AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0990520


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0990520 MtrunA17_Chr6g0471271 96.018 226 9 0 1 226 1 226 2.84e-161 444
Msa0990520 MtrunA17_Chr1g0197271 44.944 89 47 1 129 215 5 93 1.57e-21 85.5
Msa0990520 MtrunA17_Chr1g0188891 45.882 85 44 1 133 215 9 93 4.66e-21 84.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0990520 AT1G05190.1 75.664 226 52 1 1 226 1 223 1.11e-125 355
Msa0990520 AT2G18400.1 46.067 89 46 1 129 215 5 93 4.67e-23 89.7

Find 87 sgRNAs with CRISPR-Local

Find 261 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGATACTTTGCTAGCAATTT+TGG 0.121604 6_4:-52309327 Msa0990520:three_prime_UTR
GAAAAGAAACTTCAACTTAT+TGG 0.159385 6_4:-52309915 Msa0990520:CDS
GCCATTAGAATGTGAGATTT+TGG 0.206405 6_4:-52309365 Msa0990520:three_prime_UTR
CCCTTACCTTTGTAGGGTTC+TGG 0.218928 6_4:+52309705 None:intergenic
ACCAATTGAGTTGGACTTAT+AGG 0.269146 6_4:+52309470 None:intergenic
TTTGATACCCTTACCTTTGT+AGG 0.300119 6_4:+52309698 None:intergenic
ACCTTCACTTTGAGACCTTC+AGG 0.300521 6_4:+52309813 None:intergenic
TTGCGGCTTCGATTAGAAAA+TGG 0.305439 6_4:-52309734 Msa0990520:CDS
ATCCAATGTAACCATCAAAA+TGG 0.306445 6_4:-52311815 Msa0990520:CDS
CACAAGAGATAAATTTAAAA+AGG 0.309966 6_4:+52309604 None:intergenic
TTTACAAGTGAAAGGTCCTT+TGG 0.350575 6_4:-52311782 Msa0990520:CDS
ACATTGGATGGAACGGGAAT+TGG 0.363859 6_4:+52311829 None:intergenic
CTTCGGTTATATTGTGTGTA+TGG 0.365930 6_4:+52313372 None:intergenic
GTGTATGGTAAATACTAAAT+TGG 0.370207 6_4:+52313387 None:intergenic
AACTTATCCTCGAGAAGTTA+AGG 0.378844 6_4:-52311746 Msa0990520:CDS
AACGAAGTAGTCTTGAATCT+TGG 0.379551 6_4:-52309864 Msa0990520:CDS
AGGTTGAGAGGCAAGAAGAA+GGG 0.383370 6_4:-52311726 Msa0990520:CDS
AGGAGAAAGGAAGGAAAAGC+AGG 0.383827 6_4:-52309657 Msa0990520:CDS
ACCAAAATCTCACATTCTAA+TGG 0.397514 6_4:+52309364 None:intergenic
TCAGGGATAGTCATCTTAAC+AGG 0.399302 6_4:+52309831 None:intergenic
AAACGGTAACTACTGTTTGT+TGG 0.403849 6_4:+52313418 None:intergenic
ATATCCACTAACTGTGATTC+TGG 0.421092 6_4:+52309779 None:intergenic
ATGGTTACATTGGATGGAAC+GGG 0.421850 6_4:+52311823 None:intergenic
GGATATGACAAGTCTGAGAT+TGG 0.426355 6_4:-52309762 Msa0990520:CDS
TTACAAGTGAAAGGTCCTTT+GGG 0.428296 6_4:-52311781 Msa0990520:CDS
GGTTATCGTGCTATGGTAGA+AGG 0.428439 6_4:-52309888 Msa0990520:CDS
GTAAGGCAGTCGAAACTAGA+AGG 0.432413 6_4:-52311690 Msa0990520:CDS
GTCTGAGATTGGGCAGTTTG+CGG 0.442471 6_4:-52309751 Msa0990520:CDS
TCCTATAAGTCCAACTCAAT+TGG 0.443740 6_4:-52309471 Msa0990520:three_prime_UTR
AAGGTTGAGAGGCAAGAAGA+AGG 0.452066 6_4:-52311727 Msa0990520:CDS
TGCTAGCAAAGTATCCATAA+TGG 0.453465 6_4:+52309334 None:intergenic
TAGAAAGACTACCGAATGTA+AGG 0.454853 6_4:-52311872 Msa0990520:CDS
ATATAACCGAAGTAGATAAC+AGG 0.457925 6_4:-52313361 Msa0990520:five_prime_UTR
CCTTCACTTTGAGACCTTCA+GGG 0.458041 6_4:+52309814 None:intergenic
CTTACGGACAACATAGTGAT+TGG 0.462044 6_4:-52309954 Msa0990520:CDS
GGTAAATACTAAATTGGTAA+TGG 0.462499 6_4:+52313393 None:intergenic
CTTGTAGATACCAATTGAGT+TGG 0.462755 6_4:+52309461 None:intergenic
CCTTATCCTGTTATCTACTT+CGG 0.464914 6_4:+52313355 None:intergenic
AATACCAGAATCACAGTTAG+TGG 0.468977 6_4:-52309783 Msa0990520:CDS
GAAGTTGTAAGGAGAAAGGA+AGG 0.473123 6_4:-52309666 Msa0990520:CDS
AAATCTCACATTCTAATGGC+TGG 0.473799 6_4:+52309368 None:intergenic
CTAAATTGGTAATGGTAAAA+CGG 0.476750 6_4:+52313401 None:intergenic
AATATGAAGATGAAGTTGTA+AGG 0.477736 6_4:-52309677 Msa0990520:CDS
TTGATACCCTTACCTTTGTA+GGG 0.482564 6_4:+52309699 None:intergenic
GGTTGAGAGGCAAGAAGAAG+GGG 0.482647 6_4:-52311725 Msa0990520:CDS
