Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1165580 | XP_013450385.1 | 80.749 | 187 | 6 | 1 | 16 | 172 | 33 | 219 | 1.83e-95 | 286 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1165580 | sp|Q9LUQ6|RL192_ARATH | 65.027 | 183 | 28 | 4 | 16 | 168 | 33 | 209 | 2.29e-68 | 209 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1165580 | I3SA92 | 80.749 | 187 | 6 | 1 | 16 | 172 | 33 | 219 | 8.74e-96 | 286 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0032780 | Msa1165580 | 0.820957 | 5.212291e-53 | -8.615850e-47 |
Msa0114600 | Msa1165580 | 0.828161 | 1.048516e-54 | -8.615850e-47 |
Msa0685460 | Msa1165580 | 0.847842 | 8.950086e-60 | -8.615850e-47 |
Msa0685470 | Msa1165580 | 0.839193 | 1.834857e-57 | -8.615850e-47 |
Msa0745970 | Msa1165580 | 0.822866 | 1.883293e-53 | -8.615850e-47 |
Msa0140850 | Msa1165580 | 0.843051 | 1.776707e-58 | -8.615850e-47 |
Msa0425410 | Msa1165580 | 0.835409 | 1.706429e-56 | -8.615850e-47 |
Msa0436720 | Msa1165580 | 0.834877 | 2.324988e-56 | -8.615850e-47 |
Msa0250820 | Msa1165580 | 0.864465 | 1.192481e-64 | -8.615850e-47 |
Msa0250870 | Msa1165580 | 0.822517 | 2.270362e-53 | -8.615850e-47 |
Msa0336010 | Msa1165580 | 0.819551 | 1.094301e-52 | -8.615850e-47 |
Msa1126060 | Msa1165580 | 0.800633 | 1.315163e-48 | -8.615850e-47 |
Msa1163530 | Msa1165580 | 0.832128 | 1.127810e-55 | -8.615850e-47 |
Msa1165580 | Msa1295170 | 0.801329 | 9.476736e-49 | -8.615850e-47 |
Msa1165580 | Msa1362210 | 0.946569 | 3.595150e-105 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1165580 | MtrunA17_Chr7g0269621 | 80.749 | 187 | 6 | 1 | 16 | 172 | 33 | 219 | 1.68e-99 | 286 |
Msa1165580 | MtrunA17_Chr1g0195141 | 76.623 | 154 | 6 | 1 | 16 | 139 | 33 | 186 | 5.34e-64 | 196 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1165580 | AT3G16780.1 | 65.027 | 183 | 28 | 4 | 16 | 168 | 33 | 209 | 2.33e-69 | 209 |
Msa1165580 | AT1G02780.1 | 70.513 | 156 | 16 | 1 | 16 | 141 | 33 | 188 | 6.30e-60 | 186 |
Msa1165580 | AT4G02230.1 | 69.872 | 156 | 17 | 1 | 16 | 141 | 33 | 188 | 9.13e-60 | 185 |
Msa1165580 | AT4G16030.1 | 42.063 | 126 | 37 | 7 | 40 | 147 | 6 | 113 | 3.45e-11 | 57.8 |
Find 65 sgRNAs with CRISPR-Local
Find 242 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTCACGGCTGGCCTTGTTCT+TGG | 0.184984 | 7_4:-57516212 | None:intergenic |
ATAATAGTCCCTGTTCTAAA+TGG | 0.256274 | 7_4:+57516720 | Msa1165580:three_prime_UTR |
CATGTGCTTGTCAATCTTCT+TGG | 0.273354 | 7_4:-57516057 | None:intergenic |
TTAACCAGCTTCCTTATGTT+TGG | 0.313307 | 7_4:-57515114 | None:intergenic |
GGCCTTGTTCTTGGCACGTT+TGG | 0.315875 | 7_4:-57516203 | None:intergenic |
ATTATAATACTCACTGGGTC+TGG | 0.332335 | 7_4:-57516468 | None:intergenic |
TGTGGGAAGCCTTGCCTCTC+TGG | 0.339458 | 7_4:-57515973 | None:intergenic |
AGATTGCTTGGCTGAATTGT+TGG | 0.341299 | 7_4:+57516600 | Msa1165580:exon |
GATTGCTTGGCTGAATTGTT+GGG | 0.356970 | 7_4:+57516601 | Msa1165580:three_prime_UTR |
TTGTAAAATGTTTAGGGTCC+TGG | 0.366808 | 7_4:+57516388 | Msa1165580:intron |
TTAAGGATGGGTTTATAATC+AGG | 0.382568 | 7_4:+57515133 | Msa1165580:CDS |
AAAGGAAGACACTCTGGATA+TGG | 0.389292 | 7_4:+57515213 | Msa1165580:CDS |
CGCTGCAGTCTGAGATTGCT+TGG | 0.398433 | 7_4:+57516588 | Msa1165580:exon |
GTTGGCTTTGTTGCAGCAAC+AGG | 0.405850 | 7_4:-57516445 | None:intergenic |
AGCAAAACACCATTTAGAAC+AGG | 0.406056 | 7_4:-57516729 | None:intergenic |
TTTGAATGTGCATAGGTAAG+AGG | 0.427942 | 7_4:+57515943 | Msa1165580:intron |
AAACATAAGGAAGCTGGTTA+AGG | 0.436979 | 7_4:+57515116 | Msa1165580:CDS |
TGTCAATCTTCTTGGCCTCC+CGG | 0.437210 | 7_4:-57516049 | None:intergenic |
GACGTTTGCTCCGCAAGTAC+CGG | 0.438844 | 7_4:+57516030 | Msa1165580:CDS |
TCTGCTGGCTTCTCTCCTCC+AGG | 0.456457 | 7_4:-57516406 | None:intergenic |
AGCGTTCTCAAGTGCGGTCG+TGG | 0.462752 | 7_4:+57514946 | Msa1165580:CDS |
