AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0376430


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0376430 MtrunA17_Chr4g0055421 61.086 221 75 2 1 221 1 210 2.03e-94 275
Msa0376430 MtrunA17_Chr8g0388331 59.276 221 79 2 1 221 1 210 6.51e-92 268
Msa0376430 MtrunA17_Chr8g0346911 65.366 205 62 1 18 222 39 234 1.28e-91 268
Msa0376430 MtrunA17_Chr4g0076551 55.856 222 88 2 1 222 16 227 3.36e-89 262
Msa0376430 MtrunA17_Chr3g0102821 59.420 207 75 1 16 222 29 226 2.13e-88 260
Msa0376430 MtrunA17_Chr5g0446931 56.422 218 86 1 5 222 18 226 6.02e-88 259
Msa0376430 MtrunA17_Chr1g0151621 59.545 220 77 2 2 218 36 246 1.68e-85 253
Msa0376430 MtrunA17_Chr2g0290771 60.541 185 73 0 38 222 7 191 3.31e-82 243
Msa0376430 MtrunA17_Chr2g0290781 48.889 225 102 3 4 224 18 233 3.34e-72 219
Msa0376430 MtrunA17_Chr3g0126811 87.302 126 6 2 1 126 1 116 9.05e-72 214
Msa0376430 MtrunA17_Chr8g0341941 56.098 205 81 1 17 221 60 255 2.40e-71 218
Msa0376430 MtrunA17_Chr2g0290751 51.980 202 86 2 3 203 19 210 4.92e-71 215
Msa0376430 MtrunA17_Chr2g0290761 50.746 201 90 1 3 203 19 210 1.40e-70 214
Msa0376430 MtrunA17_Chr3g0126801 99.029 103 1 0 121 223 4 106 1.15e-69 209
Msa0376430 MtrunA17_Chr4g0063121 45.902 183 79 1 41 223 7 169 7.34e-50 162
Msa0376430 MtrunA17_Chr5g0399921 54.167 120 43 2 1 120 1 108 8.86e-36 122
Msa0376430 MtrunA17_Chr8g0388311 60.000 80 32 0 143 222 1 80 1.36e-30 108
Msa0376430 MtrunA17_Chr8g0388321 42.308 156 51 4 1 147 46 171 5.75e-30 109
Msa0376430 MtrunA17_Chr5g0399931 58.333 72 30 0 143 214 1 72 4.67e-20 80.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0376430 AT5G24270.4 71.556 225 53 2 1 223 1 216 4.07e-112 320
Msa0376430 AT5G24270.1 71.556 225 53 2 1 223 1 216 4.07e-112 320
Msa0376430 AT5G24270.2 71.556 225 53 2 1 223 1 216 4.07e-112 320
Msa0376430 AT5G24270.5 77.419 186 42 0 38 223 6 191 1.46e-102 295
Msa0376430 AT4G17615.4 60.181 221 77 2 1 221 1 210 1.61e-91 268
Msa0376430 AT4G17615.1 60.181 221 77 2 1 221 1 210 1.61e-91 268
Msa0376430 AT4G17615.5 60.181 221 77 2 1 221 1 210 1.61e-91 268
Msa0376430 AT5G47100.1 59.729 221 78 2 1 221 1 210 4.65e-91 266
Msa0376430 AT1G64480.2 61.751 217 74 1 5 221 7 214 9.07e-91 266
Msa0376430 AT1G64480.3 61.751 217 74 1 5 221 7 214 9.07e-91 266
Msa0376430 AT1G64480.1 61.751 217 74 1 5 221 7 214 9.07e-91 266
Msa0376430 AT4G26570.1 59.242 211 77 1 12 222 25 226 1.02e-88 261
Msa0376430 AT4G33000.2 66.667 183 61 0 39 221 64 246 1.05e-86 257
Msa0376430 AT4G26570.2 58.140 215 77 2 12 222 25 230 1.44e-86 256
Msa0376430 AT4G33000.1 66.667 183 61 0 39 221 74 256 1.69e-86 256
Msa0376430 AT5G24270.3 74.233 163 42 0 61 223 7 169 3.47e-86 253
Msa0376430 AT5G55990.1 55.856 222 87 2 1 222 16 226 4.35e-86 254
Msa0376430 AT5G55990.2 55.856 222 87 2 1 222 16 226 4.35e-86 254
Msa0376430 AT4G17615.3 60.870 207 70 2 1 207 1 196 2.09e-84 251
Msa0376430 AT1G64480.4 61.500 200 68 1 5 204 7 197 7.03e-82 243
Msa0376430 AT4G16350.2 57.065 184 75 1 39 222 41 220 5.55e-73 221
Msa0376430 AT4G16350.1 57.065 184 75 1 39 222 41 220 5.55e-73 221
