCAAAC+AGG | - | chr3_2:75185401-75185420 | Msa0424870:intron | 40.0% |
| ! | TGTATGATCTGAGGCAAACA+GGG | - | chr3_2:75185402-75185421 | Msa0424870:intron | 40.0% |
| AGGGTACATTGAAAGAGAAG+AGG | - | chr3_2:75185421-75185440 | Msa0424870:intron | 40.0% | |
| GCTTTCAGATGACATGATAG+AGG | - | chr3_2:75185571-75185590 | Msa0424870:intron | 40.0% | |
| TGACATGATAGAGGCTATTG+TGG | - | chr3_2:75185580-75185599 | Msa0424870:intron | 40.0% | |
| GATAGAGGCTATTGTGGATA+AGG | - | chr3_2:75185586-75185605 | Msa0424870:intron | 40.0% | |
| GAAGGATTGATCAAGATGAG+TGG | - | chr3_2:75185736-75185755 | Msa0424870:intron | 40.0% | |
| AAGAACAGAGGTTGAAGACT+CGG | - | chr3_2:75185951-75185970 | Msa0424870:CDS | 40.0% | |
| GAGACGTTATCAAAGAGAAG+TGG | - | chr3_2:75186054-75186073 | Msa0424870:intron | 40.0% | |
| TGTTAAAACACCAGGCTATG+AGG | - | chr3_2:75184523-75184542 | Msa0424870:three_prime_UTR | 40.0% | |
| GTTTCAGAAGCAAGAACTGT+GGG | + | chr3_2:75184551-75184570 | None:intergenic | 40.0% | |
| TGTTTCAGAAGCAAGAACTG+TGG | + | chr3_2:75184552-75184571 | None:intergenic | 40.0% | |
| GATGAAGATGGATACTCACA+AGG | + | chr3_2:75184575-75184594 | None:intergenic | 40.0% | |
| AGTTACTGTGAGTGAAGTAG+AGG | - | chr3_2:75184697-75184716 | Msa0424870:exon | 40.0% | |
| GAGATTAGGCACCTGAATTA+AGG | + | chr3_2:75184837-75184856 | None:intergenic | 40.0% | |
| ! | GGTGAATTTGTTCGATCTCT+TGG | - | chr3_2:75185180-75185199 | Msa0424870:intron | 40.0% |
| !! | TTGTCTTCTAAAGCCGCATT+TGG | + | chr3_2:75185216-75185235 | None:intergenic | 40.0% |
| ! | TTGTATGATCTGAGGCAAAC+AGG | - | chr3_2:75185401-75185420 | Msa0424870:intron | 40.0% |
| ! | TGTATGATCTGAGGCAAACA+GGG | - | chr3_2:75185402-75185421 | Msa0424870:intron | 40.0% |
| AGGGTACATTGAAAGAGAAG+AGG | - | chr3_2:75185421-75185440 | Msa0424870:intron | 40.0% | |
| GCTTTCAGATGACATGATAG+AGG | - | chr3_2:75185571-75185590 | Msa0424870:intron | 40.0% | |
| TGACATGATAGAGGCTATTG+TGG | - | chr3_2:75185580-75185599 | Msa0424870:intron | 40.0% | |
| GATAGAGGCTATTGTGGATA+AGG | - | chr3_2:75185586-75185605 | Msa0424870:intron | 40.0% | |
| GAAGGATTGATCAAGATGAG+TGG | - | chr3_2:75185736-75185755 | Msa0424870:intron | 40.0% | |
| AAGAACAGAGGTTGAAGACT+CGG | - | chr3_2:75185951-75185970 | Msa0424870:CDS | 40.0% | |
| GAGACGTTATCAAAGAGAAG+TGG | - | chr3_2:75186054-75186073 | Msa0424870:intron | 40.0% | |
| AATTCCAGCTAGCACTCTTC+AGG | - | chr3_2:75184887-75184906 | Msa0424870:CDS | 45.0% | |
| ! | ATGCCTCCTCCACATTTTGT+AGG | - | chr3_2:75185896-75185915 | Msa0424870:intron | 45.0% |
| ! | TGCCTCCTCCACATTTTGTA+GGG | - | chr3_2:75185897-75185916 | Msa0424870:intron | 45.0% |
| ATCCCTACAAAATGTGGAGG+AGG | + | chr3_2:75185902-75185921 | None:intergenic | 45.0% | |
| ACTCGGAGGGTTGACTAATT+AGG | - | chr3_2:75185968-75185987 | Msa0424870:CDS | 45.0% | |
| CTCGGAGGGTTGACTAATTA+GGG | - | chr3_2:75185969-75185988 | Msa0424870:CDS | 45.0% | |
| ACTAATTAGGGAGGAGCCAA+TGG | - | chr3_2:75185981-75186000 | Msa0424870:intron | 45.0% | |
| AATTCCAGCTAGCACTCTTC+AGG | - | chr3_2:75184887-75184906 | Msa0424870:CDS | 45.0% | |
| ! | ATGCCTCCTCCACATTTTGT+AGG | - | chr3_2:75185896-75185915 | Msa0424870:intron | 45.0% |
| ! | TGCCTCCTCCACATTTTGTA+GGG | - | chr3_2:75185897-75185916 | Msa0424870:intron | 45.0% |
| ATCCCTACAAAATGTGGAGG+AGG | + | chr3_2:75185902-75185921 | None:intergenic | 45.0% | |
| ACTCGGAGGGTTGACTAATT+AGG | - | chr3_2:75185968-75185987 | Msa0424870:CDS | 45.0% | |
