AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1165580


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1165580 MtrunA17_Chr7g0269621 80.749 187 6 1 16 172 33 219 1.68e-99 286
Msa1165580 MtrunA17_Chr1g0195141 76.623 154 6 1 16 139 33 186 5.34e-64 196
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1165580 AT3G16780.1 65.027 183 28 4 16 168 33 209 2.33e-69 209
Msa1165580 AT1G02780.1 70.513 156 16 1 16 141 33 188 6.30e-60 186
Msa1165580 AT4G02230.1 69.872 156 17 1 16 141 33 188 9.13e-60 185
Msa1165580 AT4G16030.1 42.063 126 37 7 40 147 6 113 3.45e-11 57.8

Find 65 sgRNAs with CRISPR-Local

Find 242 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCACGGCTGGCCTTGTTCT+TGG 0.184984 7_4:-57516212 None:intergenic
ATAATAGTCCCTGTTCTAAA+TGG 0.256274 7_4:+57516720 Msa1165580:three_prime_UTR
CATGTGCTTGTCAATCTTCT+TGG 0.273354 7_4:-57516057 None:intergenic
TTAACCAGCTTCCTTATGTT+TGG 0.313307 7_4:-57515114 None:intergenic
GGCCTTGTTCTTGGCACGTT+TGG 0.315875 7_4:-57516203 None:intergenic
ATTATAATACTCACTGGGTC+TGG 0.332335 7_4:-57516468 None:intergenic
TGTGGGAAGCCTTGCCTCTC+TGG 0.339458 7_4:-57515973 None:intergenic
AGATTGCTTGGCTGAATTGT+TGG 0.341299 7_4:+57516600 Msa1165580:exon
GATTGCTTGGCTGAATTGTT+GGG 0.356970 7_4:+57516601 Msa1165580:three_prime_UTR
TTGTAAAATGTTTAGGGTCC+TGG 0.366808 7_4:+57516388 Msa1165580:intron
TTAAGGATGGGTTTATAATC+AGG 0.382568 7_4:+57515133 Msa1165580:CDS
AAAGGAAGACACTCTGGATA+TGG 0.389292 7_4:+57515213 Msa1165580:CDS
CGCTGCAGTCTGAGATTGCT+TGG 0.398433 7_4:+57516588 Msa1165580:exon
GTTGGCTTTGTTGCAGCAAC+AGG 0.405850 7_4:-57516445 None:intergenic
AGCAAAACACCATTTAGAAC+AGG 0.406056 7_4:-57516729 None:intergenic
TTTGAATGTGCATAGGTAAG+AGG 0.427942 7_4:+57515943 Msa1165580:intron
AAACATAAGGAAGCTGGTTA+AGG 0.436979 7_4:+57515116 Msa1165580:CDS
TGTCAATCTTCTTGGCCTCC+CGG 0.437210 7_4:-57516049 None:intergenic
GACGTTTGCTCCGCAAGTAC+CGG 0.438844 7_4:+57516030 Msa1165580:CDS
TCTGCTGGCTTCTCTCCTCC+AGG 0.456457 7_4:-57516406 None:intergenic
AGCGTTCTCAAGTGCGGTCG+TGG 0.462752 7_4:+57514946 Msa1165580:CDS
ACGAGACCTGGAGTGAATCT+TGG 0.472398 7_4:-57515163 None:intergenic
AGCATGCTTCCTCTCACGGC+TGG 0.480022 7_4:-57516224 None:intergenic
TTATAATACTCACTGGGTCT+GGG 0.483209 7_4:-57516467 None:intergenic
TCCTAGCATGCTTCCTCTCA+CGG 0.495294 7_4:-57516228 None:intergenic
TGACATGTACATGAAGGTTA+AGG 0.501614 7_4:+57516085 Msa1165580:CDS
AATACTCACTGGGTCTGGGT+TGG 0.502471 7_4:-57516463 None:intergenic
AAGAGGAAAGGAAGACACTC+TGG 0.516416 7_4:+57515207 Msa1165580:CDS
TCTTGGCCTCCCGGTACTTG+CGG 0.524961 7_4:-57516040 None:intergenic
GCAGCACTAGGAGCTTCTGC+TGG 0.526670 7_4:-57516421 None:intergenic
ACGTTTGCTCCGCAAGTACC+GGG 0.538079 7_4:+57516031 Msa1165580:CDS
CATTCTACGAGCACGAGACC+TGG 0.539613 7_4:-57515175 None:intergenic
ATAAGGAAGCTGGTTAAGGA+TGG 0.542795 7_4:+57515120 Msa1165580:CDS
TAGGCCAAACATAAGGAAGC+TGG 0.544763 7_4:+57515110 Msa1165580:intron
CACGCATTCTTCTCATCCAA+AGG 0.547413 7_4:-57516001 None:intergenic
GCCGTGAGAGGAAGCATGCT+AGG 0.550143 7_4:+57516227 Msa1165580:CDS
GTCTCGTGCTCGTAGAATGA+AGG 0.553438 7_4:+57515179 Msa1165580:CDS
ATGAAGGAAGCTAAGAGGAA+AGG 0.554411 7_4:+57515195 Msa1165580:CDS
AATGTGCATAGGTAAGAGGA+AGG 0.560538 7_4:+57515947 Msa1165580:intron