Msa0376430 AT4G17615.2 63.694 157 57 0 65 221 12 168 2.61e-71 215
Msa0376430 AT4G01420.1 47.664 214 100 2 1 214 1 202 2.71e-66 203
Msa0376430 AT5G47100.2 59.524 168 57 2 1 168 1 157 3.06e-65 200
Msa0376430 AT4G01420.2 47.549 204 95 2 1 204 1 192 2.06e-62 193
Msa0376430 AT4G26560.1 47.396 192 88 2 44 222 23 214 5.09e-61 190
Msa0376430 AT4G33000.4 65.116 129 45 0 39 167 64 192 1.01e-54 174
Msa0376430 AT4G33000.6 65.116 129 45 0 39 167 64 192 1.01e-54 174
Msa0376430 AT4G33000.5 65.625 128 44 0 39 166 64 191 1.42e-54 174
Msa0376430 AT4G33000.3 66.667 81 27 0 39 119 64 144 4.68e-31 112

Find 50 sgRNAs with CRISPR-Local

Find 186 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAGTCTTACTTATTGTTAT+TGG 0.178074 3_1:+76533931 None:intergenic
ACTCAGAGGGTTGACTAATT+AGG 0.204998 3_1:-76534140 Msa0376430:exon
TTCTGTTCTTGCAATAAAAC+TGG 0.228799 3_1:+76534170 None:intergenic
CGCAACGGCGTTATTGAGTT+TGG 0.301486 3_1:-76534948 Msa0376430:CDS
CTCAGAGGGTTGACTAATTA+GGG 0.347563 3_1:-76534139 Msa0376430:exon
GGTTACACTTACTTTAGATA+TGG 0.371596 3_1:+76534301 None:intergenic
AATTCCAGCTAGCACTCTTC+AGG 0.371966 3_1:-76535220 Msa0376430:CDS
TTGTATGATCTGAGGCAAAC+AGG 0.377411 3_1:-76534706 Msa0376430:CDS
GCAGTTAAAGGAAATGGTAT+TGG 0.379876 3_1:-76534584 Msa0376430:intron
GGTGAATTTGTTCGATCTCT+TGG 0.384084 3_1:-76534927 Msa0376430:CDS
GTCATGTTCTTTATCAAAGA+TGG 0.400140 3_1:+76534328 None:intergenic
AGCAATTCAATTATTGAAGA+TGG 0.401125 3_1:-76535361 Msa0376430:CDS
TTGTCTTCTAAAGCCGCATT+TGG 0.412464 3_1:+76534894 None:intergenic
TTATTTGCAGTTAAAGGAAA+TGG 0.412783 3_1:-76534590 Msa0376430:intron
GATAGAGGCTATTGTGGATA+AGG 0.439938 3_1:-76534521 Msa0376430:intron
TATCCATCTTCATCATTAAC+CGG 0.453433 3_1:-76535526 Msa0376430:intron
GATTAAAGTGTAGTCACTAT+TGG 0.470500 3_1:+76534111 None:intergenic
CATTCCTGAAGAGTGCTAGC+TGG 0.479014 3_1:+76535216 None:intergenic
TAAACTCTTAAGTTGAAAGA+TGG 0.501693 3_1:+76533996 None:intergenic
GATGCTGATACAAAAGATGA+TGG 0.508848 3_1:-76534394 Msa0376430:CDS
GCTTTCAGATGATATGATAG+AGG 0.531839 3_1:-76534536 Msa0376430:CDS
GAGAGACGTTATCAAAGAGA+AGG 0.533906 3_1:-76534042 Msa0376430:three_prime_UTR
ACACTTACTTTAGATATGGA+AGG 0.535196 3_1:+76534305 None:intergenic
AATAAAACTGGGAAATGCTA+AGG 0.541646 3_1:+76534182 None:intergenic
GGACCATGTAATGTAAAACT+TGG 0.548685 3_1:-76534019 Msa0376430:three_prime_UTR
TTACCGGTTAATGATGAAGA+TGG 0.551660 3_1:+76535523 None:intergenic
AGAGACGTTATCAAAGAGAA+GGG 0.555606 3_1:-76534041 Msa0376430:three_prime_UTR
TACTTATTGTTATTGGAACA+AGG 0.556750 3_1:+76533938 None:intergenic
TAAAACACCACCAGGCTATG+AGG 0.560691 3_1:-76535584 Msa0376430:CDS
CTGATACAAAAGATGATGGA+AGG 0.564303 3_1:-76534390 Msa0376430:CDS
CACTTACTTTAGATATGGAA+GGG 0.565574 3_1:+76534306 None:intergenic
TGATATGATAGAGGCTATTG+TGG 0.568591 3_1:-76534527 Msa0376430:CDS
ACTGTGGGATCCTCATAGCC+TGG 0.572736 3_1:+76535574 None:intergenic
TCTGTTCTTGCAATAAAACT+GGG 0.575355 3_1:+76534171 None:intergenic
TGAAGATGGTCTTATTCACA+AGG 0.588994 3_1:-76535347 Msa0376430:intron
