Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0238940 | XP_003594164.1 | 93.294 | 343 | 21 | 2 | 1 | 342 | 1 | 342 | 0.0 | 664 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0238940 | sp|Q56X52|AOX4_ARATH | 74.917 | 303 | 63 | 4 | 41 | 336 | 55 | 351 | 1.40e-172 | 486 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0238940 | Q2HTI6 | 93.294 | 343 | 21 | 2 | 1 | 342 | 1 | 342 | 0.0 | 664 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0035980 | Msa0238940 | 0.842929 | 1.914627e-58 | -8.615850e-47 |
| Msa0036060 | Msa0238940 | 0.848443 | 6.108647e-60 | -8.615850e-47 |
| Msa0083980 | Msa0238940 | 0.802867 | 4.575166e-49 | -8.615850e-47 |
| Msa0197180 | Msa0238940 | 0.974646 | 1.597391e-138 | -8.615850e-47 |
| Msa0238940 | Msa0308770 | 0.929967 | 3.245478e-93 | -8.615850e-47 |
| Msa0238940 | Msa0316750 | 0.969961 | 6.743973e-131 | -8.615850e-47 |
| Msa0238940 | Msa0376340 | 0.878101 | 3.687124e-69 | -8.615850e-47 |
| Msa0238940 | Msa0381410 | 0.806729 | 7.141845e-50 | -8.615850e-47 |
| Msa0238940 | Msa0424780 | 0.877263 | 7.227670e-69 | -8.615850e-47 |
| Msa0238940 | Msa0435000 | 0.803370 | 3.601267e-49 | -8.615850e-47 |
| Msa0238940 | Msa0516160 | 0.877039 | 8.647248e-69 | -8.615850e-47 |
| Msa0238940 | Msa0579350 | 0.802344 | 5.866316e-49 | -8.615850e-47 |
| Msa0238940 | Msa0629440 | -0.837541 | 4.890188e-57 | -8.615850e-47 |
| Msa0238940 | Msa0644770 | -0.806711 | 7.203355e-50 | -8.615850e-47 |
| Msa0238940 | Msa0667070 | -0.821388 | 4.147175e-53 | -8.615850e-47 |
| Msa0238940 | Msa0713210 | 0.807939 | 3.955708e-50 | -8.615850e-47 |
| Msa0238940 | Msa0713220 | 0.826421 | 2.737672e-54 | -8.615850e-47 |
| Msa0238940 | Msa0713230 | 0.866836 | 2.130879e-65 | -8.615850e-47 |
| Msa0238940 | Msa0754350 | 0.800487 | 1.408144e-48 | -8.615850e-47 |
| Msa0238940 | Msa0755080 | 0.885669 | 6.662968e-72 | -8.615850e-47 |
| Msa0238940 | Msa0796950 | 0.852626 | 4.079047e-61 | -8.615850e-47 |
| Msa0238940 | Msa0797000 | 0.813630 | 2.322934e-51 | -8.615850e-47 |
| Msa0238940 | Msa0834450 | 0.872114 | 4.077281e-67 | -8.615850e-47 |
| Msa0238940 | Msa0834460 | 0.801082 | 1.064815e-48 | -8.615850e-47 |
| Msa0238940 | Msa0982590 | 0.801987 | 6.946978e-49 | -8.615850e-47 |
| Msa0238940 | Msa1075590 | 0.800723 | 1.260919e-48 | -8.615850e-47 |
| Msa0238940 | Msa1137090 | 0.808102 | 3.652620e-50 | -8.615850e-47 |
| Msa0238940 | Msa1174870 | 0.803845 | 2.870068e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0238940 | MtrunA17_Chr2g0289361 | 93.294 | 343 | 21 | 2 | 1 | 342 | 1 | 342 | 0.0 | 664 |
| Msa0238940 | MtrunA17_Chr4g0050421 | 26.667 | 180 | 111 | 3 | 109 | 287 | 159 | 318 | 3.82e-14 | 72.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0238940 | AT4G22260.1 | 74.917 | 303 | 63 | 4 | 41 | 336 | 55 | 351 | 1.42e-173 | 486 |
| Msa0238940 | AT5G64210.1 | 26.984 | 189 | 113 | 4 | 104 | 287 | 158 | 326 | 1.72e-13 | 70.9 |
Find 95 sgRNAs with CRISPR-Local
Find 310 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCAGTAAATAGTTGAAATT+TGG | 0.175229 | 2_2:+12815180 | Msa0238940:three_prime_UTR |
| GGAGGTGACTTGTATTTATT+TGG | 0.198866 | 2_2:+12814338 | Msa0238940:CDS |
| ATTGCAAGAGTCCCTTATTT+TGG | 0.214997 | 2_2:+12811262 | Msa0238940:CDS |
| AATGCATCATTTGCTCATTA+TGG | 0.218823 | 2_2:+12812948 | Msa0238940:CDS |
| TCGACTAGTGCTTGGGAAAA+AGG | 0.235716 | 2_2:+12811042 | Msa0238940:CDS |
| ATCGTAGGCCTTCTAGTATT+TGG | 0.244860 | 2_2:-12814468 | None:intergenic |
| AAATAGAAGTTACCAAAATA+AGG | 0.254084 | 2_2:-12811274 | None:intergenic |
| TTTGTTGTAGTTTGGCATTT+AGG | 0.271545 | 2_2:-12810646 | None:intergenic |
| ATGAGGGCTTGCCAAACTTA+TGG | 0.280986 | 2_2:+12814920 | Msa0238940:CDS |
| TAATACTTACATGCCATTCT+TGG | 0.285610 | 2_2:-12813423 | None:intergenic |
| CTCCACATGTATGAGAGTTT+TGG | 0.303801 | 2_2:+12812871 | Msa0238940:CDS |
| AAAGAAACGTTAGTTGTGTT+TGG | 0.318743 | 2_2:-12810702 | None:intergenic |
| ATGTCTTACTTCACCTTAGC+TGG | 0.330534 | 2_2:-12815061 | None:intergenic |
| GGTCTATGGTTGCAGGAACT+TGG | 0.368546 | 2_2:+12813312 | Msa0238940:intron |
| TATTTATTTGTTTAAGTGAC+TGG | 0.373134 | 2_2:-12810733 | None:intergenic |
| ACCGGAGGTTCCCATAAGTT+TGG | 0.376142 | 2_2:-12814931 | None:intergenic |
| TGAGGGCTTGCCAAACTTAT+GGG | 0.400759 | 2_2:+12814921 | Msa0238940:CDS |
| GCCGTCGCCGCCATGATGTT+TGG | 0.401650 | 2_2:-12810793 | None:intergenic |
| TTTGGCATTTAGGACCATTC+CGG | 0.402483 | 2_2:-12810636 | None:intergenic |
| TTAGTTGTGTTTGGATTGTA+TGG | 0.402606 | 2_2:-12810693 | None:intergenic |
| AATACTTACATGCCATTCTT+GGG | 0.424208 | 2_2:-12813422 | None:intergenic |
| CAGATGAATTTCAAACCTCC+AGG | 0.431269 | 2_2:+12814442 | Msa0238940:intron |
| TTTGTTTAAGTGACTGGAAA+GGG | 0.441274 | 2_2:-12810727 | None:intergenic |
| TATGGTATTTGTCGTTTGGC+GGG | 0.441298 | 2_2:-12810670 | None:intergenic |
| ATGGTATGGTATTTGTCGTT+TGG | 0.443914 | 2_2:-12810674 | None:intergenic |
| CCAGGGTTCCAAATACTAGA+AGG | 0.451414 | 2_2:+12814460 | Msa0238940:CDS |
| AATAGAAGTTACCAAAATAA+GGG | 0.455664 | 2_2:-12811273 | None:intergenic |
| GTATGGTATTTGTCGTTTGG+CGG | 0.459905 | 2_2:-12810671 | None:intergenic |