TAAGGAAGCTGGTTAAGGAT+GGG 0.561785 7_4:+57515121 Msa1165580:CDS
GTAGAATGAAGGAAGCTAAG+AGG 0.564014 7_4:+57515190 Msa1165580:CDS
GCAGCAACAGGTGCAGCACT+AGG 0.565218 7_4:-57516433 None:intergenic
ACCGCAAAAGAAATCAAAGA+AGG 0.568261 7_4:+57516564 Msa1165580:CDS
TGAGAGGAAGCATGCTAGGA+GGG 0.573502 7_4:+57516231 Msa1165580:CDS
AGAACAAGGCCAGCCGTGAG+AGG 0.576244 7_4:+57516215 Msa1165580:CDS
ACTTGAGAACGCTGGAAGCG+AGG 0.578193 7_4:-57514936 None:intergenic
GGCCAAACGTGCCAAGAACA+AGG 0.590924 7_4:+57516201 Msa1165580:CDS
TAACCTTCATGTACATGTCA+TGG 0.601477 7_4:-57516082 None:intergenic
GACCTGGAGTGAATCTTGGT+GGG 0.604962 7_4:-57515159 None:intergenic
TTTGCAATTGAGGGAGACCA+TGG 0.606809 7_4:-57514909 None:intergenic
CTACTTTAGAACAGCAACTG+AGG 0.612176 7_4:-57516631 None:intergenic
AACCCACCAAGATTCACTCC+AGG 0.614800 7_4:+57515157 Msa1165580:CDS
AGACCTGGAGTGAATCTTGG+TGG 0.619616 7_4:-57515160 None:intergenic
ACGACCGCACTTGAGAACGC+TGG 0.620586 7_4:-57514944 None:intergenic
GTGAGAGGAAGCATGCTAGG+AGG 0.624464 7_4:+57516230 Msa1165580:CDS
GCTTCCAGCGTTCTCAAGTG+CGG 0.631493 7_4:+57514940 Msa1165580:CDS
TAAAATGTTTAGGGTCCTGG+AGG 0.638656 7_4:+57516391 Msa1165580:intron
CAAGCAATCTCAGACTGCAG+CGG 0.641887 7_4:-57516587 None:intergenic
GTACCATGACATGTACATGA+AGG 0.655137 7_4:+57516079 Msa1165580:CDS
GAGGAAGCATGCTAGGAGGG+AGG 0.658603 7_4:+57516234 Msa1165580:CDS
GGAAGGGTACCAGAGAGGCA+AGG 0.658732 7_4:+57515964 Msa1165580:CDS
TAAGAGGAAGGGTACCAGAG+AGG 0.678708 7_4:+57515959 Msa1165580:CDS
GCAAAACACCATTTAGAACA+GGG 0.681819 7_4:-57516728 None:intergenic
ATGTGCATAGGTAAGAGGAA+GGG 0.705490 7_4:+57515948 Msa1165580:intron
TTTGCTCCGCAAGTACCGGG+AGG 0.725507 7_4:+57516034 Msa1165580:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATTATAAACAAACAAAA+TGG - chr7_4:57515379-57515398 None:intergenic 10.0%
!!! ATTCTTTTTGAAATTATTAA+TGG + chr7_4:57516349-57516368 Msa1165580:intron 10.0%
!! ATAATTATAAACAAACAAAA+TGG - chr7_4:57515379-57515398 None:intergenic 10.0%
!!! ATTCTTTTTGAAATTATTAA+TGG + chr7_4:57516349-57516368 Msa1165580:intron 10.0%
!! ATCTATTCTTATTATGATTT+AGG + chr7_4:57515277-57515296 Msa1165580:intron 15.0%
!! ATATATTTCAGTTTACAAAA+TGG + chr7_4:57515689-57515708 Msa1165580:intron 15.0%
!! TAATAATTGTTTGAAAACTA+TGG + chr7_4:57515724-57515743 Msa1165580:intron 15.0%
!!! TTTTCTTTGTAAAATGTTTA+GGG + chr7_4:57516382-57516401 Msa1165580:intron 15.0%
!! AATAAATTATAATACTCACT+GGG - chr7_4:57516476-57516495 None:intergenic 15.0%
!!! ATGTTTTTATACTTTTCTAA+TGG + chr7_4:57516803-57516822 Msa1165580:three_prime_UTR 15.0%
!! ATCTATTCTTATTATGATTT+AGG + chr7_4:57515277-57515296 Msa1165580:intron 15.0%
!! ATATATTTCAGTTTACAAAA+TGG + chr7_4:57515689-57515708 Msa1165580:intron 15.0%
!! TAATAATTGTTTGAAAACTA+TGG + chr7_4:57515724-57515743 Msa1165580:intron 15.0%
!!! TTTTCTTTGTAAAATGTTTA+GGG + chr7_4:57516382-57516401 Msa1165580:intron 15.0%
!! AATAAATTATAATACTCACT+GGG - chr7_4:57516476-57516495 None:intergenic 15.0%
!!! ATGTTTTTATACTTTTCTAA+TGG + chr7_4:57516803-57516822 Msa1165580:three_prime_UTR 15.0%
!!! AAAGTTGATTTTGATTTTGT+AGG + chr7_4:57515091-57515110 Msa1165580:intron 20.0%
!!! TGAAATATATTTTGTTGTGA+CGG - chr7_4:57515679-57515698 None:intergenic 20.0%
!!! TCATATTTTACAAAACAACA+TGG - chr7_4:57515834-57515853 None:intergenic 20.0%
