Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0376430 | XP_003602244.1 | 94.619 | 223 | 2 | 2 | 1 | 223 | 1 | 213 | 2.41e-147 | 419 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0376430 | sp|O81223|CNBL4_ARATH | 71.556 | 225 | 53 | 2 | 1 | 223 | 1 | 216 | 4.00e-111 | 320 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0376430 | G7J6W3 | 94.619 | 223 | 2 | 2 | 1 | 223 | 1 | 213 | 1.15e-147 | 419 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0032710 | Msa0376430 | 0.823614 | 1.259628e-53 | -8.615850e-47 |
Msa0198990 | Msa0376430 | 0.813410 | 2.595749e-51 | -8.615850e-47 |
Msa0376430 | Msa0424870 | 0.848006 | 8.067966e-60 | -8.615850e-47 |
Msa0376430 | Msa0516250 | 0.991018 | 1.779708e-185 | -8.615850e-47 |
Msa0376430 | Msa0581350 | 0.805271 | 1.446752e-49 | -8.615850e-47 |
Msa0376430 | Msa0610690 | 0.809066 | 2.273917e-50 | -8.615850e-47 |
Msa0376430 | Msa0657710 | 0.807508 | 4.883817e-50 | -8.615850e-47 |
Msa0376430 | Msa0657720 | 0.818209 | 2.208809e-52 | -8.615850e-47 |
Msa0376430 | Msa0702790 | 0.816007 | 6.904839e-52 | -8.615850e-47 |
Msa0376430 | Msa0702800 | 0.808165 | 3.540554e-50 | -8.615850e-47 |
Msa0376430 | Msa0797580 | 0.802678 | 5.005157e-49 | -8.615850e-47 |
Msa0376430 | Msa0800150 | 0.802052 | 6.734909e-49 | -8.615850e-47 |
Msa0376430 | Msa0800180 | 0.820501 | 6.633556e-53 | -8.615850e-47 |
Msa0376430 | Msa0828950 | 0.814492 | 1.498856e-51 | -8.615850e-47 |
Msa0376430 | Msa0828960 | 0.809957 | 1.463738e-50 | -8.615850e-47 |
Msa0376430 | Msa0940910 | 0.837977 | 3.779680e-57 | -8.615850e-47 |
Msa0376430 | Msa1081170 | 0.802886 | 4.533792e-49 | -8.615850e-47 |
Msa0376430 | Msa1082410 | 0.808757 | 2.647545e-50 | -8.615850e-47 |
Msa0376430 | Msa1268390 | 0.823900 | 1.079687e-53 | -8.615850e-47 |
Msa0376430 | Msa1268420 | 0.825085 | 5.682040e-54 | -8.615850e-47 |
Msa0376430 | Msa1323070 | 0.841282 | 5.223906e-58 | -8.615850e-47 |
Msa0376430 | Msa1407840 | 0.801734 | 7.831342e-49 | -8.615850e-47 |
Msa0376430 | Msa1428230 | -0.800080 | 1.704563e-48 | -8.615850e-47 |
Msa0376430 | Msa1439250 | 0.846478 | 2.117609e-59 | -8.615850e-47 |
Msa0376430 | Msa1439270 | 0.804269 | 2.343069e-49 | -8.615850e-47 |
Msa0241750 | Msa0376430 | 0.804007 | 2.656229e-49 | -8.615850e-47 |
Msa0288620 | Msa0376430 | 0.803231 | 3.847318e-49 | -8.615850e-47 |
Msa0313900 | Msa0376430 | 0.807416 | 5.108524e-50 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0376430 | MtrunA17_Chr4g0055421 | 61.086 | 221 | 75 | 2 | 1 | 221 | 1 | 210 | 2.03e-94 | 275 |
Msa0376430 | MtrunA17_Chr8g0388331 | 59.276 | 221 | 79 | 2 | 1 | 221 | 1 | 210 | 6.51e-92 | 268 |
Msa0376430 | MtrunA17_Chr8g0346911 | 65.366 | 205 | 62 | 1 | 18 | 222 | 39 | 234 | 1.28e-91 | 268 |
Msa0376430 | MtrunA17_Chr4g0076551 | 55.856 | 222 | 88 | 2 | 1 | 222 | 16 | 227 | 3.36e-89 | 262 |
Msa0376430 | MtrunA17_Chr3g0102821 | 59.420 | 207 | 75 | 1 | 16 | 222 | 29 | 226 | 2.13e-88 | 260 |
Msa0376430 | MtrunA17_Chr5g0446931 | 56.422 | 218 | 86 | 1 | 5 | 222 | 18 | 226 | 6.02e-88 | 259 |
Msa0376430 | MtrunA17_Chr1g0151621 | 59.545 | 220 | 77 | 2 | 2 | 218 | 36 | 246 | 1.68e-85 | 253 |
Msa0376430 | MtrunA17_Chr2g0290771 | 60.541 | 185 | 73 | 0 | 38 | 222 | 7 | 191 | 3.31e-82 | 243 |
Msa0376430 | MtrunA17_Chr2g0290781 | 48.889 | 225 | 102 | 3 | 4 | 224 | 18 | 233 | 3.34e-72 | 219 |
Msa0376430 | MtrunA17_Chr3g0126811 | 87.302 | 126 | 6 | 2 | 1 | 126 | 1 | 116 | 9.05e-72 | 214 |
Msa0376430 | MtrunA17_Chr8g0341941 | 56.098 | 205 | 81 | 1 | 17 | 221 | 60 | 255 | 2.40e-71 | 218 |
Msa0376430 | MtrunA17_Chr2g0290751 | 51.980 | 202 | 86 | 2 | 3 | 203 | 19 | 210 | 4.92e-71 | 215 |
Msa0376430 | MtrunA17_Chr2g0290761 | 50.746 | 201 | 90 | 1 | 3 | 203 | 19 | 210 | 1.40e-70 | 214 |
