AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0431430


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0431430 MtrunA17_Chr3g0135991 94.134 358 8 1 1 345 1 358 0.0 696
Msa0431430 MtrunA17_Chr1g0186361 26.609 233 153 5 81 296 576 807 5.17e-16 79.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0431430 AT4G33110.1 68.732 355 98 1 4 345 1 355 0.0 532
Msa0431430 AT4G33110.2 68.732 355 98 1 4 345 1 355 0.0 532
Msa0431430 AT4G33120.1 65.915 355 108 1 4 345 1 355 0.0 511
Msa0431430 AT3G23510.1 25.296 253 168 6 81 316 577 825 7.97e-14 73.2
Msa0431430 AT3G23530.1 24.901 253 169 6 81 316 577 825 1.37e-13 72.4
Msa0431430 AT3G23470.3 26.596 188 124 3 81 254 196 383 1.71e-13 71.6
Msa0431430 AT3G23470.2 26.596 188 124 3 81 254 196 383 1.71e-13 71.6
Msa0431430 AT3G23470.1 26.596 188 124 3 81 254 169 356 1.79e-13 71.6

Find 78 sgRNAs with CRISPR-Local

Find 160 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCATATGTTGATTCCATAAT+TGG 0.122160 3_2:+83480284 None:intergenic
AATTCGTAATGTTGAGATTT+TGG 0.142343 3_2:+83482267 None:intergenic
GAACTGTATGACCATCTTTC+AGG 0.193403 3_2:+83481476 None:intergenic
TCTTTCTTTAAGCTGGTTCT+TGG 0.257853 3_2:-83482237 Msa0431430:CDS
ATAGCTGTAGCAGAACTATT+TGG 0.260405 3_2:-83480215 Msa0431430:CDS
GTCAACCATTGGCTGGTAAA+TGG 0.264020 3_2:-83480492 Msa0431430:CDS
TCTAACCTCAAACATTTCTA+TGG 0.304284 3_2:+83481081 None:intergenic
ACGTGTGTGTCTTTGTTTAT+TGG 0.307858 3_2:-83482666 Msa0431430:five_prime_UTR
AATCAAGAGAATAATGGTTT+TGG 0.308594 3_2:+83480133 None:intergenic
ACAGTCAGTTCCAGGGTTAC+AGG 0.313587 3_2:-83481402 Msa0431430:intron
GACTTCCATCAAGCCAATTA+TGG 0.317037 3_2:-83480297 Msa0431430:CDS
CAAGAATTACAGTCAGTTCC+AGG 0.329562 3_2:-83481410 Msa0431430:intron
ATTACAAGATACTTCTTTAC+CGG 0.330934 3_2:-83480712 Msa0431430:CDS
AGAAATGATGAACGAATAAA+AGG 0.335415 3_2:+83480929 None:intergenic
AGTCTCCTGATGACGGCATC+AGG 0.366796 3_2:+83482505 None:intergenic
TTCTCAAATCAAGAGAATAA+TGG 0.385738 3_2:+83480127 None:intergenic
TCAACCATTGGCTGGTAAAT+GGG 0.399932 3_2:-83480491 Msa0431430:CDS
AGAAAGTACAGTGAGCAAAT+TGG 0.401458 3_2:+83482407 None:intergenic
ACCTACCTCTTTCTTTAAGC+TGG 0.401709 3_2:-83482244 Msa0431430:CDS
AGCCTCTTCCAATGTCTTTG+AGG 0.408387 3_2:+83481537 None:intergenic
TGTCAACTACGACGGCCATT+TGG 0.412090 3_2:+83479946 None:intergenic
TGCTCCCTGATGCCGTCATC+AGG 0.412465 3_2:-83482510 Msa0431430:CDS
GAACTATTTGGATACAATAA+TGG 0.412686 3_2:-83480203 Msa0431430:CDS
TGATTCCATAATTGGCTTGA+TGG 0.414616 3_2:+83480292 None:intergenic
CTTGATTTGAGAATTGAGTC+AGG 0.440610 3_2:-83480117 Msa0431430:three_prime_UTR
ACATCAGTACTGACAGCAAT+AGG 0.445899 3_2:+83482291 None:intergenic
CTACCAAATGGACTGTCTAC+TGG 0.453211 3_2:-83480250 Msa0431430:CDS
AGACATTAGTACATTTGAAA+TGG 0.457001 3_2:-83481128 Msa0431430:CDS
