Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002750 | Msa0140850 | 0.806931 | 6.471487e-50 | -8.615850e-47 |
| Msa0027260 | Msa0140850 | 0.813171 | 2.930105e-51 | -8.615850e-47 |
| Msa0032780 | Msa0140850 | 0.819668 | 1.029090e-52 | -8.615850e-47 |
| Msa0055190 | Msa0140850 | 0.831531 | 1.583478e-55 | -8.615850e-47 |
| Msa0056430 | Msa0140850 | 0.868078 | 8.528380e-66 | -8.615850e-47 |
| Msa0056470 | Msa0140850 | 0.872176 | 3.887518e-67 | -8.615850e-47 |
| Msa0074030 | Msa0140850 | 0.810526 | 1.103412e-50 | -8.615850e-47 |
| Msa0085780 | Msa0140850 | 0.814171 | 1.765079e-51 | -8.615850e-47 |
| Msa0086750 | Msa0140850 | 0.827435 | 1.566788e-54 | -8.615850e-47 |
| Msa0091750 | Msa0140850 | 0.815031 | 1.138546e-51 | -8.615850e-47 |
| Msa0114870 | Msa0140850 | 0.834257 | 3.328583e-56 | -8.615850e-47 |
| Msa0140820 | Msa0140850 | 0.882128 | 1.350151e-70 | -8.615850e-47 |
| Msa0140850 | Msa0146340 | 0.803201 | 3.903473e-49 | -8.615850e-47 |
| Msa0140850 | Msa0149200 | 0.868104 | 8.362879e-66 | -8.615850e-47 |
| Msa0140850 | Msa0172900 | 0.828435 | 9.003565e-55 | -8.615850e-47 |
| Msa0140850 | Msa0183090 | 0.809673 | 1.684354e-50 | -8.615850e-47 |
| Msa0140850 | Msa0189700 | 0.860587 | 1.861957e-63 | -8.615850e-47 |
| Msa0140850 | Msa0230490 | 0.812318 | 4.503225e-51 | -8.615850e-47 |
| Msa0140850 | Msa0232010 | 0.864587 | 1.092434e-64 | -8.615850e-47 |
| Msa0140850 | Msa0232080 | 0.864114 | 1.534082e-64 | -8.615850e-47 |
| Msa0140850 | Msa0250820 | 0.821062 | 4.929548e-53 | -8.615850e-47 |
| Msa0140850 | Msa0257450 | 0.817721 | 2.846985e-52 | -8.615850e-47 |
| Msa0140850 | Msa0275080 | 0.822343 | 2.492408e-53 | -8.615850e-47 |
| Msa0140850 | Msa0280610 | 0.815327 | 9.785518e-52 | -8.615850e-47 |
| Msa0140850 | Msa0336010 | 0.811962 | 5.385933e-51 | -8.615850e-47 |
| Msa0140850 | Msa0348830 | 0.800950 | 1.133042e-48 | -8.615850e-47 |
| Msa0140850 | Msa0369450 | 0.880452 | 5.426999e-70 | -8.615850e-47 |
| Msa0140850 | Msa0374930 | 0.815988 | 6.971068e-52 | -8.615850e-47 |
| Msa0140850 | Msa0425410 | 0.846641 | 1.912069e-59 | -8.615850e-47 |
| Msa0140850 | Msa0425640 | 0.814280 | 1.669415e-51 | -8.615850e-47 |
| Msa0140850 | Msa0427150 | 0.850277 | 1.884399e-60 | -8.615850e-47 |
| Msa0140850 | Msa0432210 | 0.821157 | 4.687691e-53 | -8.615850e-47 |
| Msa0140850 | Msa0436720 | 0.842577 | 2.375666e-58 | -8.615850e-47 |
| Msa0140850 | Msa0482650 | 0.854481 | 1.196203e-61 | -8.615850e-47 |
| Msa0140850 | Msa0521050 | 0.869103 | 3.976765e-66 | -8.615850e-47 |
| Msa0140850 | Msa0524110 | 0.826479 | 2.651896e-54 | -8.615850e-47 |
| Msa0140850 | Msa0547940 | 0.821434 | 4.046205e-53 | -8.615850e-47 |
| Msa0140850 | Msa0581110 | 0.816817 | 4.548161e-52 | -8.615850e-47 |