Msa0376430 | MtrunA17_Chr3g0126801 | 99.029 | 103 | 1 | 0 | 121 | 223 | 4 | 106 | 1.15e-69 | 209 |
Msa0376430 | MtrunA17_Chr4g0063121 | 45.902 | 183 | 79 | 1 | 41 | 223 | 7 | 169 | 7.34e-50 | 162 |
Msa0376430 | MtrunA17_Chr5g0399921 | 54.167 | 120 | 43 | 2 | 1 | 120 | 1 | 108 | 8.86e-36 | 122 |
Msa0376430 | MtrunA17_Chr8g0388311 | 60.000 | 80 | 32 | 0 | 143 | 222 | 1 | 80 | 1.36e-30 | 108 |
Msa0376430 | MtrunA17_Chr8g0388321 | 42.308 | 156 | 51 | 4 | 1 | 147 | 46 | 171 | 5.75e-30 | 109 |
Msa0376430 | MtrunA17_Chr5g0399931 | 58.333 | 72 | 30 | 0 | 143 | 214 | 1 | 72 | 4.67e-20 | 80.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0376430 | AT5G24270.4 | 71.556 | 225 | 53 | 2 | 1 | 223 | 1 | 216 | 4.07e-112 | 320 |
Msa0376430 | AT5G24270.1 | 71.556 | 225 | 53 | 2 | 1 | 223 | 1 | 216 | 4.07e-112 | 320 |
Msa0376430 | AT5G24270.2 | 71.556 | 225 | 53 | 2 | 1 | 223 | 1 | 216 | 4.07e-112 | 320 |
Msa0376430 | AT5G24270.5 | 77.419 | 186 | 42 | 0 | 38 | 223 | 6 | 191 | 1.46e-102 | 295 |
Msa0376430 | AT4G17615.4 | 60.181 | 221 | 77 | 2 | 1 | 221 | 1 | 210 | 1.61e-91 | 268 |
Msa0376430 | AT4G17615.1 | 60.181 | 221 | 77 | 2 | 1 | 221 | 1 | 210 | 1.61e-91 | 268 |
Msa0376430 | AT4G17615.5 | 60.181 | 221 | 77 | 2 | 1 | 221 | 1 | 210 | 1.61e-91 | 268 |
Msa0376430 | AT5G47100.1 | 59.729 | 221 | 78 | 2 | 1 | 221 | 1 | 210 | 4.65e-91 | 266 |
Msa0376430 | AT1G64480.2 | 61.751 | 217 | 74 | 1 | 5 | 221 | 7 | 214 | 9.07e-91 | 266 |
Msa0376430 | AT1G64480.3 | 61.751 | 217 | 74 | 1 | 5 | 221 | 7 | 214 | 9.07e-91 | 266 |
Msa0376430 | AT1G64480.1 | 61.751 | 217 | 74 | 1 | 5 | 221 | 7 | 214 | 9.07e-91 | 266 |
Msa0376430 | AT4G26570.1 | 59.242 | 211 | 77 | 1 | 12 | 222 | 25 | 226 | 1.02e-88 | 261 |
Msa0376430 | AT4G33000.2 | 66.667 | 183 | 61 | 0 | 39 | 221 | 64 | 246 | 1.05e-86 | 257 |
Msa0376430 | AT4G26570.2 | 58.140 | 215 | 77 | 2 | 12 | 222 | 25 | 230 | 1.44e-86 | 256 |
Msa0376430 | AT4G33000.1 | 66.667 | 183 | 61 | 0 | 39 | 221 | 74 | 256 | 1.69e-86 | 256 |
Msa0376430 | AT5G24270.3 | 74.233 | 163 | 42 | 0 | 61 | 223 | 7 | 169 | 3.47e-86 | 253 |
Msa0376430 | AT5G55990.1 | 55.856 | 222 | 87 | 2 | 1 | 222 | 16 | 226 | 4.35e-86 | 254 |
Msa0376430 | AT5G55990.2 | 55.856 | 222 | 87 | 2 | 1 | 222 | 16 | 226 | 4.35e-86 | 254 |
Msa0376430 | AT4G17615.3 | 60.870 | 207 | 70 | 2 | 1 | 207 | 1 | 196 | 2.09e-84 | 251 |
Msa0376430 | AT1G64480.4 | 61.500 | 200 | 68 | 1 | 5 | 204 | 7 | 197 | 7.03e-82 | 243 |
Msa0376430 | AT4G16350.2 | 57.065 | 184 | 75 | 1 | 39 | 222 | 41 | 220 | 5.55e-73 | 221 |
Msa0376430 | AT4G16350.1 | 57.065 | 184 | 75 | 1 | 39 | 222 | 41 | 220 | 5.55e-73 | 221 |
Msa0376430 | AT4G17615.2 | 63.694 | 157 | 57 | 0 | 65 | 221 | 12 | 168 | 2.61e-71 | 215 |
Msa0376430 | AT4G01420.1 | 47.664 | 214 | 100 | 2 | 1 | 214 | 1 | 202 | 2.71e-66 | 203 |
Msa0376430 | AT5G47100.2 | 59.524 | 168 | 57 | 2 | 1 | 168 | 1 | 157 | 3.06e-65 | 200 |
Msa0376430 | AT4G01420.2 | 47.549 | 204 | 95 | 2 | 1 | 204 | 1 | 192 | 2.06e-62 | 193 |
Msa0376430 | AT4G26560.1 | 47.396 | 192 | 88 | 2 | 44 | 222 | 23 | 214 | 5.09e-61 | 190 |
Msa0376430 | AT4G33000.4 | 65.116 | 129 | 45 | 0 | 39 | 167 | 64 | 192 | 1.01e-54 | 174 |
Msa0376430 | AT4G33000.6 | 65.116 | 129 | 45 | 0 | 39 | 167 | 64 | 192 | 1.01e-54 | 174 |
Msa0376430 | AT4G33000.5 | 65.625 | 128 | 44 | 0 | 39 | 166 | 64 | 191 | 1.42e-54 | 174 |
Msa0376430 | AT4G33000.3 | 66.667 | 81 | 27 | 0 | 39 | 119 | 64 | 144 | 4.68e-31 | 112 |
Find 50 sgRNAs with CRISPR-Local
Find 186 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATAGTCTTACTTATTGTTAT+TGG | 0.178074 | 3_1:+76533931 | None:intergenic |
ACTCAGAGGGTTGACTAATT+AGG | 0.204998 | 3_1:-76534140 | Msa0376430:exon |