CCAATTATGGAATCAACATA+TGG 0.460490 3_2:-83480284 Msa0431430:CDS
AGCTTCACGGTGGTGTTGTA+AGG 0.461791 3_2:+83482559 None:intergenic
ATTGCAGATTCCTGTAACCC+TGG 0.462607 3_2:+83481392 None:intergenic
GCCATCCACTTTCATCCAGT+TGG 0.469157 3_2:+83480951 None:intergenic
CTCTTCTGCCTCAAAGACAT+TGG 0.471861 3_2:-83481545 Msa0431430:CDS
AAGTGTGGTGTGGTAGTTGA+TGG 0.474442 3_2:-83482608 Msa0431430:exon
TGCTGCAGGCATAGTTCCTC+CGG 0.476336 3_2:+83480693 None:intergenic
AGCATTTGCCTACCACTTTG+AGG 0.477976 3_2:-83480899 Msa0431430:intron
TTCTCAAGAAGATATCCAAC+TGG 0.482343 3_2:-83480966 Msa0431430:CDS
AAGAACCAGCTTAAAGAAAG+AGG 0.482405 3_2:+83482239 None:intergenic
TGAAGAGTGGCTCAAAAGAA+TGG 0.485809 3_2:-83480330 Msa0431430:CDS
GCAAAGATTCAGCTACCAAA+TGG 0.488606 3_2:-83480262 Msa0431430:CDS
GAAAGCTGAAGTTCAGAAGA+AGG 0.489672 3_2:+83482439 None:intergenic
TGTGACTTGTTCTGTTCTTG+TGG 0.492519 3_2:+83482640 None:intergenic
TCTCCAGTAGACAGTCCATT+TGG 0.500310 3_2:+83480247 None:intergenic
TTGGAAACAACCTCAAATAC+AGG 0.508399 3_2:-83482218 Msa0431430:intron
CTACGACGGCCATTTGGCAT+TGG 0.511496 3_2:+83479952 None:intergenic
ACAGTTCTTGATGTCGGATG+CGG 0.517068 3_2:-83481460 Msa0431430:intron
GATACAATAATGGTGAAGAA+TGG 0.527408 3_2:-83480193 Msa0431430:CDS
ACCACCGTGAAGCTGATGCT+TGG 0.540117 3_2:-83482550 Msa0431430:CDS
TGCCTCAAAGACATTGGAAG+AGG 0.542100 3_2:-83481539 Msa0431430:CDS
TGAACCAAGCATCAGCTTCA+CGG 0.542958 3_2:+83482546 None:intergenic
GTTTCCCATTTACCAGCCAA+TGG 0.543039 3_2:+83480487 None:intergenic
GATATCCAACTGGATGAAAG+TGG 0.544699 3_2:-83480956 Msa0431430:CDS
GAAAACAGACCAATGCCAAA+TGG 0.548848 3_2:-83479961 Msa0431430:three_prime_UTR
GTGGTAGTTGATGGAAAAGA+TGG 0.551164 3_2:-83482599 Msa0431430:exon
AGTGGTAGGCAAATGCTTTG+TGG 0.556397 3_2:+83480905 None:intergenic
CAATAATGGTGAAGAATGGA+TGG 0.562198 3_2:-83480189 Msa0431430:CDS
GCCGTCGTAGTTGACACAAA+AGG 0.564039 3_2:-83479939 Msa0431430:three_prime_UTR
ATCAGAGTGATATCTTCACT+TGG 0.565437 3_2:-83479983 Msa0431430:three_prime_UTR
AAGAATTACAGTCAGTTCCA+GGG 0.566533 3_2:-83481409 Msa0431430:intron
ATGTTACTGTTGTCAACCAT+TGG 0.570038 3_2:-83480503 Msa0431430:CDS
TAAAGAAGTAGATTTGCTGC+AGG 0.572831 3_2:+83480679 None:intergenic
TACTGTTGTCAACCATTGGC+TGG 0.579302 3_2:-83480499 Msa0431430:CDS
GAAGTTTACCTCAAAGTGGT+AGG 0.587833 3_2:+83480891 None:intergenic
GAGAGATCAAACCTGAAAGA+TGG 0.590354 3_2:-83481487 Msa0431430:CDS
GGTCATACAGTTCTTGATGT+CGG 0.592044 3_2:-83481466 Msa0431430:CDS
GGAAACACTACGCACAAACC+AGG 0.597454 3_2:-83480470 Msa0431430:intron
GGAGCTGCAGCTGCAAAATG+TGG 0.607827 3_2:-83481164 Msa0431430:CDS
ACCAGCTTAAAGAAAGAGGT+AGG 0.613974 3_2:+83482243 None:intergenic
ACGTGTGAGTCTCCTGATGA+CGG 0.614974 3_2:+83482498 None:intergenic
TCCAACTGGATGAAAGTGGA+TGG 0.617956 3_2:-83480952 Msa0431430:CDS