!! AAAGAATTTCAAGAAATCAT+AGG - chr7_4:57516283-57516302 None:intergenic 20.0%
!!! CTAAACATTTTACAAAGAAA+AGG - chr7_4:57516383-57516402 None:intergenic 20.0%
!!! CTTTTCTTTGTAAAATGTTT+AGG + chr7_4:57516381-57516400 Msa1165580:intron 20.0%
!! GAATAAATTATAATACTCAC+TGG - chr7_4:57516477-57516496 None:intergenic 20.0%
!!! TGTTTAATTTTTCAGTTATC+AGG + chr7_4:57516686-57516705 Msa1165580:three_prime_UTR 20.0%
!!! TTTTTGTTATGATTTTGTTG+CGG + chr7_4:57516753-57516772 Msa1165580:three_prime_UTR 20.0%
!!! AAAGTTGATTTTGATTTTGT+AGG + chr7_4:57515091-57515110 Msa1165580:intron 20.0%
!!! TGAAATATATTTTGTTGTGA+CGG - chr7_4:57515679-57515698 None:intergenic 20.0%
!!! TCATATTTTACAAAACAACA+TGG - chr7_4:57515834-57515853 None:intergenic 20.0%
!! AAAGAATTTCAAGAAATCAT+AGG - chr7_4:57516283-57516302 None:intergenic 20.0%
!!! CTAAACATTTTACAAAGAAA+AGG - chr7_4:57516383-57516402 None:intergenic 20.0%
!!! CTTTTCTTTGTAAAATGTTT+AGG + chr7_4:57516381-57516400 Msa1165580:intron 20.0%
!! GAATAAATTATAATACTCAC+TGG - chr7_4:57516477-57516496 None:intergenic 20.0%
!!! TGTTTAATTTTTCAGTTATC+AGG + chr7_4:57516686-57516705 Msa1165580:three_prime_UTR 20.0%
!!! TTTTTGTTATGATTTTGTTG+CGG + chr7_4:57516753-57516772 Msa1165580:three_prime_UTR 20.0%
!! ATTTAAAATGAAGCTAATCG+AGG - chr7_4:57515259-57515278 None:intergenic 25.0%
! GAAATACGAGTTTACATTTA+TGG + chr7_4:57515854-57515873 Msa1165580:intron 25.0%
! ACATAGATGTATATGATTTG+AGG + chr7_4:57516307-57516326 Msa1165580:intron 25.0%
!! ATTTAAAATGAAGCTAATCG+AGG - chr7_4:57515259-57515278 None:intergenic 25.0%
! GAAATACGAGTTTACATTTA+TGG + chr7_4:57515854-57515873 Msa1165580:intron 25.0%
! ACATAGATGTATATGATTTG+AGG + chr7_4:57516307-57516326 Msa1165580:intron 25.0%
GAGATTTCGTTAACTTCATT+TGG - chr7_4:57514988-57515007 None:intergenic 30.0%
! TTAAGGATGGGTTTATAATC+AGG + chr7_4:57515133-57515152 Msa1165580:CDS 30.0%
! AACTAATCAATCTAAGACAG+TGG - chr7_4:57515601-57515620 None:intergenic 30.0%
!! GTTAACATTTTGGTGTGAAA+AGG - chr7_4:57515648-57515667 None:intergenic 30.0%
! GGAGTGAAAAGTTAACATTT+TGG - chr7_4:57515658-57515677 None:intergenic 30.0%
AAAAACTGTCAACAATTCCA+AGG - chr7_4:57515750-57515769 None:intergenic 30.0%
! TAAGAATAAGAGAGTTCTGA+TGG + chr7_4:57516117-57516136 Msa1165580:intron 30.0%
TTAAAAAACATCAGCATAGC+AGG - chr7_4:57516525-57516544 None:intergenic 30.0%
! ATAATAGTCCCTGTTCTAAA+TGG + chr7_4:57516720-57516739 Msa1165580:three_prime_UTR 30.0%
GAGATTTCGTTAACTTCATT+TGG - chr7_4:57514988-57515007 None:intergenic 30.0%
! TTAAGGATGGGTTTATAATC+AGG + chr7_4:57515133-57515152 Msa1165580:CDS 30.0%
! AACTAATCAATCTAAGACAG+TGG - chr7_4:57515601-57515620 None:intergenic 30.0%
!! GTTAACATTTTGGTGTGAAA+AGG - chr7_4:57515648-57515667 None:intergenic 30.0%
! GGAGTGAAAAGTTAACATTT+TGG - chr7_4:57515658-57515677 None:intergenic 30.0%
AAAAACTGTCAACAATTCCA+AGG - chr7_4:57515750-57515769 None:intergenic 30.0%
! TAAGAATAAGAGAGTTCTGA+TGG + chr7_4:57516117-57516136 Msa1165580:intron 30.0%
TTAAAAAACATCAGCATAGC+AGG - chr7_4:57516525-57516544 None:intergenic 30.0%
! ATAATAGTCCCTGTTCTAAA+TGG + chr7_4:57516720-57516739 Msa1165580:three_prime_UTR 30.0%
TGAAGTTAACGAAATCTCCA+TGG + chr7_4:57514990-57515009 Msa1165580:intron 35.0%