TTCTGTTCTTGCAATAAAAC+TGG | 0.228799 | 3_1:+76534170 | None:intergenic |
CGCAACGGCGTTATTGAGTT+TGG | 0.301486 | 3_1:-76534948 | Msa0376430:CDS |
CTCAGAGGGTTGACTAATTA+GGG | 0.347563 | 3_1:-76534139 | Msa0376430:exon |
GGTTACACTTACTTTAGATA+TGG | 0.371596 | 3_1:+76534301 | None:intergenic |
AATTCCAGCTAGCACTCTTC+AGG | 0.371966 | 3_1:-76535220 | Msa0376430:CDS |
TTGTATGATCTGAGGCAAAC+AGG | 0.377411 | 3_1:-76534706 | Msa0376430:CDS |
GCAGTTAAAGGAAATGGTAT+TGG | 0.379876 | 3_1:-76534584 | Msa0376430:intron |
GGTGAATTTGTTCGATCTCT+TGG | 0.384084 | 3_1:-76534927 | Msa0376430:CDS |
GTCATGTTCTTTATCAAAGA+TGG | 0.400140 | 3_1:+76534328 | None:intergenic |
AGCAATTCAATTATTGAAGA+TGG | 0.401125 | 3_1:-76535361 | Msa0376430:CDS |
TTGTCTTCTAAAGCCGCATT+TGG | 0.412464 | 3_1:+76534894 | None:intergenic |
TTATTTGCAGTTAAAGGAAA+TGG | 0.412783 | 3_1:-76534590 | Msa0376430:intron |
GATAGAGGCTATTGTGGATA+AGG | 0.439938 | 3_1:-76534521 | Msa0376430:intron |
TATCCATCTTCATCATTAAC+CGG | 0.453433 | 3_1:-76535526 | Msa0376430:intron |
GATTAAAGTGTAGTCACTAT+TGG | 0.470500 | 3_1:+76534111 | None:intergenic |
CATTCCTGAAGAGTGCTAGC+TGG | 0.479014 | 3_1:+76535216 | None:intergenic |
TAAACTCTTAAGTTGAAAGA+TGG | 0.501693 | 3_1:+76533996 | None:intergenic |
GATGCTGATACAAAAGATGA+TGG | 0.508848 | 3_1:-76534394 | Msa0376430:CDS |
GCTTTCAGATGATATGATAG+AGG | 0.531839 | 3_1:-76534536 | Msa0376430:CDS |
GAGAGACGTTATCAAAGAGA+AGG | 0.533906 | 3_1:-76534042 | Msa0376430:three_prime_UTR |
ACACTTACTTTAGATATGGA+AGG | 0.535196 | 3_1:+76534305 | None:intergenic |
AATAAAACTGGGAAATGCTA+AGG | 0.541646 | 3_1:+76534182 | None:intergenic |
GGACCATGTAATGTAAAACT+TGG | 0.548685 | 3_1:-76534019 | Msa0376430:three_prime_UTR |
TTACCGGTTAATGATGAAGA+TGG | 0.551660 | 3_1:+76535523 | None:intergenic |
AGAGACGTTATCAAAGAGAA+GGG | 0.555606 | 3_1:-76534041 | Msa0376430:three_prime_UTR |
TACTTATTGTTATTGGAACA+AGG | 0.556750 | 3_1:+76533938 | None:intergenic |
TAAAACACCACCAGGCTATG+AGG | 0.560691 | 3_1:-76535584 | Msa0376430:CDS |
CTGATACAAAAGATGATGGA+AGG | 0.564303 | 3_1:-76534390 | Msa0376430:CDS |
CACTTACTTTAGATATGGAA+GGG | 0.565574 | 3_1:+76534306 | None:intergenic |
TGATATGATAGAGGCTATTG+TGG | 0.568591 | 3_1:-76534527 | Msa0376430:CDS |
ACTGTGGGATCCTCATAGCC+TGG | 0.572736 | 3_1:+76535574 | None:intergenic |
TCTGTTCTTGCAATAAAACT+GGG | 0.575355 | 3_1:+76534171 | None:intergenic |
TGAAGATGGTCTTATTCACA+AGG | 0.588994 | 3_1:-76535347 | Msa0376430:intron |
GTTTCAGAAGCAAGAACTGT+GGG | 0.589683 | 3_1:+76535559 | None:intergenic |
AACAGAAGTTGAAGACTCAG+AGG | 0.590695 | 3_1:-76534154 | Msa0376430:CDS |
TTATTTGATGTTAAGCGCAA+CGG | 0.591522 | 3_1:-76534963 | Msa0376430:CDS |
GAAGGATTGATCAAGATGAG+TGG | 0.600746 | 3_1:-76534372 | Msa0376430:CDS |
TGTATGATCTGAGGCAAACA+GGG | 0.613793 | 3_1:-76534705 | Msa0376430:CDS |
AGTTACTGTGAGTGAAGTAG+AGG | 0.623440 | 3_1:-76535410 | Msa0376430:CDS |
ACAGAAGTTGAAGACTCAGA+GGG | 0.628937 | 3_1:-76534153 | Msa0376430:CDS |
AGGGTACATTGAAAGAGAAG+AGG | 0.631645 | 3_1:-76534686 | Msa0376430:intron |
AAGAATGTTAAAACACCACC+AGG | 0.637444 | 3_1:-76535592 | Msa0376430:CDS |
TAAGACTATTGTCTATTGTG+TGG | 0.662864 | 3_1:-76533917 | None:intergenic |
GAGACGTTATCAAAGAGAAG+GGG | 0.663350 | 3_1:-76534040 | Msa0376430:three_prime_UTR |
GTGGGATCCTCATAGCCTGG+TGG | 0.686147 | 3_1:+76535577 | None:intergenic |
TGTTTCAGAAGCAAGAACTG+TGG | 0.689885 | 3_1:+76535558 | None:intergenic |
GATGAAGATGGATACTCACA+AGG | 0.700807 | 3_1:+76535535 | None:intergenic |
AGAGGGTTGACTAATTAGGG+AGG | 0.712501 | 3_1:-76534136 | Msa0376430:exon |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATATATATATATATATATAT+AGG | - | chr3_1:76535470-76535489 | Msa0376430:intron | 0.0% |
!! | ATATATATATATATATATAT+AGG | - | chr3_1:76535470-76535489 | Msa0376430:intron | 0.0% |