CCGAAGTAGATAACAGGATA+AGG 0.485746 6_4:-52313355 Msa0990520:five_prime_UTR
GTGAAGAAGAAGGGAATTCA+AGG 0.486781 6_4:+52309408 None:intergenic
CTACCGAATGTAAGGAATCT+CGG 0.487384 6_4:-52311864 Msa0990520:CDS
AATCCGAGATTCCTTACATT+CGG 0.489694 6_4:+52311861 None:intergenic
ATAGTGATTGGAGTATCTAA+AGG 0.494629 6_4:-52309942 Msa0990520:CDS
AGATGAAGTTGTAAGGAGAA+AGG 0.496476 6_4:-52309670 Msa0990520:CDS
GAATGTAAGGAATCTCGGAT+TGG 0.499577 6_4:-52311859 Msa0990520:CDS
TAACCTCTTCGTTTCAACTC+AGG 0.504297 6_4:-52313270 Msa0990520:intron
AATGTAAGGAATCTCGGATT+GGG 0.505479 6_4:-52311858 Msa0990520:CDS
TACAAGGATAATAATGTGCT+AGG 0.506660 6_4:-52309444 Msa0990520:three_prime_UTR
AAGAAACCAACATGAGTAGC+AGG 0.515650 6_4:+52311895 None:intergenic
TACTTTAAGTGTGAAGAAGA+AGG 0.519099 6_4:+52309398 None:intergenic
TGGTGTCGGTTATCGTGCTA+TGG 0.520430 6_4:-52309895 Msa0990520:CDS
TCCAGAACCCTACAAAGGTA+AGG 0.527022 6_4:-52309706 Msa0990520:CDS
AAACTTCAACTTATTGGTGT+CGG 0.535328 6_4:-52309909 Msa0990520:CDS
CTCTCAACCTTAACTTCTCG+AGG 0.537602 6_4:+52311739 None:intergenic
AGTGCTCCTGCTACTCATGT+TGG 0.537616 6_4:-52311901 Msa0990520:CDS
AGCCTTGTGGCTTGTAACAA+TGG 0.539665 6_4:-52313302 Msa0990520:exon
GATATGACAAGTCTGAGATT+GGG 0.540917 6_4:-52309761 Msa0990520:CDS
GGAGAAAGGAAGGAAAAGCA+GGG 0.545189 6_4:-52309656 Msa0990520:CDS
GGGCAATATTTACAAGTGAA+AGG 0.553289 6_4:-52311790 Msa0990520:CDS
AATGTAACCATCAAAATGGA+AGG 0.557563 6_4:-52311811 Msa0990520:CDS
CAACTCAATTGGTATCTACA+AGG 0.557843 6_4:-52309460 Msa0990520:three_prime_UTR
TTACCTTTGTAGGGTTCTGG+AGG 0.564618 6_4:+52309708 None:intergenic
GAACCTGAGTTGAAACGAAG+AGG 0.564678 6_4:+52313267 None:intergenic
CCCTGAAGGTCTCAAAGTGA+AGG 0.574522 6_4:-52309814 Msa0990520:CDS
AGGTCTCAAAGTGAAGGTAG+AGG 0.581600 6_4:-52309808 Msa0990520:CDS
GATGGTTACATTGGATGGAA+CGG 0.582292 6_4:+52311822 None:intergenic
GAAGGGCAAATCAAATGCAC+GGG 0.584831 6_4:-52311672 Msa0990520:CDS
AGAAGGGCAAATCAAATGCA+CGG 0.586479 6_4:-52311673 Msa0990520:CDS
ACTTTAAGTGTGAAGAAGAA+GGG 0.588670 6_4:+52309399 None:intergenic
CTCGAGAAGTTAAGGTTGAG+AGG 0.593903 6_4:-52311738 Msa0990520:CDS
TGAGGATACTATTTCCATAG+TGG 0.605662 6_4:+52309297 None:intergenic
ACAAGGATAATAATGTGCTA+GGG 0.619611 6_4:-52309443 Msa0990520:three_prime_UTR
TAAGGCAGTCGAAACTAGAA+GGG 0.621043 6_4:-52311689 Msa0990520:CDS
CCAGAACCCTACAAAGGTAA+GGG 0.628031 6_4:-52309705 Msa0990520:CDS
GTTAAGATGACTATCCCTGA+AGG 0.630937 6_4:-52309828 Msa0990520:CDS
ATGTAACCATCAAAATGGAA+GGG 0.634581 6_4:-52311810 Msa0990520:CDS
GCAAAGTATCCATAATGGTG+AGG 0.661413 6_4:+52309339 None:intergenic
AGCCATTGTTACAAGCCACA+AGG 0.662400 6_4:+52313300 None:intergenic
GTTAACGAAAGTTCTCCCAA+AGG 0.680959 6_4:+52311766 None:intergenic
AGACCTCCAGAACCCTACAA+AGG 0.715455 6_4:-52309711 Msa0990520:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGCTTAAAAATATATTTTTA+TGG - chr6_4:52311598-52311617 Msa0990520:intron 10.0%
!!! TTTTAAATCTTGATAATTTA+TGG - chr6_4:52312045-52312064 Msa0990520:intron 10.0%
!!! TTTAAATCTTGATAATTTAT+GGG - chr6_4:52312046-52312065 Msa0990520:intron 10.0%
!!! TTTTATGATAATTGTTATTT+AGG - chr6_4:52312070-52312089 Msa0990520:intron 10.0%
!!! TTTATGATAATTGTTATTTA+GGG - chr6_4:52312071-52312090 Msa0990520:intron 10.0%
!! AGTTATTTGTATGATTAAAA+TGG + chr6_4:52309596-52309615 None:intergenic 15.0%
!! TTTGTTCAATAATTGTTATA+TGG - chr6_4:52309638-52309657 Msa0990520:exon 15.0%
!!! TCATTTTCTCAAATTATTAT+CGG - chr6_4:52310220-52310239 Msa0990520:intron 15.0%
!!! TTTTTAATTGTTTCATAACA+TGG - chr6_4:52311124-52311143 Msa0990520:intron 15.0%
!!! TTAATTATTTTTTCTTTGAC+CGG - chr6_4:52311621-52311640 Msa0990520:intron 15.0%