! GATTTTGTAGGCCAAACATA+AGG + chr7_4:57515103-57515122 Msa1165580:intron 35.0%
TTAACCAGCTTCCTTATGTT+TGG - chr7_4:57515117-57515136 None:intergenic 35.0%
AAACATAAGGAAGCTGGTTA+AGG + chr7_4:57515116-57515135 Msa1165580:CDS 35.0%
AATGAAGCTAATCGAGGTTA+GGG - chr7_4:57515253-57515272 None:intergenic 35.0%
AAATGAAGCTAATCGAGGTT+AGG - chr7_4:57515254-57515273 None:intergenic 35.0%
TTGTTTGAAAACTATGGCCT+TGG + chr7_4:57515730-57515749 Msa1165580:intron 35.0%
TTACTGAGTTGCTCATCAAT+TGG + chr7_4:57515800-57515819 Msa1165580:intron 35.0%
ACGAGTTTACATTTATGGAC+TGG + chr7_4:57515859-57515878 Msa1165580:intron 35.0%
GTGTTTGTTTGAATGTGCAT+AGG + chr7_4:57515936-57515955 Msa1165580:intron 35.0%
TTTGAATGTGCATAGGTAAG+AGG + chr7_4:57515943-57515962 Msa1165580:intron 35.0%
! CTCATCCAAAGGATTTTTGT+GGG - chr7_4:57515993-57516012 None:intergenic 35.0%
! TCTCATCCAAAGGATTTTTG+TGG - chr7_4:57515994-57516013 None:intergenic 35.0%
TAACCTTCATGTACATGTCA+TGG - chr7_4:57516085-57516104 None:intergenic 35.0%
TGACATGTACATGAAGGTTA+AGG + chr7_4:57516085-57516104 Msa1165580:CDS 35.0%
! TTGTAAAATGTTTAGGGTCC+TGG + chr7_4:57516388-57516407 Msa1165580:intron 35.0%
TTATAATACTCACTGGGTCT+GGG - chr7_4:57516470-57516489 None:intergenic 35.0%
ATTATAATACTCACTGGGTC+TGG - chr7_4:57516471-57516490 None:intergenic 35.0%
ACCGCAAAAGAAATCAAAGA+AGG + chr7_4:57516564-57516583 Msa1165580:CDS 35.0%
!! GCCTTCTTTGATTTCTTTTG+CGG - chr7_4:57516568-57516587 None:intergenic 35.0%
!! GTTTTGACGAGTCTTTTTGT+TGG + chr7_4:57516653-57516672 Msa1165580:three_prime_UTR 35.0%
! GCAAAACACCATTTAGAACA+GGG - chr7_4:57516731-57516750 None:intergenic 35.0%
! AGCAAAACACCATTTAGAAC+AGG - chr7_4:57516732-57516751 None:intergenic 35.0%
! ATTTTGTTGCGGAAACACTT+TGG + chr7_4:57516764-57516783 Msa1165580:three_prime_UTR 35.0%
TGAAGTTAACGAAATCTCCA+TGG + chr7_4:57514990-57515009 Msa1165580:intron 35.0%
! GATTTTGTAGGCCAAACATA+AGG + chr7_4:57515103-57515122 Msa1165580:intron 35.0%
TTAACCAGCTTCCTTATGTT+TGG - chr7_4:57515117-57515136 None:intergenic 35.0%
AAACATAAGGAAGCTGGTTA+AGG + chr7_4:57515116-57515135 Msa1165580:CDS 35.0%
AATGAAGCTAATCGAGGTTA+GGG - chr7_4:57515253-57515272 None:intergenic 35.0%
AAATGAAGCTAATCGAGGTT+AGG - chr7_4:57515254-57515273 None:intergenic 35.0%
TTGTTTGAAAACTATGGCCT+TGG + chr7_4:57515730-57515749 Msa1165580:intron 35.0%
TTACTGAGTTGCTCATCAAT+TGG + chr7_4:57515800-57515819 Msa1165580:intron 35.0%
ACGAGTTTACATTTATGGAC+TGG + chr7_4:57515859-57515878 Msa1165580:intron 35.0%
GTGTTTGTTTGAATGTGCAT+AGG + chr7_4:57515936-57515955 Msa1165580:intron 35.0%
TTTGAATGTGCATAGGTAAG+AGG + chr7_4:57515943-57515962 Msa1165580:intron 35.0%
! CTCATCCAAAGGATTTTTGT+GGG - chr7_4:57515993-57516012 None:intergenic 35.0%
! TCTCATCCAAAGGATTTTTG+TGG - chr7_4:57515994-57516013 None:intergenic 35.0%
TAACCTTCATGTACATGTCA+TGG - chr7_4:57516085-57516104 None:intergenic 35.0%
TGACATGTACATGAAGGTTA+AGG + chr7_4:57516085-57516104 Msa1165580:CDS 35.0%
! TTGTAAAATGTTTAGGGTCC+TGG + chr7_4:57516388-57516407 Msa1165580:intron 35.0%
TTATAATACTCACTGGGTCT+GGG - chr7_4:57516470-57516489 None:intergenic 35.0%
ATTATAATACTCACTGGGTC+TGG - chr7_4:57516471-57516490 None:intergenic 35.0%
ACCGCAAAAGAAATCAAAGA+AGG + chr7_4:57516564-57516583 Msa1165580:CDS 35.0%