| Msa0140850 | Msa0588360 | 0.857641 | 1.421393e-62 | -8.615850e-47 |
| Msa0140850 | Msa0602920 | 0.816235 | 6.139782e-52 | -8.615850e-47 |
| Msa0140850 | Msa0643980 | 0.849462 | 3.184250e-60 | -8.615850e-47 |
| Msa0140850 | Msa0661300 | 0.852326 | 4.969413e-61 | -8.615850e-47 |
| Msa0140850 | Msa0666560 | -0.818858 | 1.573633e-52 | -8.615850e-47 |
| Msa0140850 | Msa0698780 | 0.882209 | 1.261840e-70 | -8.615850e-47 |
| Msa0140850 | Msa0711000 | 0.805978 | 1.028193e-49 | -8.615850e-47 |
| Msa0140850 | Msa0725440 | 0.802594 | 5.210354e-49 | -8.615850e-47 |
| Msa0140850 | Msa0784200 | 0.855384 | 6.543266e-62 | -8.615850e-47 |
| Msa0140850 | Msa0818310 | 0.839065 | 1.979810e-57 | -8.615850e-47 |
| Msa0140850 | Msa0830090 | 0.859287 | 4.591160e-63 | -8.615850e-47 |
| Msa0140850 | Msa0858770 | 0.854381 | 1.278135e-61 | -8.615850e-47 |
| Msa0140850 | Msa0881290 | 0.859533 | 3.874035e-63 | -8.615850e-47 |
| Msa0140850 | Msa0953310 | 0.875242 | 3.596051e-68 | -8.615850e-47 |
| Msa0140850 | Msa1019260 | 0.805965 | 1.034483e-49 | -8.615850e-47 |
| Msa0140850 | Msa1021470 | 0.819522 | 1.111063e-52 | -8.615850e-47 |
| Msa0140850 | Msa1077570 | 0.801169 | 1.021986e-48 | -8.615850e-47 |
| Msa0140850 | Msa1078870 | 0.812939 | 3.293853e-51 | -8.615850e-47 |
| Msa0140850 | Msa1081930 | 0.802839 | 4.636402e-49 | -8.615850e-47 |
| Msa0140850 | Msa1085420 | 0.803566 | 3.279307e-49 | -8.615850e-47 |
| Msa0140850 | Msa1126510 | 0.821855 | 3.233297e-53 | -8.615850e-47 |
| Msa0140850 | Msa1126830 | 0.814875 | 1.233089e-51 | -8.615850e-47 |
| Msa0140850 | Msa1163530 | 0.808946 | 2.411611e-50 | -8.615850e-47 |
| Msa0140850 | Msa1165580 | 0.843051 | 1.776707e-58 | -8.615850e-47 |
| Msa0140850 | Msa1165940 | 0.850937 | 1.229295e-60 | -8.615850e-47 |
| Msa0140850 | Msa1166860 | 0.820967 | 5.183239e-53 | -8.615850e-47 |
| Msa0140850 | Msa1199760 | -0.802149 | 6.433404e-49 | -8.615850e-47 |
| Msa0140850 | Msa1215820 | 0.800560 | 1.361049e-48 | -8.615850e-47 |
| Msa0140850 | Msa1229320 | 0.820033 | 8.491047e-53 | -8.615850e-47 |
| Msa0140850 | Msa1256840 | 0.804453 | 2.144985e-49 | -8.615850e-47 |
| Msa0140850 | Msa1269790 | 0.857815 | 1.262368e-62 | -8.615850e-47 |
| Msa0140850 | Msa1299590 | 0.830851 | 2.326732e-55 | -8.615850e-47 |
| Msa0140850 | Msa1311400 | 0.806462 | 8.132393e-50 | -8.615850e-47 |
| Msa0140850 | Msa1332250 | 0.824564 | 7.539904e-54 | -8.615850e-47 |
| Msa0140850 | Msa1338190 | 0.846234 | 2.468681e-59 | -8.615850e-47 |
| Msa0140850 | Msa1343260 | 0.871579 | 6.136209e-67 | -8.615850e-47 |
| Msa0140850 | Msa1362210 | 0.882125 | 1.354120e-70 | -8.615850e-47 |
| Msa0140850 | Msa1364480 | 0.834825 | 2.396297e-56 | -8.615850e-47 |