ATATGAAGTTTACCTCAAAG+TGG 0.632893 3_2:+83480887 None:intergenic
GTCTCCTGATGACGGCATCA+GGG 0.634408 3_2:+83482506 None:intergenic
ACAAGATACTTCTTTACCGG+AGG 0.634907 3_2:-83480709 Msa0431430:CDS
GTCACAGAAGTCAAGAAGTG+TGG 0.656919 3_2:-83482623 Msa0431430:five_prime_UTR
AAAGACACACACGTACGTTG+TGG 0.660038 3_2:+83482675 None:intergenic
AGAAGTCAAGAAGTGTGGTG+TGG 0.696584 3_2:-83482618 Msa0431430:five_prime_UTR
AAGGCTTGTAAGAAGAACGA+AGG 0.696633 3_2:+83482458 None:intergenic
ACCAAGCATCAGCTTCACGG+TGG 0.763639 3_2:+83482549 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAAAAAGTAAAAAGATA+AGG - chr3_2:83479855-83479874 Msa0431430:three_prime_UTR 10.0%
!! TGTTCTATATATAACAAAAT+CGG + chr3_2:83480191-83480210 None:intergenic 15.0%
!!! TATAAGTTATTTCTATACAA+GGG - chr3_2:83480591-83480610 Msa0431430:intron 15.0%
!! TTAAATTGTTTATCCAAACA+CGG + chr3_2:83480530-83480549 None:intergenic 20.0%
!!! GTATAAGTTATTTCTATACA+AGG - chr3_2:83480590-83480609 Msa0431430:intron 20.0%
!!! AATCATTTTACATCGTATTA+AGG + chr3_2:83480882-83480901 None:intergenic 20.0%
!! TGAACATTACATAAATCATA+AGG + chr3_2:83480974-83480993 None:intergenic 20.0%
!! TACAATATCAAGAAATATAC+CGG + chr3_2:83481241-83481260 None:intergenic 20.0%
!! TATCACTCTGATAAAAAAAT+AGG + chr3_2:83482581-83482600 None:intergenic 20.0%
!!! GAATAAATTTCATTTTAGTG+TGG - chr3_2:83482661-83482680 Msa0431430:five_prime_UTR 20.0%
!! ATTCGTAATGTTGAGATTTT+GGG + chr3_2:83480307-83480326 None:intergenic 25.0%
!! AATTCGTAATGTTGAGATTT+TGG + chr3_2:83480308-83480327 None:intergenic 25.0%
! CTTAAAAATACCTGTATTTG+AGG + chr3_2:83480367-83480386 None:intergenic 25.0%
! CTTATACAATAAGCTGAAAA+CGG - chr3_2:83480678-83480697 Msa0431430:CDS 25.0%
!! GATTTATTTGAGTTTATCCA+CGG + chr3_2:83480767-83480786 None:intergenic 25.0%
! CTCAAATAAATCAAGTCAAA+CGG - chr3_2:83480775-83480794 Msa0431430:intron 25.0%
! GATGTAAAATGATTGTTTCA+TGG - chr3_2:83480888-83480907 Msa0431430:intron 25.0%
! ATGTTCATATTTGTATGAAC+TGG - chr3_2:83480987-83481006 Msa0431430:CDS 25.0%
! AGACATTAGTACATTTGAAA+TGG - chr3_2:83481444-83481463 Msa0431430:intron 25.0%
!! ATTTTCCATAGAAATGTTTG+AGG - chr3_2:83481486-83481505 Msa0431430:CDS 25.0%
! AGAAATGATGAACGAATAAA+AGG + chr3_2:83481646-83481665 None:intergenic 25.0%
!!! CAATTAGTCTTATTAGGTAT+TGG + chr3_2:83481764-83481783 None:intergenic 25.0%
!!! AGAACTCAATTAGTCTTATT+AGG + chr3_2:83481770-83481789 None:intergenic 25.0%
! ATTACAAGATACTTCTTTAC+CGG - chr3_2:83481860-83481879 Msa0431430:intron 25.0%
! GCTTTACACAACAAAATTAT+CGG + chr3_2:83481986-83482005 None:intergenic 25.0%
! AGAATCATGACGAAATATAA+AGG + chr3_2:83482008-83482027 None:intergenic 25.0%
! TCACTTGTAATTGAATTCTT+TGG - chr3_2:83482030-83482049 Msa0431430:intron 25.0%
! TCTATCCATAGTTTACTATT+TGG - chr3_2:83482165-83482184 Msa0431430:intron 25.0%