!! | ATTTCATAAATCTATTTATT+AGG | + | chr3_1:76534049-76534068 | None:intergenic | 10.0% |
!!! | ATTTGTTTTAATCAATTTTA+AGG | + | chr3_1:76534081-76534100 | None:intergenic | 10.0% |
!! | CTATATTAATATTAAACTTT+AGG | - | chr3_1:76534889-76534908 | Msa0376430:CDS | 10.0% |
!! | ATTTCATAAATCTATTTATT+AGG | + | chr3_1:76534049-76534068 | None:intergenic | 10.0% |
!!! | ATTTGTTTTAATCAATTTTA+AGG | + | chr3_1:76534081-76534100 | None:intergenic | 10.0% |
!! | CTATATTAATATTAAACTTT+AGG | - | chr3_1:76534889-76534908 | Msa0376430:CDS | 10.0% |
!! | ACAAAAATATTATTACTTCT+AGG | - | chr3_1:76534290-76534309 | Msa0376430:intron | 15.0% |
!! | TTATGGTTATTTATTGAATT+GGG | - | chr3_1:76534779-76534798 | Msa0376430:intron | 15.0% |
!! | ACAAAAATATTATTACTTCT+AGG | - | chr3_1:76534290-76534309 | Msa0376430:intron | 15.0% |
!! | TTATGGTTATTTATTGAATT+GGG | - | chr3_1:76534779-76534798 | Msa0376430:intron | 15.0% |
!! | TCATAAATCTATTTATTAGG+TGG | + | chr3_1:76534046-76534065 | None:intergenic | 20.0% |
!! | AATAAGTCAAAAATCTATAG+AGG | + | chr3_1:76534558-76534577 | None:intergenic | 20.0% |
!! | TTATAACTCTTGCTTAATAT+AGG | + | chr3_1:76534755-76534774 | None:intergenic | 20.0% |
!! | GTTATGGTTATTTATTGAAT+TGG | - | chr3_1:76534778-76534797 | Msa0376430:intron | 20.0% |
!! | TTTAATCTTATGTTAGAACT+TGG | - | chr3_1:76534914-76534933 | Msa0376430:CDS | 20.0% |
!! | TTTAAATGTAACAATCGTAA+TGG | + | chr3_1:76535060-76535079 | None:intergenic | 20.0% |
!!! | AAAAATGGATTTTCATTAAG+AGG | + | chr3_1:76535259-76535278 | None:intergenic | 20.0% |
!!! | AATCCATTTTTTTTATTGAC+TGG | - | chr3_1:76535268-76535287 | Msa0376430:intron | 20.0% |
!! | ATTCCAGTCAATAAAAAAAA+TGG | + | chr3_1:76535274-76535293 | None:intergenic | 20.0% |
!!! | ATAGTCTTACTTATTGTTAT+TGG | + | chr3_1:76535608-76535627 | None:intergenic | 20.0% |
!! | TCATAAATCTATTTATTAGG+TGG | + | chr3_1:76534046-76534065 | None:intergenic | 20.0% |
!! | AATAAGTCAAAAATCTATAG+AGG | + | chr3_1:76534558-76534577 | None:intergenic | 20.0% |
!! | TTATAACTCTTGCTTAATAT+AGG | + | chr3_1:76534755-76534774 | None:intergenic | 20.0% |
!! | GTTATGGTTATTTATTGAAT+TGG | - | chr3_1:76534778-76534797 | Msa0376430:intron | 20.0% |
!! | TTTAATCTTATGTTAGAACT+TGG | - | chr3_1:76534914-76534933 | Msa0376430:CDS | 20.0% |
!! | TTTAAATGTAACAATCGTAA+TGG | + | chr3_1:76535060-76535079 | None:intergenic | 20.0% |
!!! | AAAAATGGATTTTCATTAAG+AGG | + | chr3_1:76535259-76535278 | None:intergenic | 20.0% |
!!! | AATCCATTTTTTTTATTGAC+TGG | - | chr3_1:76535268-76535287 | Msa0376430:intron | 20.0% |
!! | ATTCCAGTCAATAAAAAAAA+TGG | + | chr3_1:76535274-76535293 | None:intergenic | 20.0% |
!!! | ATAGTCTTACTTATTGTTAT+TGG | + | chr3_1:76535608-76535627 | None:intergenic | 20.0% |
! | AGCAATTCAATTATTGAAGA+TGG | - | chr3_1:76534175-76534194 | Msa0376430:CDS | 25.0% |
! | AGATAAAATGTCCTTAATTC+AGG | - | chr3_1:76534252-76534271 | Msa0376430:intron | 25.0% |
! | TATAACTCATCCATACTTTA+TGG | - | chr3_1:76534377-76534396 | Msa0376430:CDS | 25.0% |
! | GCAAGAGTTATAATATGTTA+TGG | - | chr3_1:76534762-76534781 | Msa0376430:intron | 25.0% |
! | TTATTTGCAGTTAAAGGAAA+TGG | - | chr3_1:76534946-76534965 | Msa0376430:CDS | 25.0% |
!!! | TAAACTCTTAAGTTGAAAGA+TGG | + | chr3_1:76535543-76535562 | None:intergenic | 25.0% |
!! | TACTTATTGTTATTGGAACA+AGG | + | chr3_1:76535601-76535620 | None:intergenic | 25.0% |
! | AGCAATTCAATTATTGAAGA+TGG | - | chr3_1:76534175-76534194 | Msa0376430:CDS | 25.0% |
! | AGATAAAATGTCCTTAATTC+AGG | - | chr3_1:76534252-76534271 | Msa0376430:intron | 25.0% |
! | TATAACTCATCCATACTTTA+TGG | - | chr3_1:76534377-76534396 | Msa0376430:CDS | 25.0% |
! | GCAAGAGTTATAATATGTTA+TGG | - | chr3_1:76534762-76534781 | Msa0376430:intron | 25.0% |