!! GCCTTCTTTGATTTCTTTTG+CGG - chr7_4:57516568-57516587 None:intergenic 35.0%
!! GTTTTGACGAGTCTTTTTGT+TGG + chr7_4:57516653-57516672 Msa1165580:three_prime_UTR 35.0%
! GCAAAACACCATTTAGAACA+GGG - chr7_4:57516731-57516750 None:intergenic 35.0%
! AGCAAAACACCATTTAGAAC+AGG - chr7_4:57516732-57516751 None:intergenic 35.0%
! ATTTTGTTGCGGAAACACTT+TGG + chr7_4:57516764-57516783 Msa1165580:three_prime_UTR 35.0%
TAGCTTACGAGAATTAGCCA+TGG - chr7_4:57515010-57515029 None:intergenic 40.0%
ATAAGGAAGCTGGTTAAGGA+TGG + chr7_4:57515120-57515139 Msa1165580:CDS 40.0%
TAAGGAAGCTGGTTAAGGAT+GGG + chr7_4:57515121-57515140 Msa1165580:CDS 40.0%
GTAGAATGAAGGAAGCTAAG+AGG + chr7_4:57515190-57515209 Msa1165580:CDS 40.0%
ATGAAGGAAGCTAAGAGGAA+AGG + chr7_4:57515195-57515214 Msa1165580:CDS 40.0%
AAAGGAAGACACTCTGGATA+TGG + chr7_4:57515213-57515232 Msa1165580:CDS 40.0%
ATGAAGCTAATCGAGGTTAG+GGG - chr7_4:57515252-57515271 None:intergenic 40.0%
ATATCTCTAGATGACCAGAC+AGG - chr7_4:57515898-57515917 None:intergenic 40.0%
AATGTGCATAGGTAAGAGGA+AGG + chr7_4:57515947-57515966 Msa1165580:intron 40.0%
ATGTGCATAGGTAAGAGGAA+GGG + chr7_4:57515948-57515967 Msa1165580:intron 40.0%
CATGTGCTTGTCAATCTTCT+TGG - chr7_4:57516060-57516079 None:intergenic 40.0%
GTACCATGACATGTACATGA+AGG + chr7_4:57516079-57516098 Msa1165580:CDS 40.0%
! TAAAATGTTTAGGGTCCTGG+AGG + chr7_4:57516391-57516410 Msa1165580:intron 40.0%
AAAAACATCAGCATAGCAGG+CGG - chr7_4:57516522-57516541 None:intergenic 40.0%
AGATTGCTTGGCTGAATTGT+TGG + chr7_4:57516600-57516619 Msa1165580:exon 40.0%
GATTGCTTGGCTGAATTGTT+GGG + chr7_4:57516601-57516620 Msa1165580:three_prime_UTR 40.0%
!! CTACTTTAGAACAGCAACTG+AGG - chr7_4:57516634-57516653 None:intergenic 40.0%
TAGCTTACGAGAATTAGCCA+TGG - chr7_4:57515010-57515029 None:intergenic 40.0%
ATAAGGAAGCTGGTTAAGGA+TGG + chr7_4:57515120-57515139 Msa1165580:CDS 40.0%
TAAGGAAGCTGGTTAAGGAT+GGG + chr7_4:57515121-57515140 Msa1165580:CDS 40.0%
GTAGAATGAAGGAAGCTAAG+AGG + chr7_4:57515190-57515209 Msa1165580:CDS 40.0%
ATGAAGGAAGCTAAGAGGAA+AGG + chr7_4:57515195-57515214 Msa1165580:CDS 40.0%
AAAGGAAGACACTCTGGATA+TGG + chr7_4:57515213-57515232 Msa1165580:CDS 40.0%
ATGAAGCTAATCGAGGTTAG+GGG - chr7_4:57515252-57515271 None:intergenic 40.0%
ATATCTCTAGATGACCAGAC+AGG - chr7_4:57515898-57515917 None:intergenic 40.0%
AATGTGCATAGGTAAGAGGA+AGG + chr7_4:57515947-57515966 Msa1165580:intron 40.0%
ATGTGCATAGGTAAGAGGAA+GGG + chr7_4:57515948-57515967 Msa1165580:intron 40.0%
CATGTGCTTGTCAATCTTCT+TGG - chr7_4:57516060-57516079 None:intergenic 40.0%
GTACCATGACATGTACATGA+AGG + chr7_4:57516079-57516098 Msa1165580:CDS 40.0%
! TAAAATGTTTAGGGTCCTGG+AGG + chr7_4:57516391-57516410 Msa1165580:intron 40.0%
AAAAACATCAGCATAGCAGG+CGG - chr7_4:57516522-57516541 None:intergenic 40.0%
AGATTGCTTGGCTGAATTGT+TGG + chr7_4:57516600-57516619 Msa1165580:exon 40.0%
GATTGCTTGGCTGAATTGTT+GGG + chr7_4:57516601-57516620 Msa1165580:three_prime_UTR 40.0%
!! CTACTTTAGAACAGCAACTG+AGG - chr7_4:57516634-57516653 None:intergenic 40.0%
TAGGCCAAACATAAGGAAGC+TGG + chr7_4:57515110-57515129 Msa1165580:intron 45.0%
AAGAGGAAAGGAAGACACTC+TGG + chr7_4:57515207-57515226 Msa1165580:CDS 45.0%
GAAGACACTCTGGATATGGT+TGG + chr7_4:57515217-57515236 Msa1165580:intron 45.0%