| Msa0140850 | Msa1365140 | 0.811091 | 8.324871e-51 | -8.615850e-47 |
| Msa0140850 | Msa1393000 | 0.819642 | 1.043499e-52 | -8.615850e-47 |
| Msa0140850 | Msa1413260 | 0.804265 | 2.347048e-49 | -8.615850e-47 |
| Msa0140850 | Msa1418770 | 0.807256 | 5.523560e-50 | -8.615850e-47 |
| Msa0140850 | Msa1456050 | 0.827120 | 1.863992e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 24 sgRNAs with CRISPR-Local
Find 78 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTTCTGGAATTTCTGAATT+TGG | 0.202611 | 1_3:+75390301 | Msa0140850:three_prime_UTR |
| TCTCTCTCGTATTGATGTTT+TGG | 0.256448 | 1_3:+75390185 | Msa0140850:three_prime_UTR |
| TTGATATTGTTATATTGTTT+TGG | 0.263717 | 1_3:+75390350 | Msa0140850:three_prime_UTR |
| TGGATCTCTGTCTCATCTTT+CGG | 0.332419 | 1_3:-75390051 | None:intergenic |
| TGCTTCTGCGCAGTCTCATT+AGG | 0.363924 | 1_3:+75389853 | Msa0140850:five_prime_UTR |
| ATTATGTGTATGTTTATTAG+TGG | 0.373896 | 1_3:+75390496 | Msa0140850:three_prime_UTR |
| AGTCCTAAAACCACAACAAT+TGG | 0.396442 | 1_3:-75390387 | None:intergenic |
| GTGTATGTTTATTAGTGGTT+AGG | 0.414479 | 1_3:+75390501 | Msa0140850:three_prime_UTR |
| CGCATCTTGTACCAATGAAA+TGG | 0.418125 | 1_3:+75390431 | Msa0140850:three_prime_UTR |
| GCGCAGAAGCAACTGCGATT+AGG | 0.428523 | 1_3:-75389841 | None:intergenic |
| CTTCGAGTGTTAGTCATGTT+AGG | 0.437316 | 1_3:+75390408 | Msa0140850:three_prime_UTR |
| AGCGTATGAGGAGGTTGAAG+AGG | 0.488055 | 1_3:+75390023 | Msa0140850:CDS |
| AAGAACACCAACATACTACT+TGG | 0.523061 | 1_3:-75390071 | None:intergenic |
| AGTGGAAGAAGAAGCGTATG+AGG | 0.538884 | 1_3:+75390011 | Msa0140850:intron |
| TTCAACAATCATGCGTGCCA+AGG | 0.540770 | 1_3:+75389903 | Msa0140850:exon |
| GCACGCATGATTGTTGAAAA+CGG | 0.548829 | 1_3:-75389898 | None:intergenic |
| ATATGTTAAGAGAGTAGTAT+CGG | 0.555824 | 1_3:+75390156 | Msa0140850:three_prime_UTR |
| TTGTTGAAATCCAATTGTTG+TGG | 0.563688 | 1_3:+75390377 | Msa0140850:three_prime_UTR |
| CAGAGATCCAAGTAGTATGT+TGG | 0.564238 | 1_3:+75390064 | Msa0140850:exon |
| AATATCAAAGATGAAAGCAT+AGG | 0.592277 | 1_3:-75390335 | None:intergenic |
| CCCATCACTTGTCTAAAATG+TGG | 0.601993 | 1_3:+75390574 | Msa0140850:three_prime_UTR |
| GACAAGTGATGGGATCACCA+TGG | 0.660164 | 1_3:-75390564 | None:intergenic |
| GGAAGAAGAAGCGTATGAGG+AGG | 0.665498 | 1_3:+75390014 | Msa0140850:CDS |
| ATAAGTCTGATTAAACAACA+CGG | 0.774353 | 1_3:-75390132 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTGTTATAGTTATAATAA+TGG | + | chr1_3:75389951-75389970 | Msa0140850:intron | 10.0% |
| !!! | TTTTGTTATAGTTATAATAA+TGG | + | chr1_3:75389951-75389970 | Msa0140850:intron | 10.0% |
| !! | AAAACAAAAATTAATTGCAA+TGG | - | chr1_3:75389935-75389954 | None:intergenic | 15.0% |