ACGAGACCTGGAGTGAATCT+TGG | 0.472398 | 7_4:-57515163 | None:intergenic |
AGCATGCTTCCTCTCACGGC+TGG | 0.480022 | 7_4:-57516224 | None:intergenic |
TTATAATACTCACTGGGTCT+GGG | 0.483209 | 7_4:-57516467 | None:intergenic |
TCCTAGCATGCTTCCTCTCA+CGG | 0.495294 | 7_4:-57516228 | None:intergenic |
TGACATGTACATGAAGGTTA+AGG | 0.501614 | 7_4:+57516085 | Msa1165580:CDS |
AATACTCACTGGGTCTGGGT+TGG | 0.502471 | 7_4:-57516463 | None:intergenic |
AAGAGGAAAGGAAGACACTC+TGG | 0.516416 | 7_4:+57515207 | Msa1165580:CDS |
TCTTGGCCTCCCGGTACTTG+CGG | 0.524961 | 7_4:-57516040 | None:intergenic |
GCAGCACTAGGAGCTTCTGC+TGG | 0.526670 | 7_4:-57516421 | None:intergenic |
ACGTTTGCTCCGCAAGTACC+GGG | 0.538079 | 7_4:+57516031 | Msa1165580:CDS |
CATTCTACGAGCACGAGACC+TGG | 0.539613 | 7_4:-57515175 | None:intergenic |
ATAAGGAAGCTGGTTAAGGA+TGG | 0.542795 | 7_4:+57515120 | Msa1165580:CDS |
TAGGCCAAACATAAGGAAGC+TGG | 0.544763 | 7_4:+57515110 | Msa1165580:intron |
CACGCATTCTTCTCATCCAA+AGG | 0.547413 | 7_4:-57516001 | None:intergenic |
GCCGTGAGAGGAAGCATGCT+AGG | 0.550143 | 7_4:+57516227 | Msa1165580:CDS |
GTCTCGTGCTCGTAGAATGA+AGG | 0.553438 | 7_4:+57515179 | Msa1165580:CDS |
ATGAAGGAAGCTAAGAGGAA+AGG | 0.554411 | 7_4:+57515195 | Msa1165580:CDS |
AATGTGCATAGGTAAGAGGA+AGG | 0.560538 | 7_4:+57515947 | Msa1165580:intron |
TAAGGAAGCTGGTTAAGGAT+GGG | 0.561785 | 7_4:+57515121 | Msa1165580:CDS |
GTAGAATGAAGGAAGCTAAG+AGG | 0.564014 | 7_4:+57515190 | Msa1165580:CDS |
GCAGCAACAGGTGCAGCACT+AGG | 0.565218 | 7_4:-57516433 | None:intergenic |
ACCGCAAAAGAAATCAAAGA+AGG | 0.568261 | 7_4:+57516564 | Msa1165580:CDS |
TGAGAGGAAGCATGCTAGGA+GGG | 0.573502 | 7_4:+57516231 | Msa1165580:CDS |
AGAACAAGGCCAGCCGTGAG+AGG | 0.576244 | 7_4:+57516215 | Msa1165580:CDS |
ACTTGAGAACGCTGGAAGCG+AGG | 0.578193 | 7_4:-57514936 | None:intergenic |
GGCCAAACGTGCCAAGAACA+AGG | 0.590924 | 7_4:+57516201 | Msa1165580:CDS |
TAACCTTCATGTACATGTCA+TGG | 0.601477 | 7_4:-57516082 | None:intergenic |
GACCTGGAGTGAATCTTGGT+GGG | 0.604962 | 7_4:-57515159 | None:intergenic |
TTTGCAATTGAGGGAGACCA+TGG | 0.606809 | 7_4:-57514909 | None:intergenic |
CTACTTTAGAACAGCAACTG+AGG | 0.612176 | 7_4:-57516631 | None:intergenic |
AACCCACCAAGATTCACTCC+AGG | 0.614800 | 7_4:+57515157 | Msa1165580:CDS |
AGACCTGGAGTGAATCTTGG+TGG | 0.619616 | 7_4:-57515160 | None:intergenic |
ACGACCGCACTTGAGAACGC+TGG | 0.620586 | 7_4:-57514944 | None:intergenic |
GTGAGAGGAAGCATGCTAGG+AGG | 0.624464 | 7_4:+57516230 | Msa1165580:CDS |
GCTTCCAGCGTTCTCAAGTG+CGG | 0.631493 | 7_4:+57514940 | Msa1165580:CDS |
TAAAATGTTTAGGGTCCTGG+AGG | 0.638656 | 7_4:+57516391 | Msa1165580:intron |
CAAGCAATCTCAGACTGCAG+CGG | 0.641887 | 7_4:-57516587 | None:intergenic |
GTACCATGACATGTACATGA+AGG | 0.655137 | 7_4:+57516079 | Msa1165580:CDS |
GAGGAAGCATGCTAGGAGGG+AGG | 0.658603 | 7_4:+57516234 | Msa1165580:CDS |
GGAAGGGTACCAGAGAGGCA+AGG | 0.658732 | 7_4:+57515964 | Msa1165580:CDS |
TAAGAGGAAGGGTACCAGAG+AGG | 0.678708 | 7_4:+57515959 | Msa1165580:CDS |
GCAAAACACCATTTAGAACA+GGG | 0.681819 | 7_4:-57516728 | None:intergenic |
ATGTGCATAGGTAAGAGGAA+GGG | 0.705490 | 7_4:+57515948 | Msa1165580:intron |
TTTGCTCCGCAAGTACCGGG+AGG | 0.725507 | 7_4:+57516034 | Msa1165580:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATAATTATAAACAAACAAAA+TGG | - | chr7_4:57515379-57515398 | None:intergenic | 10.0% |
!!! | ATTCTTTTTGAAATTATTAA+TGG | + | chr7_4:57516349-57516368 | Msa1165580:intron | 10.0% |
!! | ATAATTATAAACAAACAAAA+TGG | - | chr7_4:57515379-57515398 | None:intergenic | 10.0% |
!!! | ATTCTTTTTGAAATTATTAA+TGG | + | chr7_4:57516349-57516368 | Msa1165580:intron | 10.0% |
!! | ATCTATTCTTATTATGATTT+AGG | + | chr7_4:57515277-57515296 | Msa1165580:intron | 15.0% |
!! | ATATATTTCAGTTTACAAAA+TGG | + | chr7_4:57515689-57515708 | Msa1165580:intron | 15.0% |