!! ATAACATTTGATTCATTTAT+TGG - chr6_4:52311899-52311918 Msa0990520:CDS 15.0%
!!! AGATTTAAAATAACTTAACA+AGG + chr6_4:52312035-52312054 None:intergenic 15.0%
!! AAAAAACAAATAACTTACAA+GGG + chr6_4:52312118-52312137 None:intergenic 15.0%
!! AAAAAAACAAATAACTTACA+AGG + chr6_4:52312119-52312138 None:intergenic 15.0%
!!! TTAGAATTTTGTATTTGATT+AGG - chr6_4:52312152-52312171 Msa0990520:intron 15.0%
!!! CTAGATAATTCTTTTTTTAT+TGG - chr6_4:52312273-52312292 Msa0990520:intron 15.0%
!! AAGAGAAATAGTGAAATTAA+GGG + chr6_4:52309513-52309532 None:intergenic 20.0%
!! AAAGAGAAATAGTGAAATTA+AGG + chr6_4:52309514-52309533 None:intergenic 20.0%
!! TGGTAAATAAAACACAAAAT+GGG + chr6_4:52309698-52309717 None:intergenic 20.0%
!! ATGGTAAATAAAACACAAAA+TGG + chr6_4:52309699-52309718 None:intergenic 20.0%
!!! TTATTTCTTCAATTCTCAAT+TGG - chr6_4:52309816-52309835 Msa0990520:CDS 20.0%
!! TATTTCTTCAATTCTCAATT+GGG - chr6_4:52309817-52309836 Msa0990520:CDS 20.0%
!! TTTGACAAAATTCAATGAAA+TGG - chr6_4:52309947-52309966 Msa0990520:CDS 20.0%
!!! AAAGAAAAGAACAATTGTTT+TGG - chr6_4:52310451-52310470 Msa0990520:intron 20.0%
!!! AAGAAAAGAACAATTGTTTT+GGG - chr6_4:52310452-52310471 Msa0990520:intron 20.0%
!!! TATTGTTTTGATTGCTTTAT+TGG - chr6_4:52310479-52310498 Msa0990520:intron 20.0%
!!! AGGCTTTTATTATATGTTAT+AGG - chr6_4:52310529-52310548 Msa0990520:intron 20.0%
!!! AATTTTAAGTCATCTTTTGT+TGG - chr6_4:52310796-52310815 Msa0990520:intron 20.0%
!! AAAATAACTACTTGTAGAAA+AGG + chr6_4:52312328-52312347 None:intergenic 20.0%
!!! TTTTCAAAAAGAGAAAGAAA+TGG - chr6_4:52312353-52312372 Msa0990520:intron 20.0%
!!! GTCTATATTTTTGTATGTAT+GGG - chr6_4:52312627-52312646 Msa0990520:intron 20.0%
!! TAAAATCAATAATTTCACCT+TGG - chr6_4:52312650-52312669 Msa0990520:intron 20.0%
!!! TTGTGCAAATAAATGTTTTT+AGG - chr6_4:52312765-52312784 Msa0990520:intron 20.0%
!! CACAAGAGATAAATTTAAAA+AGG + chr6_4:52313144-52313163 None:intergenic 20.0%
!!! CTTTTTAAATTTATCTCTTG+TGG - chr6_4:52313142-52313161 Msa0990520:intron 20.0%
!!! TTTTCATTGTTTGTTAGTAA+TGG - chr6_4:52313166-52313185 Msa0990520:intron 20.0%
!!! AAATATCAATTTCTTTTGCT+CGG + chr6_4:52313206-52313225 None:intergenic 20.0%
!! TTTGTTGGATTTTTATTGGT+TGG + chr6_4:52309315-52309334 None:intergenic 25.0%
!!! ACTGTTTGTTGGATTTTTAT+TGG + chr6_4:52309319-52309338 None:intergenic 25.0%
!!! CTAAATTGGTAATGGTAAAA+CGG + chr6_4:52309347-52309366 None:intergenic 25.0%
! GGTAAATACTAAATTGGTAA+TGG + chr6_4:52309355-52309374 None:intergenic 25.0%
! GTGTATGGTAAATACTAAAT+TGG + chr6_4:52309361-52309380 None:intergenic 25.0%
! TTTATGTGTTCTCAGAAAAA+TGG + chr6_4:52309718-52309737 None:intergenic 25.0%
!!! AAAGGGTTGTAATTTTTTTC+TGG - chr6_4:52309843-52309862 Msa0990520:CDS 25.0%
!!! TTTTTTCCACATAGTTATTG+AGG - chr6_4:52310047-52310066 Msa0990520:intron 25.0%
! ACCTAATCTGATTAGTATTT+GGG + chr6_4:52310129-52310148 None:intergenic 25.0%
! AATTCAATGTAATCATGTGT+CGG + chr6_4:52310197-52310216 None:intergenic 25.0%
! AGGATACAATATAGTTAATC+AGG - chr6_4:52310630-52310649 Msa0990520:intron 25.0%
! TGACTTAAAATTGCTGAAAT+AGG + chr6_4:52310788-52310807 None:intergenic 25.0%
! TATCATTATGCTATGATCAT+TGG + chr6_4:52311868-52311887 None:intergenic 25.0%
! AACAGTTATATACTTAAGAC+AGG - chr6_4:52311986-52312005 Msa0990520:intron 25.0%
! TAGGATTATAAATACCACTT+TGG - chr6_4:52312171-52312190 Msa0990520:intron 25.0%
!!! AATCAGAAGCATTAAATACT+TGG + chr6_4:52312253-52312272 None:intergenic 25.0%
! ATGGAAGTAACTAATTGTAT+TGG - chr6_4:52312372-52312391 Msa0990520:intron 25.0%
!! AAGTAACTAATTGTATTGGT+AGG - chr6_4:52312376-52312395 Msa0990520:intron 25.0%