| GTTGCTGTGAATTATTATAC+AGG | 0.462624 | 2_2:+12814317 | Msa0238940:CDS |
| TACCGTGAGAAAGATATTAA+CGG | 0.462964 | 2_2:-12811085 | None:intergenic |
| GGAATGCTTGGTGGTTTGAC+CGG | 0.468487 | 2_2:+12813337 | Msa0238940:CDS |
| AACTTATGACAAATTTATCA+AGG | 0.473190 | 2_2:+12813777 | Msa0238940:CDS |
| TACTTCATCGACTAGTGCTT+GGG | 0.482403 | 2_2:+12811035 | Msa0238940:CDS |
| ATGATGTTTGGTGGTGGAAA+TGG | 0.485932 | 2_2:-12810781 | None:intergenic |
| ATACTTCATCGACTAGTGCT+TGG | 0.489002 | 2_2:+12811034 | Msa0238940:CDS |
| GAAGACGATAACGGATTTGA+GGG | 0.491989 | 2_2:-12810885 | None:intergenic |
| GGAAGACGATAACGGATTTG+AGG | 0.492911 | 2_2:-12810886 | None:intergenic |
| CAATATGTTGAGCAAGAAAC+CGG | 0.493032 | 2_2:-12813356 | None:intergenic |
| TTCCGGCGACTATTAGTACT+TGG | 0.493627 | 2_2:-12810619 | None:intergenic |
| CTATGGTTGCAGGAACTTGG+AGG | 0.498887 | 2_2:+12813315 | Msa0238940:intron |
| AGGAACTTGGAGGGAATGCT+TGG | 0.505846 | 2_2:+12813325 | Msa0238940:intron |
| ATGATGGTCCGGCACGGTAG+TGG | 0.510689 | 2_2:-12810572 | None:intergenic |
| AACTTGGAGGGAATGCTTGG+TGG | 0.513318 | 2_2:+12813328 | Msa0238940:CDS |
| TGTGTTTGGATTGTATGGTA+TGG | 0.523907 | 2_2:-12810688 | None:intergenic |
| ATGCATTTCATTCCAGCTCT+CGG | 0.525237 | 2_2:-12812932 | None:intergenic |
| GCCAAACTTATGGGAACCTC+CGG | 0.533794 | 2_2:+12814930 | Msa0238940:CDS |
| GATTTGTTGAGGTGTGAGGT+TGG | 0.533926 | 2_2:-12810838 | None:intergenic |
| TAATAATTCACAGCAACCTC+AGG | 0.534240 | 2_2:-12814311 | None:intergenic |
| ATTCTGTGTGAATGATGGTC+CGG | 0.538380 | 2_2:-12810583 | None:intergenic |
| GTATTTAATAAGCCCAAGAA+TGG | 0.539687 | 2_2:+12813410 | Msa0238940:CDS |
| GACGTAGAGGAAGACGATAA+CGG | 0.540292 | 2_2:-12810894 | None:intergenic |
| CCTTCTAGTATTTGGAACCC+TGG | 0.541899 | 2_2:-12814460 | None:intergenic |
| ACAATTGAAGCAGGCTGTGA+AGG | 0.550083 | 2_2:+12815001 | Msa0238940:CDS |
| TTCACAGCAACCTCAGGAGC+CGG | 0.550908 | 2_2:-12814305 | None:intergenic |
| TCAGTCTGTACAATTGAAGC+AGG | 0.558599 | 2_2:+12814992 | Msa0238940:CDS |
| CATGTGGAGAATTGACATAA+AGG | 0.561610 | 2_2:-12812857 | None:intergenic |
| ATCCGTTAATATCTTTCTCA+CGG | 0.562693 | 2_2:+12811083 | Msa0238940:CDS |
| ATGTTTGGTGGTGGAAATGG+TGG | 0.563886 | 2_2:-12810778 | None:intergenic |
| ATTTCCACCACCAAACATCA+TGG | 0.564505 | 2_2:+12810783 | Msa0238940:exon |
| AGCATATTCTGTGTGAATGA+TGG | 0.566237 | 2_2:-12810588 | None:intergenic |
| ATTTGTTTAAGTGACTGGAA+AGG | 0.568786 | 2_2:-12810728 | None:intergenic |
| GCCGCCATGATGTTTGGTGG+TGG | 0.573811 | 2_2:-12810787 | None:intergenic |
| CTGCATATGAATGAGGCGAC+CGG | 0.574364 | 2_2:-12814949 | None:intergenic |
| CTGAACATTGTAAGACAATG+AGG | 0.580218 | 2_2:+12814903 | Msa0238940:CDS |
| ACCAAACATCATGGCGGCGA+CGG | 0.582086 | 2_2:+12810792 | Msa0238940:exon |
| TGTTACTTCTAATCCAGCTA+AGG | 0.582853 | 2_2:+12815048 | Msa0238940:CDS |
| TGATGATTTGTTGAGGTGTG+AGG | 0.589989 | 2_2:-12810842 | None:intergenic |
| GACAAATTTATCAAGGAACA+AGG | 0.592572 | 2_2:+12813784 | Msa0238940:CDS |
| AGATGAATTTCAAACCTCCA+GGG | 0.596112 | 2_2:+12814443 | Msa0238940:intron |
| TCTGCATCTGCATATGAATG+AGG | 0.596959 | 2_2:-12814956 | None:intergenic |
| ATCGTGATAGAAATTATGCA+AGG | 0.599946 | 2_2:+12811221 | Msa0238940:CDS |
| AGTAACGGAATCTAAAGGAG+AGG | 0.604736 | 2_2:-12810989 | None:intergenic |
| CTCATACACCCTCATTGTAG+AGG | 0.605748 | 2_2:-12815211 | None:intergenic |
| AGTACTAATAGTCGCCGGAA+TGG | 0.608979 | 2_2:+12810622 | Msa0238940:five_prime_UTR |
| TATGGTTGCAGGAACTTGGA+GGG | 0.615759 | 2_2:+12813316 | Msa0238940:intron |
| TCTAGTATTTGGAACCCTGG+AGG | 0.616493 | 2_2:-12814457 | None:intergenic |
| GCTGTGAATTATTATACAGG+AGG | 0.620648 | 2_2:+12814320 | Msa0238940:CDS |
| ATTTCTATATCATACTGTAG+AGG | 0.622575 | 2_2:-12815147 | None:intergenic |
| GTCGCCGCCATGATGTTTGG+TGG | 0.627726 | 2_2:-12810790 | None:intergenic |
| AACCAAAACTCTCATACATG+TGG | 0.629436 | 2_2:-12812873 | None:intergenic |
| GATGAGATTCCTCTACAATG+AGG | 0.633764 | 2_2:+12815202 | Msa0238940:three_prime_UTR |
| CATATGAATGAGGCGACCGG+AGG | 0.633813 | 2_2:-12814946 | None:intergenic |
| ATGAGATTCCTCTACAATGA+GGG | 0.634949 | 2_2:+12815203 | Msa0238940:three_prime_UTR |
| AATACTAGAAGGCCTACGAT+AGG | 0.636700 | 2_2:+12814471 | Msa0238940:CDS |
| TACCAAGTACTAATAGTCGC+CGG | 0.643897 | 2_2:+12810617 | Msa0238940:five_prime_UTR |
| ATGATGATGATGATTTGTTG+AGG | 0.646145 | 2_2:-12810849 | None:intergenic |
| TTTCAAGACATACCTATCGT+AGG | 0.654868 | 2_2:-12814483 | None:intergenic |
| AGCTAAGGTGAAGTAAGACA+TGG | 0.655418 | 2_2:+12815063 | Msa0238940:exon |
| TGAACATTGTAAGACAATGA+GGG | 0.657949 | 2_2:+12814904 | Msa0238940:CDS |
| GCACGAATTGAAAGACGTAG+AGG | 0.662575 | 2_2:-12810907 | None:intergenic |
| TCATTCATATGCAGATGCAG+AGG | 0.664876 | 2_2:+12814958 | Msa0238940:CDS |
| AAGAAAAGAAATAGAATACG+AGG | 0.667273 | 2_2:+12815118 | Msa0238940:three_prime_UTR |
| GTGTGAATGATGGTCCGGCA+CGG | 0.676050 | 2_2:-12810578 | None:intergenic |
| TCCACCACCAAACATCATGG+CGG | 0.747722 | 2_2:+12810786 | Msa0238940:exon |