! GAACTATTTGGATACAATAA+TGG - chr3_2:83482369-83482388 Msa0431430:intron 25.0%
!! AATCAAGAGAATAATGGTTT+TGG + chr3_2:83482442-83482461 None:intergenic 25.0%
! TTCTCAAATCAAGAGAATAA+TGG + chr3_2:83482448-83482467 None:intergenic 25.0%
!!! AAATTTCATTTTAGTGTGGT+TGG - chr3_2:83482665-83482684 Msa0431430:five_prime_UTR 25.0%
! ATCTAAGAACTGATTCATCA+AGG - chr3_2:83480416-83480435 Msa0431430:intron 30.0%
! TCTAAGAACTGATTCATCAA+GGG - chr3_2:83480417-83480436 Msa0431430:intron 30.0%
TATATTACTAAGACCGTGTT+TGG - chr3_2:83480514-83480533 Msa0431430:intron 30.0%
AATAAGCTGAAAACGGTTTA+TGG - chr3_2:83480685-83480704 Msa0431430:CDS 30.0%
ACTATCTTTAACGAATATGG+TGG - chr3_2:83480798-83480817 Msa0431430:intron 30.0%
!!! AATAAAAGCTTTTTGAGTCG+TGG + chr3_2:83481207-83481226 None:intergenic 30.0%
! GACTCAAAAAGCTTTTATTG+AGG - chr3_2:83481208-83481227 Msa0431430:intron 30.0%
AAACTATATGACATGCACAA+TGG + chr3_2:83481277-83481296 None:intergenic 30.0%
! ATGATTTGCAAGACAAGTAT+TGG + chr3_2:83481340-83481359 None:intergenic 30.0%
TCTAACCTCAAACATTTCTA+TGG + chr3_2:83481494-83481513 None:intergenic 30.0%
!! ATGTTTGAGGTTAGATTTTG+TGG - chr3_2:83481499-83481518 Msa0431430:CDS 30.0%
!! TGTTTGAGGTTAGATTTTGT+GGG - chr3_2:83481500-83481519 Msa0431430:CDS 30.0%
ATATGAAGTTTACCTCAAAG+TGG + chr3_2:83481688-83481707 None:intergenic 30.0%
! TACTTGCTACTTATACATGT+AGG - chr3_2:83481817-83481836 Msa0431430:intron 30.0%
AGGACAAAAATGAAGATGAT+TGG - chr3_2:83481837-83481856 Msa0431430:intron 30.0%
CTACATAATTCAAGCTTACT+TGG + chr3_2:83481922-83481941 None:intergenic 30.0%
GTTGGAATATGCATAATTGT+TGG - chr3_2:83482124-83482143 Msa0431430:intron 30.0%
CGTTACCAAATAGTAAACTA+TGG + chr3_2:83482173-83482192 None:intergenic 30.0%
!!! ATTTATTTTGCAGTGAAGAG+TGG - chr3_2:83482229-83482248 Msa0431430:CDS 30.0%
!! CCATATGTTGATTCCATAAT+TGG + chr3_2:83482291-83482310 None:intergenic 30.0%
CCAATTATGGAATCAACATA+TGG - chr3_2:83482288-83482307 Msa0431430:CDS 30.0%
GATACAATAATGGTGAAGAA+TGG - chr3_2:83482379-83482398 Msa0431430:intron 30.0%
AAAACAAAAACTGTTCAACG+AGG - chr3_2:83482490-83482509 Msa0431430:CDS 30.0%
ACTCTGATAAAAAAATAGGC+AGG + chr3_2:83482577-83482596 None:intergenic 30.0%
! ACGTGTGTGTCTTTGTTTAT+TGG - chr3_2:83479906-83479925 Msa0431430:three_prime_UTR 35.0%
! AGAAAGTACAGTGAGCAAAT+TGG + chr3_2:83480168-83480187 None:intergenic 35.0%
AAGAACCAGCTTAAAGAAAG+AGG + chr3_2:83480336-83480355 None:intergenic 35.0%
! TCTTTCTTTAAGCTGGTTCT+TGG - chr3_2:83480335-83480354 Msa0431430:intron 35.0%
TTGGAAACAACCTCAAATAC+AGG - chr3_2:83480354-83480373 Msa0431430:intron 35.0%
TGCAGTTAAGCTATACACAA+AGG + chr3_2:83480480-83480499 None:intergenic 35.0%
TGTGTATAGCTTAACTGCAT+TGG - chr3_2:83480481-83480500 Msa0431430:CDS 35.0%