! TCTCTAATTGTTCATGTTTA+TGG + chr6_4:52312460-52312479 None:intergenic 25.0%
!!! GGTCTATATTTTTGTATGTA+TGG - chr6_4:52312626-52312645 Msa0990520:intron 25.0%
!!! AAATGTTTTTAGGACACTTA+CGG - chr6_4:52312775-52312794 Msa0990520:intron 25.0%
! GAAAAGAAACTTCAACTTAT+TGG - chr6_4:52312830-52312849 Msa0990520:intron 25.0%
! AATATGAAGATGAAGTTGTA+AGG - chr6_4:52313068-52313087 Msa0990520:intron 25.0%
!! TTTTTATGAAAGTCAAAGCA+TGG - chr6_4:52313249-52313268 Msa0990520:intron 25.0%
ATATAACCGAAGTAGATAAC+AGG - chr6_4:52309384-52309403 Msa0990520:three_prime_UTR 30.0%
GTTATAGAGTTCAAAAGACT+GGG + chr6_4:52309760-52309779 None:intergenic 30.0%
AGTTATAGAGTTCAAAAGAC+TGG + chr6_4:52309761-52309780 None:intergenic 30.0%
ACTGTTTCAATTTGTGAATG+TGG - chr6_4:52309778-52309797 Msa0990520:CDS 30.0%
AATTCTCAATTGGGTCAAAA+GGG - chr6_4:52309826-52309845 Msa0990520:CDS 30.0%
TTGTGGGTGTATGTTAAATT+TGG - chr6_4:52309876-52309895 Msa0990520:CDS 30.0%
ATAGTTATTGAGGTGATTGT+AGG - chr6_4:52310057-52310076 Msa0990520:intron 30.0%
CACCTAATCTGATTAGTATT+TGG + chr6_4:52310130-52310149 None:intergenic 30.0%
GGTAGTAAAACAGATAATTC+TGG - chr6_4:52310278-52310297 Msa0990520:intron 30.0%
TGAAATTATTCACGTAGAAG+TGG - chr6_4:52310302-52310321 Msa0990520:intron 30.0%
! TTAGTAAGTTGCTGTGATTT+TGG - chr6_4:52310343-52310362 Msa0990520:intron 30.0%
! TTTCTTTTACAGAGCATGTT+TGG + chr6_4:52310438-52310457 None:intergenic 30.0%
TATACAAAGATCTTGATGTG+AGG - chr6_4:52310509-52310528 Msa0990520:intron 30.0%
! ACTTTCAACTTCAGAGTTTT+AGG + chr6_4:52310597-52310616 None:intergenic 30.0%
!! TAAAACTCTGAAGTTGAAAG+TGG - chr6_4:52310596-52310615 Msa0990520:intron 30.0%
! TTTGAATCACTCGTGAATTT+TGG - chr6_4:52310663-52310682 Msa0990520:intron 30.0%
!! ATTTTGATGGTTACATTGGA+TGG + chr6_4:52310931-52310950 None:intergenic 30.0%
ATCCAATGTAACCATCAAAA+TGG - chr6_4:52310930-52310949 Msa0990520:intron 30.0%
!! TTCCATTTTGATGGTTACAT+TGG + chr6_4:52310935-52310954 None:intergenic 30.0%
AATGTAACCATCAAAATGGA+AGG - chr6_4:52310934-52310953 Msa0990520:intron 30.0%
ATGTAACCATCAAAATGGAA+GGG - chr6_4:52310935-52310954 Msa0990520:intron 30.0%
AAAAATAGATGTTGCCAATG+AGG - chr6_4:52311147-52311166 Msa0990520:intron 30.0%
CAGAGAATATAAATCCTCAT+TGG + chr6_4:52311164-52311183 None:intergenic 30.0%
!!! TTTAGTTTTCACCGATCTAA+AGG + chr6_4:52311301-52311320 None:intergenic 30.0%
TGAGTGAAATTGAGCAAATT+GGG - chr6_4:52311450-52311469 Msa0990520:intron 30.0%
AGTATTCAATTTCTCTTCTG+TGG - chr6_4:52311513-52311532 Msa0990520:intron 30.0%
!! GTGGAAATTTTTGACTGAAT+TGG - chr6_4:52311532-52311551 Msa0990520:intron 30.0%
! TAAGCATTTTGTCATTGAAG+CGG + chr6_4:52311584-52311603 None:intergenic 30.0%
! TCTGTGTCATTAGTATCAAA+TGG - chr6_4:52311780-52311799 Msa0990520:CDS 30.0%
GTATCAAATCTGGAAAACAA+AGG + chr6_4:52312200-52312219 None:intergenic 30.0%
GTTTCAATCAGTATCAAATC+TGG + chr6_4:52312210-52312229 None:intergenic 30.0%
TTGAAACAAAATGCTGTCTT+TGG - chr6_4:52312223-52312242 Msa0990520:intron 30.0%
!! TTCTCTGTTTCTATTGAATC+TGG + chr6_4:52312423-52312442 None:intergenic 30.0%
! ATAGTGATTGGAGTATCTAA+AGG - chr6_4:52312803-52312822 Msa0990520:intron 30.0%
AAACTTCAACTTATTGGTGT+CGG - chr6_4:52312836-52312855 Msa0990520:intron 30.0%
TACAAGGATAATAATGTGCT+AGG - chr6_4:52313301-52313320 Msa0990520:exon 30.0%
ACAAGGATAATAATGTGCTA+GGG - chr6_4:52313302-52313321 Msa0990520:exon 30.0%
ACTTTAAGTGTGAAGAAGAA+GGG + chr6_4:52313349-52313368 None:intergenic 30.0%
TACTTTAAGTGTGAAGAAGA+AGG + chr6_4:52313350-52313369 None:intergenic 30.0%
ACCAAAATCTCACATTCTAA+TGG + chr6_4:52313384-52313403 None:intergenic 30.0%