| AAATTTATCAAGGAACAAGG+AGG | 0.753148 | 2_2:+12813787 | Msa0238940:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTATTTTTTTGAAAACT+CGG | - | chr2_2:12811631-12811650 | None:intergenic | 10.0% |
| !! | TTAACAGATTAATATTTGAA+AGG | - | chr2_2:12811317-12811336 | None:intergenic | 15.0% |
| !! | CTTAATAAAATAAACTACAT+GGG | - | chr2_2:12812431-12812450 | None:intergenic | 15.0% |
| !! | ACTTAATAAAATAAACTACA+TGG | - | chr2_2:12812432-12812451 | None:intergenic | 15.0% |
| !! | TCTGATATAAAAAGAAAAAA+GGG | - | chr2_2:12812621-12812640 | None:intergenic | 15.0% |
| !! | TTCTGATATAAAAAGAAAAA+AGG | - | chr2_2:12812622-12812641 | None:intergenic | 15.0% |
| !!! | TTTTTATATCAGAAAAGAAA+GGG | + | chr2_2:12812628-12812647 | Msa0238940:intron | 15.0% |
| !! | TAACTATTGTTATATATTTG+TGG | + | chr2_2:12812831-12812850 | Msa0238940:intron | 15.0% |
| !! | TTAATAATCATAATCAATGA+AGG | + | chr2_2:12814164-12814183 | Msa0238940:intron | 15.0% |
| !!! | TTTGAGTTTTATTCTTAAAT+TGG | - | chr2_2:12814607-12814626 | None:intergenic | 15.0% |
| !! | AAAAAGATAAACAATGTTTA+GGG | - | chr2_2:12814661-12814680 | None:intergenic | 15.0% |
| !! | AAAAAAGATAAACAATGTTT+AGG | - | chr2_2:12814662-12814681 | None:intergenic | 15.0% |
| !!! | TTGTTTATCTTTTTTGAATA+TGG | + | chr2_2:12814667-12814686 | Msa0238940:intron | 15.0% |
| !! | TATTTATTTGTTTAAGTGAC+TGG | - | chr2_2:12810736-12810755 | None:intergenic | 20.0% |
| !!! | ATTAGTTGAATTTTCAGTAA+CGG | - | chr2_2:12811007-12811026 | None:intergenic | 20.0% |
| !!! | TTTCTTATTTGATATTCGAT+TGG | + | chr2_2:12811114-12811133 | Msa0238940:intron | 20.0% |
| !! | AATAGAAGTTACCAAAATAA+GGG | - | chr2_2:12811276-12811295 | None:intergenic | 20.0% |
| !! | AAATAGAAGTTACCAAAATA+AGG | - | chr2_2:12811277-12811296 | None:intergenic | 20.0% |
| !!! | AACAGCAAATAATTCATTTT+AGG | - | chr2_2:12811451-12811470 | None:intergenic | 20.0% |
| !!! | TTATAATTTTGATACCTTCA+AGG | - | chr2_2:12811690-12811709 | None:intergenic | 20.0% |
| !!! | CTTTTTATATCAGAAAAGAA+AGG | + | chr2_2:12812627-12812646 | Msa0238940:intron | 20.0% |
| !! | AACTTATGACAAATTTATCA+AGG | + | chr2_2:12813777-12813796 | Msa0238940:CDS | 20.0% |
| !!! | ATGTTTTCATAATTAAGTGT+TGG | + | chr2_2:12813889-12813908 | Msa0238940:intron | 20.0% |
| !!! | ATTATGATTCAATGGTTTTA+TGG | - | chr2_2:12813915-12813934 | None:intergenic | 20.0% |
| !! | AATAAATGAAAGCAAATAGA+TGG | + | chr2_2:12814107-12814126 | Msa0238940:intron | 20.0% |
| !! | AAATCTAGGTAGAAATATAA+TGG | - | chr2_2:12814372-12814391 | None:intergenic | 20.0% |
| !!! | CATTTTTATTTTCATTGCAA+GGG | + | chr2_2:12814555-12814574 | Msa0238940:intron | 20.0% |
| !!! | ATTTTTATTTTCATTGCAAG+GGG | + | chr2_2:12814556-12814575 | Msa0238940:intron | 20.0% |
| !! | AACTCAAATGTTTAATTAAG+TGG | + | chr2_2:12814619-12814638 | Msa0238940:intron | 20.0% |
| !! | AAAAGATAAACAATGTTTAG+GGG | - | chr2_2:12814660-12814679 | None:intergenic | 20.0% |
| !!! | TACTGCTTTAAAAAAATCAT+AGG | - | chr2_2:12814803-12814822 | None:intergenic | 20.0% |
| ! | ACTTAAAAGATATGCATTCA+TGG | - | chr2_2:12811719-12811738 | None:intergenic | 25.0% |
| !! | AACACAGTAAATCTTGATTT+TGG | - | chr2_2:12811875-12811894 | None:intergenic | 25.0% |
| ! | GGACAAAAACATTAACTTAA+CGG | + | chr2_2:12811932-12811951 | Msa0238940:intron | 25.0% |
| ! | TCCAATTACTTGTAAATGTA+GGG | + | chr2_2:12812767-12812786 | Msa0238940:intron | 25.0% |
| !!! | ATTTTTTTCCTTTAATGTGC+TGG | + | chr2_2:12812988-12813007 | Msa0238940:intron | 25.0% |
| ! | CTCTTCAAAAACAAATCTTA+TGG | - | chr2_2:12813071-12813090 | None:intergenic | 25.0% |
| !!! | AAGATTTGTTTTTGAAGAGT+CGG | + | chr2_2:12813072-12813091 | Msa0238940:intron | 25.0% |
| ! | ATACTGTGAATATTAACACA+TGG | + | chr2_2:12813104-12813123 | Msa0238940:intron | 25.0% |
| ! | TACTGTGAATATTAACACAT+GGG | + | chr2_2:12813105-12813124 | Msa0238940:intron | 25.0% |
| ! | TTTATTGCATGCAATAAGTT+TGG | + | chr2_2:12813290-12813309 | Msa0238940:intron | 25.0% |
| ! | TTATTGCATGCAATAAGTTT+GGG | + | chr2_2:12813291-12813310 | Msa0238940:intron | 25.0% |
| ! | AAAAATTGAAAGATGTAGCA+GGG | - | chr2_2:12813476-12813495 | None:intergenic | 25.0% |
| ! | AAAAAATTGAAAGATGTAGC+AGG | - | chr2_2:12813477-12813496 | None:intergenic | 25.0% |
| !!! | TGCTACATCTTTCAATTTTT+TGG | + | chr2_2:12813476-12813495 | Msa0238940:intron | 25.0% |
| !! | TTTGAAACTTATCATATGCT+TGG | - | chr2_2:12813536-12813555 | None:intergenic | 25.0% |
| ! | AAAGAGACCAAATGAAAAAT+TGG | + | chr2_2:12813553-12813572 | Msa0238940:intron | 25.0% |
| !! | ATAAGTGCCAATTTTTCATT+TGG | - | chr2_2:12813563-12813582 | None:intergenic | 25.0% |
| ! | ATGAAAAATTGGCACTTATT+TGG | + | chr2_2:12813564-12813583 | Msa0238940:intron | 25.0% |
| ! | TTATTTAGCAAAAGCAAACT+AGG | - | chr2_2:12813619-12813638 | None:intergenic | 25.0% |
| ! | ATGTGTAATTCAGTAAAACA+TGG | - | chr2_2:12813651-12813670 | None:intergenic | 25.0% |
| ! | TGTACATGTTAACTGTTTAT+AGG | + | chr2_2:12813858-12813877 | Msa0238940:intron | 25.0% |
| ! | GCAAGATAATTATGATTCAA+TGG | - | chr2_2:12813923-12813942 | None:intergenic | 25.0% |
| ! | TACCAAATAAATCATGATTC+AGG | - | chr2_2:12813947-12813966 | None:intergenic | 25.0% |