| !!! | TATAGTTATAATAATGGTTT+TGG | + | chr1_3:75389957-75389976 | Msa0140850:intron | 15.0% |
| !!! | TTTGATTTTGATTTTGATTT+TGG | + | chr1_3:75389980-75389999 | Msa0140850:intron | 15.0% |
| !!! | TGTTTATTTTTTTGATTTTG+CGG | + | chr1_3:75390280-75390299 | Msa0140850:three_prime_UTR | 15.0% |
| !!! | TTGATATTGTTATATTGTTT+TGG | + | chr1_3:75390350-75390369 | Msa0140850:three_prime_UTR | 15.0% |
| !! | AAAACAAAAATTAATTGCAA+TGG | - | chr1_3:75389935-75389954 | None:intergenic | 15.0% |
| !!! | TATAGTTATAATAATGGTTT+TGG | + | chr1_3:75389957-75389976 | Msa0140850:intron | 15.0% |
| !!! | TTTGATTTTGATTTTGATTT+TGG | + | chr1_3:75389980-75389999 | Msa0140850:intron | 15.0% |
| !!! | TGTTTATTTTTTTGATTTTG+CGG | + | chr1_3:75390280-75390299 | Msa0140850:three_prime_UTR | 15.0% |
| !!! | TTGATATTGTTATATTGTTT+TGG | + | chr1_3:75390350-75390369 | Msa0140850:three_prime_UTR | 15.0% |
| !!! | CTCAAAGATATTTTTCTTTA+TGG | + | chr1_3:75390219-75390238 | Msa0140850:three_prime_UTR | 20.0% |
| !! | TAAAAAATAAGCCATTTCAT+TGG | - | chr1_3:75390445-75390464 | None:intergenic | 20.0% |
| !! | ATTATGTGTATGTTTATTAG+TGG | + | chr1_3:75390496-75390515 | Msa0140850:three_prime_UTR | 20.0% |
| !!! | CTCAAAGATATTTTTCTTTA+TGG | + | chr1_3:75390219-75390238 | Msa0140850:three_prime_UTR | 20.0% |
| !! | TAAAAAATAAGCCATTTCAT+TGG | - | chr1_3:75390445-75390464 | None:intergenic | 20.0% |
| !! | ATTATGTGTATGTTTATTAG+TGG | + | chr1_3:75390496-75390515 | Msa0140850:three_prime_UTR | 20.0% |
| ! | ATAAGTCTGATTAAACAACA+CGG | - | chr1_3:75390135-75390154 | None:intergenic | 25.0% |
| ! | ATATGTTAAGAGAGTAGTAT+CGG | + | chr1_3:75390156-75390175 | Msa0140850:three_prime_UTR | 25.0% |
| !! | AATATCAAAGATGAAAGCAT+AGG | - | chr1_3:75390338-75390357 | None:intergenic | 25.0% |
| !!! | TATTGTTATATTGTTTTGGC+TGG | + | chr1_3:75390354-75390373 | Msa0140850:three_prime_UTR | 25.0% |
| ! | GTTTCTTAAAAACAAAAGTG+TGG | - | chr1_3:75390545-75390564 | None:intergenic | 25.0% |
| !!! | CTTTTGTTTTTAAGAAACCA+TGG | + | chr1_3:75390547-75390566 | Msa0140850:three_prime_UTR | 25.0% |
| ! | ATAAGTCTGATTAAACAACA+CGG | - | chr1_3:75390135-75390154 | None:intergenic | 25.0% |
| ! | ATATGTTAAGAGAGTAGTAT+CGG | + | chr1_3:75390156-75390175 | Msa0140850:three_prime_UTR | 25.0% |
| !! | AATATCAAAGATGAAAGCAT+AGG | - | chr1_3:75390338-75390357 | None:intergenic | 25.0% |
| !!! | TATTGTTATATTGTTTTGGC+TGG | + | chr1_3:75390354-75390373 | Msa0140850:three_prime_UTR | 25.0% |
| ! | GTTTCTTAAAAACAAAAGTG+TGG | - | chr1_3:75390545-75390564 | None:intergenic | 25.0% |
| !!! | CTTTTGTTTTTAAGAAACCA+TGG | + | chr1_3:75390547-75390566 | Msa0140850:three_prime_UTR | 25.0% |
| !!! | TTTTTTTGATTTTGCGGTTC+TGG | + | chr1_3:75390286-75390305 | Msa0140850:three_prime_UTR | 30.0% |