AAACGGTAACTACTGTTTGT+TGG + chr6_4:52309330-52309349 None:intergenic 35.0%
CTTCGGTTATATTGTGTGTA+TGG + chr6_4:52309376-52309395 None:intergenic 35.0%
CCTTATCCTGTTATCTACTT+CGG + chr6_4:52309393-52309412 None:intergenic 35.0%
! AGGAACATTTTCGCAAACAT+TGG - chr6_4:52309410-52309429 Msa0990520:three_prime_UTR 35.0%
CAATTCTCAATTGGGTCAAA+AGG - chr6_4:52309825-52309844 Msa0990520:CDS 35.0%
!! TTTCTGGTTGAAGCAATTTG+TGG - chr6_4:52309859-52309878 Msa0990520:CDS 35.0%
! TTCTGGTTGAAGCAATTTGT+GGG - chr6_4:52309860-52309879 Msa0990520:CDS 35.0%
! GAATCATGATGATGTAGTTG+TGG - chr6_4:52309906-52309925 Msa0990520:CDS 35.0%
CAATCACCTCAATAACTATG+TGG + chr6_4:52310056-52310075 None:intergenic 35.0%
GCCCAAATACTAATCAGATT+AGG - chr6_4:52310125-52310144 Msa0990520:intron 35.0%
ACACAATACGTATCAAACAC+CGG + chr6_4:52310157-52310176 None:intergenic 35.0%
TATGTGCTTCATAGCTTTCT+TGG - chr6_4:52310257-52310276 Msa0990520:intron 35.0%
GCAACTTACTAAGAAATGCA+CGG + chr6_4:52310335-52310354 None:intergenic 35.0%
TGAAAGTGGCTTCTAATTGA+AGG - chr6_4:52310610-52310629 Msa0990520:intron 35.0%
ATAGTTAATCAGGCCTGTAT+CGG - chr6_4:52310640-52310659 Msa0990520:intron 35.0%
TAGAAAGACTACCGAATGTA+AGG - chr6_4:52310873-52310892 Msa0990520:intron 35.0%
AATCCGAGATTCCTTACATT+CGG + chr6_4:52310887-52310906 None:intergenic 35.0%
AATGTAAGGAATCTCGGATT+GGG - chr6_4:52310887-52310906 Msa0990520:intron 35.0%
! ATATTGCCCTTCCATTTTGA+TGG + chr6_4:52310944-52310963 None:intergenic 35.0%
GGGCAATATTTACAAGTGAA+AGG - chr6_4:52310955-52310974 Msa0990520:intron 35.0%
TTTACAAGTGAAAGGTCCTT+TGG - chr6_4:52310963-52310982 Msa0990520:intron 35.0%
TTACAAGTGAAAGGTCCTTT+GGG - chr6_4:52310964-52310983 Msa0990520:intron 35.0%
AACTTATCCTCGAGAAGTTA+AGG - chr6_4:52310999-52311018 Msa0990520:intron 35.0%
AATGAAAAAGATCTGCACCA+TGG + chr6_4:52311242-52311261 None:intergenic 35.0%
AAACGACTTGTCCTTTAGAT+CGG - chr6_4:52311287-52311306 Msa0990520:intron 35.0%
AAGAATGAATTGTGTCAGAG+AGG + chr6_4:52311361-52311380 None:intergenic 35.0%
GTGAGTGAAATTGAGCAAAT+TGG - chr6_4:52311449-52311468 Msa0990520:intron 35.0%
GAAATTGAGCAAATTGGGAA+TGG - chr6_4:52311455-52311474 Msa0990520:intron 35.0%
TATGATCATTGGCAAGGATT+TGG + chr6_4:52311857-52311876 None:intergenic 35.0%
TTATGCTATGATCATTGGCA+AGG + chr6_4:52311863-52311882 None:intergenic 35.0%
AACTACTTGTAGAAAAGGCT+AGG + chr6_4:52312323-52312342 None:intergenic 35.0%
! GATTAGCTCTTTGGATTACT+GGG + chr6_4:52312490-52312509 None:intergenic 35.0%
CAGGACAGAACATAGTTATA+GGG + chr6_4:52312575-52312594 None:intergenic 35.0%
! TATGTTTGGATGGAGGATTT+TGG - chr6_4:52312596-52312615 Msa0990520:intron 35.0%
! AACGAAGTAGTCTTGAATCT+TGG - chr6_4:52312881-52312900 Msa0990520:intron 35.0%
AATACCAGAATCACAGTTAG+TGG - chr6_4:52312962-52312981 Msa0990520:intron 35.0%
ATATCCACTAACTGTGATTC+TGG + chr6_4:52312969-52312988 None:intergenic 35.0%
! GATATGACAAGTCTGAGATT+GGG - chr6_4:52312984-52313003 Msa0990520:intron 35.0%
TTGATACCCTTACCTTTGTA+GGG + chr6_4:52313049-52313068 None:intergenic 35.0%
TTTGATACCCTTACCTTTGT+AGG + chr6_4:52313050-52313069 None:intergenic 35.0%
AGATGAAGTTGTAAGGAGAA+AGG - chr6_4:52313075-52313094 Msa0990520:intron 35.0%
TCCTATAAGTCCAACTCAAT+TGG - chr6_4:52313274-52313293 Msa0990520:CDS 35.0%
!! ACCAATTGAGTTGGACTTAT+AGG + chr6_4:52313278-52313297 None:intergenic 35.0%
CTTGTAGATACCAATTGAGT+TGG + chr6_4:52313287-52313306 None:intergenic 35.0%
CAACTCAATTGGTATCTACA+AGG - chr6_4:52313285-52313304 Msa0990520:CDS 35.0%
AAATCTCACATTCTAATGGC+TGG + chr6_4:52313380-52313399 None:intergenic 35.0%
! GCCATTAGAATGTGAGATTT+TGG - chr6_4:52313380-52313399 Msa0990520:five_prime_UTR 35.0%