!! | TAATAATTGTTTGAAAACTA+TGG | + | chr7_4:57515724-57515743 | Msa1165580:intron | 15.0% |
!!! | TTTTCTTTGTAAAATGTTTA+GGG | + | chr7_4:57516382-57516401 | Msa1165580:intron | 15.0% |
!! | AATAAATTATAATACTCACT+GGG | - | chr7_4:57516476-57516495 | None:intergenic | 15.0% |
!!! | ATGTTTTTATACTTTTCTAA+TGG | + | chr7_4:57516803-57516822 | Msa1165580:three_prime_UTR | 15.0% |
!! | ATCTATTCTTATTATGATTT+AGG | + | chr7_4:57515277-57515296 | Msa1165580:intron | 15.0% |
!! | ATATATTTCAGTTTACAAAA+TGG | + | chr7_4:57515689-57515708 | Msa1165580:intron | 15.0% |
!! | TAATAATTGTTTGAAAACTA+TGG | + | chr7_4:57515724-57515743 | Msa1165580:intron | 15.0% |
!!! | TTTTCTTTGTAAAATGTTTA+GGG | + | chr7_4:57516382-57516401 | Msa1165580:intron | 15.0% |
!! | AATAAATTATAATACTCACT+GGG | - | chr7_4:57516476-57516495 | None:intergenic | 15.0% |
!!! | ATGTTTTTATACTTTTCTAA+TGG | + | chr7_4:57516803-57516822 | Msa1165580:three_prime_UTR | 15.0% |
!!! | AAAGTTGATTTTGATTTTGT+AGG | + | chr7_4:57515091-57515110 | Msa1165580:intron | 20.0% |
!!! | TGAAATATATTTTGTTGTGA+CGG | - | chr7_4:57515679-57515698 | None:intergenic | 20.0% |
!!! | TCATATTTTACAAAACAACA+TGG | - | chr7_4:57515834-57515853 | None:intergenic | 20.0% |
!! | AAAGAATTTCAAGAAATCAT+AGG | - | chr7_4:57516283-57516302 | None:intergenic | 20.0% |
!!! | CTAAACATTTTACAAAGAAA+AGG | - | chr7_4:57516383-57516402 | None:intergenic | 20.0% |
!!! | CTTTTCTTTGTAAAATGTTT+AGG | + | chr7_4:57516381-57516400 | Msa1165580:intron | 20.0% |
!! | GAATAAATTATAATACTCAC+TGG | - | chr7_4:57516477-57516496 | None:intergenic | 20.0% |
!!! | TGTTTAATTTTTCAGTTATC+AGG | + | chr7_4:57516686-57516705 | Msa1165580:three_prime_UTR | 20.0% |
!!! | TTTTTGTTATGATTTTGTTG+CGG | + | chr7_4:57516753-57516772 | Msa1165580:three_prime_UTR | 20.0% |
!!! | AAAGTTGATTTTGATTTTGT+AGG | + | chr7_4:57515091-57515110 | Msa1165580:intron | 20.0% |
!!! | TGAAATATATTTTGTTGTGA+CGG | - | chr7_4:57515679-57515698 | None:intergenic | 20.0% |
!!! | TCATATTTTACAAAACAACA+TGG | - | chr7_4:57515834-57515853 | None:intergenic | 20.0% |
!! | AAAGAATTTCAAGAAATCAT+AGG | - | chr7_4:57516283-57516302 | None:intergenic | 20.0% |
!!! | CTAAACATTTTACAAAGAAA+AGG | - | chr7_4:57516383-57516402 | None:intergenic | 20.0% |
!!! | CTTTTCTTTGTAAAATGTTT+AGG | + | chr7_4:57516381-57516400 | Msa1165580:intron | 20.0% |
!! | GAATAAATTATAATACTCAC+TGG | - | chr7_4:57516477-57516496 | None:intergenic | 20.0% |
!!! | TGTTTAATTTTTCAGTTATC+AGG | + | chr7_4:57516686-57516705 | Msa1165580:three_prime_UTR | 20.0% |
!!! | TTTTTGTTATGATTTTGTTG+CGG | + | chr7_4:57516753-57516772 | Msa1165580:three_prime_UTR | 20.0% |
!! | ATTTAAAATGAAGCTAATCG+AGG | - | chr7_4:57515259-57515278 | None:intergenic | 25.0% |
! | GAAATACGAGTTTACATTTA+TGG | + | chr7_4:57515854-57515873 | Msa1165580:intron | 25.0% |
! | ACATAGATGTATATGATTTG+AGG | + | chr7_4:57516307-57516326 | Msa1165580:intron | 25.0% |
!! | ATTTAAAATGAAGCTAATCG+AGG | - | chr7_4:57515259-57515278 | None:intergenic | 25.0% |
! | GAAATACGAGTTTACATTTA+TGG | + | chr7_4:57515854-57515873 | Msa1165580:intron | 25.0% |
! | ACATAGATGTATATGATTTG+AGG | + | chr7_4:57516307-57516326 | Msa1165580:intron | 25.0% |
GAGATTTCGTTAACTTCATT+TGG | - | chr7_4:57514988-57515007 | None:intergenic | 30.0% | |
! | TTAAGGATGGGTTTATAATC+AGG | + | chr7_4:57515133-57515152 | Msa1165580:CDS | 30.0% |
! | AACTAATCAATCTAAGACAG+TGG | - | chr7_4:57515601-57515620 | None:intergenic | 30.0% |
!! | GTTAACATTTTGGTGTGAAA+AGG | - | chr7_4:57515648-57515667 | None:intergenic | 30.0% |
! | GGAGTGAAAAGTTAACATTT+TGG | - | chr7_4:57515658-57515677 | None:intergenic | 30.0% |
AAAAACTGTCAACAATTCCA+AGG | - | chr7_4:57515750-57515769 | None:intergenic | 30.0% | |
! | TAAGAATAAGAGAGTTCTGA+TGG | + | chr7_4:57516117-57516136 | Msa1165580:intron | 30.0% |
