Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0516250 | XP_003602244.1 | 94.619 | 223 | 2 | 2 | 1 | 223 | 1 | 213 | 2.41e-147 | 419 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0516250 | sp|O81223|CNBL4_ARATH | 71.556 | 225 | 53 | 2 | 1 | 223 | 1 | 216 | 4.00e-111 | 320 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0516250 | G7J6W3 | 94.619 | 223 | 2 | 2 | 1 | 223 | 1 | 213 | 1.15e-147 | 419 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0032710 | Msa0516250 | 0.809501 | 1.834207e-50 | -8.615850e-47 |
| Msa0198990 | Msa0516250 | 0.810838 | 9.446462e-51 | -8.615850e-47 |
| Msa0376430 | Msa0516250 | 0.991018 | 1.779708e-185 | -8.615850e-47 |
| Msa0424870 | Msa0516250 | 0.851553 | 8.234318e-61 | -8.615850e-47 |
| Msa0241750 | Msa0516250 | 0.800127 | 1.667281e-48 | -8.615850e-47 |
| Msa0288620 | Msa0516250 | 0.801815 | 7.533874e-49 | -8.615850e-47 |
| Msa0516250 | Msa0610690 | 0.802560 | 5.295676e-49 | -8.615850e-47 |
| Msa0516250 | Msa0657720 | 0.802335 | 5.890495e-49 | -8.615850e-47 |
| Msa0516250 | Msa0702790 | 0.801990 | 6.935331e-49 | -8.615850e-47 |
| Msa0516250 | Msa0797580 | 0.802910 | 4.482384e-49 | -8.615850e-47 |
| Msa0516250 | Msa0800180 | 0.807797 | 4.241834e-50 | -8.615850e-47 |
| Msa0516250 | Msa0831740 | 0.800606 | 1.331824e-48 | -8.615850e-47 |
| Msa0516250 | Msa0940910 | 0.821140 | 4.730447e-53 | -8.615850e-47 |
| Msa0516250 | Msa1082410 | 0.808772 | 2.628195e-50 | -8.615850e-47 |
| Msa0516250 | Msa1268390 | 0.811221 | 7.801066e-51 | -8.615850e-47 |
| Msa0516250 | Msa1268420 | 0.812246 | 4.669867e-51 | -8.615850e-47 |
| Msa0516250 | Msa1323070 | 0.832628 | 8.479765e-56 | -8.615850e-47 |
| Msa0516250 | Msa1439250 | 0.837636 | 4.624786e-57 | -8.615850e-47 |
| Msa0516250 | Msa1439270 | 0.804268 | 2.343249e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0516250 | MtrunA17_Chr4g0055421 | 61.086 | 221 | 75 | 2 | 1 | 221 | 1 | 210 | 2.03e-94 | 275 |
| Msa0516250 | MtrunA17_Chr8g0388331 | 59.276 | 221 | 79 | 2 | 1 | 221 | 1 | 210 | 6.51e-92 | 268 |
| Msa0516250 | MtrunA17_Chr8g0346911 | 65.366 | 205 | 62 | 1 | 18 | 222 | 39 | 234 | 1.28e-91 | 268 |
| Msa0516250 | MtrunA17_Chr4g0076551 | 55.856 | 222 | 88 | 2 | 1 | 222 | 16 | 227 | 3.36e-89 | 262 |
| Msa0516250 | MtrunA17_Chr3g0102821 | 59.420 | 207 | 75 | 1 | 16 | 222 | 29 | 226 | 2.13e-88 | 260 |
| Msa0516250 | MtrunA17_Chr5g0446931 | 56.422 | 218 | 86 | 1 | 5 | 222 | 18 | 226 | 6.02e-88 | 259 |
| Msa0516250 | MtrunA17_Chr1g0151621 | 59.545 | 220 | 77 | 2 | 2 | 218 | 36 | 246 | 1.68e-85 | 253 |
| Msa0516250 | MtrunA17_Chr2g0290771 | 60.541 | 185 | 73 | 0 | 38 | 222 | 7 | 191 | 3.31e-82 | 243 |
| Msa0516250 | MtrunA17_Chr2g0290781 | 48.889 | 225 | 102 | 3 | 4 | 224 | 18 | 233 | 3.34e-72 | 219 |
| Msa0516250 | MtrunA17_Chr3g0126811 | 87.302 | 126 | 6 | 2 | 1 | 126 | 1 | 116 | 9.05e-72 | 214 |
| Msa0516250 | MtrunA17_Chr8g0341941 | 56.098 | 205 | 81 | 1 | 17 | 221 | 60 | 255 | 2.40e-71 | 218 |
| Msa0516250 | MtrunA17_Chr2g0290751 | 51.980 | 202 | 86 | 2 | 3 | 203 | 19 | 210 | 4.92e-71 | 215 |
| Msa0516250 | MtrunA17_Chr2g0290761 | 50.746 | 201 | 90 | 1 | 3 | 203 | 19 | 210 | 1.40e-70 | 214 |
| Msa0516250 | MtrunA17_Chr3g0126801 | 99.029 | 103 | 1 | 0 | 121 | 223 | 4 | 106 | 1.15e-69 | 209 |
| Msa0516250 | MtrunA17_Chr4g0063121 | 45.902 | 183 | 79 | 1 | 41 | 223 | 7 | 169 | 7.34e-50 | 162 |
| Msa0516250 | MtrunA17_Chr5g0399921 | 54.167 | 120 | 43 | 2 | 1 | 120 | 1 | 108 | 8.86e-36 | 122 |
| Msa0516250 | MtrunA17_Chr8g0388311 | 60.000 | 80 | 32 | 0 | 143 | 222 | 1 | 80 | 1.36e-30 | 108 |
| Msa0516250 | MtrunA17_Chr8g0388321 | 42.308 | 156 | 51 | 4 | 1 | 147 | 46 | 171 | 5.75e-30 | 109 |