| ! | ATTTACTAAATGATCAATGC+AGG | - | chr2_2:12814134-12814153 | None:intergenic | 25.0% |
| !! | GAAGGAAATCTAAACAATTT+TGG | - | chr2_2:12814192-12814211 | None:intergenic | 25.0% |
| ! | TACAAAAAAATTACCAAACC+AGG | - | chr2_2:12814267-12814286 | None:intergenic | 25.0% |
| !!! | GTTTGGTAATTTTTTTGTAG+AGG | + | chr2_2:12814268-12814287 | Msa0238940:intron | 25.0% |
| ! | TCATCTGAAGAAAATGATAT+TGG | - | chr2_2:12814429-12814448 | None:intergenic | 25.0% |
| ! | ATATAAATGAATGTTGAACC+AGG | - | chr2_2:12814509-12814528 | None:intergenic | 25.0% |
| ! | CCTTGCAATGAAAATAAAAA+TGG | - | chr2_2:12814557-12814576 | None:intergenic | 25.0% |
| !!! | CCATTTTTATTTTCATTGCA+AGG | + | chr2_2:12814554-12814573 | Msa0238940:intron | 25.0% |
| ! | AAAGATAAACAATGTTTAGG+GGG | - | chr2_2:12814659-12814678 | None:intergenic | 25.0% |
| ! | ATCGTACAGATTATCTAAAA+GGG | - | chr2_2:12814855-12814874 | None:intergenic | 25.0% |
| ! | AAGAAAAGAAATAGAATACG+AGG | + | chr2_2:12815118-12815137 | Msa0238940:three_prime_UTR | 25.0% |
| ! | ATTTCTATATCATACTGTAG+AGG | - | chr2_2:12815150-12815169 | None:intergenic | 25.0% |
| ! | GTCAGTAAATAGTTGAAATT+TGG | + | chr2_2:12815180-12815199 | Msa0238940:three_prime_UTR | 25.0% |
| ! | TTTGTTGTAGTTTGGCATTT+AGG | - | chr2_2:12810649-12810668 | None:intergenic | 30.0% |
| TTAGTTGTGTTTGGATTGTA+TGG | - | chr2_2:12810696-12810715 | None:intergenic | 30.0% | |
| AAAGAAACGTTAGTTGTGTT+TGG | - | chr2_2:12810705-12810724 | None:intergenic | 30.0% | |
| TTTGTTTAAGTGACTGGAAA+GGG | - | chr2_2:12810730-12810749 | None:intergenic | 30.0% | |
| ATTTGTTTAAGTGACTGGAA+AGG | - | chr2_2:12810731-12810750 | None:intergenic | 30.0% | |
| !! | ATGATGATGATGATTTGTTG+AGG | - | chr2_2:12810852-12810871 | None:intergenic | 30.0% |
| !! | TTTTCAGTAACGGAATCTAA+AGG | - | chr2_2:12810997-12811016 | None:intergenic | 30.0% |
| ATCCGTTAATATCTTTCTCA+CGG | + | chr2_2:12811083-12811102 | Msa0238940:CDS | 30.0% | |
| TACCGTGAGAAAGATATTAA+CGG | - | chr2_2:12811088-12811107 | None:intergenic | 30.0% | |
| ! | CAGCTTCAATTGATATTTTC+AGG | + | chr2_2:12811168-12811187 | Msa0238940:intron | 30.0% |
| ATCGTGATAGAAATTATGCA+AGG | + | chr2_2:12811221-12811240 | Msa0238940:CDS | 30.0% | |
| !!! | TTTTTTGAAAACTCGGTATC+TGG | - | chr2_2:12811624-12811643 | None:intergenic | 30.0% |
| !! | GCATATCTTTTAAGTGAGTT+TGG | + | chr2_2:12811724-12811743 | Msa0238940:intron | 30.0% |
| TAGTCTCTGAATGTATTGAA+CGG | - | chr2_2:12811824-12811843 | None:intergenic | 30.0% | |
| TGATACAACCTTACACATTT+AGG | + | chr2_2:12811847-12811866 | Msa0238940:intron | 30.0% | |
| GATACAACCTTACACATTTA+GGG | + | chr2_2:12811848-12811867 | Msa0238940:intron | 30.0% | |
| AAAACCTAAAATGCAACAGA+AGG | + | chr2_2:12811900-12811919 | Msa0238940:intron | 30.0% | |
| TGGGATATTACATACATCTA+TGG | - | chr2_2:12811973-12811992 | None:intergenic | 30.0% | |
| ATGTAATATCCCATTTCCAA+AGG | + | chr2_2:12811980-12811999 | Msa0238940:intron | 30.0% | |
| !!! | TGTTCATATTTTCTAGCTCA+GGG | - | chr2_2:12812081-12812100 | None:intergenic | 30.0% |
| !!! | TTGTTCATATTTTCTAGCTC+AGG | - | chr2_2:12812082-12812101 | None:intergenic | 30.0% |
| AAGTTTGCAATGAATTTGAC+AGG | + | chr2_2:12812114-12812133 | Msa0238940:intron | 30.0% | |
| ATTTACAACAGAGTGAAGAA+TGG | - | chr2_2:12812228-12812247 | None:intergenic | 30.0% | |
| AATCGATAGACAAATTGACA+AGG | - | chr2_2:12812256-12812275 | None:intergenic | 30.0% | |
| ! | TGCTCCTTTTATGTGTTAAT+TGG | + | chr2_2:12812288-12812307 | Msa0238940:intron | 30.0% |
| TACGCCAATTAACACATAAA+AGG | - | chr2_2:12812295-12812314 | None:intergenic | 30.0% | |
| AAGTTCACAAATCACAGTAT+AGG | - | chr2_2:12812318-12812337 | None:intergenic | 30.0% | |
| ! | GCATCACAATCTAAAATTGA+TGG | - | chr2_2:12812343-12812362 | None:intergenic | 30.0% |
| CAAACCAAAATACACAAACA+TGG | - | chr2_2:12812365-12812384 | None:intergenic | 30.0% | |
| !!! | CATGTTTGTGTATTTTGGTT+TGG | + | chr2_2:12812363-12812382 | Msa0238940:intron | 30.0% |
| !!! | TATTTTGGTTTGGTCTAACA+TGG | + | chr2_2:12812373-12812392 | Msa0238940:intron | 30.0% |
| !! | AACTGGATTAGTCAATTCAT+AGG | - | chr2_2:12812526-12812545 | None:intergenic | 30.0% |
| ATTGACTAATCCAGTTTATG+AGG | + | chr2_2:12812530-12812549 | Msa0238940:intron | 30.0% | |
| TTTAGAAGAAAACTAACAGC+TGG | - | chr2_2:12812663-12812682 | None:intergenic | 30.0% | |
| GTCCAATTACTTGTAAATGT+AGG | + | chr2_2:12812766-12812785 | Msa0238940:intron | 30.0% | |
| TCCCTACATTTACAAGTAAT+TGG | - | chr2_2:12812771-12812790 | None:intergenic | 30.0% | |
| AATGCATCATTTGCTCATTA+TGG | + | chr2_2:12812948-12812967 | Msa0238940:CDS | 30.0% | |
| CATTATGGAAGTAAGATCTT+TGG | + | chr2_2:12812963-12812982 | Msa0238940:intron | 30.0% | |
| ! | CTCAATTTTGTCTCTTTTCA+GGG | - | chr2_2:12813155-12813174 | None:intergenic | 30.0% |
| CTGAAAAGAGACAAAATTGA+GGG | + | chr2_2:12813154-12813173 | Msa0238940:intron | 30.0% | |
| TGAAAAGAGACAAAATTGAG+GGG | + | chr2_2:12813155-12813174 | Msa0238940:intron | 30.0% | |
| TACGTTCAGATTTGTAGTTT+AGG | + | chr2_2:12813192-12813211 | Msa0238940:intron | 30.0% | |
| TTAGGAAAATAATCACAGAG+TGG | + | chr2_2:12813210-12813229 | Msa0238940:intron | 30.0% | |