TTAAAAAACATCAGCATAGC+AGG | - | chr7_4:57516525-57516544 | None:intergenic | 30.0% | |
! | ATAATAGTCCCTGTTCTAAA+TGG | + | chr7_4:57516720-57516739 | Msa1165580:three_prime_UTR | 30.0% |
GAGATTTCGTTAACTTCATT+TGG | - | chr7_4:57514988-57515007 | None:intergenic | 30.0% | |
! | TTAAGGATGGGTTTATAATC+AGG | + | chr7_4:57515133-57515152 | Msa1165580:CDS | 30.0% |
! | AACTAATCAATCTAAGACAG+TGG | - | chr7_4:57515601-57515620 | None:intergenic | 30.0% |
!! | GTTAACATTTTGGTGTGAAA+AGG | - | chr7_4:57515648-57515667 | None:intergenic | 30.0% |
! | GGAGTGAAAAGTTAACATTT+TGG | - | chr7_4:57515658-57515677 | None:intergenic | 30.0% |
AAAAACTGTCAACAATTCCA+AGG | - | chr7_4:57515750-57515769 | None:intergenic | 30.0% | |
! | TAAGAATAAGAGAGTTCTGA+TGG | + | chr7_4:57516117-57516136 | Msa1165580:intron | 30.0% |
TTAAAAAACATCAGCATAGC+AGG | - | chr7_4:57516525-57516544 | None:intergenic | 30.0% | |
! | ATAATAGTCCCTGTTCTAAA+TGG | + | chr7_4:57516720-57516739 | Msa1165580:three_prime_UTR | 30.0% |
TGAAGTTAACGAAATCTCCA+TGG | + | chr7_4:57514990-57515009 | Msa1165580:intron | 35.0% | |
! | GATTTTGTAGGCCAAACATA+AGG | + | chr7_4:57515103-57515122 | Msa1165580:intron | 35.0% |
TTAACCAGCTTCCTTATGTT+TGG | - | chr7_4:57515117-57515136 | None:intergenic | 35.0% | |
AAACATAAGGAAGCTGGTTA+AGG | + | chr7_4:57515116-57515135 | Msa1165580:CDS | 35.0% | |
AATGAAGCTAATCGAGGTTA+GGG | - | chr7_4:57515253-57515272 | None:intergenic | 35.0% | |
AAATGAAGCTAATCGAGGTT+AGG | - | chr7_4:57515254-57515273 | None:intergenic | 35.0% | |
TTGTTTGAAAACTATGGCCT+TGG | + | chr7_4:57515730-57515749 | Msa1165580:intron | 35.0% | |
TTACTGAGTTGCTCATCAAT+TGG | + | chr7_4:57515800-57515819 | Msa1165580:intron | 35.0% | |
ACGAGTTTACATTTATGGAC+TGG | + | chr7_4:57515859-57515878 | Msa1165580:intron | 35.0% | |
GTGTTTGTTTGAATGTGCAT+AGG | + | chr7_4:57515936-57515955 | Msa1165580:intron | 35.0% | |
TTTGAATGTGCATAGGTAAG+AGG | + | chr7_4:57515943-57515962 | Msa1165580:intron | 35.0% | |
! | CTCATCCAAAGGATTTTTGT+GGG | - | chr7_4:57515993-57516012 | None:intergenic | 35.0% |
! | TCTCATCCAAAGGATTTTTG+TGG | - | chr7_4:57515994-57516013 | None:intergenic | 35.0% |
TAACCTTCATGTACATGTCA+TGG | - | chr7_4:57516085-57516104 | None:intergenic | 35.0% | |
TGACATGTACATGAAGGTTA+AGG | + | chr7_4:57516085-57516104 | Msa1165580:CDS | 35.0% | |
! | TTGTAAAATGTTTAGGGTCC+TGG | + | chr7_4:57516388-57516407 | Msa1165580:intron | 35.0% |
TTATAATACTCACTGGGTCT+GGG | - | chr7_4:57516470-57516489 | None:intergenic | 35.0% | |
ATTATAATACTCACTGGGTC+TGG | - | chr7_4:57516471-57516490 | None:intergenic | 35.0% | |
ACCGCAAAAGAAATCAAAGA+AGG | + | chr7_4:57516564-57516583 | Msa1165580:CDS | 35.0% | |
!! | GCCTTCTTTGATTTCTTTTG+CGG | - | chr7_4:57516568-57516587 | None:intergenic | 35.0% |
!! | GTTTTGACGAGTCTTTTTGT+TGG | + | chr7_4:57516653-57516672 | Msa1165580:three_prime_UTR | 35.0% |
! | GCAAAACACCATTTAGAACA+GGG | - | chr7_4:57516731-57516750 | None:intergenic | 35.0% |
! | AGCAAAACACCATTTAGAAC+AGG | - | chr7_4:57516732-57516751 | None:intergenic | 35.0% |
! | ATTTTGTTGCGGAAACACTT+TGG | + | chr7_4:57516764-57516783 | Msa1165580:three_prime_UTR | 35.0% |
TGAAGTTAACGAAATCTCCA+TGG | + | chr7_4:57514990-57515009 | Msa1165580:intron | 35.0% | |
! | GATTTTGTAGGCCAAACATA+AGG | + | chr7_4:57515103-57515122 | Msa1165580:intron | 35.0% |
TTAACCAGCTTCCTTATGTT+TGG | - | chr7_4:57515117-57515136 | None:intergenic | 35.0% | |
AAACATAAGGAAGCTGGTTA+AGG | + | chr7_4:57515116-57515135 | Msa1165580:CDS | 35.0% | |
AATGAAGCTAATCGAGGTTA+GGG | - | chr7_4:57515253-57515272 | None:intergenic | 35.0% | |
AAATGAAGCTAATCGAGGTT+AGG | - | chr7_4:57515254-57515273 | None:intergenic | 35.0% | |
TTGTTTGAAAACTATGGCCT+TGG | + | chr7_4:57515730-57515749 | Msa1165580:intron | 35.0% | |