| Msa0516250 | MtrunA17_Chr5g0399931 | 58.333 | 72 | 30 | 0 | 143 | 214 | 1 | 72 | 4.67e-20 | 80.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0516250 | AT5G24270.4 | 71.556 | 225 | 53 | 2 | 1 | 223 | 1 | 216 | 4.07e-112 | 320 |
| Msa0516250 | AT5G24270.1 | 71.556 | 225 | 53 | 2 | 1 | 223 | 1 | 216 | 4.07e-112 | 320 |
| Msa0516250 | AT5G24270.2 | 71.556 | 225 | 53 | 2 | 1 | 223 | 1 | 216 | 4.07e-112 | 320 |
| Msa0516250 | AT5G24270.5 | 77.419 | 186 | 42 | 0 | 38 | 223 | 6 | 191 | 1.46e-102 | 295 |
| Msa0516250 | AT4G17615.4 | 60.181 | 221 | 77 | 2 | 1 | 221 | 1 | 210 | 1.61e-91 | 268 |
| Msa0516250 | AT4G17615.1 | 60.181 | 221 | 77 | 2 | 1 | 221 | 1 | 210 | 1.61e-91 | 268 |
| Msa0516250 | AT4G17615.5 | 60.181 | 221 | 77 | 2 | 1 | 221 | 1 | 210 | 1.61e-91 | 268 |
| Msa0516250 | AT5G47100.1 | 59.729 | 221 | 78 | 2 | 1 | 221 | 1 | 210 | 4.65e-91 | 266 |
| Msa0516250 | AT1G64480.2 | 61.751 | 217 | 74 | 1 | 5 | 221 | 7 | 214 | 9.07e-91 | 266 |
| Msa0516250 | AT1G64480.3 | 61.751 | 217 | 74 | 1 | 5 | 221 | 7 | 214 | 9.07e-91 | 266 |
| Msa0516250 | AT1G64480.1 | 61.751 | 217 | 74 | 1 | 5 | 221 | 7 | 214 | 9.07e-91 | 266 |
| Msa0516250 | AT4G26570.1 | 59.242 | 211 | 77 | 1 | 12 | 222 | 25 | 226 | 1.02e-88 | 261 |
| Msa0516250 | AT4G33000.2 | 66.667 | 183 | 61 | 0 | 39 | 221 | 64 | 246 | 1.05e-86 | 257 |
| Msa0516250 | AT4G26570.2 | 58.140 | 215 | 77 | 2 | 12 | 222 | 25 | 230 | 1.44e-86 | 256 |
| Msa0516250 | AT4G33000.1 | 66.667 | 183 | 61 | 0 | 39 | 221 | 74 | 256 | 1.69e-86 | 256 |
| Msa0516250 | AT5G24270.3 | 74.233 | 163 | 42 | 0 | 61 | 223 | 7 | 169 | 3.47e-86 | 253 |
| Msa0516250 | AT5G55990.1 | 55.856 | 222 | 87 | 2 | 1 | 222 | 16 | 226 | 4.35e-86 | 254 |
| Msa0516250 | AT5G55990.2 | 55.856 | 222 | 87 | 2 | 1 | 222 | 16 | 226 | 4.35e-86 | 254 |
| Msa0516250 | AT4G17615.3 | 60.870 | 207 | 70 | 2 | 1 | 207 | 1 | 196 | 2.09e-84 | 251 |
| Msa0516250 | AT1G64480.4 | 61.500 | 200 | 68 | 1 | 5 | 204 | 7 | 197 | 7.03e-82 | 243 |
| Msa0516250 | AT4G16350.2 | 57.065 | 184 | 75 | 1 | 39 | 222 | 41 | 220 | 5.55e-73 | 221 |
| Msa0516250 | AT4G16350.1 | 57.065 | 184 | 75 | 1 | 39 | 222 | 41 | 220 | 5.55e-73 | 221 |
| Msa0516250 | AT4G17615.2 | 63.694 | 157 | 57 | 0 | 65 | 221 | 12 | 168 | 2.61e-71 | 215 |
| Msa0516250 | AT4G01420.1 | 47.664 | 214 | 100 | 2 | 1 | 214 | 1 | 202 | 2.71e-66 | 203 |
| Msa0516250 | AT5G47100.2 | 59.524 | 168 | 57 | 2 | 1 | 168 | 1 | 157 | 3.06e-65 | 200 |
| Msa0516250 | AT4G01420.2 | 47.549 | 204 | 95 | 2 | 1 | 204 | 1 | 192 | 2.06e-62 | 193 |
| Msa0516250 | AT4G26560.1 | 47.396 | 192 | 88 | 2 | 44 | 222 | 23 | 214 | 5.09e-61 | 190 |
| Msa0516250 | AT4G33000.4 | 65.116 | 129 | 45 | 0 | 39 | 167 | 64 | 192 | 1.01e-54 | 174 |
| Msa0516250 | AT4G33000.6 | 65.116 | 129 | 45 | 0 | 39 | 167 | 64 | 192 | 1.01e-54 | 174 |
| Msa0516250 | AT4G33000.5 | 65.625 | 128 | 44 | 0 | 39 | 166 | 64 | 191 | 1.42e-54 | 174 |
| Msa0516250 | AT4G33000.3 | 66.667 | 81 | 27 | 0 | 39 | 119 | 64 | 144 | 4.68e-31 | 112 |
Find 50 sgRNAs with CRISPR-Local
Find 186 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATAGTCTTACTTATTGTTAT+TGG | 0.178074 | 3_4:+67749671 | None:intergenic |
| ACTCAGAGGGTTGACTAATT+AGG | 0.204998 | 3_4:-67749904 | Msa0516250:exon |
| TTCTGTTCTTGCAATAAAAC+TGG | 0.228799 | 3_4:+67749934 | None:intergenic |
| CGCAACGGCGTTATTGAGTT+TGG | 0.301486 | 3_4:-67750712 | Msa0516250:CDS |
| CTCAGAGGGTTGACTAATTA+GGG | 0.347563 | 3_4:-67749903 | Msa0516250:exon |
| GGTTACACTTACTTTAGATA+TGG | 0.371596 | 3_4:+67750065 | None:intergenic |
| AATTCCAGCTAGCACTCTTC+AGG | 0.371966 | 3_4:-67750984 | Msa0516250:CDS |
| TTGTATGATCTGAGGCAAAC+AGG | 0.377411 | 3_4:-67750470 | Msa0516250:CDS |
| GCAGTTAAAGGAAATGGTAT+TGG | 0.379876 | 3_4:-67750348 | Msa0516250:intron |