GTTTCAGAAGCAAGAACTGT+GGG 0.589683 3_1:+76535559 None:intergenic
AACAGAAGTTGAAGACTCAG+AGG 0.590695 3_1:-76534154 Msa0376430:CDS
TTATTTGATGTTAAGCGCAA+CGG 0.591522 3_1:-76534963 Msa0376430:CDS
GAAGGATTGATCAAGATGAG+TGG 0.600746 3_1:-76534372 Msa0376430:CDS
TGTATGATCTGAGGCAAACA+GGG 0.613793 3_1:-76534705 Msa0376430:CDS
AGTTACTGTGAGTGAAGTAG+AGG 0.623440 3_1:-76535410 Msa0376430:CDS
ACAGAAGTTGAAGACTCAGA+GGG 0.628937 3_1:-76534153 Msa0376430:CDS
AGGGTACATTGAAAGAGAAG+AGG 0.631645 3_1:-76534686 Msa0376430:intron
AAGAATGTTAAAACACCACC+AGG 0.637444 3_1:-76535592 Msa0376430:CDS
TAAGACTATTGTCTATTGTG+TGG 0.662864 3_1:-76533917 None:intergenic
GAGACGTTATCAAAGAGAAG+GGG 0.663350 3_1:-76534040 Msa0376430:three_prime_UTR
GTGGGATCCTCATAGCCTGG+TGG 0.686147 3_1:+76535577 None:intergenic
TGTTTCAGAAGCAAGAACTG+TGG 0.689885 3_1:+76535558 None:intergenic
GATGAAGATGGATACTCACA+AGG 0.700807 3_1:+76535535 None:intergenic
AGAGGGTTGACTAATTAGGG+AGG 0.712501 3_1:-76534136 Msa0376430:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATATATATATATATAT+AGG - chr3_1:76535470-76535489 Msa0376430:intron 0.0%
!! ATATATATATATATATATAT+AGG - chr3_1:76535470-76535489 Msa0376430:intron 0.0%
!! ATTTCATAAATCTATTTATT+AGG + chr3_1:76534049-76534068 None:intergenic 10.0%
!!! ATTTGTTTTAATCAATTTTA+AGG + chr3_1:76534081-76534100 None:intergenic 10.0%
!! CTATATTAATATTAAACTTT+AGG - chr3_1:76534889-76534908 Msa0376430:CDS 10.0%
!! ATTTCATAAATCTATTTATT+AGG + chr3_1:76534049-76534068 None:intergenic 10.0%
!!! ATTTGTTTTAATCAATTTTA+AGG + chr3_1:76534081-76534100 None:intergenic 10.0%
!! CTATATTAATATTAAACTTT+AGG - chr3_1:76534889-76534908 Msa0376430:CDS 10.0%
!! ACAAAAATATTATTACTTCT+AGG - chr3_1:76534290-76534309 Msa0376430:intron 15.0%
!! TTATGGTTATTTATTGAATT+GGG - chr3_1:76534779-76534798 Msa0376430:intron 15.0%
!! ACAAAAATATTATTACTTCT+AGG - chr3_1:76534290-76534309 Msa0376430:intron 15.0%
!! TTATGGTTATTTATTGAATT+GGG - chr3_1:76534779-76534798 Msa0376430:intron 15.0%
!! TCATAAATCTATTTATTAGG+TGG + chr3_1:76534046-76534065 None:intergenic 20.0%
!! AATAAGTCAAAAATCTATAG+AGG + chr3_1:76534558-76534577 None:intergenic 20.0%
!! TTATAACTCTTGCTTAATAT+AGG + chr3_1:76534755-76534774 None:intergenic 20.0%
!! GTTATGGTTATTTATTGAAT+TGG - chr3_1:76534778-76534797 Msa0376430:intron 20.0%
!! TTTAATCTTATGTTAGAACT+TGG - chr3_1:76534914-76534933 Msa0376430:CDS 20.0%
!! TTTAAATGTAACAATCGTAA+TGG + chr3_1:76535060-76535079 None:intergenic 20.0%
!!! AAAAATGGATTTTCATTAAG+AGG + chr3_1:76535259-76535278 None:intergenic 20.0%
!!! AATCCATTTTTTTTATTGAC+TGG - chr3_1:76535268-76535287 Msa0376430:intron 20.0%
!! ATTCCAGTCAATAAAAAAAA+TGG + chr3_1:76535274-76535293 None:intergenic 20.0%
!!! ATAGTCTTACTTATTGTTAT+TGG + chr3_1:76535608-76535627 None:intergenic 20.0%
!! TCATAAATCTATTTATTAGG+TGG + chr3_1:76534046-76534065 None:intergenic 20.0%
!! AATAAGTCAAAAATCTATAG+AGG + chr3_1:76534558-76534577 None:intergenic 20.0%
!! TTATAACTCTTGCTTAATAT+AGG + chr3_1:76534755-76534774 None:intergenic 20.0%
!! GTTATGGTTATTTATTGAAT+TGG - chr3_1:76534778-76534797 Msa0376430:intron 20.0%