TTACTGAGTTGCTCATCAAT+TGG | + | chr7_4:57515800-57515819 | Msa1165580:intron | 35.0% | |
ACGAGTTTACATTTATGGAC+TGG | + | chr7_4:57515859-57515878 | Msa1165580:intron | 35.0% | |
GTGTTTGTTTGAATGTGCAT+AGG | + | chr7_4:57515936-57515955 | Msa1165580:intron | 35.0% | |
TTTGAATGTGCATAGGTAAG+AGG | + | chr7_4:57515943-57515962 | Msa1165580:intron | 35.0% | |
! | CTCATCCAAAGGATTTTTGT+GGG | - | chr7_4:57515993-57516012 | None:intergenic | 35.0% |
! | TCTCATCCAAAGGATTTTTG+TGG | - | chr7_4:57515994-57516013 | None:intergenic | 35.0% |
TAACCTTCATGTACATGTCA+TGG | - | chr7_4:57516085-57516104 | None:intergenic | 35.0% | |
TGACATGTACATGAAGGTTA+AGG | + | chr7_4:57516085-57516104 | Msa1165580:CDS | 35.0% | |
! | TTGTAAAATGTTTAGGGTCC+TGG | + | chr7_4:57516388-57516407 | Msa1165580:intron | 35.0% |
TTATAATACTCACTGGGTCT+GGG | - | chr7_4:57516470-57516489 | None:intergenic | 35.0% | |
ATTATAATACTCACTGGGTC+TGG | - | chr7_4:57516471-57516490 | None:intergenic | 35.0% | |
ACCGCAAAAGAAATCAAAGA+AGG | + | chr7_4:57516564-57516583 | Msa1165580:CDS | 35.0% | |
!! | GCCTTCTTTGATTTCTTTTG+CGG | - | chr7_4:57516568-57516587 | None:intergenic | 35.0% |
!! | GTTTTGACGAGTCTTTTTGT+TGG | + | chr7_4:57516653-57516672 | Msa1165580:three_prime_UTR | 35.0% |
! | GCAAAACACCATTTAGAACA+GGG | - | chr7_4:57516731-57516750 | None:intergenic | 35.0% |
! | AGCAAAACACCATTTAGAAC+AGG | - | chr7_4:57516732-57516751 | None:intergenic | 35.0% |
! | ATTTTGTTGCGGAAACACTT+TGG | + | chr7_4:57516764-57516783 | Msa1165580:three_prime_UTR | 35.0% |
TAGCTTACGAGAATTAGCCA+TGG | - | chr7_4:57515010-57515029 | None:intergenic | 40.0% | |
ATAAGGAAGCTGGTTAAGGA+TGG | + | chr7_4:57515120-57515139 | Msa1165580:CDS | 40.0% | |
TAAGGAAGCTGGTTAAGGAT+GGG | + | chr7_4:57515121-57515140 | Msa1165580:CDS | 40.0% | |
GTAGAATGAAGGAAGCTAAG+AGG | + | chr7_4:57515190-57515209 | Msa1165580:CDS | 40.0% | |
ATGAAGGAAGCTAAGAGGAA+AGG | + | chr7_4:57515195-57515214 | Msa1165580:CDS | 40.0% | |
AAAGGAAGACACTCTGGATA+TGG | + | chr7_4:57515213-57515232 | Msa1165580:CDS | 40.0% | |
ATGAAGCTAATCGAGGTTAG+GGG | - | chr7_4:57515252-57515271 | None:intergenic | 40.0% | |
ATATCTCTAGATGACCAGAC+AGG | - | chr7_4:57515898-57515917 | None:intergenic | 40.0% | |
AATGTGCATAGGTAAGAGGA+AGG | + | chr7_4:57515947-57515966 | Msa1165580:intron | 40.0% | |
ATGTGCATAGGTAAGAGGAA+GGG | + | chr7_4:57515948-57515967 | Msa1165580:intron | 40.0% | |
CATGTGCTTGTCAATCTTCT+TGG | - | chr7_4:57516060-57516079 | None:intergenic | 40.0% | |
GTACCATGACATGTACATGA+AGG | + | chr7_4:57516079-57516098 | Msa1165580:CDS | 40.0% | |
! | TAAAATGTTTAGGGTCCTGG+AGG | + | chr7_4:57516391-57516410 | Msa1165580:intron | 40.0% |
AAAAACATCAGCATAGCAGG+CGG | - | chr7_4:57516522-57516541 | None:intergenic | 40.0% | |
AGATTGCTTGGCTGAATTGT+TGG | + | chr7_4:57516600-57516619 | Msa1165580:exon | 40.0% | |
GATTGCTTGGCTGAATTGTT+GGG | + | chr7_4:57516601-57516620 | Msa1165580:three_prime_UTR | 40.0% | |
!! | CTACTTTAGAACAGCAACTG+AGG | - | chr7_4:57516634-57516653 | None:intergenic | 40.0% |
TAGCTTACGAGAATTAGCCA+TGG | - | chr7_4:57515010-57515029 | None:intergenic | 40.0% | |
ATAAGGAAGCTGGTTAAGGA+TGG | + | chr7_4:57515120-57515139 | Msa1165580:CDS | 40.0% | |
TAAGGAAGCTGGTTAAGGAT+GGG | + | chr7_4:57515121-57515140 | Msa1165580:CDS | 40.0% | |
GTAGAATGAAGGAAGCTAAG+AGG | + | chr7_4:57515190-57515209 | Msa1165580:CDS | 40.0% | |
ATGAAGGAAGCTAAGAGGAA+AGG | + | chr7_4:57515195-57515214 | Msa1165580:CDS | 40.0% | |
AAAGGAAGACACTCTGGATA+TGG | + | chr7_4:57515213-57515232 | Msa1165580:CDS | 40.0% | |
ATGAAGCTAATCGAGGTTAG+GGG | - | chr7_4:57515252-57515271 | None:intergenic | 40.0% | |
ATATCTCTAGATGACCAGAC+AGG | - | chr7_4:57515898-57515917 | None:intergenic | 40.0% | |
AATGTGCATAGGTAAGAGGA+AGG | + | chr7_4:57515947-57515966 | Msa1165580:intron | 40.0% | |