| GGTGAATTTGTTCGATCTCT+TGG | 0.384084 | 3_4:-67750691 | Msa0516250:CDS |
| GTCATGTTCTTTATCAAAGA+TGG | 0.400140 | 3_4:+67750092 | None:intergenic |
| AGCAATTCAATTATTGAAGA+TGG | 0.401125 | 3_4:-67751125 | Msa0516250:CDS |
| TTGTCTTCTAAAGCCGCATT+TGG | 0.412464 | 3_4:+67750658 | None:intergenic |
| TTATTTGCAGTTAAAGGAAA+TGG | 0.412783 | 3_4:-67750354 | Msa0516250:intron |
| GATAGAGGCTATTGTGGATA+AGG | 0.439938 | 3_4:-67750285 | Msa0516250:intron |
| TATCCATCTTCATCATTAAC+CGG | 0.453433 | 3_4:-67751290 | Msa0516250:intron |
| GATTAAAGTGTAGTCACTAT+TGG | 0.470500 | 3_4:+67749875 | None:intergenic |
| CATTCCTGAAGAGTGCTAGC+TGG | 0.479014 | 3_4:+67750980 | None:intergenic |
| TAAACTCTTAAGTTGAAAGA+TGG | 0.501693 | 3_4:+67749736 | None:intergenic |
| GATGCTGATACAAAAGATGA+TGG | 0.508848 | 3_4:-67750158 | Msa0516250:CDS |
| GCTTTCAGATGATATGATAG+AGG | 0.531839 | 3_4:-67750300 | Msa0516250:CDS |
| GAGAGACGTTATCAAAGAGA+AGG | 0.533906 | 3_4:-67749782 | Msa0516250:three_prime_UTR |
| ACACTTACTTTAGATATGGA+AGG | 0.535196 | 3_4:+67750069 | None:intergenic |
| AATAAAACTGGGAAATGCTA+AGG | 0.541646 | 3_4:+67749946 | None:intergenic |
| GGACCATGTAATGTAAAACT+TGG | 0.548685 | 3_4:-67749759 | Msa0516250:three_prime_UTR |
| TTACCGGTTAATGATGAAGA+TGG | 0.551660 | 3_4:+67751287 | None:intergenic |
| AGAGACGTTATCAAAGAGAA+GGG | 0.555606 | 3_4:-67749781 | Msa0516250:three_prime_UTR |
| TACTTATTGTTATTGGAACA+AGG | 0.556750 | 3_4:+67749678 | None:intergenic |
| TAAAACACCACCAGGCTATG+AGG | 0.560691 | 3_4:-67751348 | Msa0516250:CDS |
| CTGATACAAAAGATGATGGA+AGG | 0.564303 | 3_4:-67750154 | Msa0516250:CDS |
| CACTTACTTTAGATATGGAA+GGG | 0.565574 | 3_4:+67750070 | None:intergenic |
| TGATATGATAGAGGCTATTG+TGG | 0.568591 | 3_4:-67750291 | Msa0516250:CDS |
| ACTGTGGGATCCTCATAGCC+TGG | 0.572736 | 3_4:+67751338 | None:intergenic |
| TCTGTTCTTGCAATAAAACT+GGG | 0.575355 | 3_4:+67749935 | None:intergenic |
| TGAAGATGGTCTTATTCACA+AGG | 0.588994 | 3_4:-67751111 | Msa0516250:intron |
| GTTTCAGAAGCAAGAACTGT+GGG | 0.589683 | 3_4:+67751323 | None:intergenic |
| AACAGAAGTTGAAGACTCAG+AGG | 0.590695 | 3_4:-67749918 | Msa0516250:CDS |
| TTATTTGATGTTAAGCGCAA+CGG | 0.591522 | 3_4:-67750727 | Msa0516250:CDS |
| GAAGGATTGATCAAGATGAG+TGG | 0.600746 | 3_4:-67750136 | Msa0516250:CDS |
| TGTATGATCTGAGGCAAACA+GGG | 0.613793 | 3_4:-67750469 | Msa0516250:CDS |
| AGTTACTGTGAGTGAAGTAG+AGG | 0.623440 | 3_4:-67751174 | Msa0516250:CDS |
| ACAGAAGTTGAAGACTCAGA+GGG | 0.628937 | 3_4:-67749917 | Msa0516250:CDS |
| AGGGTACATTGAAAGAGAAG+AGG | 0.631645 | 3_4:-67750450 | Msa0516250:intron |
| AAGAATGTTAAAACACCACC+AGG | 0.637444 | 3_4:-67751356 | Msa0516250:CDS |
| TAAGACTATTGTCTATTGTG+TGG | 0.662864 | 3_4:-67749657 | None:intergenic |
| GAGACGTTATCAAAGAGAAG+GGG | 0.663350 | 3_4:-67749780 | Msa0516250:three_prime_UTR |
| GTGGGATCCTCATAGCCTGG+TGG | 0.686147 | 3_4:+67751341 | None:intergenic |
| TGTTTCAGAAGCAAGAACTG+TGG | 0.689885 | 3_4:+67751322 | None:intergenic |
| GATGAAGATGGATACTCACA+AGG | 0.700807 | 3_4:+67751299 | None:intergenic |
| AGAGGGTTGACTAATTAGGG+AGG | 0.712501 | 3_4:-67749900 | Msa0516250:exon |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATATATATATATATAT+AGG | - | chr3_4:67751210-67751229 | Msa0516250:intron | 0.0% |
| !! | ATATATATATATATATATAT+AGG | - | chr3_4:67751210-67751229 | Msa0516250:intron | 0.0% |
| !! | ATTTCATAAATCTATTTATT+AGG | + | chr3_4:67749789-67749808 | None:intergenic | 10.0% |
| !!! | ATTTGTTTTAATCAATTTTA+AGG | + | chr3_4:67749821-67749840 | None:intergenic | 10.0% |
| !! | CTATATTAATATTAAACTTT+AGG | - | chr3_4:67750629-67750648 | Msa0516250:intron | 10.0% |
| !! | ATTTCATAAATCTATTTATT+AGG | + | chr3_4:67749789-67749808 | None:intergenic | 10.0% |
| !!! | ATTTGTTTTAATCAATTTTA+AGG | + | chr3_4:67749821-67749840 | None:intergenic | 10.0% |