GGCTTCCCACAAAAATCCTT+TGG + chr7_4:57515985-57516004 Msa1165580:CDS 45.0%
CACGCATTCTTCTCATCCAA+AGG - chr7_4:57516004-57516023 None:intergenic 45.0%
TCACAAGTCCAAAGCTGAGA+AGG + chr7_4:57516147-57516166 Msa1165580:intron 45.0%
TAGGCCAAACATAAGGAAGC+TGG + chr7_4:57515110-57515129 Msa1165580:intron 45.0%
AAGAGGAAAGGAAGACACTC+TGG + chr7_4:57515207-57515226 Msa1165580:CDS 45.0%
GAAGACACTCTGGATATGGT+TGG + chr7_4:57515217-57515236 Msa1165580:intron 45.0%
GGCTTCCCACAAAAATCCTT+TGG + chr7_4:57515985-57516004 Msa1165580:CDS 45.0%
CACGCATTCTTCTCATCCAA+AGG - chr7_4:57516004-57516023 None:intergenic 45.0%
TCACAAGTCCAAAGCTGAGA+AGG + chr7_4:57516147-57516166 Msa1165580:intron 45.0%
!!! AAATAAATTTTATTTAAGAT+CGG - chr7_4:57515431-57515450 None:intergenic 5.0%
!!! AAATAAATTTTATTTAAGAT+CGG - chr7_4:57515431-57515450 None:intergenic 5.0%
!! CGAGGCGCTTTTGCAATTGA+GGG - chr7_4:57514921-57514940 None:intergenic 50.0%
AACCCACCAAGATTCACTCC+AGG + chr7_4:57515157-57515176 Msa1165580:CDS 50.0%
GACCTGGAGTGAATCTTGGT+GGG - chr7_4:57515162-57515181 None:intergenic 50.0%
AGACCTGGAGTGAATCTTGG+TGG - chr7_4:57515163-57515182 None:intergenic 50.0%
ACGAGACCTGGAGTGAATCT+TGG - chr7_4:57515166-57515185 None:intergenic 50.0%
GTCTCGTGCTCGTAGAATGA+AGG + chr7_4:57515179-57515198 Msa1165580:CDS 50.0%
GCTCAAAGCATGTTCCTGTC+TGG + chr7_4:57515881-57515900 Msa1165580:intron 50.0%
!! TAAGAGGAAGGGTACCAGAG+AGG + chr7_4:57515959-57515978 Msa1165580:CDS 50.0%
TGTCAATCTTCTTGGCCTCC+CGG - chr7_4:57516052-57516071 None:intergenic 50.0%
! CTCTCTAGCCTTCTCAGCTT+TGG - chr7_4:57516158-57516177 None:intergenic 50.0%
GACCTTGTCTGACCAGTTTG+AGG + chr7_4:57516180-57516199 Msa1165580:intron 50.0%
TCCTAGCATGCTTCCTCTCA+CGG - chr7_4:57516231-57516250 None:intergenic 50.0%
! TGAGAGGAAGCATGCTAGGA+GGG + chr7_4:57516231-57516250 Msa1165580:CDS 50.0%
!! GTTGGCTTTGTTGCAGCAAC+AGG - chr7_4:57516448-57516467 None:intergenic 50.0%
AATACTCACTGGGTCTGGGT+TGG - chr7_4:57516466-57516485 None:intergenic 50.0%
CAAGCAATCTCAGACTGCAG+CGG - chr7_4:57516590-57516609 None:intergenic 50.0%
!! CGAGGCGCTTTTGCAATTGA+GGG - chr7_4:57514921-57514940 None:intergenic 50.0%
AACCCACCAAGATTCACTCC+AGG + chr7_4:57515157-57515176 Msa1165580:CDS 50.0%
GACCTGGAGTGAATCTTGGT+GGG - chr7_4:57515162-57515181 None:intergenic 50.0%
AGACCTGGAGTGAATCTTGG+TGG - chr7_4:57515163-57515182 None:intergenic 50.0%
ACGAGACCTGGAGTGAATCT+TGG - chr7_4:57515166-57515185 None:intergenic 50.0%
GTCTCGTGCTCGTAGAATGA+AGG + chr7_4:57515179-57515198 Msa1165580:CDS 50.0%
GCTCAAAGCATGTTCCTGTC+TGG + chr7_4:57515881-57515900 Msa1165580:intron 50.0%
!! TAAGAGGAAGGGTACCAGAG+AGG + chr7_4:57515959-57515978 Msa1165580:CDS 50.0%
TGTCAATCTTCTTGGCCTCC+CGG - chr7_4:57516052-57516071 None:intergenic 50.0%
! CTCTCTAGCCTTCTCAGCTT+TGG - chr7_4:57516158-57516177 None:intergenic 50.0%
GACCTTGTCTGACCAGTTTG+AGG + chr7_4:57516180-57516199 Msa1165580:intron 50.0%
TCCTAGCATGCTTCCTCTCA+CGG - chr7_4:57516231-57516250 None:intergenic 50.0%
! TGAGAGGAAGCATGCTAGGA+GGG + chr7_4:57516231-57516250 Msa1165580:CDS 50.0%
!! GTTGGCTTTGTTGCAGCAAC+AGG - chr7_4:57516448-57516467 None:intergenic 50.0%
AATACTCACTGGGTCTGGGT+TGG - chr7_4:57516466-57516485 None:intergenic 50.0%
CAAGCAATCTCAGACTGCAG+CGG - chr7_4:57516590-57516609 None:intergenic 50.0%
