AlfalfaGEDB | Msa1165580

M. sativa cultivar zhongmu-4 / Msa1165580

KEGG: K02885
GO: GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0070013 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904
PFAM: PF01280.23

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1165580	XP_013450385.1	80.749	187	6	1	16	172	33	219	1.83e-95	286

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1165580	sp\|Q9LUQ6\|RL192_ARATH	65.027	183	28	4	16	168	33	209	2.29e-68	209

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1165580	I3SA92	80.749	187	6	1	16	172	33	219	8.74e-96	286

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0032780	Msa1165580	0.820957	5.212291e-53	-8.615850e-47
Msa0114600	Msa1165580	0.828161	1.048516e-54	-8.615850e-47
Msa0140850	Msa1165580	0.843051	1.776707e-58	-8.615850e-47
Msa0250820	Msa1165580	0.864465	1.192481e-64	-8.615850e-47
Msa0250870	Msa1165580	0.822517	2.270362e-53	-8.615850e-47
Msa0336010	Msa1165580	0.819551	1.094301e-52	-8.615850e-47
Msa0425410	Msa1165580	0.835409	1.706429e-56	-8.615850e-47
Msa0436720	Msa1165580	0.834877	2.324988e-56	-8.615850e-47
Msa0685460	Msa1165580	0.847842	8.950086e-60	-8.615850e-47
Msa0685470	Msa1165580	0.839193	1.834857e-57	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1165580	MtrunA17_Chr7g0269621	80.749	187	6	1	16	172	33	219	1.68e-99	286
Msa1165580	MtrunA17_Chr1g0195141	76.623	154	6	1	16	139	33	186	5.34e-64	196

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1165580	AT3G16780.1	65.027	183	28	4	16	168	33	209	2.33e-69	209
Msa1165580	AT1G02780.1	70.513	156	16	1	16	141	33	188	6.30e-60	186
Msa1165580	AT4G02230.1	69.872	156	17	1	16	141	33	188	9.13e-60	185
Msa1165580	AT4G16030.1	42.063	126	37	7	40	147	6	113	3.45e-11	57.8

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Find 65 sgRNAs with CRISPR-Local