| TTGTTGAAATCCAATTGTTG+TGG | + | chr1_3:75390377-75390396 | Msa0140850:three_prime_UTR | 30.0% | |
| ! | AATCCAATTGTTGTGGTTTT+AGG | + | chr1_3:75390384-75390403 | Msa0140850:three_prime_UTR | 30.0% |
| GTGTATGTTTATTAGTGGTT+AGG | + | chr1_3:75390501-75390520 | Msa0140850:three_prime_UTR | 30.0% | |
| !!! | TTTTTTTGATTTTGCGGTTC+TGG | + | chr1_3:75390286-75390305 | Msa0140850:three_prime_UTR | 30.0% |
| TTGTTGAAATCCAATTGTTG+TGG | + | chr1_3:75390377-75390396 | Msa0140850:three_prime_UTR | 30.0% | |
| ! | AATCCAATTGTTGTGGTTTT+AGG | + | chr1_3:75390384-75390403 | Msa0140850:three_prime_UTR | 30.0% |
| GTGTATGTTTATTAGTGGTT+AGG | + | chr1_3:75390501-75390520 | Msa0140850:three_prime_UTR | 30.0% | |
| AATTGCAATGGATCTAACCT+TGG | - | chr1_3:75389923-75389942 | None:intergenic | 35.0% | |
| ! | TTGATTTTGGATTTGTGCAG+TGG | + | chr1_3:75389993-75390012 | Msa0140850:intron | 35.0% |
| AAGAACACCAACATACTACT+TGG | - | chr1_3:75390074-75390093 | None:intergenic | 35.0% | |
| !! | TCTCTCTCGTATTGATGTTT+TGG | + | chr1_3:75390185-75390204 | Msa0140850:three_prime_UTR | 35.0% |
| !! | GGTTCTGGAATTTCTGAATT+TGG | + | chr1_3:75390301-75390320 | Msa0140850:three_prime_UTR | 35.0% |
| AGTCCTAAAACCACAACAAT+TGG | - | chr1_3:75390390-75390409 | None:intergenic | 35.0% | |
| ! | CCACATTTTAGACAAGTGAT+GGG | - | chr1_3:75390577-75390596 | None:intergenic | 35.0% |
| AATTGCAATGGATCTAACCT+TGG | - | chr1_3:75389923-75389942 | None:intergenic | 35.0% | |
| ! | TTGATTTTGGATTTGTGCAG+TGG | + | chr1_3:75389993-75390012 | Msa0140850:intron | 35.0% |
| AAGAACACCAACATACTACT+TGG | - | chr1_3:75390074-75390093 | None:intergenic | 35.0% | |
| !! | TCTCTCTCGTATTGATGTTT+TGG | + | chr1_3:75390185-75390204 | Msa0140850:three_prime_UTR | 35.0% |
| !! | GGTTCTGGAATTTCTGAATT+TGG | + | chr1_3:75390301-75390320 | Msa0140850:three_prime_UTR | 35.0% |
| AGTCCTAAAACCACAACAAT+TGG | - | chr1_3:75390390-75390409 | None:intergenic | 35.0% | |
| ! | CCACATTTTAGACAAGTGAT+GGG | - | chr1_3:75390577-75390596 | None:intergenic | 35.0% |
| GCACGCATGATTGTTGAAAA+CGG | - | chr1_3:75389901-75389920 | None:intergenic | 40.0% | |
| TGGATCTCTGTCTCATCTTT+CGG | - | chr1_3:75390054-75390073 | None:intergenic | 40.0% | |
| CAGAGATCCAAGTAGTATGT+TGG | + | chr1_3:75390064-75390083 | Msa0140850:exon | 40.0% | |
| CTTCGAGTGTTAGTCATGTT+AGG | + | chr1_3:75390408-75390427 | Msa0140850:three_prime_UTR | 40.0% | |
| CGCATCTTGTACCAATGAAA+TGG | + | chr1_3:75390431-75390450 | Msa0140850:three_prime_UTR | 40.0% | |
| ! | CCCATCACTTGTCTAAAATG+TGG | + | chr1_3:75390574-75390593 | Msa0140850:three_prime_UTR | 40.0% |
| ! | GCCACATTTTAGACAAGTGA+TGG | - | chr1_3:75390578-75390597 | None:intergenic | 40.0% |
