AlfalfaGEDB | Msa1362210

M. sativa cultivar zhongmu-4 / Msa1362210

KEGG: K02885
GO: GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0070013 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904
PFAM: PF01280.23

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1362210	XP_013450385.1	100.000	141	0	0	4	144	79	219	9.92e-95	283

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1362210	sp\|Q9LUQ6\|RL192_ARATH	80.292	137	21	3	4	140	79	209	4.97e-68	207

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1362210	I3SA92	100.000	141	0	0	4	144	79	219	4.74e-95	283

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0032780	Msa1362210	0.892801	1.134898e-74	-8.615850e-47
Msa0056430	Msa1362210	0.804132	2.501839e-49	-8.615850e-47
Msa0085780	Msa1362210	0.805457	1.322868e-49	-8.615850e-47
Msa0091750	Msa1362210	0.815030	1.139144e-51	-8.615850e-47
Msa0114600	Msa1362210	0.849960	2.312171e-60	-8.615850e-47
Msa1362210	Msa1364480	0.821113	4.798048e-53	-8.615850e-47
Msa1362210	Msa1365140	0.810952	8.925111e-51	-8.615850e-47
Msa1362210	Msa1368920	0.810181	1.309646e-50	-8.615850e-47
Msa1362210	Msa1393000	0.816190	6.284003e-52	-8.615850e-47
Msa1362210	Msa1418770	0.822413	2.400957e-53	-8.615850e-47
Msa1362210	Msa1426120	0.808471	3.047853e-50	-8.615850e-47
Msa1362210	Msa1446410	0.853960	1.691582e-61	-8.615850e-47
Msa0622230	Msa1362210	0.874660	5.676663e-68	-8.615850e-47
Msa0643980	Msa1362210	0.823515	1.328977e-53	-8.615850e-47
Msa0685460	Msa1362210	0.813914	2.010915e-51	-8.615850e-47
Msa0685470	Msa1362210	0.800278	1.553598e-48	-8.615850e-47
Msa0698780	Msa1362210	0.830583	2.706541e-55	-8.615850e-47
Msa0711000	Msa1362210	0.823847	1.110877e-53	-8.615850e-47
Msa0745970	Msa1362210	0.861325	1.110670e-63	-8.615850e-47
Msa0748350	Msa1362210	0.854157	1.483450e-61	-8.615850e-47
Msa0140850	Msa1362210	0.882125	1.354120e-70	-8.615850e-47
Msa0149200	Msa1362210	0.800540	1.373984e-48	-8.615850e-47
Msa0172900	Msa1362210	0.838504	2.765755e-57	-8.615850e-47
Msa0183090	Msa1362210	0.831879	1.299452e-55	-8.615850e-47
Msa0194940	Msa1362210	0.819094	1.390927e-52	-8.615850e-47
Msa0210330	Msa1362210	0.814094	1.835493e-51	-8.615850e-47
Msa0222730	Msa1362210	0.802585	5.231596e-49	-8.615850e-47
Msa0229150	Msa1362210	0.859115	5.171375e-63	-8.615850e-47
Msa0230490	Msa1362210	0.823103	1.658521e-53	-8.615850e-47
Msa0235050	Msa1362210	0.803215	3.877328e-49	-8.615850e-47
Msa1256840	Msa1362210	0.827075	1.910918e-54	-8.615850e-47
Msa1269790	Msa1362210	0.828093	1.088825e-54	-8.615850e-47
Msa1295150	Msa1362210	0.840476	8.498859e-58	-8.615850e-47
Msa1295170	Msa1362210	0.833990	3.882467e-56	-8.615850e-47
Msa1311400	Msa1362210	0.835531	1.589282e-56	-8.615850e-47
Msa1321790	Msa1362210	0.807023	6.187333e-50	-8.615850e-47
Msa1332250	Msa1362210	0.805535	1.273914e-49	-8.615850e-47
Msa1338190	Msa1362210	0.839978	1.146237e-57	-8.615850e-47
Msa0419710	Msa1362210	0.809435	1.894648e-50	-8.615850e-47
Msa0425410	Msa1362210	0.849405	3.301797e-60	-8.615850e-47
Msa0425640	Msa1362210	0.814869	1.236912e-51	-8.615850e-47
Msa0436720	Msa1362210	0.848843	4.734040e-60	-8.615850e-47
Msa0481850	Msa1362210	0.826167	3.146861e-54	-8.615850e-47
Msa1010310	Msa1362210	0.811488	6.827109e-51	-8.615850e-47
Msa1021470	Msa1362210	0.807050	6.107350e-50	-8.615850e-47
Msa1037290	Msa1362210	0.811744	6.006883e-51	-8.615850e-47
Msa1078870	Msa1362210	0.816605	5.072543e-52	-8.615850e-47
Msa1080350	Msa1362210	0.824963	6.070009e-54	-8.615850e-47
Msa1083360	Msa1362210	-0.805649	1.205287e-49	-8.615850e-47
Msa1085420	Msa1362210	0.825267	5.146013e-54	-8.615850e-47
Msa0250820	Msa1362210	0.864388	1.260806e-64	-8.615850e-47
Msa0250870	Msa1362210	0.808885	2.485766e-50	-8.615850e-47
Msa0264010	Msa1362210	0.811495	6.805636e-51	-8.615850e-47
Msa0336010	Msa1362210	0.812129	4.951037e-51	-8.615850e-47
Msa1125860	Msa1362210	0.831232	1.876354e-55	-8.615850e-47
Msa1126060	Msa1362210	0.832439	9.445736e-56	-8.615850e-47
Msa1163530	Msa1362210	0.836410	9.510210e-57	-8.615850e-47
Msa1164150	Msa1362210	0.830301	3.172522e-55	-8.615850e-47
Msa1165580	Msa1362210	0.946569	3.595150e-105	-8.615850e-47
Msa1165640	Msa1362210	0.875494	2.948564e-68	-8.615850e-47
Msa1169180	Msa1362210	0.804361	2.241473e-49	-8.615850e-47
Msa0516810	Msa1362210	0.824403	8.227205e-54	-8.615850e-47
Msa0524110	Msa1362210	0.810566	1.081382e-50	-8.615850e-47
Msa0529900	Msa1362210	0.826776	2.253680e-54	-8.615850e-47
Msa0573350	Msa1362210	0.806589	7.644143e-50	-8.615850e-47
Msa0580980	Msa1362210	0.800652	1.303547e-48	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1362210	MtrunA17_Chr7g0269621	100.000	141	0	0	4	144	79	219	9.12e-99	283
Msa1362210	MtrunA17_Chr1g0195141	100.000	108	0	0	4	111	79	186	7.41e-63	191