! | TTATTTGCAGTTAAAGGAAA+TGG | - | chr3_1:76534946-76534965 | Msa0376430:CDS | 25.0% |
!!! | TAAACTCTTAAGTTGAAAGA+TGG | + | chr3_1:76535543-76535562 | None:intergenic | 25.0% |
!! | TACTTATTGTTATTGGAACA+AGG | + | chr3_1:76535601-76535620 | None:intergenic | 25.0% |
TATCCATCTTCATCATTAAC+CGG | - | chr3_1:76534010-76534029 | Msa0376430:three_prime_UTR | 30.0% | |
TAAAATGTCCTTAATTCAGG+TGG | - | chr3_1:76534255-76534274 | Msa0376430:intron | 30.0% | |
CAAGTTTAGACCATAAAGTA+TGG | + | chr3_1:76534390-76534409 | None:intergenic | 30.0% | |
GCATTAGAATGAAATAATGC+AGG | + | chr3_1:76534517-76534536 | None:intergenic | 30.0% | |
TTATTTGATGTTAAGCGCAA+CGG | - | chr3_1:76534573-76534592 | Msa0376430:CDS | 30.0% | |
ATAGGAAACTCCAAAACTTA+GGG | + | chr3_1:76534737-76534756 | None:intergenic | 30.0% | |
TATAGGAAACTCCAAAACTT+AGG | + | chr3_1:76534738-76534757 | None:intergenic | 30.0% | |
!!! | TGATATTTGCAGTTGCTTTT+AGG | - | chr3_1:76534807-76534826 | Msa0376430:intron | 30.0% |
TATGTTAGAACTTGGAATCA+TGG | - | chr3_1:76534922-76534941 | Msa0376430:CDS | 30.0% | |
CATGGTTTATTTGCAGTTAA+AGG | - | chr3_1:76534940-76534959 | Msa0376430:CDS | 30.0% | |
GTCATGTTCTTTATCAAAGA+TGG | + | chr3_1:76535211-76535230 | None:intergenic | 30.0% | |
CACTTACTTTAGATATGGAA+GGG | + | chr3_1:76535233-76535252 | None:intergenic | 30.0% | |
ACACTTACTTTAGATATGGA+AGG | + | chr3_1:76535234-76535253 | None:intergenic | 30.0% | |
GGTTACACTTACTTTAGATA+TGG | + | chr3_1:76535238-76535257 | None:intergenic | 30.0% | |
AATAAAACTGGGAAATGCTA+AGG | + | chr3_1:76535357-76535376 | None:intergenic | 30.0% | |
TCTGTTCTTGCAATAAAACT+GGG | + | chr3_1:76535368-76535387 | None:intergenic | 30.0% | |
TTCTGTTCTTGCAATAAAAC+TGG | + | chr3_1:76535369-76535388 | None:intergenic | 30.0% | |
GATTAAAGTGTAGTCACTAT+TGG | + | chr3_1:76535428-76535447 | None:intergenic | 30.0% | |
TATCCATCTTCATCATTAAC+CGG | - | chr3_1:76534010-76534029 | Msa0376430:three_prime_UTR | 30.0% | |
TAAAATGTCCTTAATTCAGG+TGG | - | chr3_1:76534255-76534274 | Msa0376430:intron | 30.0% | |
CAAGTTTAGACCATAAAGTA+TGG | + | chr3_1:76534390-76534409 | None:intergenic | 30.0% | |
GCATTAGAATGAAATAATGC+AGG | + | chr3_1:76534517-76534536 | None:intergenic | 30.0% | |
TTATTTGATGTTAAGCGCAA+CGG | - | chr3_1:76534573-76534592 | Msa0376430:CDS | 30.0% | |
ATAGGAAACTCCAAAACTTA+GGG | + | chr3_1:76534737-76534756 | None:intergenic | 30.0% | |
TATAGGAAACTCCAAAACTT+AGG | + | chr3_1:76534738-76534757 | None:intergenic | 30.0% | |
!!! | TGATATTTGCAGTTGCTTTT+AGG | - | chr3_1:76534807-76534826 | Msa0376430:intron | 30.0% |
TATGTTAGAACTTGGAATCA+TGG | - | chr3_1:76534922-76534941 | Msa0376430:CDS | 30.0% | |
CATGGTTTATTTGCAGTTAA+AGG | - | chr3_1:76534940-76534959 | Msa0376430:CDS | 30.0% | |
GTCATGTTCTTTATCAAAGA+TGG | + | chr3_1:76535211-76535230 | None:intergenic | 30.0% | |
CACTTACTTTAGATATGGAA+GGG | + | chr3_1:76535233-76535252 | None:intergenic | 30.0% | |
ACACTTACTTTAGATATGGA+AGG | + | chr3_1:76535234-76535253 | None:intergenic | 30.0% | |
GGTTACACTTACTTTAGATA+TGG | + | chr3_1:76535238-76535257 | None:intergenic | 30.0% | |
AATAAAACTGGGAAATGCTA+AGG | + | chr3_1:76535357-76535376 | None:intergenic | 30.0% | |
TCTGTTCTTGCAATAAAACT+GGG | + | chr3_1:76535368-76535387 | None:intergenic | 30.0% | |
TTCTGTTCTTGCAATAAAAC+TGG | + | chr3_1:76535369-76535388 | None:intergenic | 30.0% | |
GATTAAAGTGTAGTCACTAT+TGG | + | chr3_1:76535428-76535447 | None:intergenic | 30.0% | |
AAGAATGTTAAAACACCACC+AGG | - | chr3_1:76533944-76533963 | Msa0376430:three_prime_UTR | 35.0% | |
! | TTACCGGTTAATGATGAAGA+TGG | + | chr3_1:76534016-76534035 | None:intergenic | 35.0% |
ATTAGGTGGAACAGAATTAC+CGG | + | chr3_1:76534032-76534051 | None:intergenic | 35.0% | |