| !! | CTATATTAATATTAAACTTT+AGG | - | chr3_4:67750629-67750648 | Msa0516250:intron | 10.0% |
| !! | ACAAAAATATTATTACTTCT+AGG | - | chr3_4:67750030-67750049 | Msa0516250:intron | 15.0% |
| !! | TTATGGTTATTTATTGAATT+GGG | - | chr3_4:67750519-67750538 | Msa0516250:intron | 15.0% |
| !! | ACAAAAATATTATTACTTCT+AGG | - | chr3_4:67750030-67750049 | Msa0516250:intron | 15.0% |
| !! | TTATGGTTATTTATTGAATT+GGG | - | chr3_4:67750519-67750538 | Msa0516250:intron | 15.0% |
| !! | TCATAAATCTATTTATTAGG+TGG | + | chr3_4:67749786-67749805 | None:intergenic | 20.0% |
| !! | AATAAGTCAAAAATCTATAG+AGG | + | chr3_4:67750298-67750317 | None:intergenic | 20.0% |
| !! | TTATAACTCTTGCTTAATAT+AGG | + | chr3_4:67750495-67750514 | None:intergenic | 20.0% |
| !! | GTTATGGTTATTTATTGAAT+TGG | - | chr3_4:67750518-67750537 | Msa0516250:intron | 20.0% |
| !! | TTTAATCTTATGTTAGAACT+TGG | - | chr3_4:67750654-67750673 | Msa0516250:CDS | 20.0% |
| !! | TTTAAATGTAACAATCGTAA+TGG | + | chr3_4:67750800-67750819 | None:intergenic | 20.0% |
| !!! | AAAAATGGATTTTCATTAAG+AGG | + | chr3_4:67750999-67751018 | None:intergenic | 20.0% |
| !!! | AATCCATTTTTTTTATTGAC+TGG | - | chr3_4:67751008-67751027 | Msa0516250:intron | 20.0% |
| !! | ATTCCAGTCAATAAAAAAAA+TGG | + | chr3_4:67751014-67751033 | None:intergenic | 20.0% |
| !!! | ATAGTCTTACTTATTGTTAT+TGG | + | chr3_4:67751372-67751391 | None:intergenic | 20.0% |
| !! | TCATAAATCTATTTATTAGG+TGG | + | chr3_4:67749786-67749805 | None:intergenic | 20.0% |
| !! | AATAAGTCAAAAATCTATAG+AGG | + | chr3_4:67750298-67750317 | None:intergenic | 20.0% |
| !! | TTATAACTCTTGCTTAATAT+AGG | + | chr3_4:67750495-67750514 | None:intergenic | 20.0% |
| !! | GTTATGGTTATTTATTGAAT+TGG | - | chr3_4:67750518-67750537 | Msa0516250:intron | 20.0% |
| !! | TTTAATCTTATGTTAGAACT+TGG | - | chr3_4:67750654-67750673 | Msa0516250:CDS | 20.0% |
| !! | TTTAAATGTAACAATCGTAA+TGG | + | chr3_4:67750800-67750819 | None:intergenic | 20.0% |
| !!! | AAAAATGGATTTTCATTAAG+AGG | + | chr3_4:67750999-67751018 | None:intergenic | 20.0% |
| !!! | AATCCATTTTTTTTATTGAC+TGG | - | chr3_4:67751008-67751027 | Msa0516250:intron | 20.0% |
| !! | ATTCCAGTCAATAAAAAAAA+TGG | + | chr3_4:67751014-67751033 | None:intergenic | 20.0% |
| !!! | ATAGTCTTACTTATTGTTAT+TGG | + | chr3_4:67751372-67751391 | None:intergenic | 20.0% |
| ! | AGCAATTCAATTATTGAAGA+TGG | - | chr3_4:67749915-67749934 | Msa0516250:CDS | 25.0% |
| ! | AGATAAAATGTCCTTAATTC+AGG | - | chr3_4:67749992-67750011 | Msa0516250:intron | 25.0% |
| ! | TATAACTCATCCATACTTTA+TGG | - | chr3_4:67750117-67750136 | Msa0516250:CDS | 25.0% |
| ! | GCAAGAGTTATAATATGTTA+TGG | - | chr3_4:67750502-67750521 | Msa0516250:intron | 25.0% |
| ! | TTATTTGCAGTTAAAGGAAA+TGG | - | chr3_4:67750686-67750705 | Msa0516250:CDS | 25.0% |
| !!! | TAAACTCTTAAGTTGAAAGA+TGG | + | chr3_4:67751307-67751326 | None:intergenic | 25.0% |
| !! | TACTTATTGTTATTGGAACA+AGG | + | chr3_4:67751365-67751384 | None:intergenic | 25.0% |
| ! | AGCAATTCAATTATTGAAGA+TGG | - | chr3_4:67749915-67749934 | Msa0516250:CDS | 25.0% |
| ! | AGATAAAATGTCCTTAATTC+AGG | - | chr3_4:67749992-67750011 | Msa0516250:intron | 25.0% |
| ! | TATAACTCATCCATACTTTA+TGG | - | chr3_4:67750117-67750136 | Msa0516250:CDS | 25.0% |
| ! | GCAAGAGTTATAATATGTTA+TGG | - | chr3_4:67750502-67750521 | Msa0516250:intron | 25.0% |
| ! | TTATTTGCAGTTAAAGGAAA+TGG | - | chr3_4:67750686-67750705 | Msa0516250:CDS | 25.0% |
| !!! | TAAACTCTTAAGTTGAAAGA+TGG | + | chr3_4:67751307-67751326 | None:intergenic | 25.0% |
| !! | TACTTATTGTTATTGGAACA+AGG | + | chr3_4:67751365-67751384 | None:intergenic | 25.0% |
| TATCCATCTTCATCATTAAC+CGG | - | chr3_4:67749750-67749769 | Msa0516250:three_prime_UTR | 30.0% | |