| GTATTTAATAAGCCCAAGAA+TGG | + | chr2_2:12813410-12813429 | Msa0238940:CDS | 30.0% | |
| AATACTTACATGCCATTCTT+GGG | - | chr2_2:12813425-12813444 | None:intergenic | 30.0% | |
| TAATACTTACATGCCATTCT+TGG | - | chr2_2:12813426-12813445 | None:intergenic | 30.0% | |
| GACAAATTTATCAAGGAACA+AGG | + | chr2_2:12813784-12813803 | Msa0238940:CDS | 30.0% | |
| AAATTTATCAAGGAACAAGG+AGG | + | chr2_2:12813787-12813806 | Msa0238940:CDS | 30.0% | |
| CATGTTAACTGTTTATAGGT+TGG | + | chr2_2:12813862-12813881 | Msa0238940:intron | 30.0% | |
| CTCCTGAATCATGATTTATT+TGG | + | chr2_2:12813942-12813961 | Msa0238940:intron | 30.0% | |
| ATTTGGTATGAAATCAGTTG+TGG | + | chr2_2:12813959-12813978 | Msa0238940:intron | 30.0% | |
| TTTGGTATGAAATCAGTTGT+GGG | + | chr2_2:12813960-12813979 | Msa0238940:intron | 30.0% | |
| ACAATAAACGATGAATGTGA+AGG | - | chr2_2:12814210-12814229 | None:intergenic | 30.0% | |
| ! | AGGTTAGTTACTTAATCACA+TGG | - | chr2_2:12814247-12814266 | None:intergenic | 30.0% |
| ATGTGATTAAGTAACTAACC+TGG | + | chr2_2:12814246-12814265 | Msa0238940:intron | 30.0% | |
| ATTAAGTAACTAACCTGGTT+TGG | + | chr2_2:12814251-12814270 | Msa0238940:intron | 30.0% | |
| GTTGCTGTGAATTATTATAC+AGG | + | chr2_2:12814317-12814336 | Msa0238940:CDS | 30.0% | |
| ! | AAGCAAAGGGGTTTTTATTA+GGG | - | chr2_2:12814715-12814734 | None:intergenic | 30.0% |
| ACTAAAGTATACAAGCAAAG+GGG | - | chr2_2:12814727-12814746 | None:intergenic | 30.0% | |
| GACTAAAGTATACAAGCAAA+GGG | - | chr2_2:12814728-12814747 | None:intergenic | 30.0% | |
| TGACTAAAGTATACAAGCAA+AGG | - | chr2_2:12814729-12814748 | None:intergenic | 30.0% | |
| TATACTTTAGTCAGAATACC+AGG | + | chr2_2:12814736-12814755 | Msa0238940:intron | 30.0% | |
| CATCGTACAGATTATCTAAA+AGG | - | chr2_2:12814856-12814875 | None:intergenic | 30.0% | |
| TGAACATTGTAAGACAATGA+GGG | + | chr2_2:12814904-12814923 | Msa0238940:CDS | 30.0% | |
| AGCATATTCTGTGTGAATGA+TGG | - | chr2_2:12810591-12810610 | None:intergenic | 35.0% | |
| ATGGTATGGTATTTGTCGTT+TGG | - | chr2_2:12810677-12810696 | None:intergenic | 35.0% | |
| TGTGTTTGGATTGTATGGTA+TGG | - | chr2_2:12810691-12810710 | None:intergenic | 35.0% | |
| !!! | CTAAAGGAGAGGTTTTAGAA+GGG | - | chr2_2:12810981-12811000 | None:intergenic | 35.0% |
| !!! | TCTAAAGGAGAGGTTTTAGA+AGG | - | chr2_2:12810982-12811001 | None:intergenic | 35.0% |
| !! | ATTGCAAGAGTCCCTTATTT+TGG | + | chr2_2:12811262-12811281 | Msa0238940:CDS | 35.0% |
| GGATTTAAATTGAAACTGGG+GGG | - | chr2_2:12811551-12811570 | None:intergenic | 35.0% | |
| GGGATTTAAATTGAAACTGG+GGG | - | chr2_2:12811552-12811571 | None:intergenic | 35.0% | |
| GGGGATTTAAATTGAAACTG+GGG | - | chr2_2:12811553-12811572 | None:intergenic | 35.0% | |
| GGGGGATTTAAATTGAAACT+GGG | - | chr2_2:12811554-12811573 | None:intergenic | 35.0% | |
| ! | TTTTGGTCCCTAAATGTGTA+AGG | - | chr2_2:12811858-12811877 | None:intergenic | 35.0% |
| TGCTAAATCCATCTTCAATG+AGG | + | chr2_2:12812188-12812207 | Msa0238940:intron | 35.0% | |
| GCTAAATCCATCTTCAATGA+GGG | + | chr2_2:12812189-12812208 | Msa0238940:intron | 35.0% | |
| CTAAATCCATCTTCAATGAG+GGG | + | chr2_2:12812190-12812209 | Msa0238940:intron | 35.0% | |
| ! | GATGCCATGTTTGTGTATTT+TGG | + | chr2_2:12812358-12812377 | Msa0238940:intron | 35.0% |
| CATGTGGAGAATTGACATAA+AGG | - | chr2_2:12812860-12812879 | None:intergenic | 35.0% | |
| AACCAAAACTCTCATACATG+TGG | - | chr2_2:12812876-12812895 | None:intergenic | 35.0% | |
| !! | ACATGTATGAGAGTTTTGGT+TGG | + | chr2_2:12812875-12812894 | Msa0238940:CDS | 35.0% |
| ACAAGATACCAGCACATTAA+AGG | - | chr2_2:12812999-12813018 | None:intergenic | 35.0% | |
| ! | CCTCAATTTTGTCTCTTTTC+AGG | - | chr2_2:12813156-12813175 | None:intergenic | 35.0% |
| CCTGAAAAGAGACAAAATTG+AGG | + | chr2_2:12813153-12813172 | Msa0238940:intron | 35.0% | |
| ATGCAATAAGTTTGGGTCTA+TGG | + | chr2_2:12813298-12813317 | Msa0238940:intron | 35.0% | |
| CAATATGTTGAGCAAGAAAC+CGG | - | chr2_2:12813359-12813378 | None:intergenic | 35.0% | |
| TTGGTATGAAATCAGTTGTG+GGG | + | chr2_2:12813961-12813980 | Msa0238940:intron | 35.0% | |
| AGAGGAGTTGAAAAAAATGC+CGG | + | chr2_2:12814286-12814305 | Msa0238940:intron | 35.0% | |
| TAATAATTCACAGCAACCTC+AGG | - | chr2_2:12814314-12814333 | None:intergenic | 35.0% | |
| GCTGTGAATTATTATACAGG+AGG | + | chr2_2:12814320-12814339 | Msa0238940:CDS | 35.0% | |
| ! | GGAGGTGACTTGTATTTATT+TGG | + | chr2_2:12814338-12814357 | Msa0238940:CDS | 35.0% |
| AGATGAATTTCAAACCTCCA+GGG | + | chr2_2:12814443-12814462 | Msa0238940:intron | 35.0% | |
| TTTCAAGACATACCTATCGT+AGG | - | chr2_2:12814486-12814505 | None:intergenic | 35.0% | |
| ! | CAAGCAAAGGGGTTTTTATT+AGG | - | chr2_2:12814716-12814735 | None:intergenic | 35.0% |
| TTAGTCAGAATACCAGGATT+AGG | + | chr2_2:12814742-12814761 | Msa0238940:intron | 35.0% | |
| CAGGATTAGGTTAATTGTCT+GGG | + | chr2_2:12814755-12814774 | Msa0238940:intron | 35.0% | |
| AGGATTAGGTTAATTGTCTG+GGG | + | chr2_2:12814756-12814775 | Msa0238940:intron | 35.0% | |
| ! | AGGCAATGAAGCATTTGATA+TGG | - | chr2_2:12814783-12814802 | None:intergenic | 35.0% |
| AGCAGTAAAATTTCTCACGT+TGG | + | chr2_2:12814816-12814835 | Msa0238940:intron | 35.0% | |