!! TTTAATCTTATGTTAGAACT+TGG - chr3_1:76534914-76534933 Msa0376430:CDS 20.0%
!! TTTAAATGTAACAATCGTAA+TGG + chr3_1:76535060-76535079 None:intergenic 20.0%
!!! AAAAATGGATTTTCATTAAG+AGG + chr3_1:76535259-76535278 None:intergenic 20.0%
!!! AATCCATTTTTTTTATTGAC+TGG - chr3_1:76535268-76535287 Msa0376430:intron 20.0%
!! ATTCCAGTCAATAAAAAAAA+TGG + chr3_1:76535274-76535293 None:intergenic 20.0%
!!! ATAGTCTTACTTATTGTTAT+TGG + chr3_1:76535608-76535627 None:intergenic 20.0%
! AGCAATTCAATTATTGAAGA+TGG - chr3_1:76534175-76534194 Msa0376430:CDS 25.0%
! AGATAAAATGTCCTTAATTC+AGG - chr3_1:76534252-76534271 Msa0376430:intron 25.0%
! TATAACTCATCCATACTTTA+TGG - chr3_1:76534377-76534396 Msa0376430:CDS 25.0%
! GCAAGAGTTATAATATGTTA+TGG - chr3_1:76534762-76534781 Msa0376430:intron 25.0%
! TTATTTGCAGTTAAAGGAAA+TGG - chr3_1:76534946-76534965 Msa0376430:CDS 25.0%
!!! TAAACTCTTAAGTTGAAAGA+TGG + chr3_1:76535543-76535562 None:intergenic 25.0%
!! TACTTATTGTTATTGGAACA+AGG + chr3_1:76535601-76535620 None:intergenic 25.0%
! AGCAATTCAATTATTGAAGA+TGG - chr3_1:76534175-76534194 Msa0376430:CDS 25.0%
! AGATAAAATGTCCTTAATTC+AGG - chr3_1:76534252-76534271 Msa0376430:intron 25.0%
! TATAACTCATCCATACTTTA+TGG - chr3_1:76534377-76534396 Msa0376430:CDS 25.0%
! GCAAGAGTTATAATATGTTA+TGG - chr3_1:76534762-76534781 Msa0376430:intron 25.0%
! TTATTTGCAGTTAAAGGAAA+TGG - chr3_1:76534946-76534965 Msa0376430:CDS 25.0%
!!! TAAACTCTTAAGTTGAAAGA+TGG + chr3_1:76535543-76535562 None:intergenic 25.0%
!! TACTTATTGTTATTGGAACA+AGG + chr3_1:76535601-76535620 None:intergenic 25.0%
TATCCATCTTCATCATTAAC+CGG - chr3_1:76534010-76534029 Msa0376430:three_prime_UTR 30.0%
TAAAATGTCCTTAATTCAGG+TGG - chr3_1:76534255-76534274 Msa0376430:intron 30.0%
CAAGTTTAGACCATAAAGTA+TGG + chr3_1:76534390-76534409 None:intergenic 30.0%
GCATTAGAATGAAATAATGC+AGG + chr3_1:76534517-76534536 None:intergenic 30.0%
TTATTTGATGTTAAGCGCAA+CGG - chr3_1:76534573-76534592 Msa0376430:CDS 30.0%
ATAGGAAACTCCAAAACTTA+GGG + chr3_1:76534737-76534756 None:intergenic 30.0%
TATAGGAAACTCCAAAACTT+AGG + chr3_1:76534738-76534757 None:intergenic 30.0%
!!! TGATATTTGCAGTTGCTTTT+AGG - chr3_1:76534807-76534826 Msa0376430:intron 30.0%
TATGTTAGAACTTGGAATCA+TGG - chr3_1:76534922-76534941 Msa0376430:CDS 30.0%
CATGGTTTATTTGCAGTTAA+AGG - chr3_1:76534940-76534959 Msa0376430:CDS 30.0%
GTCATGTTCTTTATCAAAGA+TGG + chr3_1:76535211-76535230 None:intergenic 30.0%
CACTTACTTTAGATATGGAA+GGG + chr3_1:76535233-76535252 None:intergenic 30.0%
ACACTTACTTTAGATATGGA+AGG + chr3_1:76535234-76535253 None:intergenic 30.0%
GGTTACACTTACTTTAGATA+TGG + chr3_1:76535238-76535257 None:intergenic 30.0%
AATAAAACTGGGAAATGCTA+AGG + chr3_1:76535357-76535376 None:intergenic 30.0%
TCTGTTCTTGCAATAAAACT+GGG + chr3_1:76535368-76535387 None:intergenic 30.0%
TTCTGTTCTTGCAATAAAAC+TGG + chr3_1:76535369-76535388 None:intergenic 30.0%
GATTAAAGTGTAGTCACTAT+TGG + chr3_1:76535428-76535447 None:intergenic 30.0%
TATCCATCTTCATCATTAAC+CGG - chr3_1:76534010-76534029 Msa0376430:three_prime_UTR 30.0%