! TGCTAGCAAAGTATCCATAA+TGG + chr6_4:52313414-52313433 None:intergenic 35.0%
! GGATACTTTGCTAGCAATTT+TGG - chr6_4:52313418-52313437 Msa0990520:five_prime_UTR 35.0%
!!! ATTTTGGTGTCTTACCACTA+TGG - chr6_4:52313434-52313453 Msa0990520:five_prime_UTR 35.0%
CCGAAGTAGATAACAGGATA+AGG - chr6_4:52309390-52309409 Msa0990520:three_prime_UTR 40.0%
TAACCTCTTCGTTTCAACTC+AGG - chr6_4:52309475-52309494 Msa0990520:three_prime_UTR 40.0%
TAATCAGATTAGGTGTGTCC+CGG - chr6_4:52310135-52310154 Msa0990520:intron 40.0%
CACAATACGTATCAAACACC+GGG + chr6_4:52310156-52310175 None:intergenic 40.0%
ATGAAGCACATACTCAGACA+CGG + chr6_4:52310249-52310268 None:intergenic 40.0%
AAGAAACCAACATGAGTAGC+AGG + chr6_4:52310853-52310872 None:intergenic 40.0%
CTACCGAATGTAAGGAATCT+CGG - chr6_4:52310881-52310900 Msa0990520:intron 40.0%
GAATGTAAGGAATCTCGGAT+TGG - chr6_4:52310886-52310905 Msa0990520:intron 40.0%
ATGGTTACATTGGATGGAAC+GGG + chr6_4:52310925-52310944 None:intergenic 40.0%
GATGGTTACATTGGATGGAA+CGG + chr6_4:52310926-52310945 None:intergenic 40.0%
GTTAACGAAAGTTCTCCCAA+AGG + chr6_4:52310982-52311001 None:intergenic 40.0%
!! GCAAGAAGAAGGGGTTTTAA+AGG - chr6_4:52311029-52311048 Msa0990520:intron 40.0%
!!! AGGGGTTTTAAAGGTCAGTA+AGG - chr6_4:52311038-52311057 Msa0990520:intron 40.0%
TAAGGCAGTCGAAACTAGAA+GGG - chr6_4:52311056-52311075 Msa0990520:intron 40.0%
AGAAGGGCAAATCAAATGCA+CGG - chr6_4:52311072-52311091 Msa0990520:intron 40.0%
CAGCCATTAGATGAAATCCA+TGG - chr6_4:52311222-52311241 Msa0990520:intron 40.0%
GCACCATGGATTTCATCTAA+TGG + chr6_4:52311228-52311247 None:intergenic 40.0%
!! GTCGTTTTGAGCAACTAGAA+TGG + chr6_4:52311274-52311293 None:intergenic 40.0%
CAACTGTCAGGAGTTGAAAT+TGG + chr6_4:52311430-52311449 None:intergenic 40.0%
CAATTTCACTCACAACTGTC+AGG + chr6_4:52311442-52311461 None:intergenic 40.0%
!! GGAATGGATTGCAAGTACTA+GGG - chr6_4:52311471-52311490 Msa0990520:intron 40.0%
AGTACTAGGGACAGTGAAAT+TGG - chr6_4:52311484-52311503 Msa0990520:intron 40.0%
! CATTTTGTCATTGAAGCGGT+GGG + chr6_4:52311580-52311599 None:intergenic 40.0%
CTCATCTTAGAGATATGCTC+CGG + chr6_4:52311643-52311662 None:intergenic 40.0%
! TTTTCACTACGCTGTGGTTT+GGG - chr6_4:52311728-52311747 Msa0990520:CDS 40.0%
ATGTAGGATATCTCTGACTG+TGG - chr6_4:52311826-52311845 Msa0990520:CDS 40.0%
GAAAACAAAGGTAGCCAAAG+TGG + chr6_4:52312188-52312207 None:intergenic 40.0%
GGAAAATAACATGTACAGCG+AGG + chr6_4:52312302-52312321 None:intergenic 40.0%
!! GGATTAGCTCTTTGGATTAC+TGG + chr6_4:52312491-52312510 None:intergenic 40.0%
!! AGAGAGAGTGTCATCTTTCA+CGG + chr6_4:52312513-52312532 None:intergenic 40.0%
CTATCAAGGGAGAGCTTATT+AGG + chr6_4:52312546-52312565 None:intergenic 40.0%
TATAGGGAGAGAGCTATCAA+GGG + chr6_4:52312559-52312578 None:intergenic 40.0%
TTATAGGGAGAGAGCTATCA+AGG + chr6_4:52312560-52312579 None:intergenic 40.0%
CCAGGACAGAACATAGTTAT+AGG + chr6_4:52312576-52312595 None:intergenic 40.0%
CCTATAACTATGTTCTGTCC+TGG - chr6_4:52312573-52312592 Msa0990520:intron 40.0%
ATGTTCTGTCCTGGTATGTT+TGG - chr6_4:52312582-52312601 Msa0990520:intron 40.0%
CTTACGGACAACATAGTGAT+TGG - chr6_4:52312791-52312810 Msa0990520:intron 40.0%
TCAGGGATAGTCATCTTAAC+AGG + chr6_4:52312917-52312936 None:intergenic 40.0%
GTTAAGATGACTATCCCTGA+AGG - chr6_4:52312917-52312936 Msa0990520:intron 40.0%
! GGATATGACAAGTCTGAGAT+TGG - chr6_4:52312983-52313002 Msa0990520:intron 40.0%
TTGCGGCTTCGATTAGAAAA+TGG - chr6_4:52313011-52313030 Msa0990520:intron 40.0%
GAAGTTGTAAGGAGAAAGGA+AGG - chr6_4:52313079-52313098 Msa0990520:intron 40.0%
GTGAAGAAGAAGGGAATTCA+AGG + chr6_4:52313340-52313359 None:intergenic 40.0%