| CTGAACATTGTAAGACAATG+AGG | + | chr2_2:12814903-12814922 | Msa0238940:CDS | 35.0% | |
| ! | TGTTACTTCTAATCCAGCTA+AGG | + | chr2_2:12815048-12815067 | Msa0238940:CDS | 35.0% |
| ATGAGATTCCTCTACAATGA+GGG | + | chr2_2:12815203-12815222 | Msa0238940:three_prime_UTR | 35.0% | |
| ATTCTGTGTGAATGATGGTC+CGG | - | chr2_2:12810586-12810605 | None:intergenic | 40.0% | |
| TACCAAGTACTAATAGTCGC+CGG | + | chr2_2:12810617-12810636 | Msa0238940:five_prime_UTR | 40.0% | |
| ! | TTTGGCATTTAGGACCATTC+CGG | - | chr2_2:12810639-12810658 | None:intergenic | 40.0% |
| ! | TATGGTATTTGTCGTTTGGC+GGG | - | chr2_2:12810673-12810692 | None:intergenic | 40.0% |
| ! | GTATGGTATTTGTCGTTTGG+CGG | - | chr2_2:12810674-12810693 | None:intergenic | 40.0% |
| !!! | GGTGGTGAGTTTTTTAGTGT+TGG | - | chr2_2:12810763-12810782 | None:intergenic | 40.0% |
| !! | ATGATGTTTGGTGGTGGAAA+TGG | - | chr2_2:12810784-12810803 | None:intergenic | 40.0% |
| ATTTCCACCACCAAACATCA+TGG | + | chr2_2:12810783-12810802 | Msa0238940:exon | 40.0% | |
| !! | TGATGATTTGTTGAGGTGTG+AGG | - | chr2_2:12810845-12810864 | None:intergenic | 40.0% |
| !! | GAAGACGATAACGGATTTGA+GGG | - | chr2_2:12810888-12810907 | None:intergenic | 40.0% |
| ! | AGTAACGGAATCTAAAGGAG+AGG | - | chr2_2:12810992-12811011 | None:intergenic | 40.0% |
| ! | ATACTTCATCGACTAGTGCT+TGG | + | chr2_2:12811034-12811053 | Msa0238940:CDS | 40.0% |
| ! | TACTTCATCGACTAGTGCTT+GGG | + | chr2_2:12811035-12811054 | Msa0238940:CDS | 40.0% |
| TGTCAAGCGTTAAACCAACT+TGG | + | chr2_2:12811476-12811495 | Msa0238940:intron | 40.0% | |
| GTCAAGCGTTAAACCAACTT+GGG | + | chr2_2:12811477-12811496 | Msa0238940:intron | 40.0% | |
| AATCAAACCTAAACCTCGAG+AGG | - | chr2_2:12811528-12811547 | None:intergenic | 40.0% | |
| GGGGGGATTTAAATTGAAAC+TGG | - | chr2_2:12811555-12811574 | None:intergenic | 40.0% | |
| CAAGGACTAACTAACCCAAA+GGG | - | chr2_2:12811599-12811618 | None:intergenic | 40.0% | |
| ! | GAAGCCTTCTGTTGCATTTT+AGG | - | chr2_2:12811907-12811926 | None:intergenic | 40.0% |
| ATGAATTTGACAGGCCAACA+AGG | + | chr2_2:12812123-12812142 | Msa0238940:intron | 40.0% | |
| TAAGTTCCCCTCATTGAAGA+TGG | - | chr2_2:12812199-12812218 | None:intergenic | 40.0% | |
| TACAACAGAGTGAAGAATGG+CGG | - | chr2_2:12812225-12812244 | None:intergenic | 40.0% | |
| CTCTTCGAATCCTCATAAAC+TGG | - | chr2_2:12812543-12812562 | None:intergenic | 40.0% | |
| ! | CTCCACATGTATGAGAGTTT+TGG | + | chr2_2:12812871-12812890 | Msa0238940:CDS | 40.0% |
| !!! | TGTATGAGAGTTTTGGTTGG+TGG | + | chr2_2:12812878-12812897 | Msa0238940:CDS | 40.0% |
| ATGCATTTCATTCCAGCTCT+CGG | - | chr2_2:12812935-12812954 | None:intergenic | 40.0% | |
| ! | GACTGCTACTAAGATTTTGC+AGG | - | chr2_2:12813045-12813064 | None:intergenic | 40.0% |
| CAAACTAGGTCAGTTTGTAC+AGG | - | chr2_2:12813605-12813624 | None:intergenic | 40.0% | |
| !! | TCAAGGAACAAGGAGGTATT+TGG | + | chr2_2:12813794-12813813 | Msa0238940:intron | 40.0% |
| !! | CAAGGAACAAGGAGGTATTT+GGG | + | chr2_2:12813795-12813814 | Msa0238940:intron | 40.0% |
| CTACACGGCTAGAATAATCT+TGG | - | chr2_2:12814024-12814043 | None:intergenic | 40.0% | |
| CAAAAAGCTGAGTCTCTACA+CGG | - | chr2_2:12814039-12814058 | None:intergenic | 40.0% | |
| ! | TCTACCTAGATTTTCACTCG+AGG | + | chr2_2:12814379-12814398 | Msa0238940:intron | 40.0% |
| TTTGCCTCGAGTGAAAATCT+AGG | - | chr2_2:12814386-12814405 | None:intergenic | 40.0% | |
| TTCACTCGAGGCAAAAAAAC+TGG | + | chr2_2:12814391-12814410 | Msa0238940:intron | 40.0% | |
| CAGATGAATTTCAAACCTCC+AGG | + | chr2_2:12814442-12814461 | Msa0238940:intron | 40.0% | |
| ATCGTAGGCCTTCTAGTATT+TGG | - | chr2_2:12814471-12814490 | None:intergenic | 40.0% | |
| AATACTAGAAGGCCTACGAT+AGG | + | chr2_2:12814471-12814490 | Msa0238940:CDS | 40.0% | |
| GATAGGTATGTCTTGAAACC+TGG | + | chr2_2:12814488-12814507 | Msa0238940:intron | 40.0% | |
| CCAGACAATTAACCTAATCC+TGG | - | chr2_2:12814757-12814776 | None:intergenic | 40.0% | |
| CCAGGATTAGGTTAATTGTC+TGG | + | chr2_2:12814754-12814773 | Msa0238940:intron | 40.0% | |
| TCTGCATCTGCATATGAATG+AGG | - | chr2_2:12814959-12814978 | None:intergenic | 40.0% | |
| TCATTCATATGCAGATGCAG+AGG | + | chr2_2:12814958-12814977 | Msa0238940:CDS | 40.0% | |
| TCAGTCTGTACAATTGAAGC+AGG | + | chr2_2:12814992-12815011 | Msa0238940:CDS | 40.0% | |
| ATGTCTTACTTCACCTTAGC+TGG | - | chr2_2:12815064-12815083 | None:intergenic | 40.0% | |
| AGCTAAGGTGAAGTAAGACA+TGG | + | chr2_2:12815063-12815082 | Msa0238940:exon | 40.0% | |
| GATGAGATTCCTCTACAATG+AGG | + | chr2_2:12815202-12815221 | Msa0238940:three_prime_UTR | 40.0% | |
| CTAAAAATCCACTACCGTGC+CGG | + | chr2_2:12810564-12810583 | Msa0238940:five_prime_UTR | 45.0% | |
| TTCCGGCGACTATTAGTACT+TGG | - | chr2_2:12810622-12810641 | None:intergenic | 45.0% | |
| AGTACTAATAGTCGCCGGAA+TGG | + | chr2_2:12810622-12810641 | Msa0238940:five_prime_UTR | 45.0% | |
| !!! | TGGCGGGTTTTGTTGTAGTT+TGG | - | chr2_2:12810657-12810676 | None:intergenic | 45.0% |
| !! | ATGTTTGGTGGTGGAAATGG+TGG | - | chr2_2:12810781-12810800 | None:intergenic | 45.0% |