TAAAATGTCCTTAATTCAGG+TGG - chr3_1:76534255-76534274 Msa0376430:intron 30.0%
CAAGTTTAGACCATAAAGTA+TGG + chr3_1:76534390-76534409 None:intergenic 30.0%
GCATTAGAATGAAATAATGC+AGG + chr3_1:76534517-76534536 None:intergenic 30.0%
TTATTTGATGTTAAGCGCAA+CGG - chr3_1:76534573-76534592 Msa0376430:CDS 30.0%
ATAGGAAACTCCAAAACTTA+GGG + chr3_1:76534737-76534756 None:intergenic 30.0%
TATAGGAAACTCCAAAACTT+AGG + chr3_1:76534738-76534757 None:intergenic 30.0%
!!! TGATATTTGCAGTTGCTTTT+AGG - chr3_1:76534807-76534826 Msa0376430:intron 30.0%
TATGTTAGAACTTGGAATCA+TGG - chr3_1:76534922-76534941 Msa0376430:CDS 30.0%
CATGGTTTATTTGCAGTTAA+AGG - chr3_1:76534940-76534959 Msa0376430:CDS 30.0%
GTCATGTTCTTTATCAAAGA+TGG + chr3_1:76535211-76535230 None:intergenic 30.0%
CACTTACTTTAGATATGGAA+GGG + chr3_1:76535233-76535252 None:intergenic 30.0%
ACACTTACTTTAGATATGGA+AGG + chr3_1:76535234-76535253 None:intergenic 30.0%
GGTTACACTTACTTTAGATA+TGG + chr3_1:76535238-76535257 None:intergenic 30.0%
AATAAAACTGGGAAATGCTA+AGG + chr3_1:76535357-76535376 None:intergenic 30.0%
TCTGTTCTTGCAATAAAACT+GGG + chr3_1:76535368-76535387 None:intergenic 30.0%
TTCTGTTCTTGCAATAAAAC+TGG + chr3_1:76535369-76535388 None:intergenic 30.0%
GATTAAAGTGTAGTCACTAT+TGG + chr3_1:76535428-76535447 None:intergenic 30.0%
AAGAATGTTAAAACACCACC+AGG - chr3_1:76533944-76533963 Msa0376430:three_prime_UTR 35.0%
! TTACCGGTTAATGATGAAGA+TGG + chr3_1:76534016-76534035 None:intergenic 35.0%
ATTAGGTGGAACAGAATTAC+CGG + chr3_1:76534032-76534051 None:intergenic 35.0%
!! TGAAGATGGTCTTATTCACA+AGG - chr3_1:76534189-76534208 Msa0376430:CDS 35.0%
AGAAAAATCTGTTTGCAGAC+AGG - chr3_1:76534349-76534368 Msa0376430:CDS 35.0%
GAAAAATCTGTTTGCAGACA+GGG - chr3_1:76534350-76534369 Msa0376430:CDS 35.0%
!!! AAGCTCTAGGATCTTTTGAT+AGG - chr3_1:76534426-76534445 Msa0376430:intron 35.0%
GAGGAGAAACAATTGTGAAA+AGG + chr3_1:76534539-76534558 None:intergenic 35.0%
! TGGTGTTTTTCATCCAAATG+CGG - chr3_1:76534629-76534648 Msa0376430:intron 35.0%
! TTTGTCCTTTCCCTAAGTTT+TGG - chr3_1:76534724-76534743 Msa0376430:intron 35.0%
AAACTCCAAAACTTAGGGAA+AGG + chr3_1:76534732-76534751 None:intergenic 35.0%
!!! CTTTTAGGTTGTATGATCTG+AGG - chr3_1:76534822-76534841 Msa0376430:intron 35.0%
GCAGTTAAAGGAAATGGTAT+TGG - chr3_1:76534952-76534971 Msa0376430:CDS 35.0%
GCTTTCAGATGATATGATAG+AGG - chr3_1:76535000-76535019 Msa0376430:intron 35.0%
TGATATGATAGAGGCTATTG+TGG - chr3_1:76535009-76535028 Msa0376430:intron 35.0%
ATGTAACAATCGTAATGGCA+AGG + chr3_1:76535055-76535074 None:intergenic 35.0%
GATGCTGATACAAAAGATGA+TGG - chr3_1:76535142-76535161 Msa0376430:intron 35.0%
!! CTGATACAAAAGATGATGGA+AGG - chr3_1:76535146-76535165 Msa0376430:intron 35.0%
AATATCCCTACAAAATGTGG+AGG + chr3_1:76535333-76535352 None:intergenic 35.0%
GGTAATATCCCTACAAAATG+TGG + chr3_1:76535336-76535355 None:intergenic 35.0%
AGAGACGTTATCAAAGAGAA+GGG - chr3_1:76535495-76535514 Msa0376430:intron 35.0%
GGACCATGTAATGTAAAACT+TGG - chr3_1:76535517-76535536 Msa0376430:intron 35.0%
! TGGCCAAGTTTTACATTACA+TGG + chr3_1:76535523-76535542 None:intergenic 35.0%