GTGTATAGCTTAACTGCATT+GGG - chr3_2:83480482-83480501 Msa0431430:CDS 35.0%
AAAACACCTGTGAGACTATT+AGG + chr3_2:83480741-83480760 None:intergenic 35.0%
CGGACTATCTTTAACGAATA+TGG - chr3_2:83480795-83480814 Msa0431430:intron 35.0%
TCTTTAACGAATATGGTGGT+AGG - chr3_2:83480802-83480821 Msa0431430:intron 35.0%
CTTTAACGAATATGGTGGTA+GGG - chr3_2:83480803-83480822 Msa0431430:intron 35.0%
AAGAATTACAGTCAGTTCCA+GGG - chr3_2:83481163-83481182 Msa0431430:CDS 35.0%
! CTTTTATTGAGGAGAAATGC+CGG - chr3_2:83481219-83481238 Msa0431430:intron 35.0%
TTCTCAAGAAGATATCCAAC+TGG - chr3_2:83481606-83481625 Msa0431430:intron 35.0%
CAAACTGAGATAGTCAACTA+AGG + chr3_2:83481715-83481734 None:intergenic 35.0%
!! TAAAGAAGTAGATTTGCTGC+AGG + chr3_2:83481896-83481915 None:intergenic 35.0%
!! AATTCTTTGGTGATGTGTGA+AGG - chr3_2:83482043-83482062 Msa0431430:intron 35.0%
ATGTTACTGTTGTCAACCAT+TGG - chr3_2:83482069-83482088 Msa0431430:intron 35.0%
CAATTATGCATATTCCAACC+TGG + chr3_2:83482123-83482142 None:intergenic 35.0%
!! TGATTCCATAATTGGCTTGA+TGG + chr3_2:83482283-83482302 None:intergenic 35.0%
ATAGCTGTAGCAGAACTATT+TGG - chr3_2:83482357-83482376 Msa0431430:intron 35.0%
CAATAATGGTGAAGAATGGA+TGG - chr3_2:83482383-83482402 Msa0431430:intron 35.0%
! CTTGATTTGAGAATTGAGTC+AGG - chr3_2:83482455-83482474 Msa0431430:CDS 35.0%
ATCAGAGTGATATCTTCACT+TGG - chr3_2:83482589-83482608 Msa0431430:CDS 35.0%
!!! CGTTGTGGTAGTCTTGTTTT+CGG + chr3_2:83479885-83479904 None:intergenic 40.0%
!! TGTGACTTGTTCTGTTCTTG+TGG + chr3_2:83479935-83479954 None:intergenic 40.0%
!! GTGGTAGTTGATGGAAAAGA+TGG - chr3_2:83479973-83479992 Msa0431430:three_prime_UTR 40.0%
AAGGCTTGTAAGAAGAACGA+AGG + chr3_2:83480117-83480136 None:intergenic 40.0%
GAAAGCTGAAGTTCAGAAGA+AGG + chr3_2:83480136-83480155 None:intergenic 40.0%
!! ACATCAGTACTGACAGCAAT+AGG + chr3_2:83480284-83480303 None:intergenic 40.0%
ACCTACCTCTTTCTTTAAGC+TGG - chr3_2:83480328-83480347 Msa0431430:CDS 40.0%
ACCAGCTTAAAGAAAGAGGT+AGG + chr3_2:83480332-83480351 None:intergenic 40.0%
ACGGTTTATGGACATGTCAT+AGG - chr3_2:83480697-83480716 Msa0431430:CDS 40.0%
GTTTCATGGATGCAGTTTGT+TGG - chr3_2:83480902-83480921 Msa0431430:CDS 40.0%
GAGAGATCAAACCTGAAAGA+TGG - chr3_2:83481085-83481104 Msa0431430:intron 40.0%
GAACTGTATGACCATCTTTC+AGG + chr3_2:83481099-83481118 None:intergenic 40.0%
GGTCATACAGTTCTTGATGT+CGG - chr3_2:83481106-83481125 Msa0431430:CDS 40.0%
CTGGAACTGACTGTAATTCT+TGG + chr3_2:83481164-83481183 None:intergenic 40.0%
CAAGAATTACAGTCAGTTCC+AGG - chr3_2:83481162-83481181 Msa0431430:CDS 40.0%
AACAAACAGCTCTTCTTGCA+TGG - chr3_2:83481312-83481331 Msa0431430:intron 40.0%
GTTCTTCATATGCTGTGTCA+TGG + chr3_2:83481576-83481595 None:intergenic 40.0%
GATATCCAACTGGATGAAAG+TGG - chr3_2:83481616-83481635 Msa0431430:intron 40.0%
GAAGTTTACCTCAAAGTGGT+AGG + chr3_2:83481684-83481703 None:intergenic 40.0%