| !! | GATTTGTTGAGGTGTGAGGT+TGG | - | chr2_2:12810841-12810860 | None:intergenic | 45.0% |
| !! | GGAAGACGATAACGGATTTG+AGG | - | chr2_2:12810889-12810908 | None:intergenic | 45.0% |
| GACGTAGAGGAAGACGATAA+CGG | - | chr2_2:12810897-12810916 | None:intergenic | 45.0% | |
| GCACGAATTGAAAGACGTAG+AGG | - | chr2_2:12810910-12810929 | None:intergenic | 45.0% | |
| TCGACTAGTGCTTGGGAAAA+AGG | + | chr2_2:12811042-12811061 | Msa0238940:CDS | 45.0% | |
| CGACTAGTGCTTGGGAAAAA+GGG | + | chr2_2:12811043-12811062 | Msa0238940:CDS | 45.0% | |
| GACTAGTGCTTGGGAAAAAG+GGG | + | chr2_2:12811044-12811063 | Msa0238940:CDS | 45.0% | |
| AGCGTTAAACCAACTTGGGT+TGG | + | chr2_2:12811481-12811500 | Msa0238940:intron | 45.0% | |
| !! | TAAACCAACTTGGGTTGGCT+TGG | + | chr2_2:12811486-12811505 | Msa0238940:intron | 45.0% |
| !! | AAACCAACTTGGGTTGGCTT+GGG | + | chr2_2:12811487-12811506 | Msa0238940:intron | 45.0% |
| CAATTTAAATCCCCCCCAAG+TGG | + | chr2_2:12811559-12811578 | Msa0238940:intron | 45.0% | |
| CCAAGGACTAACTAACCCAA+AGG | - | chr2_2:12811600-12811619 | None:intergenic | 45.0% | |
| !! | CCTTTGGGTTAGTTAGTCCT+TGG | + | chr2_2:12811597-12811616 | Msa0238940:intron | 45.0% |
| AAAACTCGGTATCTGGTCCA+AGG | - | chr2_2:12811617-12811636 | None:intergenic | 45.0% | |
| CTTGTCACTACAGTCCTTGA+AGG | + | chr2_2:12811673-12811692 | Msa0238940:intron | 45.0% | |
| GGGAACTATGAGAATGAGAC+TGG | - | chr2_2:12812045-12812064 | None:intergenic | 45.0% | |
| AATTTGACAGGCCAACAAGG+TGG | + | chr2_2:12812126-12812145 | Msa0238940:intron | 45.0% | |
| !! | GTTGAGTTGATCCACCTTGT+TGG | - | chr2_2:12812140-12812159 | None:intergenic | 45.0% |
| AGCTAGATTGCAGGTCATGA+AGG | - | chr2_2:12812162-12812181 | None:intergenic | 45.0% | |
| !! | TGGTTTGGTCTAACATGGTC+TGG | + | chr2_2:12812378-12812397 | Msa0238940:intron | 45.0% |
| TTTGGTCTAACATGGTCTGG+CGG | + | chr2_2:12812381-12812400 | Msa0238940:intron | 45.0% | |
| CATGTGTAGCAGTGAGAAGT+AGG | - | chr2_2:12812592-12812611 | None:intergenic | 45.0% | |
| AAGTTTGGGTCTATGGTTGC+AGG | + | chr2_2:12813305-12813324 | Msa0238940:intron | 45.0% | |
| TATGGTTGCAGGAACTTGGA+GGG | + | chr2_2:12813316-12813335 | Msa0238940:intron | 45.0% | |
| AAATTGAAGAGCCAAGCAGC+AGG | - | chr2_2:12813687-12813706 | None:intergenic | 45.0% | |
| TCTGCCATACTTCAGCCTAA+CGG | - | chr2_2:12813989-12814008 | None:intergenic | 45.0% | |
| ! | TCTAGTATTTGGAACCCTGG+AGG | - | chr2_2:12814460-12814479 | None:intergenic | 45.0% |
| ! | CCTTCTAGTATTTGGAACCC+TGG | - | chr2_2:12814463-12814482 | None:intergenic | 45.0% |
| CCAGGGTTCCAAATACTAGA+AGG | + | chr2_2:12814460-12814479 | Msa0238940:CDS | 45.0% | |
| !! | ATTTTCATTGCAAGGGGTGC+AGG | + | chr2_2:12814562-12814581 | Msa0238940:intron | 45.0% |
| !! | TTTTCATTGCAAGGGGTGCA+GGG | + | chr2_2:12814563-12814582 | Msa0238940:intron | 45.0% |
| ATGAGGGCTTGCCAAACTTA+TGG | + | chr2_2:12814920-12814939 | Msa0238940:CDS | 45.0% | |
| TGAGGGCTTGCCAAACTTAT+GGG | + | chr2_2:12814921-12814940 | Msa0238940:CDS | 45.0% | |
| ACAATTGAAGCAGGCTGTGA+AGG | + | chr2_2:12815001-12815020 | Msa0238940:CDS | 45.0% | |
| CTCATACACCCTCATTGTAG+AGG | - | chr2_2:12815214-12815233 | None:intergenic | 45.0% | |
| !!! | TTTTATTTTTTCATTTTTTT+TGG | + | chr2_2:12812489-12812508 | Msa0238940:intron | 5.0% |
| !!! | CGGCACGGTAGTGGATTTTT+AGG | - | chr2_2:12810566-12810585 | None:intergenic | 50.0% |
| TCCACCACCAAACATCATGG+CGG | + | chr2_2:12810786-12810805 | Msa0238940:exon | 50.0% | |
| GTATGCTCCTCTCGAGGTTT+AGG | + | chr2_2:12811518-12811537 | Msa0238940:intron | 50.0% | |
| TTAAATCCCCCCCAAGTGGA+CGG | + | chr2_2:12811563-12811582 | Msa0238940:intron | 50.0% | |
| TCAAATCCCACCGTCCACTT+GGG | - | chr2_2:12811576-12811595 | None:intergenic | 50.0% | |
| ACGGTGGGATTTGACCCTTT+GGG | + | chr2_2:12811582-12811601 | Msa0238940:intron | 50.0% | |
| TGCAACAGAAGGCTTCACTG+TGG | + | chr2_2:12811911-12811930 | Msa0238940:intron | 50.0% | |
| ! | CGCACGTCTCCTTTGGAAAT+GGG | - | chr2_2:12811992-12812011 | None:intergenic | 50.0% |
| CCATTTCCAAAGGAGACGTG+CGG | + | chr2_2:12811990-12812009 | Msa0238940:intron | 50.0% | |
| AAAACACCGCACGTCTCCTT+TGG | - | chr2_2:12811999-12812018 | None:intergenic | 50.0% | |
| GCACAGTAGAGCTAGATTGC+AGG | - | chr2_2:12812171-12812190 | None:intergenic | 50.0% | |
| !!! | TTTTGGTTGGTGGAGACGAG+CGG | + | chr2_2:12812888-12812907 | Msa0238940:CDS | 50.0% |
| ! | AAGTGCATTTTGCCGAGAGC+TGG | + | chr2_2:12812920-12812939 | Msa0238940:CDS | 50.0% |
| GGTCTATGGTTGCAGGAACT+TGG | + | chr2_2:12813312-12813331 | Msa0238940:intron | 50.0% | |
| CTATGGTTGCAGGAACTTGG+AGG | + | chr2_2:12813315-12813334 | Msa0238940:intron | 50.0% | |
| AGGAACTTGGAGGGAATGCT+TGG | + | chr2_2:12813325-12813344 | Msa0238940:intron | 50.0% | |
| AACTTGGAGGGAATGCTTGG+TGG | + | chr2_2:12813328-12813347 | Msa0238940:CDS | 50.0% | |
| ! | GGAATGCTTGGTGGTTTGAC+CGG | + | chr2_2:12813337-12813356 | Msa0238940:CDS | 50.0% |
| ! | AAGCAGCAGGTTGGAATGCT+AGG | - | chr2_2:12813674-12813693 | None:intergenic | 50.0% |
| TAGCATTCCAACCTGCTGCT+TGG | + | chr2_2:12813673-12813692 | Msa0238940:intron | 50.0% | |
| !! | GAAAAAAATGCCGGCTCCTG+AGG | + | chr2_2:12814295-12814314 | Msa0238940:CDS | 50.0% |