ATGTGCATAGGTAAGAGGAA+GGG | + | chr7_4:57515948-57515967 | Msa1165580:intron | 40.0% | |
CATGTGCTTGTCAATCTTCT+TGG | - | chr7_4:57516060-57516079 | None:intergenic | 40.0% | |
GTACCATGACATGTACATGA+AGG | + | chr7_4:57516079-57516098 | Msa1165580:CDS | 40.0% | |
! | TAAAATGTTTAGGGTCCTGG+AGG | + | chr7_4:57516391-57516410 | Msa1165580:intron | 40.0% |
AAAAACATCAGCATAGCAGG+CGG | - | chr7_4:57516522-57516541 | None:intergenic | 40.0% | |
AGATTGCTTGGCTGAATTGT+TGG | + | chr7_4:57516600-57516619 | Msa1165580:exon | 40.0% | |
GATTGCTTGGCTGAATTGTT+GGG | + | chr7_4:57516601-57516620 | Msa1165580:three_prime_UTR | 40.0% | |
!! | CTACTTTAGAACAGCAACTG+AGG | - | chr7_4:57516634-57516653 | None:intergenic | 40.0% |
TAGGCCAAACATAAGGAAGC+TGG | + | chr7_4:57515110-57515129 | Msa1165580:intron | 45.0% | |
AAGAGGAAAGGAAGACACTC+TGG | + | chr7_4:57515207-57515226 | Msa1165580:CDS | 45.0% | |
GAAGACACTCTGGATATGGT+TGG | + | chr7_4:57515217-57515236 | Msa1165580:intron | 45.0% | |
GGCTTCCCACAAAAATCCTT+TGG | + | chr7_4:57515985-57516004 | Msa1165580:CDS | 45.0% | |
CACGCATTCTTCTCATCCAA+AGG | - | chr7_4:57516004-57516023 | None:intergenic | 45.0% | |
TCACAAGTCCAAAGCTGAGA+AGG | + | chr7_4:57516147-57516166 | Msa1165580:intron | 45.0% | |
TAGGCCAAACATAAGGAAGC+TGG | + | chr7_4:57515110-57515129 | Msa1165580:intron | 45.0% | |
AAGAGGAAAGGAAGACACTC+TGG | + | chr7_4:57515207-57515226 | Msa1165580:CDS | 45.0% | |
GAAGACACTCTGGATATGGT+TGG | + | chr7_4:57515217-57515236 | Msa1165580:intron | 45.0% | |
GGCTTCCCACAAAAATCCTT+TGG | + | chr7_4:57515985-57516004 | Msa1165580:CDS | 45.0% | |
CACGCATTCTTCTCATCCAA+AGG | - | chr7_4:57516004-57516023 | None:intergenic | 45.0% | |
TCACAAGTCCAAAGCTGAGA+AGG | + | chr7_4:57516147-57516166 | Msa1165580:intron | 45.0% | |
!!! | AAATAAATTTTATTTAAGAT+CGG | - | chr7_4:57515431-57515450 | None:intergenic | 5.0% |
!!! | AAATAAATTTTATTTAAGAT+CGG | - | chr7_4:57515431-57515450 | None:intergenic | 5.0% |
!! | CGAGGCGCTTTTGCAATTGA+GGG | - | chr7_4:57514921-57514940 | None:intergenic | 50.0% |
AACCCACCAAGATTCACTCC+AGG | + | chr7_4:57515157-57515176 | Msa1165580:CDS | 50.0% | |
GACCTGGAGTGAATCTTGGT+GGG | - | chr7_4:57515162-57515181 | None:intergenic | 50.0% | |
AGACCTGGAGTGAATCTTGG+TGG | - | chr7_4:57515163-57515182 | None:intergenic | 50.0% | |
ACGAGACCTGGAGTGAATCT+TGG | - | chr7_4:57515166-57515185 | None:intergenic | 50.0% | |
GTCTCGTGCTCGTAGAATGA+AGG | + | chr7_4:57515179-57515198 | Msa1165580:CDS | 50.0% | |
GCTCAAAGCATGTTCCTGTC+TGG | + | chr7_4:57515881-57515900 | Msa1165580:intron | 50.0% | |
!! | TAAGAGGAAGGGTACCAGAG+AGG | + | chr7_4:57515959-57515978 | Msa1165580:CDS | 50.0% |
TGTCAATCTTCTTGGCCTCC+CGG | - | chr7_4:57516052-57516071 | None:intergenic | 50.0% | |
! | CTCTCTAGCCTTCTCAGCTT+TGG | - | chr7_4:57516158-57516177 | None:intergenic | 50.0% |
GACCTTGTCTGACCAGTTTG+AGG | + | chr7_4:57516180-57516199 | Msa1165580:intron | 50.0% | |
TCCTAGCATGCTTCCTCTCA+CGG | - | chr7_4:57516231-57516250 | None:intergenic | 50.0% | |
! | TGAGAGGAAGCATGCTAGGA+GGG | + | chr7_4:57516231-57516250 | Msa1165580:CDS | 50.0% |
!! | GTTGGCTTTGTTGCAGCAAC+AGG | - | chr7_4:57516448-57516467 | None:intergenic | 50.0% |
AATACTCACTGGGTCTGGGT+TGG | - | chr7_4:57516466-57516485 | None:intergenic | 50.0% | |
CAAGCAATCTCAGACTGCAG+CGG | - | chr7_4:57516590-57516609 | None:intergenic | 50.0% | |
!! | CGAGGCGCTTTTGCAATTGA+GGG | - | chr7_4:57514921-57514940 | None:intergenic | 50.0% |
AACCCACCAAGATTCACTCC+AGG | + | chr7_4:57515157-57515176 | Msa1165580:CDS | 50.0% | |
GACCTGGAGTGAATCTTGGT+GGG | - | chr7_4:57515162-57515181 | None:intergenic | 50.0% | |
AGACCTGGAGTGAATCTTGG+TGG | - | chr7_4:57515163-57515182 | None:intergenic | 50.0% | |
ACGAGACCTGGAGTGAATCT+TGG | - | chr7_4:57515166-57515185 | None:intergenic | 50.0% | |