!! | TGAAGATGGTCTTATTCACA+AGG | - | chr3_1:76534189-76534208 | Msa0376430:CDS | 35.0% |
AGAAAAATCTGTTTGCAGAC+AGG | - | chr3_1:76534349-76534368 | Msa0376430:CDS | 35.0% | |
GAAAAATCTGTTTGCAGACA+GGG | - | chr3_1:76534350-76534369 | Msa0376430:CDS | 35.0% | |
!!! | AAGCTCTAGGATCTTTTGAT+AGG | - | chr3_1:76534426-76534445 | Msa0376430:intron | 35.0% |
GAGGAGAAACAATTGTGAAA+AGG | + | chr3_1:76534539-76534558 | None:intergenic | 35.0% | |
! | TGGTGTTTTTCATCCAAATG+CGG | - | chr3_1:76534629-76534648 | Msa0376430:intron | 35.0% |
! | TTTGTCCTTTCCCTAAGTTT+TGG | - | chr3_1:76534724-76534743 | Msa0376430:intron | 35.0% |
AAACTCCAAAACTTAGGGAA+AGG | + | chr3_1:76534732-76534751 | None:intergenic | 35.0% | |
!!! | CTTTTAGGTTGTATGATCTG+AGG | - | chr3_1:76534822-76534841 | Msa0376430:intron | 35.0% |
GCAGTTAAAGGAAATGGTAT+TGG | - | chr3_1:76534952-76534971 | Msa0376430:CDS | 35.0% | |
GCTTTCAGATGATATGATAG+AGG | - | chr3_1:76535000-76535019 | Msa0376430:intron | 35.0% | |
TGATATGATAGAGGCTATTG+TGG | - | chr3_1:76535009-76535028 | Msa0376430:intron | 35.0% | |
ATGTAACAATCGTAATGGCA+AGG | + | chr3_1:76535055-76535074 | None:intergenic | 35.0% | |
GATGCTGATACAAAAGATGA+TGG | - | chr3_1:76535142-76535161 | Msa0376430:intron | 35.0% | |
!! | CTGATACAAAAGATGATGGA+AGG | - | chr3_1:76535146-76535165 | Msa0376430:intron | 35.0% |
AATATCCCTACAAAATGTGG+AGG | + | chr3_1:76535333-76535352 | None:intergenic | 35.0% | |
GGTAATATCCCTACAAAATG+TGG | + | chr3_1:76535336-76535355 | None:intergenic | 35.0% | |
AGAGACGTTATCAAAGAGAA+GGG | - | chr3_1:76535495-76535514 | Msa0376430:intron | 35.0% | |
GGACCATGTAATGTAAAACT+TGG | - | chr3_1:76535517-76535536 | Msa0376430:intron | 35.0% | |
! | TGGCCAAGTTTTACATTACA+TGG | + | chr3_1:76535523-76535542 | None:intergenic | 35.0% |
AAGAATGTTAAAACACCACC+AGG | - | chr3_1:76533944-76533963 | Msa0376430:three_prime_UTR | 35.0% | |
! | TTACCGGTTAATGATGAAGA+TGG | + | chr3_1:76534016-76534035 | None:intergenic | 35.0% |
ATTAGGTGGAACAGAATTAC+CGG | + | chr3_1:76534032-76534051 | None:intergenic | 35.0% | |
!! | TGAAGATGGTCTTATTCACA+AGG | - | chr3_1:76534189-76534208 | Msa0376430:CDS | 35.0% |
AGAAAAATCTGTTTGCAGAC+AGG | - | chr3_1:76534349-76534368 | Msa0376430:CDS | 35.0% | |
GAAAAATCTGTTTGCAGACA+GGG | - | chr3_1:76534350-76534369 | Msa0376430:CDS | 35.0% | |
!!! | AAGCTCTAGGATCTTTTGAT+AGG | - | chr3_1:76534426-76534445 | Msa0376430:intron | 35.0% |
GAGGAGAAACAATTGTGAAA+AGG | + | chr3_1:76534539-76534558 | None:intergenic | 35.0% | |
! | TGGTGTTTTTCATCCAAATG+CGG | - | chr3_1:76534629-76534648 | Msa0376430:intron | 35.0% |
! | TTTGTCCTTTCCCTAAGTTT+TGG | - | chr3_1:76534724-76534743 | Msa0376430:intron | 35.0% |
AAACTCCAAAACTTAGGGAA+AGG | + | chr3_1:76534732-76534751 | None:intergenic | 35.0% | |
!!! | CTTTTAGGTTGTATGATCTG+AGG | - | chr3_1:76534822-76534841 | Msa0376430:intron | 35.0% |
GCAGTTAAAGGAAATGGTAT+TGG | - | chr3_1:76534952-76534971 | Msa0376430:CDS | 35.0% | |
GCTTTCAGATGATATGATAG+AGG | - | chr3_1:76535000-76535019 | Msa0376430:intron | 35.0% | |
TGATATGATAGAGGCTATTG+TGG | - | chr3_1:76535009-76535028 | Msa0376430:intron | 35.0% | |
ATGTAACAATCGTAATGGCA+AGG | + | chr3_1:76535055-76535074 | None:intergenic | 35.0% | |
GATGCTGATACAAAAGATGA+TGG | - | chr3_1:76535142-76535161 | Msa0376430:intron | 35.0% | |
!! | CTGATACAAAAGATGATGGA+AGG | - | chr3_1:76535146-76535165 | Msa0376430:intron | 35.0% |
AATATCCCTACAAAATGTGG+AGG | + | chr3_1:76535333-76535352 | None:intergenic | 35.0% | |
GGTAATATCCCTACAAAATG+TGG | + | chr3_1:76535336-76535355 | None:intergenic | 35.0% | |
AGAGACGTTATCAAAGAGAA+GGG | - | chr3_1:76535495-76535514 | Msa0376430:intron | 35.0% | |