ACAAGATACTTCTTTACCGG+AGG - chr3_2:83481863-83481882 Msa0431430:intron 40.0%
GGTACTGCTGCAATACTATT+GGG + chr3_2:83481965-83481984 None:intergenic 40.0%
! TCAACCATTGGCTGGTAAAT+GGG - chr3_2:83482081-83482100 Msa0431430:intron 40.0%
TGAAGAGTGGCTCAAAAGAA+TGG - chr3_2:83482242-83482261 Msa0431430:CDS 40.0%
GACTTCCATCAAGCCAATTA+TGG - chr3_2:83482275-83482294 Msa0431430:CDS 40.0%
GCAAAGATTCAGCTACCAAA+TGG - chr3_2:83482310-83482329 Msa0431430:intron 40.0%
GAAAACAGACCAATGCCAAA+TGG - chr3_2:83482611-83482630 Msa0431430:exon 40.0%
! TCCTTTTGTGTCAACTACGA+CGG + chr3_2:83482637-83482656 None:intergenic 40.0%
AAAGACACACACGTACGTTG+TGG + chr3_2:83479900-83479919 None:intergenic 45.0%
GTCACAGAAGTCAAGAAGTG+TGG - chr3_2:83479949-83479968 Msa0431430:three_prime_UTR 45.0%
! AGAAGTCAAGAAGTGTGGTG+TGG - chr3_2:83479954-83479973 Msa0431430:three_prime_UTR 45.0%
AAGTGTGGTGTGGTAGTTGA+TGG - chr3_2:83479964-83479983 Msa0431430:three_prime_UTR 45.0%
TGAACCAAGCATCAGCTTCA+CGG + chr3_2:83480029-83480048 None:intergenic 45.0%
! ACTGATTCATCAAGGGTGTG+TGG - chr3_2:83480424-83480443 Msa0431430:intron 45.0%
! CTGATTCATCAAGGGTGTGT+GGG - chr3_2:83480425-83480444 Msa0431430:intron 45.0%
GTGTGGGATGAATGAATGGT+AGG - chr3_2:83480441-83480460 Msa0431430:intron 45.0%
GTTCTGCCTAATAGTCTCAC+AGG - chr3_2:83480732-83480751 Msa0431430:CDS 45.0%
CGAATATGGTGGTAGGGTAA+AGG - chr3_2:83480809-83480828 Msa0431430:intron 45.0%
CTCTTCTGCCTCAAAGACAT+TGG - chr3_2:83481027-83481046 Msa0431430:intron 45.0%
TGCCTCAAAGACATTGGAAG+AGG - chr3_2:83481033-83481052 Msa0431430:intron 45.0%
AGCCTCTTCCAATGTCTTTG+AGG + chr3_2:83481038-83481057 None:intergenic 45.0%
ACAGTTCTTGATGTCGGATG+CGG - chr3_2:83481112-83481131 Msa0431430:CDS 45.0%
ATTGCAGATTCCTGTAACCC+TGG + chr3_2:83481183-83481202 None:intergenic 45.0%
TCCAACTGGATGAAAGTGGA+TGG - chr3_2:83481620-83481639 Msa0431430:intron 45.0%
AGTGGTAGGCAAATGCTTTG+TGG + chr3_2:83481670-83481689 None:intergenic 45.0%
AGCATTTGCCTACCACTTTG+AGG - chr3_2:83481673-83481692 Msa0431430:intron 45.0%
CGGTACTGCTGCAATACTAT+TGG + chr3_2:83481966-83481985 None:intergenic 45.0%
TACTGTTGTCAACCATTGGC+TGG - chr3_2:83482073-83482092 Msa0431430:intron 45.0%
! GTCAACCATTGGCTGGTAAA+TGG - chr3_2:83482080-83482099 Msa0431430:intron 45.0%
GTTTCCCATTTACCAGCCAA+TGG + chr3_2:83482088-83482107 None:intergenic 45.0%
!! CTACCAAATGGACTGTCTAC+TGG - chr3_2:83482322-83482341 Msa0431430:intron 45.0%
TCTCCAGTAGACAGTCCATT+TGG + chr3_2:83482328-83482347 None:intergenic 45.0%
!! AGCTTCACGGTGGTGTTGTA+AGG + chr3_2:83480016-83480035 None:intergenic 50.0%
ACGTGTGAGTCTCCTGATGA+CGG + chr3_2:83480077-83480096 None:intergenic 50.0%
GGGTGTGTGGGATGAATGAA+TGG - chr3_2:83480437-83480456 Msa0431430:intron 50.0%