| TAAAATGTCCTTAATTCAGG+TGG | - | chr3_4:67749995-67750014 | Msa0516250:intron | 30.0% | |
| CAAGTTTAGACCATAAAGTA+TGG | + | chr3_4:67750130-67750149 | None:intergenic | 30.0% | |
| GCATTAGAATGAAATAATGC+AGG | + | chr3_4:67750257-67750276 | None:intergenic | 30.0% | |
| TTATTTGATGTTAAGCGCAA+CGG | - | chr3_4:67750313-67750332 | Msa0516250:CDS | 30.0% | |
| ATAGGAAACTCCAAAACTTA+GGG | + | chr3_4:67750477-67750496 | None:intergenic | 30.0% | |
| TATAGGAAACTCCAAAACTT+AGG | + | chr3_4:67750478-67750497 | None:intergenic | 30.0% | |
| !!! | TGATATTTGCAGTTGCTTTT+AGG | - | chr3_4:67750547-67750566 | Msa0516250:intron | 30.0% |
| TATGTTAGAACTTGGAATCA+TGG | - | chr3_4:67750662-67750681 | Msa0516250:CDS | 30.0% | |
| CATGGTTTATTTGCAGTTAA+AGG | - | chr3_4:67750680-67750699 | Msa0516250:CDS | 30.0% | |
| GTCATGTTCTTTATCAAAGA+TGG | + | chr3_4:67750951-67750970 | None:intergenic | 30.0% | |
| CACTTACTTTAGATATGGAA+GGG | + | chr3_4:67750973-67750992 | None:intergenic | 30.0% | |
| ACACTTACTTTAGATATGGA+AGG | + | chr3_4:67750974-67750993 | None:intergenic | 30.0% | |
| GGTTACACTTACTTTAGATA+TGG | + | chr3_4:67750978-67750997 | None:intergenic | 30.0% | |
| AATAAAACTGGGAAATGCTA+AGG | + | chr3_4:67751097-67751116 | None:intergenic | 30.0% | |
| TCTGTTCTTGCAATAAAACT+GGG | + | chr3_4:67751108-67751127 | None:intergenic | 30.0% | |
| TTCTGTTCTTGCAATAAAAC+TGG | + | chr3_4:67751109-67751128 | None:intergenic | 30.0% | |
| GATTAAAGTGTAGTCACTAT+TGG | + | chr3_4:67751168-67751187 | None:intergenic | 30.0% | |
| TATCCATCTTCATCATTAAC+CGG | - | chr3_4:67749750-67749769 | Msa0516250:three_prime_UTR | 30.0% | |
| TAAAATGTCCTTAATTCAGG+TGG | - | chr3_4:67749995-67750014 | Msa0516250:intron | 30.0% | |
| CAAGTTTAGACCATAAAGTA+TGG | + | chr3_4:67750130-67750149 | None:intergenic | 30.0% | |
| GCATTAGAATGAAATAATGC+AGG | + | chr3_4:67750257-67750276 | None:intergenic | 30.0% | |
| TTATTTGATGTTAAGCGCAA+CGG | - | chr3_4:67750313-67750332 | Msa0516250:CDS | 30.0% | |
| ATAGGAAACTCCAAAACTTA+GGG | + | chr3_4:67750477-67750496 | None:intergenic | 30.0% | |
| TATAGGAAACTCCAAAACTT+AGG | + | chr3_4:67750478-67750497 | None:intergenic | 30.0% | |
| !!! | TGATATTTGCAGTTGCTTTT+AGG | - | chr3_4:67750547-67750566 | Msa0516250:intron | 30.0% |
| TATGTTAGAACTTGGAATCA+TGG | - | chr3_4:67750662-67750681 | Msa0516250:CDS | 30.0% | |
| CATGGTTTATTTGCAGTTAA+AGG | - | chr3_4:67750680-67750699 | Msa0516250:CDS | 30.0% | |
| GTCATGTTCTTTATCAAAGA+TGG | + | chr3_4:67750951-67750970 | None:intergenic | 30.0% | |
| CACTTACTTTAGATATGGAA+GGG | + | chr3_4:67750973-67750992 | None:intergenic | 30.0% | |
| ACACTTACTTTAGATATGGA+AGG | + | chr3_4:67750974-67750993 | None:intergenic | 30.0% | |
| GGTTACACTTACTTTAGATA+TGG | + | chr3_4:67750978-67750997 | None:intergenic | 30.0% | |
| AATAAAACTGGGAAATGCTA+AGG | + | chr3_4:67751097-67751116 | None:intergenic | 30.0% | |
| TCTGTTCTTGCAATAAAACT+GGG | + | chr3_4:67751108-67751127 | None:intergenic | 30.0% | |
| TTCTGTTCTTGCAATAAAAC+TGG | + | chr3_4:67751109-67751128 | None:intergenic | 30.0% | |
| GATTAAAGTGTAGTCACTAT+TGG | + | chr3_4:67751168-67751187 | None:intergenic | 30.0% | |
| AAGAATGTTAAAACACCACC+AGG | - | chr3_4:67749684-67749703 | Msa0516250:three_prime_UTR | 35.0% | |
| ! | TTACCGGTTAATGATGAAGA+TGG | + | chr3_4:67749756-67749775 | None:intergenic | 35.0% |
| ATTAGGTGGAACAGAATTAC+CGG | + | chr3_4:67749772-67749791 | None:intergenic | 35.0% | |
| !! | TGAAGATGGTCTTATTCACA+AGG | - | chr3_4:67749929-67749948 | Msa0516250:CDS | 35.0% |
| AGAAAAATCTGTTTGCAGAC+AGG | - | chr3_4:67750089-67750108 | Msa0516250:CDS | 35.0% | |
| GAAAAATCTGTTTGCAGACA+GGG | - | chr3_4:67750090-67750109 | Msa0516250:CDS | 35.0% | |
| !!! | AAGCTCTAGGATCTTTTGAT+AGG | - | chr3_4:67750166-67750185 | Msa0516250:CDS | 35.0% |