| GCACGCATGATTGTTGAAAA+CGG | - | chr1_3:75389901-75389920 | None:intergenic | 40.0% | |
| TGGATCTCTGTCTCATCTTT+CGG | - | chr1_3:75390054-75390073 | None:intergenic | 40.0% | |
| CAGAGATCCAAGTAGTATGT+TGG | + | chr1_3:75390064-75390083 | Msa0140850:exon | 40.0% | |
| CTTCGAGTGTTAGTCATGTT+AGG | + | chr1_3:75390408-75390427 | Msa0140850:three_prime_UTR | 40.0% | |
| CGCATCTTGTACCAATGAAA+TGG | + | chr1_3:75390431-75390450 | Msa0140850:three_prime_UTR | 40.0% | |
| ! | CCCATCACTTGTCTAAAATG+TGG | + | chr1_3:75390574-75390593 | Msa0140850:three_prime_UTR | 40.0% |
| ! | GCCACATTTTAGACAAGTGA+TGG | - | chr1_3:75390578-75390597 | None:intergenic | 40.0% |
| TTCAACAATCATGCGTGCCA+AGG | + | chr1_3:75389903-75389922 | Msa0140850:exon | 45.0% | |
| ! | AGTGGAAGAAGAAGCGTATG+AGG | + | chr1_3:75390011-75390030 | Msa0140850:intron | 45.0% |
| TTCAACAATCATGCGTGCCA+AGG | + | chr1_3:75389903-75389922 | Msa0140850:exon | 45.0% | |
| ! | AGTGGAAGAAGAAGCGTATG+AGG | + | chr1_3:75390011-75390030 | Msa0140850:intron | 45.0% |
| TGCTTCTGCGCAGTCTCATT+AGG | + | chr1_3:75389853-75389872 | Msa0140850:five_prime_UTR | 50.0% | |
| ! | GGAAGAAGAAGCGTATGAGG+AGG | + | chr1_3:75390014-75390033 | Msa0140850:CDS | 50.0% |
| AGCGTATGAGGAGGTTGAAG+AGG | + | chr1_3:75390023-75390042 | Msa0140850:CDS | 50.0% | |
| ! | GACAAGTGATGGGATCACCA+TGG | - | chr1_3:75390567-75390586 | None:intergenic | 50.0% |
| TGCTTCTGCGCAGTCTCATT+AGG | + | chr1_3:75389853-75389872 | Msa0140850:five_prime_UTR | 50.0% | |
| ! | GGAAGAAGAAGCGTATGAGG+AGG | + | chr1_3:75390014-75390033 | Msa0140850:CDS | 50.0% |
| AGCGTATGAGGAGGTTGAAG+AGG | + | chr1_3:75390023-75390042 | Msa0140850:CDS | 50.0% | |
| ! | GACAAGTGATGGGATCACCA+TGG | - | chr1_3:75390567-75390586 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 75389844 | 75390660 | 75389844 | ID=Msa0140850;Name=Msa0140850 |
| chr1_3 | mRNA | 75389844 | 75390660 | 75389844 | ID=Msa0140850-mRNA-1;Parent=Msa0140850;Name=Msa0140850-mRNA-1;_AED=0.00;_eAED=0.00;_QI=69|1|1|1|1|1|2|582|25 |
| chr1_3 | exon | 75389844 | 75389924 | 75389844 | ID=Msa0140850-mRNA-1:exon:26302;Parent=Msa0140850-mRNA-1 |
| chr1_3 | exon | 75390013 | 75390660 | 75390013 | ID=Msa0140850-mRNA-1:exon:26303;Parent=Msa0140850-mRNA-1 |
| chr1_3 | five_prime_UTR | 75389844 | 75389912 | 75389844 | ID=Msa0140850-mRNA-1:five_prime_utr;Parent=Msa0140850-mRNA-1 |
| chr1_3 | CDS | 75389913 | 75389924 | 75389913 | ID=Msa0140850-mRNA-1:cds;Parent=Msa0140850-mRNA-1 |
| chr1_3 | CDS | 75390013 | 75390078 | 75390013 | ID=Msa0140850-mRNA-1:cds;Parent=Msa0140850-mRNA-1 |
| chr1_3 | three_prime_UTR | 75390079 | 75390660 | 75390079 | ID=Msa0140850-mRNA-1:three_prime_utr;Parent=Msa0140850-mRNA-1 |
| Gene Sequence |
| Protein sequence |