!! CTCACAGGTGTTTTTGTCCG+TGG - chr3_2:83480747-83480766 Msa0431430:intron 50.0%
TTCTTGATGTCGGATGCGGT+TGG - chr3_2:83481116-83481135 Msa0431430:CDS 50.0%
TCTTGATGTCGGATGCGGTT+GGG - chr3_2:83481117-83481136 Msa0431430:CDS 50.0%
ACAGTCAGTTCCAGGGTTAC+AGG - chr3_2:83481170-83481189 Msa0431430:intron 50.0%
! TTTTTCACTGCCCCCTTGTC+AGG - chr3_2:83481386-83481405 Msa0431430:CDS 50.0%
! TTTTCACTGCCCCCTTGTCA+GGG - chr3_2:83481387-83481406 Msa0431430:CDS 50.0%
GCCATCCACTTTCATCCAGT+TGG + chr3_2:83481624-83481643 None:intergenic 50.0%
GGAAACACTACGCACAAACC+AGG - chr3_2:83482102-83482121 Msa0431430:intron 50.0%
ACACTACGCACAAACCAGGT+TGG - chr3_2:83482106-83482125 Msa0431430:intron 50.0%
TGTCAACTACGACGGCCATT+TGG + chr3_2:83482629-83482648 None:intergenic 50.0%
GCCGTCGTAGTTGACACAAA+AGG - chr3_2:83482633-83482652 Msa0431430:five_prime_UTR 50.0%
ACCACCGTGAAGCTGATGCT+TGG - chr3_2:83480022-83480041 Msa0431430:three_prime_UTR 55.0%
ACCAAGCATCAGCTTCACGG+TGG + chr3_2:83480026-83480045 None:intergenic 55.0%
!! GTCTCCTGATGACGGCATCA+GGG + chr3_2:83480069-83480088 None:intergenic 55.0%
!! AGTCTCCTGATGACGGCATC+AGG + chr3_2:83480070-83480089 None:intergenic 55.0%
CTTGATGTCGGATGCGGTTG+GGG - chr3_2:83481118-83481137 Msa0431430:CDS 55.0%
TTGATGTCGGATGCGGTTGG+GGG - chr3_2:83481119-83481138 Msa0431430:CDS 55.0%
GGAGCTGCAGCTGCAAAATG+TGG - chr3_2:83481408-83481427 Msa0431430:intron 55.0%
TGCTGCAGGCATAGTTCCTC+CGG + chr3_2:83481882-83481901 None:intergenic 55.0%
CTACGACGGCCATTTGGCAT+TGG + chr3_2:83482623-83482642 None:intergenic 55.0%
TGCTCCCTGATGCCGTCATC+AGG - chr3_2:83480062-83480081 Msa0431430:three_prime_UTR 60.0%
AGCTGCAGCTCCCTGACAAG+GGG + chr3_2:83481400-83481419 None:intergenic 60.0%
CAGCTGCAGCTCCCTGACAA+GGG + chr3_2:83481401-83481420 None:intergenic 60.0%
GCTGCAGCTCCCTGACAAGG+GGG + chr3_2:83481399-83481418 None:intergenic 65.0%
GCAGCTGCAGCTCCCTGACA+AGG + chr3_2:83481402-83481421 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 83479854 83482740 83479854 ID=Msa0431430;Name=Msa0431430
chr3_2 mRNA 83479854 83482740 83479854 ID=Msa0431430-mRNA-1;Parent=Msa0431430;Name=Msa0431430-mRNA-1;_AED=0.15;_eAED=0.15;_QI=129|0.87|0.77|1|0.75|0.77|9|306|345
chr3_2 exon 83479854 83480352 83479854 ID=Msa0431430-mRNA-1:exon:23354;Parent=Msa0431430-mRNA-1
chr3_2 exon 83480471 83480529 83480471 ID=Msa0431430-mRNA-1:exon:23353;Parent=Msa0431430-mRNA-1
chr3_2 exon 83480672 83480755 83480672 ID=Msa0431430-mRNA-1:exon:23352;Parent=Msa0431430-mRNA-1
chr3_2 exon 83480900 83481010 83480900 ID=Msa0431430-mRNA-1:exon:23351;Parent=Msa0431430-mRNA-1
chr3_2 exon 83481087 83481186 83481087 ID=Msa0431430-mRNA-1:exon:23350;Parent=Msa0431430-mRNA-1
chr3_2 exon 83481354 83481420 83481354 ID=Msa0431430-mRNA-1:exon:23349;Parent=Msa0431430-mRNA-1