!! GCGAGGCGCTTTTGCAATTG+AGG - chr7_4:57514922-57514941 None:intergenic 55.0%
ACTTGAGAACGCTGGAAGCG+AGG - chr7_4:57514939-57514958 None:intergenic 55.0%
GCTTCCAGCGTTCTCAAGTG+CGG + chr7_4:57514940-57514959 Msa1165580:CDS 55.0%
AGTGCGGTCGTGGCAAAGTT+TGG + chr7_4:57514956-57514975 Msa1165580:intron 55.0%
CATTCTACGAGCACGAGACC+TGG - chr7_4:57515178-57515197 None:intergenic 55.0%
GACGTTTGCTCCGCAAGTAC+CGG + chr7_4:57516030-57516049 Msa1165580:CDS 55.0%
ACGTTTGCTCCGCAAGTACC+GGG + chr7_4:57516031-57516050 Msa1165580:CDS 55.0%
GGCCTCAAACTGGTCAGACA+AGG - chr7_4:57516185-57516204 None:intergenic 55.0%
TGGCACGTTTGGCCTCAAAC+TGG - chr7_4:57516195-57516214 None:intergenic 55.0%
GGCCAAACGTGCCAAGAACA+AGG + chr7_4:57516201-57516220 Msa1165580:CDS 55.0%
!! GGCCTTGTTCTTGGCACGTT+TGG - chr7_4:57516206-57516225 None:intergenic 55.0%
! GTGAGAGGAAGCATGCTAGG+AGG + chr7_4:57516230-57516249 Msa1165580:CDS 55.0%
ACATCAGCATAGCAGGCGGA+AGG - chr7_4:57516518-57516537 None:intergenic 55.0%
! CGCTGCAGTCTGAGATTGCT+TGG + chr7_4:57516588-57516607 Msa1165580:exon 55.0%
!! GCGAGGCGCTTTTGCAATTG+AGG - chr7_4:57514922-57514941 None:intergenic 55.0%
ACTTGAGAACGCTGGAAGCG+AGG - chr7_4:57514939-57514958 None:intergenic 55.0%
GCTTCCAGCGTTCTCAAGTG+CGG + chr7_4:57514940-57514959 Msa1165580:CDS 55.0%
AGTGCGGTCGTGGCAAAGTT+TGG + chr7_4:57514956-57514975 Msa1165580:intron 55.0%
CATTCTACGAGCACGAGACC+TGG - chr7_4:57515178-57515197 None:intergenic 55.0%
GACGTTTGCTCCGCAAGTAC+CGG + chr7_4:57516030-57516049 Msa1165580:CDS 55.0%
ACGTTTGCTCCGCAAGTACC+GGG + chr7_4:57516031-57516050 Msa1165580:CDS 55.0%
GGCCTCAAACTGGTCAGACA+AGG - chr7_4:57516185-57516204 None:intergenic 55.0%
TGGCACGTTTGGCCTCAAAC+TGG - chr7_4:57516195-57516214 None:intergenic 55.0%
GGCCAAACGTGCCAAGAACA+AGG + chr7_4:57516201-57516220 Msa1165580:CDS 55.0%
!! GGCCTTGTTCTTGGCACGTT+TGG - chr7_4:57516206-57516225 None:intergenic 55.0%
! GTGAGAGGAAGCATGCTAGG+AGG + chr7_4:57516230-57516249 Msa1165580:CDS 55.0%
ACATCAGCATAGCAGGCGGA+AGG - chr7_4:57516518-57516537 None:intergenic 55.0%
! CGCTGCAGTCTGAGATTGCT+TGG + chr7_4:57516588-57516607 Msa1165580:exon 55.0%
ACGACCGCACTTGAGAACGC+TGG - chr7_4:57514947-57514966 None:intergenic 60.0%
AGCGTTCTCAAGTGCGGTCG+TGG + chr7_4:57514946-57514965 Msa1165580:CDS 60.0%
!! GGAAGGGTACCAGAGAGGCA+AGG + chr7_4:57515964-57515983 Msa1165580:CDS 60.0%
TGTGGGAAGCCTTGCCTCTC+TGG - chr7_4:57515976-57515995 None:intergenic 60.0%
!! TTTGCTCCGCAAGTACCGGG+AGG + chr7_4:57516034-57516053 Msa1165580:CDS 60.0%
TCTTGGCCTCCCGGTACTTG+CGG - chr7_4:57516043-57516062 None:intergenic 60.0%
!! CTCACGGCTGGCCTTGTTCT+TGG - chr7_4:57516215-57516234 None:intergenic 60.0%
AGAACAAGGCCAGCCGTGAG+AGG + chr7_4:57516215-57516234 Msa1165580:CDS 60.0%
AGCATGCTTCCTCTCACGGC+TGG - chr7_4:57516227-57516246 None:intergenic 60.0%
! GCCGTGAGAGGAAGCATGCT+AGG + chr7_4:57516227-57516246 Msa1165580:CDS 60.0%
! GAGGAAGCATGCTAGGAGGG+AGG + chr7_4:57516234-57516253 Msa1165580:CDS 60.0%
!! TCTGCTGGCTTCTCTCCTCC+AGG - chr7_4:57516409-57516428 None:intergenic 60.0%
GCAGCACTAGGAGCTTCTGC+TGG - chr7_4:57516424-57516443 None:intergenic 60.0%
GCAGCAACAGGTGCAGCACT+AGG - chr7_4:57516436-57516455 None:intergenic 60.0%
ACGACCGCACTTGAGAACGC+TGG - chr7_4:57514947-57514966 None:intergenic 60.0%