!!! TTTTGGTGTCCTCACCATTA+TGG - chr6_4:52313397-52313416 Msa0990520:five_prime_UTR 40.0%
! GCAAAGTATCCATAATGGTG+AGG + chr6_4:52313409-52313428 None:intergenic 40.0%
TGGCAAAAAGCAAAGCCTTG+TGG - chr6_4:52309430-52309449 Msa0990520:three_prime_UTR 45.0%
! AGCCTTGTGGCTTGTAACAA+TGG - chr6_4:52309443-52309462 Msa0990520:three_prime_UTR 45.0%
AGCCATTGTTACAAGCCACA+AGG + chr6_4:52309448-52309467 None:intergenic 45.0%
! GAACCTGAGTTGAAACGAAG+AGG + chr6_4:52309481-52309500 None:intergenic 45.0%
CGAGTGATTCAAACCGATAC+AGG + chr6_4:52310656-52310675 None:intergenic 45.0%
ACATTGGATGGAACGGGAAT+TGG + chr6_4:52310919-52310938 None:intergenic 45.0%
CTCTCAACCTTAACTTCTCG+AGG + chr6_4:52311009-52311028 None:intergenic 45.0%
CTCGAGAAGTTAAGGTTGAG+AGG - chr6_4:52311007-52311026 Msa0990520:intron 45.0%
AAGGTTGAGAGGCAAGAAGA+AGG - chr6_4:52311018-52311037 Msa0990520:intron 45.0%
AGGTTGAGAGGCAAGAAGAA+GGG - chr6_4:52311019-52311038 Msa0990520:intron 45.0%
GTAAGGCAGTCGAAACTAGA+AGG - chr6_4:52311055-52311074 Msa0990520:intron 45.0%
GAAGGGCAAATCAAATGCAC+GGG - chr6_4:52311073-52311092 Msa0990520:intron 45.0%
! ATCAAATGCACGGGCTTTTC+AGG - chr6_4:52311082-52311101 Msa0990520:intron 45.0%
GGAGAAAGGGGAAAGATTGA+TGG + chr6_4:52311329-52311348 None:intergenic 45.0%
AGGTCGAAAAAGGGAGAAAG+GGG + chr6_4:52311341-52311360 None:intergenic 45.0%
GAGGTCGAAAAAGGGAGAAA+GGG + chr6_4:52311342-52311361 None:intergenic 45.0%
AGAGGTCGAAAAAGGGAGAA+AGG + chr6_4:52311343-52311362 None:intergenic 45.0%
GTGTCAGAGAGGTCGAAAAA+GGG + chr6_4:52311350-52311369 None:intergenic 45.0%
TGTGTCAGAGAGGTCGAAAA+AGG + chr6_4:52311351-52311370 None:intergenic 45.0%
TTCATTCTTGTCGTCCTCCA+TGG - chr6_4:52311372-52311391 Msa0990520:intron 45.0%
GTGAGTGTGTTTGCAATCCA+TGG + chr6_4:52311404-52311423 None:intergenic 45.0%
!! GGGAATGGATTGCAAGTACT+AGG - chr6_4:52311470-52311489 Msa0990520:intron 45.0%
! GCATTTTGTCATTGAAGCGG+TGG + chr6_4:52311581-52311600 None:intergenic 45.0%
!! CGGAGCATATCTCTAAGATG+AGG - chr6_4:52311641-52311660 Msa0990520:intron 45.0%
TTTAGAAGACGAGTACGCGT+TGG - chr6_4:52311691-52311710 Msa0990520:CDS 45.0%
TACGCGTTGGAGACGAATAA+TGG - chr6_4:52311704-52311723 Msa0990520:CDS 45.0%
ACGCGTTGGAGACGAATAAT+GGG - chr6_4:52311705-52311724 Msa0990520:CDS 45.0%
!! AATGGGTTTTCACTACGCTG+TGG - chr6_4:52311722-52311741 Msa0990520:CDS 45.0%
! GTTTTCACTACGCTGTGGTT+TGG - chr6_4:52311727-52311746 Msa0990520:CDS 45.0%
TGACTTGACAGCGTGAATGT+AGG - chr6_4:52311810-52311829 Msa0990520:CDS 45.0%
CAGGAAGAAGTGATGCAGAA+TGG - chr6_4:52312005-52312024 Msa0990520:intron 45.0%
TAGGCACCACTGAATTTGAC+AGG - chr6_4:52312395-52312414 Msa0990520:intron 45.0%
CTGGTTCCTGTCAAATTCAG+TGG + chr6_4:52312404-52312423 None:intergenic 45.0%
!! CTTTCACGGGATTAGCTCTT+TGG + chr6_4:52312499-52312518 None:intergenic 45.0%
!! GAGAGAGTGTCATCTTTCAC+GGG + chr6_4:52312512-52312531 None:intergenic 45.0%
GAGAGCTTATTAGGTAGGTC+GGG + chr6_4:52312537-52312556 None:intergenic 45.0%
GGAGAGCTTATTAGGTAGGT+CGG + chr6_4:52312538-52312557 None:intergenic 45.0%
CAAGGGAGAGCTTATTAGGT+AGG + chr6_4:52312542-52312561 None:intergenic 45.0%
TCTGTCCTGGTATGTTTGGA+TGG - chr6_4:52312586-52312605 Msa0990520:intron 45.0%
ATCCTCCATCCAAACATACC+AGG + chr6_4:52312594-52312613 None:intergenic 45.0%
! GTTTGGATGGAGGATTTTGG+AGG - chr6_4:52312599-52312618 Msa0990520:intron 45.0%
!! ATGGAGGATTTTGGAGGACT+AGG - chr6_4:52312605-52312624 Msa0990520:intron 45.0%
TGTGATGCAGTGCTTAACCA+AGG + chr6_4:52312670-52312689 None:intergenic 45.0%
GGTTATCGTGCTATGGTAGA+AGG - chr6_4:52312857-52312876 Msa0990520:intron 45.0%
!! CCTTCACTTTGAGACCTTCA+GGG + chr6_4:52312934-52312953 None:intergenic 45.0%