chr3_2 exon 83481461 83481579 83481461 ID=Msa0431430-mRNA-1:exon:23348;Parent=Msa0431430-mRNA-1
chr3_2 exon 83482219 83482327 83482219 ID=Msa0431430-mRNA-1:exon:23347;Parent=Msa0431430-mRNA-1
chr3_2 exon 83482416 83482740 83482416 ID=Msa0431430-mRNA-1:exon:23346;Parent=Msa0431430-mRNA-1
chr3_2 five_prime_UTR 83482612 83482740 83482612 ID=Msa0431430-mRNA-1:five_prime_utr;Parent=Msa0431430-mRNA-1
chr3_2 CDS 83482416 83482611 83482416 ID=Msa0431430-mRNA-1:cds;Parent=Msa0431430-mRNA-1
chr3_2 CDS 83482219 83482327 83482219 ID=Msa0431430-mRNA-1:cds;Parent=Msa0431430-mRNA-1
chr3_2 CDS 83481461 83481579 83481461 ID=Msa0431430-mRNA-1:cds;Parent=Msa0431430-mRNA-1
chr3_2 CDS 83481354 83481420 83481354 ID=Msa0431430-mRNA-1:cds;Parent=Msa0431430-mRNA-1
chr3_2 CDS 83481087 83481186 83481087 ID=Msa0431430-mRNA-1:cds;Parent=Msa0431430-mRNA-1
chr3_2 CDS 83480900 83481010 83480900 ID=Msa0431430-mRNA-1:cds;Parent=Msa0431430-mRNA-1
chr3_2 CDS 83480672 83480755 83480672 ID=Msa0431430-mRNA-1:cds;Parent=Msa0431430-mRNA-1
chr3_2 CDS 83480471 83480529 83480471 ID=Msa0431430-mRNA-1:cds;Parent=Msa0431430-mRNA-1
chr3_2 CDS 83480160 83480352 83480160 ID=Msa0431430-mRNA-1:cds;Parent=Msa0431430-mRNA-1
chr3_2 three_prime_UTR 83479854 83480159 83479854 ID=Msa0431430-mRNA-1:three_prime_utr;Parent=Msa0431430-mRNA-1
Gene Sequence

>Msa0431430

ATGGAAAAGATGGAAGAGATGATGCAGCTGCCTTACAACACCACCGTGAAGCTGATGCTTGGTTCACTCGAACGCAATTTGCTCCCTGATGCCGTCATCAGGAGACTCACACGTTTGCTTTTGTCAACTCGCCTTCGTTCTTCTTACAAGCCTTCTTCTGAACTTCAGCTTTCTGATCTTCTCCAATTTGCTCACTCTTTACAAGAGATGCCTATTGCTGTCAGTACTGATGTCCCAAAATCTCAACATTACGAATTACCTACCTCTTTCTTTAAGCTGGTTCTTGGAAACAACCTCAAATACAGTTCGTGTTATTTCTCTTCTGCCTCAAAGACATTGGAAGAGGCTGAAGAAGAAATGTTGAAACTGTATTGCGAGAGATCAAACCTGAAAGATGGTCATACAGTTCTTGATGTCGGATGCGTCAGTTCCAGGGTTACAGGAATCTGCAATTCCACGACTCAAAAAGCTTTTATTGAGGAGAAATGCCGGGAGCTGCAGCTGCAAAATGTGGATATCATTGTTGCAGACATTAGTACATTTGAAATGGAAGCTTCTTATGACAGAATATTTTCCATAGAAATGTTTGAGCATATGAAGAACTATAAAGATCTTCTCAAGAAGATATCCAACTGGATGAAAGTGGATGGCCTTTTATTCGTTCATCATTTCTGCCACAAAGCATTTGCCTACCACTTTGAGGACAAAAATGAAGATGATTGGATTACAAGATACTTCTTTACCGGAGGAACTATGCCTGCAGCAAATCTACTTCTTTATTTCCAAGATGATGTTACTGTTGTCAACCATTGGCTGGTAAATGGGAAACACTACGCACAAACCAGTGAAGAGTGGCTCAAAAGAATGGATAAGAACAAGACTTCCATCAAGCCAATTATGGAATCAACATATGGCAAAGATTCAGCTACCAAATGGACTGTCTACTGGAGAACGTTTTTCATAGCTGTAGCAGAACTATTTGGATACAATAATGGTGAAGAATGGATGGTTGCACACTTTCTTTTCAAAAAGAAATAA

Protein sequence

>Msa0431430

MEKMEEMMQLPYNTTVKLMLGSLERNLLPDAVIRRLTRLLLSTRLRSSYKPSSELQLSDLLQFAHSLQEMPIAVSTDVPKSQHYELPTSFFKLVLGNNLKYSSCYFSSASKTLEEAEEEMLKLYCERSNLKDGHTVLDVGCVSSRVTGICNSTTQKAFIEEKCRELQLQNVDIIVADISTFEMEASYDRIFSIEMFEHMKNYKDLLKKISNWMKVDGLLFVHHFCHKAFAYHFEDKNEDDWITRYFFTGGTMPAANLLLYFQDDVTVVNHWLVNGKHYAQTSEEWLKRMDKNKTSIKPIMESTYGKDSATKWTVYWRTFFIAVAELFGYNNGEEWMVAHFLFKKK*