GGACCATGTAATGTAAAACT+TGG | - | chr3_1:76535517-76535536 | Msa0376430:intron | 35.0% | |
! | TGGCCAAGTTTTACATTACA+TGG | + | chr3_1:76535523-76535542 | None:intergenic | 35.0% |
GTTTCAGAAGCAAGAACTGT+GGG | + | chr3_1:76533980-76533999 | None:intergenic | 40.0% | |
TGTTTCAGAAGCAAGAACTG+TGG | + | chr3_1:76533981-76534000 | None:intergenic | 40.0% | |
GATGAAGATGGATACTCACA+AGG | + | chr3_1:76534004-76534023 | None:intergenic | 40.0% | |
AGTTACTGTGAGTGAAGTAG+AGG | - | chr3_1:76534126-76534145 | Msa0376430:three_prime_UTR | 40.0% | |
! | GAGATTAGCCACCTGAATTA+AGG | + | chr3_1:76534266-76534285 | None:intergenic | 40.0% |
GATCTTCTTGTTCAAGCTCT+AGG | - | chr3_1:76534413-76534432 | Msa0376430:intron | 40.0% | |
! | GGTGAATTTGTTCGATCTCT+TGG | - | chr3_1:76534609-76534628 | Msa0376430:intron | 40.0% |
!! | TTGTCTTCTAAAGCCGCATT+TGG | + | chr3_1:76534645-76534664 | None:intergenic | 40.0% |
! | TTGTATGATCTGAGGCAAAC+AGG | - | chr3_1:76534830-76534849 | Msa0376430:intron | 40.0% |
! | TGTATGATCTGAGGCAAACA+GGG | - | chr3_1:76534831-76534850 | Msa0376430:intron | 40.0% |
AGGGTACATTGAAAGAGAAG+AGG | - | chr3_1:76534850-76534869 | Msa0376430:intron | 40.0% | |
GATAGAGGCTATTGTGGATA+AGG | - | chr3_1:76535015-76535034 | Msa0376430:intron | 40.0% | |
GAAGGATTGATCAAGATGAG+TGG | - | chr3_1:76535164-76535183 | Msa0376430:intron | 40.0% | |
AACAGAAGTTGAAGACTCAG+AGG | - | chr3_1:76535382-76535401 | Msa0376430:CDS | 40.0% | |
ACAGAAGTTGAAGACTCAGA+GGG | - | chr3_1:76535383-76535402 | Msa0376430:CDS | 40.0% | |
ACTCAGAGGGTTGACTAATT+AGG | - | chr3_1:76535396-76535415 | Msa0376430:CDS | 40.0% | |
CTCAGAGGGTTGACTAATTA+GGG | - | chr3_1:76535397-76535416 | Msa0376430:CDS | 40.0% | |
GAGAGACGTTATCAAAGAGA+AGG | - | chr3_1:76535494-76535513 | Msa0376430:intron | 40.0% | |
GAGACGTTATCAAAGAGAAG+GGG | - | chr3_1:76535496-76535515 | Msa0376430:intron | 40.0% | |
GTTTCAGAAGCAAGAACTGT+GGG | + | chr3_1:76533980-76533999 | None:intergenic | 40.0% | |
TGTTTCAGAAGCAAGAACTG+TGG | + | chr3_1:76533981-76534000 | None:intergenic | 40.0% | |
GATGAAGATGGATACTCACA+AGG | + | chr3_1:76534004-76534023 | None:intergenic | 40.0% | |
AGTTACTGTGAGTGAAGTAG+AGG | - | chr3_1:76534126-76534145 | Msa0376430:three_prime_UTR | 40.0% | |
! | GAGATTAGCCACCTGAATTA+AGG | + | chr3_1:76534266-76534285 | None:intergenic | 40.0% |
GATCTTCTTGTTCAAGCTCT+AGG | - | chr3_1:76534413-76534432 | Msa0376430:intron | 40.0% | |
! | GGTGAATTTGTTCGATCTCT+TGG | - | chr3_1:76534609-76534628 | Msa0376430:intron | 40.0% |
!! | TTGTCTTCTAAAGCCGCATT+TGG | + | chr3_1:76534645-76534664 | None:intergenic | 40.0% |
! | TTGTATGATCTGAGGCAAAC+AGG | - | chr3_1:76534830-76534849 | Msa0376430:intron | 40.0% |
! | TGTATGATCTGAGGCAAACA+GGG | - | chr3_1:76534831-76534850 | Msa0376430:intron | 40.0% |
AGGGTACATTGAAAGAGAAG+AGG | - | chr3_1:76534850-76534869 | Msa0376430:intron | 40.0% | |
GATAGAGGCTATTGTGGATA+AGG | - | chr3_1:76535015-76535034 | Msa0376430:intron | 40.0% | |
GAAGGATTGATCAAGATGAG+TGG | - | chr3_1:76535164-76535183 | Msa0376430:intron | 40.0% | |
AACAGAAGTTGAAGACTCAG+AGG | - | chr3_1:76535382-76535401 | Msa0376430:CDS | 40.0% | |
ACAGAAGTTGAAGACTCAGA+GGG | - | chr3_1:76535383-76535402 | Msa0376430:CDS | 40.0% | |
ACTCAGAGGGTTGACTAATT+AGG | - | chr3_1:76535396-76535415 | Msa0376430:CDS | 40.0% | |
CTCAGAGGGTTGACTAATTA+GGG | - | chr3_1:76535397-76535416 | Msa0376430:CDS | 40.0% | |
GAGAGACGTTATCAAAGAGA+AGG | - | chr3_1:76535494-76535513 | Msa0376430:intron | 40.0% | |
GAGACGTTATCAAAGAGAAG+GGG | - | chr3_1:76535496-76535515 | Msa0376430:intron | 40.0% | |
TAAAACACCACCAGGCTATG+AGG | - | chr3_1:76533952-76533971 | Msa0376430:three_prime_UTR | 45.0% | |
AATTCCAGCTAGCACTCTTC+AGG | - | chr3_1:76534316-76534335 | Msa0376430:CDS | 45.0% | |