AAGAATGTTAAAACACCACC+AGG - chr3_1:76533944-76533963 Msa0376430:three_prime_UTR 35.0%
! TTACCGGTTAATGATGAAGA+TGG + chr3_1:76534016-76534035 None:intergenic 35.0%
ATTAGGTGGAACAGAATTAC+CGG + chr3_1:76534032-76534051 None:intergenic 35.0%
!! TGAAGATGGTCTTATTCACA+AGG - chr3_1:76534189-76534208 Msa0376430:CDS 35.0%
AGAAAAATCTGTTTGCAGAC+AGG - chr3_1:76534349-76534368 Msa0376430:CDS 35.0%
GAAAAATCTGTTTGCAGACA+GGG - chr3_1:76534350-76534369 Msa0376430:CDS 35.0%
!!! AAGCTCTAGGATCTTTTGAT+AGG - chr3_1:76534426-76534445 Msa0376430:intron 35.0%
GAGGAGAAACAATTGTGAAA+AGG + chr3_1:76534539-76534558 None:intergenic 35.0%
! TGGTGTTTTTCATCCAAATG+CGG - chr3_1:76534629-76534648 Msa0376430:intron 35.0%
! TTTGTCCTTTCCCTAAGTTT+TGG - chr3_1:76534724-76534743 Msa0376430:intron 35.0%
AAACTCCAAAACTTAGGGAA+AGG + chr3_1:76534732-76534751 None:intergenic 35.0%
!!! CTTTTAGGTTGTATGATCTG+AGG - chr3_1:76534822-76534841 Msa0376430:intron 35.0%
GCAGTTAAAGGAAATGGTAT+TGG - chr3_1:76534952-76534971 Msa0376430:CDS 35.0%
GCTTTCAGATGATATGATAG+AGG - chr3_1:76535000-76535019 Msa0376430:intron 35.0%
TGATATGATAGAGGCTATTG+TGG - chr3_1:76535009-76535028 Msa0376430:intron 35.0%
ATGTAACAATCGTAATGGCA+AGG + chr3_1:76535055-76535074 None:intergenic 35.0%
GATGCTGATACAAAAGATGA+TGG - chr3_1:76535142-76535161 Msa0376430:intron 35.0%
!! CTGATACAAAAGATGATGGA+AGG - chr3_1:76535146-76535165 Msa0376430:intron 35.0%
AATATCCCTACAAAATGTGG+AGG + chr3_1:76535333-76535352 None:intergenic 35.0%
GGTAATATCCCTACAAAATG+TGG + chr3_1:76535336-76535355 None:intergenic 35.0%
AGAGACGTTATCAAAGAGAA+GGG - chr3_1:76535495-76535514 Msa0376430:intron 35.0%
GGACCATGTAATGTAAAACT+TGG - chr3_1:76535517-76535536 Msa0376430:intron 35.0%
! TGGCCAAGTTTTACATTACA+TGG + chr3_1:76535523-76535542 None:intergenic 35.0%
GTTTCAGAAGCAAGAACTGT+GGG + chr3_1:76533980-76533999 None:intergenic 40.0%
TGTTTCAGAAGCAAGAACTG+TGG + chr3_1:76533981-76534000 None:intergenic 40.0%
GATGAAGATGGATACTCACA+AGG + chr3_1:76534004-76534023 None:intergenic 40.0%
AGTTACTGTGAGTGAAGTAG+AGG - chr3_1:76534126-76534145 Msa0376430:three_prime_UTR 40.0%
! GAGATTAGCCACCTGAATTA+AGG + chr3_1:76534266-76534285 None:intergenic 40.0%
GATCTTCTTGTTCAAGCTCT+AGG - chr3_1:76534413-76534432 Msa0376430:intron 40.0%
! GGTGAATTTGTTCGATCTCT+TGG - chr3_1:76534609-76534628 Msa0376430:intron 40.0%
!! TTGTCTTCTAAAGCCGCATT+TGG + chr3_1:76534645-76534664 None:intergenic 40.0%
! TTGTATGATCTGAGGCAAAC+AGG - chr3_1:76534830-76534849 Msa0376430:intron 40.0%
! TGTATGATCTGAGGCAAACA+GGG - chr3_1:76534831-76534850 Msa0376430:intron 40.0%
AGGGTACATTGAAAGAGAAG+AGG - chr3_1:76534850-76534869 Msa0376430:intron 40.0%
GATAGAGGCTATTGTGGATA+AGG - chr3_1:76535015-76535034 Msa0376430:intron 40.0%
GAAGGATTGATCAAGATGAG+TGG - chr3_1:76535164-76535183 Msa0376430:intron 40.0%
AACAGAAGTTGAAGACTCAG+AGG - chr3_1:76535382-76535401 Msa0376430:CDS 40.0%
ACAGAAGTTGAAGACTCAGA+GGG - chr3_1:76535383-76535402 Msa0376430:CDS 40.0%
ACTCAGAGGGTTGACTAATT+AGG - chr3_1:76535396-76535415 Msa0376430:CDS 40.0%