GTCTCGTGCTCGTAGAATGA+AGG | + | chr7_4:57515179-57515198 | Msa1165580:CDS | 50.0% | |
GCTCAAAGCATGTTCCTGTC+TGG | + | chr7_4:57515881-57515900 | Msa1165580:intron | 50.0% | |
!! | TAAGAGGAAGGGTACCAGAG+AGG | + | chr7_4:57515959-57515978 | Msa1165580:CDS | 50.0% |
TGTCAATCTTCTTGGCCTCC+CGG | - | chr7_4:57516052-57516071 | None:intergenic | 50.0% | |
! | CTCTCTAGCCTTCTCAGCTT+TGG | - | chr7_4:57516158-57516177 | None:intergenic | 50.0% |
GACCTTGTCTGACCAGTTTG+AGG | + | chr7_4:57516180-57516199 | Msa1165580:intron | 50.0% | |
TCCTAGCATGCTTCCTCTCA+CGG | - | chr7_4:57516231-57516250 | None:intergenic | 50.0% | |
! | TGAGAGGAAGCATGCTAGGA+GGG | + | chr7_4:57516231-57516250 | Msa1165580:CDS | 50.0% |
!! | GTTGGCTTTGTTGCAGCAAC+AGG | - | chr7_4:57516448-57516467 | None:intergenic | 50.0% |
AATACTCACTGGGTCTGGGT+TGG | - | chr7_4:57516466-57516485 | None:intergenic | 50.0% | |
CAAGCAATCTCAGACTGCAG+CGG | - | chr7_4:57516590-57516609 | None:intergenic | 50.0% | |
!! | GCGAGGCGCTTTTGCAATTG+AGG | - | chr7_4:57514922-57514941 | None:intergenic | 55.0% |
ACTTGAGAACGCTGGAAGCG+AGG | - | chr7_4:57514939-57514958 | None:intergenic | 55.0% | |
GCTTCCAGCGTTCTCAAGTG+CGG | + | chr7_4:57514940-57514959 | Msa1165580:CDS | 55.0% | |
AGTGCGGTCGTGGCAAAGTT+TGG | + | chr7_4:57514956-57514975 | Msa1165580:intron | 55.0% | |
CATTCTACGAGCACGAGACC+TGG | - | chr7_4:57515178-57515197 | None:intergenic | 55.0% | |
GACGTTTGCTCCGCAAGTAC+CGG | + | chr7_4:57516030-57516049 | Msa1165580:CDS | 55.0% | |
ACGTTTGCTCCGCAAGTACC+GGG | + | chr7_4:57516031-57516050 | Msa1165580:CDS | 55.0% | |
GGCCTCAAACTGGTCAGACA+AGG | - | chr7_4:57516185-57516204 | None:intergenic | 55.0% | |
TGGCACGTTTGGCCTCAAAC+TGG | - | chr7_4:57516195-57516214 | None:intergenic | 55.0% | |
GGCCAAACGTGCCAAGAACA+AGG | + | chr7_4:57516201-57516220 | Msa1165580:CDS | 55.0% | |
!! | GGCCTTGTTCTTGGCACGTT+TGG | - | chr7_4:57516206-57516225 | None:intergenic | 55.0% |
! | GTGAGAGGAAGCATGCTAGG+AGG | + | chr7_4:57516230-57516249 | Msa1165580:CDS | 55.0% |
ACATCAGCATAGCAGGCGGA+AGG | - | chr7_4:57516518-57516537 | None:intergenic | 55.0% | |
! | CGCTGCAGTCTGAGATTGCT+TGG | + | chr7_4:57516588-57516607 | Msa1165580:exon | 55.0% |
!! | GCGAGGCGCTTTTGCAATTG+AGG | - | chr7_4:57514922-57514941 | None:intergenic | 55.0% |
ACTTGAGAACGCTGGAAGCG+AGG | - | chr7_4:57514939-57514958 | None:intergenic | 55.0% | |
GCTTCCAGCGTTCTCAAGTG+CGG | + | chr7_4:57514940-57514959 | Msa1165580:CDS | 55.0% | |
AGTGCGGTCGTGGCAAAGTT+TGG | + | chr7_4:57514956-57514975 | Msa1165580:intron | 55.0% | |
CATTCTACGAGCACGAGACC+TGG | - | chr7_4:57515178-57515197 | None:intergenic | 55.0% | |
GACGTTTGCTCCGCAAGTAC+CGG | + | chr7_4:57516030-57516049 | Msa1165580:CDS | 55.0% | |
ACGTTTGCTCCGCAAGTACC+GGG | + | chr7_4:57516031-57516050 | Msa1165580:CDS | 55.0% | |
GGCCTCAAACTGGTCAGACA+AGG | - | chr7_4:57516185-57516204 | None:intergenic | 55.0% | |
TGGCACGTTTGGCCTCAAAC+TGG | - | chr7_4:57516195-57516214 | None:intergenic | 55.0% | |
GGCCAAACGTGCCAAGAACA+AGG | + | chr7_4:57516201-57516220 | Msa1165580:CDS | 55.0% | |
!! | GGCCTTGTTCTTGGCACGTT+TGG | - | chr7_4:57516206-57516225 | None:intergenic | 55.0% |
! | GTGAGAGGAAGCATGCTAGG+AGG | + | chr7_4:57516230-57516249 | Msa1165580:CDS | 55.0% |
ACATCAGCATAGCAGGCGGA+AGG | - | chr7_4:57516518-57516537 | None:intergenic | 55.0% | |
! | CGCTGCAGTCTGAGATTGCT+TGG | + | chr7_4:57516588-57516607 | Msa1165580:exon | 55.0% |
ACGACCGCACTTGAGAACGC+TGG | - | chr7_4:57514947-57514966 | None:intergenic | 60.0% | |
AGCGTTCTCAAGTGCGGTCG+TGG | + | chr7_4:57514946-57514965 | Msa1165580:CDS | 60.0% | |
!! | GGAAGGGTACCAGAGAGGCA+AGG | + | chr7_4:57515964-57515983 | Msa1165580:CDS | 60.0% |
TGTGGGAAGCCTTGCCTCTC+TGG | - | chr7_4:57515976-57515995 | None:intergenic | 60.0% | |