! | ATGCCTCCTCCACATTTTGT+AGG | - | chr3_1:76535324-76535343 | Msa0376430:intron | 45.0% |
! | TGCCTCCTCCACATTTTGTA+GGG | - | chr3_1:76535325-76535344 | Msa0376430:intron | 45.0% |
ATCCCTACAAAATGTGGAGG+AGG | + | chr3_1:76535330-76535349 | None:intergenic | 45.0% | |
AGAGGGTTGACTAATTAGGG+AGG | - | chr3_1:76535400-76535419 | Msa0376430:CDS | 45.0% | |
TAAAACACCACCAGGCTATG+AGG | - | chr3_1:76533952-76533971 | Msa0376430:three_prime_UTR | 45.0% | |
AATTCCAGCTAGCACTCTTC+AGG | - | chr3_1:76534316-76534335 | Msa0376430:CDS | 45.0% | |
! | ATGCCTCCTCCACATTTTGT+AGG | - | chr3_1:76535324-76535343 | Msa0376430:intron | 45.0% |
! | TGCCTCCTCCACATTTTGTA+GGG | - | chr3_1:76535325-76535344 | Msa0376430:intron | 45.0% |
ATCCCTACAAAATGTGGAGG+AGG | + | chr3_1:76535330-76535349 | None:intergenic | 45.0% | |
AGAGGGTTGACTAATTAGGG+AGG | - | chr3_1:76535400-76535419 | Msa0376430:CDS | 45.0% | |
!! | CATTCCTGAAGAGTGCTAGC+TGG | + | chr3_1:76534323-76534342 | None:intergenic | 50.0% |
CGCAACGGCGTTATTGAGTT+TGG | - | chr3_1:76534588-76534607 | Msa0376430:intron | 50.0% | |
!! | CATTCCTGAAGAGTGCTAGC+TGG | + | chr3_1:76534323-76534342 | None:intergenic | 50.0% |
CGCAACGGCGTTATTGAGTT+TGG | - | chr3_1:76534588-76534607 | Msa0376430:intron | 50.0% | |
ACTGTGGGATCCTCATAGCC+TGG | + | chr3_1:76533965-76533984 | None:intergenic | 55.0% | |
ACTGTGGGATCCTCATAGCC+TGG | + | chr3_1:76533965-76533984 | None:intergenic | 55.0% | |
GTGGGATCCTCATAGCCTGG+TGG | + | chr3_1:76533962-76533981 | None:intergenic | 60.0% | |
GTGGGATCCTCATAGCCTGG+TGG | + | chr3_1:76533962-76533981 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3_1 | gene | 76533920 | 76535638 | 76533920 | ID=Msa0376430;Name=Msa0376430 |
chr3_1 | mRNA | 76533920 | 76535638 | 76533920 | ID=Msa0376430-mRNA-1;Parent=Msa0376430;Name=Msa0376430-mRNA-1;_AED=0.24;_eAED=0.26;_QI=0|0.85|0.87|1|1|1|8|229|224 |
chr3_1 | exon | 76533920 | 76534212 | 76533920 | ID=Msa0376430-mRNA-1:exon:18207;Parent=Msa0376430-mRNA-1 |
chr3_1 | exon | 76534313 | 76534425 | 76534313 | ID=Msa0376430-mRNA-1:exon:18206;Parent=Msa0376430-mRNA-1 |
chr3_1 | exon | 76534522 | 76534602 | 76534522 | ID=Msa0376430-mRNA-1:exon:18205;Parent=Msa0376430-mRNA-1 |
chr3_1 | exon | 76534687 | 76534739 | 76534687 | ID=Msa0376430-mRNA-1:exon:18204;Parent=Msa0376430-mRNA-1 |
chr3_1 | exon | 76534886 | 76534994 | 76534886 | ID=Msa0376430-mRNA-1:exon:18203;Parent=Msa0376430-mRNA-1 |
chr3_1 | exon | 76535187 | 76535246 | 76535187 | ID=Msa0376430-mRNA-1:exon:18202;Parent=Msa0376430-mRNA-1 |
chr3_1 | exon | 76535348 | 76535430 | 76535348 | ID=Msa0376430-mRNA-1:exon:18201;Parent=Msa0376430-mRNA-1 |
chr3_1 | exon | 76535527 | 76535638 | 76535527 | ID=Msa0376430-mRNA-1:exon:18200;Parent=Msa0376430-mRNA-1 |
chr3_1 | CDS | 76535527 | 76535638 | 76535527 | ID=Msa0376430-mRNA-1:cds;Parent=Msa0376430-mRNA-1 |
chr3_1 | CDS | 76535348 | 76535430 | 76535348 | ID=Msa0376430-mRNA-1:cds;Parent=Msa0376430-mRNA-1 |
chr3_1 | CDS | 76535187 | 76535246 | 76535187 | ID=Msa0376430-mRNA-1:cds;Parent=Msa0376430-mRNA-1 |
chr3_1 | CDS | 76534886 | 76534994 | 76534886 | ID=Msa0376430-mRNA-1:cds;Parent=Msa0376430-mRNA-1 |
chr3_1 | CDS | 76534687 | 76534739 | 76534687 | ID=Msa0376430-mRNA-1:cds;Parent=Msa0376430-mRNA-1 |
chr3_1 | CDS | 76534522 | 76534602 | 76534522 | ID=Msa0376430-mRNA-1:cds;Parent=Msa0376430-mRNA-1 |
chr3_1 | CDS | 76534313 | 76534425 | 76534313 | ID=Msa0376430-mRNA-1:cds;Parent=Msa0376430-mRNA-1 |
chr3_1 | CDS | 76534149 | 76534212 | 76534149 | ID=Msa0376430-mRNA-1:cds;Parent=Msa0376430-mRNA-1 |
chr3_1 | three_prime_UTR | 76533920 | 76534148 | 76533920 | ID=Msa0376430-mRNA-1:three_prime_utr;Parent=Msa0376430-mRNA-1 |
Gene Sequence |
Protein sequence |