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1362210	AT3G16780.1	80.292	137	21	3	4	140	79	209	5.06e-69	207
Msa1362210	AT4G02230.1	93.636	110	7	0	4	113	79	188	1.42e-61	188
Msa1362210	AT1G02780.1	93.636	110	7	0	4	113	79	188	1.79e-61	188
Msa1362210	AT4G16030.1	49.398	83	18	2	38	119	54	113	8.55e-14	63.9

Find 53 sgRNAs with CRISPR-Local

Find 143 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CTCACGGCTGGCCTTGTTCT+TGG	0.184984	tig0017690:+334860	None:intergenic
ATAATAGTCCCTGTTCTAAA+TGG	0.256274	tig0017690:-334352	Msa1362210:three_prime_UTR
CTCTCTAGCCTTCTCAGCTT+TGG	0.269286	tig0017690:+334917	None:intergenic
CATGTGCTTGTCAATCTTCT+TGG	0.273354	tig0017690:+335016	None:intergenic
GGCCTTGTTCTTGGCACGTT+TGG	0.315875	tig0017690:+334869	None:intergenic
ATTATAATACTCACTGGGTC+TGG	0.332335	tig0017690:+334604	None:intergenic
TGTGGGAAGCCTTGCCTCTC+TGG	0.339458	tig0017690:+335100	None:intergenic
AGATTGCTTGGCTGAATTGT+TGG	0.341299	tig0017690:-334472	Msa1362210:three_prime_UTR
GATTGCTTGGCTGAATTGTT+GGG	0.356970	tig0017690:-334471	Msa1362210:three_prime_UTR
TTGTAAAATGTTTAGGGTCC+TGG	0.366808	tig0017690:-334684	Msa1362210:intron
CGCTGCAGTCTGAGATTGCT+TGG	0.398433	tig0017690:-334484	Msa1362210:exon
GTTGGCTTTGTTGCAGCAAC+AGG	0.405850	tig0017690:+334627	None:intergenic
AGCAAAACACCATTTAGAAC+AGG	0.406056	tig0017690:+334343	None:intergenic
TGACATGTACATGAAGGTTA+AGG	0.407532	tig0017690:-334988	Msa1362210:CDS
TTTGAATGTGCATAGGTAAG+AGG	0.427942	tig0017690:-335130	None:intergenic
TGTCAATCTTCTTGGCCTCC+CGG	0.437210	tig0017690:+335024	None:intergenic
GACGTTTGCTCCGCAAGTAC+CGG	0.438844	tig0017690:-335043	Msa1362210:CDS
GACCTTGTCTGACCAGTTTG+AGG	0.454488	tig0017690:-334892	Msa1362210:CDS
TCTGCTGGCTTCTCTCCTCC+AGG	0.456457	tig0017690:+334666	None:intergenic
TAAGAATAAGAGAGTTCTGA+TGG	0.474240	tig0017690:-334955	Msa1362210:CDS
TGGCACGTTTGGCCTCAAAC+TGG	0.475046	tig0017690:+334880	None:intergenic
AGCATGCTTCCTCTCACGGC+TGG	0.480022	tig0017690:+334848	None:intergenic
TTATAATACTCACTGGGTCT+GGG	0.483209	tig0017690:+334605	None:intergenic
AATAAATCGAGTTGGGGCTA+TGG	0.487660	tig0017690:+334228	None:intergenic
GACATGTACATGAAGGTTAA+GGG	0.489265	tig0017690:-334987	Msa1362210:CDS
TCCTAGCATGCTTCCTCTCA+CGG	0.495294	tig0017690:+334844	None:intergenic
AATACTCACTGGGTCTGGGT+TGG	0.502471	tig0017690:+334609	None:intergenic