| CTCGGAGGGTTGACTAATTA+GGG | - | chr3_2:75185969-75185988 | Msa0424870:CDS | 45.0% | |
| ACTAATTAGGGAGGAGCCAA+TGG | - | chr3_2:75185981-75186000 | Msa0424870:intron | 45.0% | |
| !! | CATTCCTGAAGAGTGCTAGC+TGG | + | chr3_2:75184894-75184913 | None:intergenic | 50.0% |
| CGCAACGGCGTTATTGAGTT+TGG | - | chr3_2:75185159-75185178 | Msa0424870:intron | 50.0% | |
| AACAGAGGTTGAAGACTCGG+AGG | - | chr3_2:75185954-75185973 | Msa0424870:CDS | 50.0% | |
| ACAGAGGTTGAAGACTCGGA+GGG | - | chr3_2:75185955-75185974 | Msa0424870:CDS | 50.0% | |
| GGAGGGTTGACTAATTAGGG+AGG | - | chr3_2:75185972-75185991 | Msa0424870:CDS | 50.0% | |
| !! | CATTCCTGAAGAGTGCTAGC+TGG | + | chr3_2:75184894-75184913 | None:intergenic | 50.0% |
| CGCAACGGCGTTATTGAGTT+TGG | - | chr3_2:75185159-75185178 | Msa0424870:intron | 50.0% | |
| AACAGAGGTTGAAGACTCGG+AGG | - | chr3_2:75185954-75185973 | Msa0424870:CDS | 50.0% | |
| ACAGAGGTTGAAGACTCGGA+GGG | - | chr3_2:75185955-75185974 | Msa0424870:CDS | 50.0% | |
| GGAGGGTTGACTAATTAGGG+AGG | - | chr3_2:75185972-75185991 | Msa0424870:CDS | 50.0% | |
| ACTGTGGGATCCTCATAGCC+TGG | + | chr3_2:75184536-75184555 | None:intergenic | 55.0% | |
| ACTGTGGGATCCTCATAGCC+TGG | + | chr3_2:75184536-75184555 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 75184494 | 75186197 | 75184494 | ID=Msa0424870;Name=Msa0424870 |
| chr3_2 | mRNA | 75184494 | 75186197 | 75184494 | ID=Msa0424870-mRNA-1;Parent=Msa0424870;Name=Msa0424870-mRNA-1;_AED=0.27;_eAED=0.29;_QI=0|0.85|0.87|1|1|1|8|216|223 |
| chr3_2 | exon | 75184494 | 75184773 | 75184494 | ID=Msa0424870-mRNA-1:exon:19202;Parent=Msa0424870-mRNA-1 |
| chr3_2 | exon | 75184874 | 75184986 | 75184874 | ID=Msa0424870-mRNA-1:exon:19201;Parent=Msa0424870-mRNA-1 |
| chr3_2 | exon | 75185084 | 75185164 | 75185084 | ID=Msa0424870-mRNA-1:exon:19200;Parent=Msa0424870-mRNA-1 |
| chr3_2 | exon | 75185249 | 75185301 | 75185249 | ID=Msa0424870-mRNA-1:exon:19199;Parent=Msa0424870-mRNA-1 |
| chr3_2 | exon | 75185448 | 75185556 | 75185448 | ID=Msa0424870-mRNA-1:exon:19198;Parent=Msa0424870-mRNA-1 |
| chr3_2 | exon | 75185749 | 75185808 | 75185749 | ID=Msa0424870-mRNA-1:exon:19197;Parent=Msa0424870-mRNA-1 |
| chr3_2 | exon | 75185910 | 75185992 | 75185910 | ID=Msa0424870-mRNA-1:exon:19196;Parent=Msa0424870-mRNA-1 |
| chr3_2 | exon | 75186089 | 75186197 | 75186089 | ID=Msa0424870-mRNA-1:exon:19195;Parent=Msa0424870-mRNA-1 |
| chr3_2 | CDS | 75186089 | 75186197 | 75186089 | ID=Msa0424870-mRNA-1:cds;Parent=Msa0424870-mRNA-1 |
| chr3_2 | CDS | 75185910 | 75185992 | 75185910 | ID=Msa0424870-mRNA-1:cds;Parent=Msa0424870-mRNA-1 |
| chr3_2 | CDS | 75185749 | 75185808 | 75185749 | ID=Msa0424870-mRNA-1:cds;Parent=Msa0424870-mRNA-1 |
| chr3_2 | CDS | 75185448 | 75185556 | 75185448 | ID=Msa0424870-mRNA-1:cds;Parent=Msa0424870-mRNA-1 |
| chr3_2 | CDS | 75185249 | 75185301 | 75185249 | ID=Msa0424870-mRNA-1:cds;Parent=Msa0424870-mRNA-1 |
| chr3_2 | CDS | 75185084 | 75185164 | 75185084 | ID=Msa0424870-mRNA-1:cds;Parent=Msa0424870-mRNA-1 |
| chr3_2 | CDS | 75184874 | 75184986 | 75184874 | ID=Msa0424870-mRNA-1:cds;Parent=Msa0424870-mRNA-1 |
| chr3_2 | CDS | 75184710 | 75184773 | 75184710 | ID=Msa0424870-mRNA-1:cds;Parent=Msa0424870-mRNA-1 |
| chr3_2 | three_prime_UTR | 75184494 | 75184709 | 75184494 | ID=Msa0424870-mRNA-1:three_prime_utr;Parent=Msa0424870-mRNA-1 |
| Gene Sequence |
| Protein sequence |