!! | TTTGCTCCGCAAGTACCGGG+AGG | + | chr7_4:57516034-57516053 | Msa1165580:CDS | 60.0% |
TCTTGGCCTCCCGGTACTTG+CGG | - | chr7_4:57516043-57516062 | None:intergenic | 60.0% | |
!! | CTCACGGCTGGCCTTGTTCT+TGG | - | chr7_4:57516215-57516234 | None:intergenic | 60.0% |
AGAACAAGGCCAGCCGTGAG+AGG | + | chr7_4:57516215-57516234 | Msa1165580:CDS | 60.0% | |
AGCATGCTTCCTCTCACGGC+TGG | - | chr7_4:57516227-57516246 | None:intergenic | 60.0% | |
! | GCCGTGAGAGGAAGCATGCT+AGG | + | chr7_4:57516227-57516246 | Msa1165580:CDS | 60.0% |
! | GAGGAAGCATGCTAGGAGGG+AGG | + | chr7_4:57516234-57516253 | Msa1165580:CDS | 60.0% |
!! | TCTGCTGGCTTCTCTCCTCC+AGG | - | chr7_4:57516409-57516428 | None:intergenic | 60.0% |
GCAGCACTAGGAGCTTCTGC+TGG | - | chr7_4:57516424-57516443 | None:intergenic | 60.0% | |
GCAGCAACAGGTGCAGCACT+AGG | - | chr7_4:57516436-57516455 | None:intergenic | 60.0% | |
ACGACCGCACTTGAGAACGC+TGG | - | chr7_4:57514947-57514966 | None:intergenic | 60.0% | |
AGCGTTCTCAAGTGCGGTCG+TGG | + | chr7_4:57514946-57514965 | Msa1165580:CDS | 60.0% | |
!! | GGAAGGGTACCAGAGAGGCA+AGG | + | chr7_4:57515964-57515983 | Msa1165580:CDS | 60.0% |
TGTGGGAAGCCTTGCCTCTC+TGG | - | chr7_4:57515976-57515995 | None:intergenic | 60.0% | |
!! | TTTGCTCCGCAAGTACCGGG+AGG | + | chr7_4:57516034-57516053 | Msa1165580:CDS | 60.0% |
TCTTGGCCTCCCGGTACTTG+CGG | - | chr7_4:57516043-57516062 | None:intergenic | 60.0% | |
!! | CTCACGGCTGGCCTTGTTCT+TGG | - | chr7_4:57516215-57516234 | None:intergenic | 60.0% |
AGAACAAGGCCAGCCGTGAG+AGG | + | chr7_4:57516215-57516234 | Msa1165580:CDS | 60.0% | |
AGCATGCTTCCTCTCACGGC+TGG | - | chr7_4:57516227-57516246 | None:intergenic | 60.0% | |
! | GCCGTGAGAGGAAGCATGCT+AGG | + | chr7_4:57516227-57516246 | Msa1165580:CDS | 60.0% |
! | GAGGAAGCATGCTAGGAGGG+AGG | + | chr7_4:57516234-57516253 | Msa1165580:CDS | 60.0% |
!! | TCTGCTGGCTTCTCTCCTCC+AGG | - | chr7_4:57516409-57516428 | None:intergenic | 60.0% |
GCAGCACTAGGAGCTTCTGC+TGG | - | chr7_4:57516424-57516443 | None:intergenic | 60.0% | |
GCAGCAACAGGTGCAGCACT+AGG | - | chr7_4:57516436-57516455 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7_4 | gene | 57514911 | 57516846 | 57514911 | ID=Msa1165580;Name=Msa1165580 |
chr7_4 | mRNA | 57514911 | 57516846 | 57514911 | ID=Msa1165580-mRNA-1;Parent=Msa1165580;Name=Msa1165580-mRNA-1;_AED=0.20;_eAED=0.26;_QI=0|0.6|0.5|1|1|1|6|246|172 |
chr7_4 | exon | 57514911 | 57514972 | 57514911 | ID=Msa1165580-mRNA-1:exon:17428;Parent=Msa1165580-mRNA-1 |
chr7_4 | exon | 57515113 | 57515234 | 57515113 | ID=Msa1165580-mRNA-1:exon:17429;Parent=Msa1165580-mRNA-1 |
chr7_4 | exon | 57515958 | 57516106 | 57515958 | ID=Msa1165580-mRNA-1:exon:17430;Parent=Msa1165580-mRNA-1 |
chr7_4 | exon | 57516196 | 57516270 | 57516196 | ID=Msa1165580-mRNA-1:exon:17431;Parent=Msa1165580-mRNA-1 |
chr7_4 | exon | 57516403 | 57516476 | 57516403 | ID=Msa1165580-mRNA-1:exon:17432;Parent=Msa1165580-mRNA-1 |
chr7_4 | exon | 57516564 | 57516846 | 57516564 | ID=Msa1165580-mRNA-1:exon:17433;Parent=Msa1165580-mRNA-1 |
chr7_4 | CDS | 57514911 | 57514972 | 57514911 | ID=Msa1165580-mRNA-1:cds;Parent=Msa1165580-mRNA-1 |
chr7_4 | CDS | 57515113 | 57515234 | 57515113 | ID=Msa1165580-mRNA-1:cds;Parent=Msa1165580-mRNA-1 |
chr7_4 | CDS | 57515958 | 57516106 | 57515958 | ID=Msa1165580-mRNA-1:cds;Parent=Msa1165580-mRNA-1 |
chr7_4 | CDS | 57516196 | 57516270 | 57516196 | ID=Msa1165580-mRNA-1:cds;Parent=Msa1165580-mRNA-1 |
chr7_4 | CDS | 57516403 | 57516476 | 57516403 | ID=Msa1165580-mRNA-1:cds;Parent=Msa1165580-mRNA-1 |
chr7_4 | CDS | 57516564 | 57516600 | 57516564 | ID=Msa1165580-mRNA-1:cds;Parent=Msa1165580-mRNA-1 |
chr7_4 | three_prime_UTR | 57516601 | 57516846 | 57516601 | ID=Msa1165580-mRNA-1:three_prime_utr;Parent=Msa1165580-mRNA-1 |
Gene Sequence |
Protein sequence |