| GCCAAACTTATGGGAACCTC+CGG | + | chr2_2:12814930-12814949 | Msa0238940:CDS | 50.0% | |
| ACCGGAGGTTCCCATAAGTT+TGG | - | chr2_2:12814934-12814953 | None:intergenic | 50.0% | |
| CTGCATATGAATGAGGCGAC+CGG | - | chr2_2:12814952-12814971 | None:intergenic | 50.0% | |
| GTGTGAATGATGGTCCGGCA+CGG | - | chr2_2:12810581-12810600 | None:intergenic | 55.0% | |
| ACCAAACATCATGGCGGCGA+CGG | + | chr2_2:12810792-12810811 | Msa0238940:exon | 55.0% | |
| ! | CTCGAGAGGAGCATACTCCA+AGG | - | chr2_2:12811514-12811533 | None:intergenic | 55.0% |
| CTTGGAGTATGCTCCTCTCG+AGG | + | chr2_2:12811512-12811531 | Msa0238940:intron | 55.0% | |
| AAATCCCACCGTCCACTTGG+GGG | - | chr2_2:12811574-12811593 | None:intergenic | 55.0% | |
| CAAATCCCACCGTCCACTTG+GGG | - | chr2_2:12811575-12811594 | None:intergenic | 55.0% | |
| GTCAAATCCCACCGTCCACT+TGG | - | chr2_2:12811577-12811596 | None:intergenic | 55.0% | |
| GACGGTGGGATTTGACCCTT+TGG | + | chr2_2:12811581-12811600 | Msa0238940:intron | 55.0% | |
| ! | CCGCACGTCTCCTTTGGAAA+TGG | - | chr2_2:12811993-12812012 | None:intergenic | 55.0% |
| CTCAGGGCAGCGTTTGTGTT+GGG | - | chr2_2:12812065-12812084 | None:intergenic | 55.0% | |
| TAACATGGTCTGGCGGCATC+TGG | + | chr2_2:12812388-12812407 | Msa0238940:intron | 55.0% | |
| TGAAGAGCCAAGCAGCAGGT+TGG | - | chr2_2:12813683-12813702 | None:intergenic | 55.0% | |
| ATCAGTTGTGGGGAGCCGTT+AGG | + | chr2_2:12813971-12813990 | Msa0238940:intron | 55.0% | |
| GGAGCCGTTAGGCTGAAGTA+TGG | + | chr2_2:12813982-12814001 | Msa0238940:intron | 55.0% | |
| TTCACAGCAACCTCAGGAGC+CGG | - | chr2_2:12814308-12814327 | None:intergenic | 55.0% | |
| CATATGAATGAGGCGACCGG+AGG | - | chr2_2:12814949-12814968 | None:intergenic | 55.0% | |
| ATGATGGTCCGGCACGGTAG+TGG | - | chr2_2:12810575-12810594 | None:intergenic | 60.0% | |
| ! | GCCGCCATGATGTTTGGTGG+TGG | - | chr2_2:12810790-12810809 | None:intergenic | 60.0% |
| GTCGCCGCCATGATGTTTGG+TGG | - | chr2_2:12810793-12810812 | None:intergenic | 60.0% | |
| GGTCCCAAGCCAACCCAAGT+TGG | - | chr2_2:12811493-12811512 | None:intergenic | 60.0% | |
| !! | CTTGGGTTGGCTTGGGACCT+TGG | + | chr2_2:12811494-12811513 | Msa0238940:intron | 60.0% |
| AATCCCACCGTCCACTTGGG+GGG | - | chr2_2:12811573-12811592 | None:intergenic | 60.0% | |
| GCTCAGGGCAGCGTTTGTGT+TGG | - | chr2_2:12812066-12812085 | None:intergenic | 60.0% | |
| TCTGGCGGCATCTGGTCTGA+TGG | + | chr2_2:12812396-12812415 | Msa0238940:intron | 60.0% | |
| GCCGTCGCCGCCATGATGTT+TGG | - | chr2_2:12810796-12810815 | None:intergenic | 65.0% | |
| AATCCCCCCCAAGTGGACGG+TGG | + | chr2_2:12811566-12811585 | Msa0238940:intron | 65.0% | |
| ATCCCCCCCAAGTGGACGGT+GGG | + | chr2_2:12811567-12811586 | Msa0238940:intron | 65.0% | |
| ATCCCACCGTCCACTTGGGG+GGG | - | chr2_2:12811572-12811591 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 12810554 | 12815322 | 12810554 | ID=Msa0238940;Name=Msa0238940 |
| chr2_2 | mRNA | 12810554 | 12815322 | 12810554 | ID=Msa0238940-mRNA-1;Parent=Msa0238940;Name=Msa0238940-mRNA-1;_AED=0.06;_eAED=0.06;_QI=248|1|1|1|1|1|8|244|342 |
| chr2_2 | exon | 12810554 | 12811104 | 12810554 | ID=Msa0238940-mRNA-1:exon:5440;Parent=Msa0238940-mRNA-1 |
| chr2_2 | exon | 12811190 | 12811283 | 12811190 | ID=Msa0238940-mRNA-1:exon:5441;Parent=Msa0238940-mRNA-1 |
| chr2_2 | exon | 12812857 | 12812972 | 12812857 | ID=Msa0238940-mRNA-1:exon:5442;Parent=Msa0238940-mRNA-1 |
| chr2_2 | exon | 12813327 | 12813435 | 12813327 | ID=Msa0238940-mRNA-1:exon:5443;Parent=Msa0238940-mRNA-1 |
| chr2_2 | exon | 12813740 | 12813808 | 12813740 | ID=Msa0238940-mRNA-1:exon:5444;Parent=Msa0238940-mRNA-1 |
| chr2_2 | exon | 12814288 | 12814359 | 12814288 | ID=Msa0238940-mRNA-1:exon:5445;Parent=Msa0238940-mRNA-1 |
| chr2_2 | exon | 12814445 | 12814492 | 12814445 | ID=Msa0238940-mRNA-1:exon:5446;Parent=Msa0238940-mRNA-1 |
| chr2_2 | exon | 12814861 | 12815322 | 12814861 | ID=Msa0238940-mRNA-1:exon:5447;Parent=Msa0238940-mRNA-1 |
| chr2_2 | five_prime_UTR | 12810554 | 12810801 | 12810554 | ID=Msa0238940-mRNA-1:five_prime_utr;Parent=Msa0238940-mRNA-1 |
| chr2_2 | CDS | 12810802 | 12811104 | 12810802 | ID=Msa0238940-mRNA-1:cds;Parent=Msa0238940-mRNA-1 |
| chr2_2 | CDS | 12811190 | 12811283 | 12811190 | ID=Msa0238940-mRNA-1:cds;Parent=Msa0238940-mRNA-1 |
| chr2_2 | CDS | 12812857 | 12812972 | 12812857 | ID=Msa0238940-mRNA-1:cds;Parent=Msa0238940-mRNA-1 |
| chr2_2 | CDS | 12813327 | 12813435 | 12813327 | ID=Msa0238940-mRNA-1:cds;Parent=Msa0238940-mRNA-1 |
| chr2_2 | CDS | 12813740 | 12813808 | 12813740 | ID=Msa0238940-mRNA-1:cds;Parent=Msa0238940-mRNA-1 |
| chr2_2 | CDS | 12814288 | 12814359 | 12814288 | ID=Msa0238940-mRNA-1:cds;Parent=Msa0238940-mRNA-1 |
| chr2_2 | CDS | 12814445 | 12814492 | 12814445 | ID=Msa0238940-mRNA-1:cds;Parent=Msa0238940-mRNA-1 |
| chr2_2 | CDS | 12814861 | 12815078 | 12814861 | ID=Msa0238940-mRNA-1:cds;Parent=Msa0238940-mRNA-1 |
| chr2_2 | three_prime_UTR | 12815079 | 12815322 | 12815079 | ID=Msa0238940-mRNA-1:three_prime_utr;Parent=Msa0238940-mRNA-1 |
| Gene Sequence |
| Protein sequence |