AGCGTTCTCAAGTGCGGTCG+TGG + chr7_4:57514946-57514965 Msa1165580:CDS 60.0%
!! GGAAGGGTACCAGAGAGGCA+AGG + chr7_4:57515964-57515983 Msa1165580:CDS 60.0%
TGTGGGAAGCCTTGCCTCTC+TGG - chr7_4:57515976-57515995 None:intergenic 60.0%
!! TTTGCTCCGCAAGTACCGGG+AGG + chr7_4:57516034-57516053 Msa1165580:CDS 60.0%
TCTTGGCCTCCCGGTACTTG+CGG - chr7_4:57516043-57516062 None:intergenic 60.0%
!! CTCACGGCTGGCCTTGTTCT+TGG - chr7_4:57516215-57516234 None:intergenic 60.0%
AGAACAAGGCCAGCCGTGAG+AGG + chr7_4:57516215-57516234 Msa1165580:CDS 60.0%
AGCATGCTTCCTCTCACGGC+TGG - chr7_4:57516227-57516246 None:intergenic 60.0%
! GCCGTGAGAGGAAGCATGCT+AGG + chr7_4:57516227-57516246 Msa1165580:CDS 60.0%
! GAGGAAGCATGCTAGGAGGG+AGG + chr7_4:57516234-57516253 Msa1165580:CDS 60.0%
!! TCTGCTGGCTTCTCTCCTCC+AGG - chr7_4:57516409-57516428 None:intergenic 60.0%
GCAGCACTAGGAGCTTCTGC+TGG - chr7_4:57516424-57516443 None:intergenic 60.0%
GCAGCAACAGGTGCAGCACT+AGG - chr7_4:57516436-57516455 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 57514911 57516846 57514911 ID=Msa1165580;Name=Msa1165580
chr7_4 mRNA 57514911 57516846 57514911 ID=Msa1165580-mRNA-1;Parent=Msa1165580;Name=Msa1165580-mRNA-1;_AED=0.20;_eAED=0.26;_QI=0|0.6|0.5|1|1|1|6|246|172
chr7_4 exon 57514911 57514972 57514911 ID=Msa1165580-mRNA-1:exon:17428;Parent=Msa1165580-mRNA-1
chr7_4 exon 57515113 57515234 57515113 ID=Msa1165580-mRNA-1:exon:17429;Parent=Msa1165580-mRNA-1
chr7_4 exon 57515958 57516106 57515958 ID=Msa1165580-mRNA-1:exon:17430;Parent=Msa1165580-mRNA-1
chr7_4 exon 57516196 57516270 57516196 ID=Msa1165580-mRNA-1:exon:17431;Parent=Msa1165580-mRNA-1
chr7_4 exon 57516403 57516476 57516403 ID=Msa1165580-mRNA-1:exon:17432;Parent=Msa1165580-mRNA-1
chr7_4 exon 57516564 57516846 57516564 ID=Msa1165580-mRNA-1:exon:17433;Parent=Msa1165580-mRNA-1
chr7_4 CDS 57514911 57514972 57514911 ID=Msa1165580-mRNA-1:cds;Parent=Msa1165580-mRNA-1
chr7_4 CDS 57515113 57515234 57515113 ID=Msa1165580-mRNA-1:cds;Parent=Msa1165580-mRNA-1
chr7_4 CDS 57515958 57516106 57515958 ID=Msa1165580-mRNA-1:cds;Parent=Msa1165580-mRNA-1
chr7_4 CDS 57516196 57516270 57516196 ID=Msa1165580-mRNA-1:cds;Parent=Msa1165580-mRNA-1
chr7_4 CDS 57516403 57516476 57516403 ID=Msa1165580-mRNA-1:cds;Parent=Msa1165580-mRNA-1
chr7_4 CDS 57516564 57516600 57516564 ID=Msa1165580-mRNA-1:cds;Parent=Msa1165580-mRNA-1
chr7_4 three_prime_UTR 57516601 57516846 57516601 ID=Msa1165580-mRNA-1:three_prime_utr;Parent=Msa1165580-mRNA-1
Gene Sequence

>Msa1165580

ATGGTCTCCCTCAATTGCAAAAGCGCCTCGCTTCCAGCGTTCTCAAGTGCGGTCGTGGCAAAGCCAAACATAAGGAAGCTGGTTAAGGATGGGTTTATAATCAGGAAACCCACCAAGATTCACTCCAGGTCTCGTGCTCGTAGAATGAAGGAAGCTAAGAGGAAAGGAAGACACTCTGGATATGGTAAGAGGAAGGGTACCAGAGAGGCAAGGCTTCCCACAAAAATCCTTTGGATGAGAAGAATGCGTGTTCTCAGACGTTTGCTCCGCAAGTACCGGGAGGCCAAGAAGATTGACAAGCACATGTACCATGACATGTACATGAAGGTTAAGTTTGAGGCCAAACGTGCCAAGAACAAGGCCAGCCGTGAGAGGAAGCATGCTAGGAGGGAGGAGCGTTTCGCTCAAGGTCCTGGAGGAGAGAAGCCAGCAGAAGCTCCTAGTGCTGCACCTGTTGCTGCAACAAAGCCAACCCAGACCCAACCGCAAAAGAAATCAAAGAAGGCCGCTGCAGTCTGA

Protein sequence

>Msa1165580

MVSLNCKSASLPAFSSAVVAKPNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYREAKKIDKHMYHDMYMKVKFEAKRAKNKASRERKHARREERFAQGPGGEKPAEAPSAAPVAATKPTQTQPQKKSKKAAAV*