| GAGGAGAAACAATTGTGAAA+AGG | + | chr3_4:67750279-67750298 | None:intergenic | 35.0% | |
| ! | TGGTGTTTTTCATCCAAATG+CGG | - | chr3_4:67750369-67750388 | Msa0516250:intron | 35.0% |
| ! | TTTGTCCTTTCCCTAAGTTT+TGG | - | chr3_4:67750464-67750483 | Msa0516250:CDS | 35.0% |
| AAACTCCAAAACTTAGGGAA+AGG | + | chr3_4:67750472-67750491 | None:intergenic | 35.0% | |
| !!! | CTTTTAGGTTGTATGATCTG+AGG | - | chr3_4:67750562-67750581 | Msa0516250:intron | 35.0% |
| GCAGTTAAAGGAAATGGTAT+TGG | - | chr3_4:67750692-67750711 | Msa0516250:CDS | 35.0% | |
| GCTTTCAGATGATATGATAG+AGG | - | chr3_4:67750740-67750759 | Msa0516250:intron | 35.0% | |
| TGATATGATAGAGGCTATTG+TGG | - | chr3_4:67750749-67750768 | Msa0516250:intron | 35.0% | |
| ATGTAACAATCGTAATGGCA+AGG | + | chr3_4:67750795-67750814 | None:intergenic | 35.0% | |
| GATGCTGATACAAAAGATGA+TGG | - | chr3_4:67750882-67750901 | Msa0516250:intron | 35.0% | |
| !! | CTGATACAAAAGATGATGGA+AGG | - | chr3_4:67750886-67750905 | Msa0516250:intron | 35.0% |
| AATATCCCTACAAAATGTGG+AGG | + | chr3_4:67751073-67751092 | None:intergenic | 35.0% | |
| GGTAATATCCCTACAAAATG+TGG | + | chr3_4:67751076-67751095 | None:intergenic | 35.0% | |
| AGAGACGTTATCAAAGAGAA+GGG | - | chr3_4:67751259-67751278 | Msa0516250:intron | 35.0% | |
| GGACCATGTAATGTAAAACT+TGG | - | chr3_4:67751281-67751300 | Msa0516250:intron | 35.0% | |
| ! | TGGCCAAGTTTTACATTACA+TGG | + | chr3_4:67751287-67751306 | None:intergenic | 35.0% |
| AAGAATGTTAAAACACCACC+AGG | - | chr3_4:67749684-67749703 | Msa0516250:three_prime_UTR | 35.0% | |
| ! | TTACCGGTTAATGATGAAGA+TGG | + | chr3_4:67749756-67749775 | None:intergenic | 35.0% |
| ATTAGGTGGAACAGAATTAC+CGG | + | chr3_4:67749772-67749791 | None:intergenic | 35.0% | |
| !! | TGAAGATGGTCTTATTCACA+AGG | - | chr3_4:67749929-67749948 | Msa0516250:CDS | 35.0% |
| AGAAAAATCTGTTTGCAGAC+AGG | - | chr3_4:67750089-67750108 | Msa0516250:CDS | 35.0% | |
| GAAAAATCTGTTTGCAGACA+GGG | - | chr3_4:67750090-67750109 | Msa0516250:CDS | 35.0% | |
| !!! | AAGCTCTAGGATCTTTTGAT+AGG | - | chr3_4:67750166-67750185 | Msa0516250:CDS | 35.0% |
| GAGGAGAAACAATTGTGAAA+AGG | + | chr3_4:67750279-67750298 | None:intergenic | 35.0% | |
| ! | TGGTGTTTTTCATCCAAATG+CGG | - | chr3_4:67750369-67750388 | Msa0516250:intron | 35.0% |
| ! | TTTGTCCTTTCCCTAAGTTT+TGG | - | chr3_4:67750464-67750483 | Msa0516250:CDS | 35.0% |
| AAACTCCAAAACTTAGGGAA+AGG | + | chr3_4:67750472-67750491 | None:intergenic | 35.0% | |
| !!! | CTTTTAGGTTGTATGATCTG+AGG | - | chr3_4:67750562-67750581 | Msa0516250:intron | 35.0% |
| GCAGTTAAAGGAAATGGTAT+TGG | - | chr3_4:67750692-67750711 | Msa0516250:CDS | 35.0% | |
| GCTTTCAGATGATATGATAG+AGG | - | chr3_4:67750740-67750759 | Msa0516250:intron | 35.0% | |
| TGATATGATAGAGGCTATTG+TGG | - | chr3_4:67750749-67750768 | Msa0516250:intron | 35.0% | |
| ATGTAACAATCGTAATGGCA+AGG | + | chr3_4:67750795-67750814 | None:intergenic | 35.0% | |
| GATGCTGATACAAAAGATGA+TGG | - | chr3_4:67750882-67750901 | Msa0516250:intron | 35.0% | |
| !! | CTGATACAAAAGATGATGGA+AGG | - | chr3_4:67750886-67750905 | Msa0516250:intron | 35.0% |
| AATATCCCTACAAAATGTGG+AGG | + | chr3_4:67751073-67751092 | None:intergenic | 35.0% | |
| GGTAATATCCCTACAAAATG+TGG | + | chr3_4:67751076-67751095 | None:intergenic | 35.0% | |
| AGAGACGTTATCAAAGAGAA+GGG | - | chr3_4:67751259-67751278 | Msa0516250:intron | 35.0% | |
| GGACCATGTAATGTAAAACT+TGG | - | chr3_4:67751281-67751300 | Msa0516250:intron | 35.0% | |
| ! | TGGCCAAGTTTTACATTACA+TGG | + | chr3_4:67751287-67751306 | None:intergenic | 35.0% |
| GTTTCAGAAGCAAGAACTGT+GGG | + | chr3_4:67749720-67749739 | None:intergenic | 40.0% | |
| TGTTTCAGAAGCAAGAACTG+TGG | + | chr3_4:67749721-67749740 | None:intergenic | 40.0% | |