Find 242 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACATAAGGAAGCTGGTTA+AGG	0.436979	7_4:+57515116	Msa1165580:CDS
AAAGGAAGACACTCTGGATA+TGG	0.389292	7_4:+57515213	Msa1165580:CDS
AACCCACCAAGATTCACTCC+AGG	0.614800	7_4:+57515157	Msa1165580:CDS
AAGAGGAAAGGAAGACACTC+TGG	0.516416	7_4:+57515207	Msa1165580:CDS
AATACTCACTGGGTCTGGGT+TGG	0.502471	7_4:-57516463	None:intergenic
AATGTGCATAGGTAAGAGGA+AGG	0.560538	7_4:+57515947	Msa1165580:intron
ACCGCAAAAGAAATCAAAGA+AGG	0.568261	7_4:+57516564	Msa1165580:CDS
ACGACCGCACTTGAGAACGC+TGG	0.620586	7_4:-57514944	None:intergenic
ACGAGACCTGGAGTGAATCT+TGG	0.472398	7_4:-57515163	None:intergenic
ACGTTTGCTCCGCAAGTACC+GGG	0.538079	7_4:+57516031	Msa1165580:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAGATTTCGTTAACTTCATT+TGG	-	chr7_4:57514988-57515007	None:intergenic	30.0%
AAAAACTGTCAACAATTCCA+AGG	-	chr7_4:57515750-57515769	None:intergenic	30.0%
TTAAAAAACATCAGCATAGC+AGG	-	chr7_4:57516525-57516544	None:intergenic	30.0%
GAGATTTCGTTAACTTCATT+TGG	-	chr7_4:57514988-57515007	None:intergenic	30.0%
AAAAACTGTCAACAATTCCA+AGG	-	chr7_4:57515750-57515769	None:intergenic	30.0%
TTAAAAAACATCAGCATAGC+AGG	-	chr7_4:57516525-57516544	None:intergenic	30.0%
TGAAGTTAACGAAATCTCCA+TGG	+	chr7_4:57514990-57515009	Msa1165580:intron	35.0%
TTAACCAGCTTCCTTATGTT+TGG	-	chr7_4:57515117-57515136	None:intergenic	35.0%
AAACATAAGGAAGCTGGTTA+AGG	+	chr7_4:57515116-57515135	Msa1165580:CDS	35.0%
AATGAAGCTAATCGAGGTTA+GGG	-	chr7_4:57515253-57515272	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_4	gene	57514911	57516846	57514911	ID=Msa1165580;Name=Msa1165580
chr7_4	mRNA	57514911	57516846	57514911	ID=Msa1165580-mRNA-1;Parent=Msa1165580;Name=Msa1165580-mRNA-1;_AED=0.20;_eAED=0.26;_QI=0\|0.6\|0.5\|1\|1\|1\|6\|246\|172
chr7_4	exon	57514911	57514972	57514911	ID=Msa1165580-mRNA-1:exon:17428;Parent=Msa1165580-mRNA-1
chr7_4	exon	57515113	57515234	57515113	ID=Msa1165580-mRNA-1:exon:17429;Parent=Msa1165580-mRNA-1
chr7_4	exon	57515958	57516106	57515958	ID=Msa1165580-mRNA-1:exon:17430;Parent=Msa1165580-mRNA-1
chr7_4	exon	57516196	57516270	57516196	ID=Msa1165580-mRNA-1:exon:17431;Parent=Msa1165580-mRNA-1
chr7_4	exon	57516403	57516476	57516403	ID=Msa1165580-mRNA-1:exon:17432;Parent=Msa1165580-mRNA-1
chr7_4	exon	57516564	57516846	57516564	ID=Msa1165580-mRNA-1:exon:17433;Parent=Msa1165580-mRNA-1
chr7_4	CDS	57514911	57514972	57514911	ID=Msa1165580-mRNA-1:cds;Parent=Msa1165580-mRNA-1
chr7_4	CDS	57515113	57515234	57515113	ID=Msa1165580-mRNA-1:cds;Parent=Msa1165580-mRNA-1
chr7_4	CDS	57515958	57516106	57515958	ID=Msa1165580-mRNA-1:cds;Parent=Msa1165580-mRNA-1
chr7_4	CDS	57516196	57516270	57516196	ID=Msa1165580-mRNA-1:cds;Parent=Msa1165580-mRNA-1
chr7_4	CDS	57516403	57516476	57516403	ID=Msa1165580-mRNA-1:cds;Parent=Msa1165580-mRNA-1
chr7_4	CDS	57516564	57516600	57516564	ID=Msa1165580-mRNA-1:cds;Parent=Msa1165580-mRNA-1
chr7_4	three_prime_UTR	57516601	57516846	57516601	ID=Msa1165580-mRNA-1:three_prime_utr;Parent=Msa1165580-mRNA-1

Gene Sequence

>Msa1165580

ATGGTCTCCCTCAATTGCAAAAGCGCCTCGCTTCCAGCGTTCTCAAGTGCGGTCGTGGCAAAGCCAAACATAAGGAAGCTGGTTAAGGATGGGTTTATAATCAGGAAACCCACCAAGATTCACTCCAGGTCTCGTGCTCGTAGAATGAAGGAAGCTAAGAGGAAAGGAAGACACTCTGGATATGGTAAGAGGAAGGGTACCAGAGAGGCAAGGCTTCCCACAAAAATCCTTTGGATGAGAAGAATGCGTGTTCTCAGACGTTTGCTCCGCAAGTACCGGGAGGCCAAGAAGATTGACAAGCACATGTACCATGACATGTACATGAAGGTTAAGTTTGAGGCCAAACGTGCCAAGAACAAGGCCAGCCGTGAGAGGAAGCATGCTAGGAGGGAGGAGCGTTTCGCTCAAGGTCCTGGAGGAGAGAAGCCAGCAGAAGCTCCTAGTGCTGCACCTGTTGCTGCAACAAAGCCAACCCAGACCCAACCGCAAAAGAAATCAAAGAAGGCCGCTGCAGTCTGA

Protein sequence

>Msa1165580

MVSLNCKSASLPAFSSAVVAKPNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYREAKKIDKHMYHDMYMKVKFEAKRAKNKASRERKHARREERFAQGPGGEKPAEAPSAAPVAATKPTQTQPQKKSKKAAAV*