CTCAGAGGGTTGACTAATTA+GGG - chr3_1:76535397-76535416 Msa0376430:CDS 40.0%
GAGAGACGTTATCAAAGAGA+AGG - chr3_1:76535494-76535513 Msa0376430:intron 40.0%
GAGACGTTATCAAAGAGAAG+GGG - chr3_1:76535496-76535515 Msa0376430:intron 40.0%
GTTTCAGAAGCAAGAACTGT+GGG + chr3_1:76533980-76533999 None:intergenic 40.0%
TGTTTCAGAAGCAAGAACTG+TGG + chr3_1:76533981-76534000 None:intergenic 40.0%
GATGAAGATGGATACTCACA+AGG + chr3_1:76534004-76534023 None:intergenic 40.0%
AGTTACTGTGAGTGAAGTAG+AGG - chr3_1:76534126-76534145 Msa0376430:three_prime_UTR 40.0%
! GAGATTAGCCACCTGAATTA+AGG + chr3_1:76534266-76534285 None:intergenic 40.0%
GATCTTCTTGTTCAAGCTCT+AGG - chr3_1:76534413-76534432 Msa0376430:intron 40.0%
! GGTGAATTTGTTCGATCTCT+TGG - chr3_1:76534609-76534628 Msa0376430:intron 40.0%
!! TTGTCTTCTAAAGCCGCATT+TGG + chr3_1:76534645-76534664 None:intergenic 40.0%
! TTGTATGATCTGAGGCAAAC+AGG - chr3_1:76534830-76534849 Msa0376430:intron 40.0%
! TGTATGATCTGAGGCAAACA+GGG - chr3_1:76534831-76534850 Msa0376430:intron 40.0%
AGGGTACATTGAAAGAGAAG+AGG - chr3_1:76534850-76534869 Msa0376430:intron 40.0%
GATAGAGGCTATTGTGGATA+AGG - chr3_1:76535015-76535034 Msa0376430:intron 40.0%
GAAGGATTGATCAAGATGAG+TGG - chr3_1:76535164-76535183 Msa0376430:intron 40.0%
AACAGAAGTTGAAGACTCAG+AGG - chr3_1:76535382-76535401 Msa0376430:CDS 40.0%
ACAGAAGTTGAAGACTCAGA+GGG - chr3_1:76535383-76535402 Msa0376430:CDS 40.0%
ACTCAGAGGGTTGACTAATT+AGG - chr3_1:76535396-76535415 Msa0376430:CDS 40.0%
CTCAGAGGGTTGACTAATTA+GGG - chr3_1:76535397-76535416 Msa0376430:CDS 40.0%
GAGAGACGTTATCAAAGAGA+AGG - chr3_1:76535494-76535513 Msa0376430:intron 40.0%
GAGACGTTATCAAAGAGAAG+GGG - chr3_1:76535496-76535515 Msa0376430:intron 40.0%
TAAAACACCACCAGGCTATG+AGG - chr3_1:76533952-76533971 Msa0376430:three_prime_UTR 45.0%
AATTCCAGCTAGCACTCTTC+AGG - chr3_1:76534316-76534335 Msa0376430:CDS 45.0%
! ATGCCTCCTCCACATTTTGT+AGG - chr3_1:76535324-76535343 Msa0376430:intron 45.0%
! TGCCTCCTCCACATTTTGTA+GGG - chr3_1:76535325-76535344 Msa0376430:intron 45.0%
ATCCCTACAAAATGTGGAGG+AGG + chr3_1:76535330-76535349 None:intergenic 45.0%
AGAGGGTTGACTAATTAGGG+AGG - chr3_1:76535400-76535419 Msa0376430:CDS 45.0%
TAAAACACCACCAGGCTATG+AGG - chr3_1:76533952-76533971 Msa0376430:three_prime_UTR 45.0%
AATTCCAGCTAGCACTCTTC+AGG - chr3_1:76534316-76534335 Msa0376430:CDS 45.0%
! ATGCCTCCTCCACATTTTGT+AGG - chr3_1:76535324-76535343 Msa0376430:intron 45.0%
! TGCCTCCTCCACATTTTGTA+GGG - chr3_1:76535325-76535344 Msa0376430:intron 45.0%
ATCCCTACAAAATGTGGAGG+AGG + chr3_1:76535330-76535349 None:intergenic 45.0%
AGAGGGTTGACTAATTAGGG+AGG - chr3_1:76535400-76535419 Msa0376430:CDS 45.0%
!! CATTCCTGAAGAGTGCTAGC+TGG + chr3_1:76534323-76534342 None:intergenic 50.0%
CGCAACGGCGTTATTGAGTT+TGG - chr3_1:76534588-76534607 Msa0376430:intron 50.0%
!! CATTCCTGAAGAGTGCTAGC+TGG + chr3_1:76534323-76534342 None:intergenic 50.0%
CGCAACGGCGTTATTGAGTT+TGG - chr3_1:76534588-76534607 Msa0376430:intron 50.0%
ACTGTGGGATCCTCATAGCC+TGG + chr3_1:76533965-76533984 None:intergenic 55.0%