| GATGAAGATGGATACTCACA+AGG | + | chr3_4:67749744-67749763 | None:intergenic | 40.0% | |
| AGTTACTGTGAGTGAAGTAG+AGG | - | chr3_4:67749866-67749885 | Msa0516250:three_prime_UTR | 40.0% | |
| ! | GAGATTAGCCACCTGAATTA+AGG | + | chr3_4:67750006-67750025 | None:intergenic | 40.0% |
| GATCTTCTTGTTCAAGCTCT+AGG | - | chr3_4:67750153-67750172 | Msa0516250:CDS | 40.0% | |
| ! | GGTGAATTTGTTCGATCTCT+TGG | - | chr3_4:67750349-67750368 | Msa0516250:intron | 40.0% |
| !! | TTGTCTTCTAAAGCCGCATT+TGG | + | chr3_4:67750385-67750404 | None:intergenic | 40.0% |
| ! | TTGTATGATCTGAGGCAAAC+AGG | - | chr3_4:67750570-67750589 | Msa0516250:intron | 40.0% |
| ! | TGTATGATCTGAGGCAAACA+GGG | - | chr3_4:67750571-67750590 | Msa0516250:intron | 40.0% |
| AGGGTACATTGAAAGAGAAG+AGG | - | chr3_4:67750590-67750609 | Msa0516250:intron | 40.0% | |
| GATAGAGGCTATTGTGGATA+AGG | - | chr3_4:67750755-67750774 | Msa0516250:intron | 40.0% | |
| GAAGGATTGATCAAGATGAG+TGG | - | chr3_4:67750904-67750923 | Msa0516250:intron | 40.0% | |
| AACAGAAGTTGAAGACTCAG+AGG | - | chr3_4:67751122-67751141 | Msa0516250:CDS | 40.0% | |
| ACAGAAGTTGAAGACTCAGA+GGG | - | chr3_4:67751123-67751142 | Msa0516250:CDS | 40.0% | |
| ACTCAGAGGGTTGACTAATT+AGG | - | chr3_4:67751136-67751155 | Msa0516250:CDS | 40.0% | |
| CTCAGAGGGTTGACTAATTA+GGG | - | chr3_4:67751137-67751156 | Msa0516250:CDS | 40.0% | |
| GAGAGACGTTATCAAAGAGA+AGG | - | chr3_4:67751258-67751277 | Msa0516250:intron | 40.0% | |
| GAGACGTTATCAAAGAGAAG+GGG | - | chr3_4:67751260-67751279 | Msa0516250:intron | 40.0% | |
| GTTTCAGAAGCAAGAACTGT+GGG | + | chr3_4:67749720-67749739 | None:intergenic | 40.0% | |
| TGTTTCAGAAGCAAGAACTG+TGG | + | chr3_4:67749721-67749740 | None:intergenic | 40.0% | |
| GATGAAGATGGATACTCACA+AGG | + | chr3_4:67749744-67749763 | None:intergenic | 40.0% | |
| AGTTACTGTGAGTGAAGTAG+AGG | - | chr3_4:67749866-67749885 | Msa0516250:three_prime_UTR | 40.0% | |
| ! | GAGATTAGCCACCTGAATTA+AGG | + | chr3_4:67750006-67750025 | None:intergenic | 40.0% |
| GATCTTCTTGTTCAAGCTCT+AGG | - | chr3_4:67750153-67750172 | Msa0516250:CDS | 40.0% | |
| ! | GGTGAATTTGTTCGATCTCT+TGG | - | chr3_4:67750349-67750368 | Msa0516250:intron | 40.0% |
| !! | TTGTCTTCTAAAGCCGCATT+TGG | + | chr3_4:67750385-67750404 | None:intergenic | 40.0% |
| ! | TTGTATGATCTGAGGCAAAC+AGG | - | chr3_4:67750570-67750589 | Msa0516250:intron | 40.0% |
| ! | TGTATGATCTGAGGCAAACA+GGG | - | chr3_4:67750571-67750590 | Msa0516250:intron | 40.0% |
| AGGGTACATTGAAAGAGAAG+AGG | - | chr3_4:67750590-67750609 | Msa0516250:intron | 40.0% | |
| GATAGAGGCTATTGTGGATA+AGG | - | chr3_4:67750755-67750774 | Msa0516250:intron | 40.0% | |
| GAAGGATTGATCAAGATGAG+TGG | - | chr3_4:67750904-67750923 | Msa0516250:intron | 40.0% | |
| AACAGAAGTTGAAGACTCAG+AGG | - | chr3_4:67751122-67751141 | Msa0516250:CDS | 40.0% | |
| ACAGAAGTTGAAGACTCAGA+GGG | - | chr3_4:67751123-67751142 | Msa0516250:CDS | 40.0% | |
| ACTCAGAGGGTTGACTAATT+AGG | - | chr3_4:67751136-67751155 | Msa0516250:CDS | 40.0% | |
| CTCAGAGGGTTGACTAATTA+GGG | - | chr3_4:67751137-67751156 | Msa0516250:CDS | 40.0% | |
| GAGAGACGTTATCAAAGAGA+AGG | - | chr3_4:67751258-67751277 | Msa0516250:intron | 40.0% | |
| GAGACGTTATCAAAGAGAAG+GGG | - | chr3_4:67751260-67751279 | Msa0516250:intron | 40.0% | |
| TAAAACACCACCAGGCTATG+AGG | - | chr3_4:67749692-67749711 | Msa0516250:three_prime_UTR | 45.0% | |
| AATTCCAGCTAGCACTCTTC+AGG | - | chr3_4:67750056-67750075 | Msa0516250:intron | 45.0% | |
| ! | ATGCCTCCTCCACATTTTGT+AGG | - | chr3_4:67751064-67751083 | Msa0516250:intron | 45.0% |
| ! | TGCCTCCTCCACATTTTGTA+GGG | - | chr3_4:67751065-67751084 | Msa0516250:intron | 45.0% |
| ATCCCTACAAAATGTGGAGG+AGG | + | chr3_4:67751070-67751089 | None:intergenic | 45.0% | |