!! ACCTTCACTTTGAGACCTTC+AGG + chr6_4:52312935-52312954 None:intergenic 45.0%
AGGTCTCAAAGTGAAGGTAG+AGG - chr6_4:52312937-52312956 Msa0990520:intron 45.0%
! TTACCTTTGTAGGGTTCTGG+AGG + chr6_4:52313040-52313059 None:intergenic 45.0%
TCCAGAACCCTACAAAGGTA+AGG - chr6_4:52313039-52313058 Msa0990520:intron 45.0%
CCAGAACCCTACAAAGGTAA+GGG - chr6_4:52313040-52313059 Msa0990520:intron 45.0%
AGGAGAAAGGAAGGAAAAGC+AGG - chr6_4:52313088-52313107 Msa0990520:intron 45.0%
GGAGAAAGGAAGGAAAAGCA+GGG - chr6_4:52313089-52313108 Msa0990520:intron 45.0%
!! ATCATGTGTCGGTGTCGTGT+TGG + chr6_4:52310186-52310205 None:intergenic 50.0%
AGTGCTCCTGCTACTCATGT+TGG - chr6_4:52310844-52310863 Msa0990520:intron 50.0%
GGTTGAGAGGCAAGAAGAAG+GGG - chr6_4:52311020-52311039 Msa0990520:intron 50.0%
ATCCATGGCAATTGCCATGG+AGG + chr6_4:52311389-52311408 None:intergenic 50.0%
GCAATCCATGGCAATTGCCA+TGG + chr6_4:52311392-52311411 None:intergenic 50.0%
GTCCTGGTATGTTTGGATGG+AGG - chr6_4:52312589-52312608 Msa0990520:intron 50.0%
!! TGGTGTCGGTTATCGTGCTA+TGG - chr6_4:52312850-52312869 Msa0990520:intron 50.0%
CCCTGAAGGTCTCAAAGTGA+AGG - chr6_4:52312931-52312950 Msa0990520:intron 50.0%
! GTCTGAGATTGGGCAGTTTG+CGG - chr6_4:52312994-52313013 Msa0990520:intron 50.0%
AGACCTCCAGAACCCTACAA+AGG - chr6_4:52313034-52313053 Msa0990520:intron 50.0%
CCCTTACCTTTGTAGGGTTC+TGG + chr6_4:52313043-52313062 None:intergenic 50.0%
GTCCTCCATGGCAATTGCCA+TGG - chr6_4:52311384-52311403 Msa0990520:intron 55.0%
CGGTGGGAACGAGTTCAAAG+AGG + chr6_4:52311564-52311583 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 52309298 52313469 52309298 ID=Msa0990520;Name=Msa0990520
chr6_4 mRNA 52309298 52313469 52309298 ID=Msa0990520-mRNA-1;Parent=Msa0990520;Name=Msa0990520-mRNA-1;_AED=0.11;_eAED=0.11;_QI=164|1|1|1|1|1|3|346|226
chr6_4 exon 52309298 52309980 52309298 ID=Msa0990520-mRNA-1:exon:10977;Parent=Msa0990520-mRNA-1
chr6_4 exon 52311664 52311972 52311664 ID=Msa0990520-mRNA-1:exon:10976;Parent=Msa0990520-mRNA-1
chr6_4 exon 52313271 52313469 52313271 ID=Msa0990520-mRNA-1:exon:10975;Parent=Msa0990520-mRNA-1
chr6_4 five_prime_UTR 52313306 52313469 52313306 ID=Msa0990520-mRNA-1:five_prime_utr;Parent=Msa0990520-mRNA-1
chr6_4 CDS 52313271 52313305 52313271 ID=Msa0990520-mRNA-1:cds;Parent=Msa0990520-mRNA-1
chr6_4 CDS 52311664 52311972 52311664 ID=Msa0990520-mRNA-1:cds;Parent=Msa0990520-mRNA-1
chr6_4 CDS 52309644 52309980 52309644 ID=Msa0990520-mRNA-1:cds;Parent=Msa0990520-mRNA-1
chr6_4 three_prime_UTR 52309298 52309643 52309298 ID=Msa0990520-mRNA-1:three_prime_utr;Parent=Msa0990520-mRNA-1
Gene Sequence

>Msa0990520

ATGGCTTCTTCAGTAACCTCTTCGTTTCAACTCAGCAATTTTAAGTCATCTTTTGTTGGCGAGAGAAGTAGACTCAGAGTTGCAAGTGCTCCTGCTACTCATGTTGGTTTCTTTAGAAAGACTACCGAATGTAAGGAATCTCGGATTGGGAAACAACCAATTCCCGTTCCATCCAATGTAACCATCAAAATGGAAGGGCAATATTTACAAGTGAAAGGTCCTTTGGGAGAACTTTCGTTAACTTATCCTCGAGAAGTTAAGGTTGAGAGGCAAGAAGAAGGGGTTTTAAAGGTCAGTAAGGCAGTCGAAACTAGAAGGGCAAATCAAATGCACGGGCTTTTCAGGACACTTACGGACAACATAGTGATTGGAGTATCTAAAGGTTTTGAAAAGAAACTTCAACTTATTGGTGTCGGTTATCGTGCTATGGTAGAAGGAAACGAAGTAGTCTTGAATCTTGGATTTTCTCATCCTGTTAAGATGACTATCCCTGAAGGTCTCAAAGTGAAGGTAGAGGAAAATACCAGAATCACAGTTAGTGGATATGACAAGTCTGAGATTGGGCAGTTTGCGGCTTCGATTAGAAAATGGAGACCTCCAGAACCCTACAAAGGTAAGGGTATCAAATATGAAGATGAAGTTGTAAGGAGAAAGGAAGGAAAAGCAGGGAAGAAGAAGTGA

Protein sequence

>Msa0990520

MASSVTSSFQLSNFKSSFVGERSRLRVASAPATHVGFFRKTTECKESRIGKQPIPVPSNVTIKMEGQYLQVKGPLGELSLTYPREVKVERQEEGVLKVSKAVETRRANQMHGLFRTLTDNIVIGVSKGFEKKLQLIGVGYRAMVEGNEVVLNLGFSHPVKMTIPEGLKVKVEENTRITVSGYDKSEIGQFAASIRKWRPPEPYKGKGIKYEDEVVRRKEGKAGKKK*