ACTGTGGGATCCTCATAGCC+TGG + chr3_1:76533965-76533984 None:intergenic 55.0%
GTGGGATCCTCATAGCCTGG+TGG + chr3_1:76533962-76533981 None:intergenic 60.0%
GTGGGATCCTCATAGCCTGG+TGG + chr3_1:76533962-76533981 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 76533920 76535638 76533920 ID=Msa0376430;Name=Msa0376430
chr3_1 mRNA 76533920 76535638 76533920 ID=Msa0376430-mRNA-1;Parent=Msa0376430;Name=Msa0376430-mRNA-1;_AED=0.24;_eAED=0.26;_QI=0|0.85|0.87|1|1|1|8|229|224
chr3_1 exon 76533920 76534212 76533920 ID=Msa0376430-mRNA-1:exon:18207;Parent=Msa0376430-mRNA-1
chr3_1 exon 76534313 76534425 76534313 ID=Msa0376430-mRNA-1:exon:18206;Parent=Msa0376430-mRNA-1
chr3_1 exon 76534522 76534602 76534522 ID=Msa0376430-mRNA-1:exon:18205;Parent=Msa0376430-mRNA-1
chr3_1 exon 76534687 76534739 76534687 ID=Msa0376430-mRNA-1:exon:18204;Parent=Msa0376430-mRNA-1
chr3_1 exon 76534886 76534994 76534886 ID=Msa0376430-mRNA-1:exon:18203;Parent=Msa0376430-mRNA-1
chr3_1 exon 76535187 76535246 76535187 ID=Msa0376430-mRNA-1:exon:18202;Parent=Msa0376430-mRNA-1
chr3_1 exon 76535348 76535430 76535348 ID=Msa0376430-mRNA-1:exon:18201;Parent=Msa0376430-mRNA-1
chr3_1 exon 76535527 76535638 76535527 ID=Msa0376430-mRNA-1:exon:18200;Parent=Msa0376430-mRNA-1
chr3_1 CDS 76535527 76535638 76535527 ID=Msa0376430-mRNA-1:cds;Parent=Msa0376430-mRNA-1
chr3_1 CDS 76535348 76535430 76535348 ID=Msa0376430-mRNA-1:cds;Parent=Msa0376430-mRNA-1
chr3_1 CDS 76535187 76535246 76535187 ID=Msa0376430-mRNA-1:cds;Parent=Msa0376430-mRNA-1
chr3_1 CDS 76534886 76534994 76534886 ID=Msa0376430-mRNA-1:cds;Parent=Msa0376430-mRNA-1
chr3_1 CDS 76534687 76534739 76534687 ID=Msa0376430-mRNA-1:cds;Parent=Msa0376430-mRNA-1
chr3_1 CDS 76534522 76534602 76534522 ID=Msa0376430-mRNA-1:cds;Parent=Msa0376430-mRNA-1
chr3_1 CDS 76534313 76534425 76534313 ID=Msa0376430-mRNA-1:cds;Parent=Msa0376430-mRNA-1
chr3_1 CDS 76534149 76534212 76534149 ID=Msa0376430-mRNA-1:cds;Parent=Msa0376430-mRNA-1
chr3_1 three_prime_UTR 76533920 76534148 76533920 ID=Msa0376430-mRNA-1:three_prime_utr;Parent=Msa0376430-mRNA-1
Gene Sequence

>Msa0376430

ATGGGCTGCTTTTGTTCAACTTCAAAGAATGTTAAAACACCACCAGGCTATGAGGATCCCACAGTTCTTGCTTCTGAAACACCTTGTGAGTATCCATCTTCATCATTAACCGTTACTGTGAGTGAAGTAGAGGCGTTATATGAACTCTTTTTGAAGTTAAGCAATTCAATTATTGAAGATGGTCTTATTCACAAGGAAGAATTCCAGCTAGCACTCTTCAGGAATGAAAATGAGAAAAATCTGTTTGCAGACAGGATTTTTGACTTATTTGATGTTAAGCGCAACGGCGTTATTGAGTTTGGTGAATTTGTTCGATCTCTTGGTGTTTTTCATCCAAATGCGGCTTTAGAAGACAAAATTGCATTTGCTTTTAGGTTGTATGATCTGAGGCAAACAGGGTACATTGAAAGAGAAGAGTTAAAGGAAATGGTATTGGCACTTCTACATGAATCAGATCTTGTGCTTTCAGATGATATGATAGAGGCTATTGTGGATAAGACTTTTAAAGATGCTGATACAAAAGATGATGGAAGGATTGATCAAGATGAGTGGAAAGCTTTTGTCTCTCAACATCCATCTTTGATAAAGAACATGACCCTTCCATATCTAAAGGATATTACCTTAGCATTTCCCAGTTTTATTGCAAGAACAGAAGTTGAAGACTCAGAGGGTTGA

Protein sequence

>Msa0376430

MGCFCSTSKNVKTPPGYEDPTVLASETPCEYPSSSLTVTVSEVEALYELFLKLSNSIIEDGLIHKEEFQLALFRNENEKNLFADRIFDLFDVKRNGVIEFGEFVRSLGVFHPNAALEDKIAFAFRLYDLRQTGYIEREELKEMVLALLHESDLVLSDDMIEAIVDKTFKDADTKDDGRIDQDEWKAFVSQHPSLIKNMTLPYLKDITLAFPSFIARTEVEDSEG*