| AGAGGGTTGACTAATTAGGG+AGG | - | chr3_4:67751140-67751159 | Msa0516250:CDS | 45.0% | |
| TAAAACACCACCAGGCTATG+AGG | - | chr3_4:67749692-67749711 | Msa0516250:three_prime_UTR | 45.0% | |
| AATTCCAGCTAGCACTCTTC+AGG | - | chr3_4:67750056-67750075 | Msa0516250:intron | 45.0% | |
| ! | ATGCCTCCTCCACATTTTGT+AGG | - | chr3_4:67751064-67751083 | Msa0516250:intron | 45.0% |
| ! | TGCCTCCTCCACATTTTGTA+GGG | - | chr3_4:67751065-67751084 | Msa0516250:intron | 45.0% |
| ATCCCTACAAAATGTGGAGG+AGG | + | chr3_4:67751070-67751089 | None:intergenic | 45.0% | |
| AGAGGGTTGACTAATTAGGG+AGG | - | chr3_4:67751140-67751159 | Msa0516250:CDS | 45.0% | |
| !! | CATTCCTGAAGAGTGCTAGC+TGG | + | chr3_4:67750063-67750082 | None:intergenic | 50.0% |
| CGCAACGGCGTTATTGAGTT+TGG | - | chr3_4:67750328-67750347 | Msa0516250:CDS | 50.0% | |
| !! | CATTCCTGAAGAGTGCTAGC+TGG | + | chr3_4:67750063-67750082 | None:intergenic | 50.0% |
| CGCAACGGCGTTATTGAGTT+TGG | - | chr3_4:67750328-67750347 | Msa0516250:CDS | 50.0% | |
| ACTGTGGGATCCTCATAGCC+TGG | + | chr3_4:67749705-67749724 | None:intergenic | 55.0% | |
| ACTGTGGGATCCTCATAGCC+TGG | + | chr3_4:67749705-67749724 | None:intergenic | 55.0% | |
| GTGGGATCCTCATAGCCTGG+TGG | + | chr3_4:67749702-67749721 | None:intergenic | 60.0% | |
| GTGGGATCCTCATAGCCTGG+TGG | + | chr3_4:67749702-67749721 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 67749660 | 67751402 | 67749660 | ID=Msa0516250;Name=Msa0516250 |
| chr3_4 | mRNA | 67749660 | 67751402 | 67749660 | ID=Msa0516250-mRNA-1;Parent=Msa0516250;Name=Msa0516250-mRNA-1;_AED=0.25;_eAED=0.27;_QI=0|0.87|0.88|1|0.87|0.77|9|215|224 |
| chr3_4 | exon | 67749660 | 67749806 | 67749660 | ID=Msa0516250-mRNA-1:exon:17728;Parent=Msa0516250-mRNA-1 |
| chr3_4 | exon | 67749845 | 67749976 | 67749845 | ID=Msa0516250-mRNA-1:exon:17727;Parent=Msa0516250-mRNA-1 |
| chr3_4 | exon | 67750077 | 67750189 | 67750077 | ID=Msa0516250-mRNA-1:exon:17726;Parent=Msa0516250-mRNA-1 |
| chr3_4 | exon | 67750286 | 67750366 | 67750286 | ID=Msa0516250-mRNA-1:exon:17725;Parent=Msa0516250-mRNA-1 |
| chr3_4 | exon | 67750451 | 67750503 | 67750451 | ID=Msa0516250-mRNA-1:exon:17724;Parent=Msa0516250-mRNA-1 |
| chr3_4 | exon | 67750650 | 67750758 | 67750650 | ID=Msa0516250-mRNA-1:exon:17723;Parent=Msa0516250-mRNA-1 |
| chr3_4 | exon | 67750951 | 67751010 | 67750951 | ID=Msa0516250-mRNA-1:exon:17722;Parent=Msa0516250-mRNA-1 |
| chr3_4 | exon | 67751112 | 67751194 | 67751112 | ID=Msa0516250-mRNA-1:exon:17721;Parent=Msa0516250-mRNA-1 |
| chr3_4 | exon | 67751291 | 67751402 | 67751291 | ID=Msa0516250-mRNA-1:exon:17720;Parent=Msa0516250-mRNA-1 |
| chr3_4 | CDS | 67751291 | 67751402 | 67751291 | ID=Msa0516250-mRNA-1:cds;Parent=Msa0516250-mRNA-1 |
| chr3_4 | CDS | 67751112 | 67751194 | 67751112 | ID=Msa0516250-mRNA-1:cds;Parent=Msa0516250-mRNA-1 |
| chr3_4 | CDS | 67750951 | 67751010 | 67750951 | ID=Msa0516250-mRNA-1:cds;Parent=Msa0516250-mRNA-1 |
| chr3_4 | CDS | 67750650 | 67750758 | 67750650 | ID=Msa0516250-mRNA-1:cds;Parent=Msa0516250-mRNA-1 |
| chr3_4 | CDS | 67750451 | 67750503 | 67750451 | ID=Msa0516250-mRNA-1:cds;Parent=Msa0516250-mRNA-1 |
| chr3_4 | CDS | 67750286 | 67750366 | 67750286 | ID=Msa0516250-mRNA-1:cds;Parent=Msa0516250-mRNA-1 |
| chr3_4 | CDS | 67750077 | 67750189 | 67750077 | ID=Msa0516250-mRNA-1:cds;Parent=Msa0516250-mRNA-1 |
| chr3_4 | CDS | 67749913 | 67749976 | 67749913 | ID=Msa0516250-mRNA-1:cds;Parent=Msa0516250-mRNA-1 |
| chr3_4 | three_prime_UTR | 67749845 | 67749912 | 67749845 | ID=Msa0516250-mRNA-1:three_prime_utr;Parent=Msa0516250-mRNA-1 |
| chr3_4 | three_prime_UTR | 67749660 | 67749806 | 67749660 | ID=Msa0516250-mRNA-1:three_prime_utr;Parent=Msa0516250-mRNA-1 |
| Gene Sequence |
| Protein sequence |