TCTTGGCCTCCCGGTACTTG+CGG	0.524961	tig0017690:+335033	None:intergenic
GCAGCACTAGGAGCTTCTGC+TGG	0.526670	tig0017690:+334651	None:intergenic
ACGTTTGCTCCGCAAGTACC+GGG	0.538079	tig0017690:-335042	Msa1362210:CDS
CACGCATTCTTCTCATCCAA+AGG	0.547413	tig0017690:+335072	None:intergenic
GCCGTGAGAGGAAGCATGCT+AGG	0.550143	tig0017690:-334845	Msa1362210:CDS
TCACAAGTCCAAAGCTGAGA+AGG	0.552682	tig0017690:-334925	Msa1362210:CDS
AATGTGCATAGGTAAGAGGA+AGG	0.560538	tig0017690:-335126	Msa1362210:CDS
GTGTTTGTTTGAATGTGCAT+AGG	0.563217	tig0017690:-335137	None:intergenic
GCAGCAACAGGTGCAGCACT+AGG	0.565218	tig0017690:+334639	None:intergenic
ACCGCAAAAGAAATCAAAGA+AGG	0.568261	tig0017690:-334508	Msa1362210:CDS
TGAGAGGAAGCATGCTAGGA+GGG	0.573502	tig0017690:-334841	Msa1362210:CDS
AGAACAAGGCCAGCCGTGAG+AGG	0.576244	tig0017690:-334857	Msa1362210:CDS
GGCCAAACGTGCCAAGAACA+AGG	0.590924	tig0017690:-334871	Msa1362210:CDS
GGCCTCAAACTGGTCAGACA+AGG	0.594906	tig0017690:+334890	None:intergenic
TAACCTTCATGTACATGTCA+TGG	0.601477	tig0017690:+334991	None:intergenic
CTACTTTAGAACAGCAACTG+AGG	0.612176	tig0017690:+334441	None:intergenic
GTGAGAGGAAGCATGCTAGG+AGG	0.624464	tig0017690:-334842	Msa1362210:CDS
TAAAATGTTTAGGGTCCTGG+AGG	0.638656	tig0017690:-334681	Msa1362210:intron
CAAGCAATCTCAGACTGCAG+CGG	0.641887	tig0017690:+334485	None:intergenic
GTACCATGACATGTACATGA+AGG	0.655137	tig0017690:-334994	Msa1362210:CDS
GAGGAAGCATGCTAGGAGGG+AGG	0.658603	tig0017690:-334838	Msa1362210:CDS
GGAAGGGTACCAGAGAGGCA+AGG	0.658732	tig0017690:-335109	Msa1362210:CDS
TAAGAGGAAGGGTACCAGAG+AGG	0.678708	tig0017690:-335114	Msa1362210:CDS
GCAAAACACCATTTAGAACA+GGG	0.681819	tig0017690:+334344	None:intergenic
ATGTGCATAGGTAAGAGGAA+GGG	0.705490	tig0017690:-335125	Msa1362210:CDS
TTTGCTCCGCAAGTACCGGG+AGG	0.725507	tig0017690:-335039	Msa1362210:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	ATTCTTTTTGAAATTATTAA+TGG	-	tig0017690:334643-334662	Msa1362210:CDS	10.0%
!!!	ATTCTTTTTGAAATTATTAA+TGG	-	tig0017690:334643-334662	Msa1362210:CDS	10.0%
!!!	TTTTCTTTGTAAAATGTTTA+GGG	-	tig0017690:334676-334695	Msa1362210:intron	15.0%
!!	AATAAATTATAATACTCACT+GGG	+	tig0017690:334770-334789	None:intergenic	15.0%
!!!	ATGTTTTTATACTTTTCTAA+TGG	-	tig0017690:335097-335116	Msa1362210:CDS	15.0%
!!!	TTTTCTTTGTAAAATGTTTA+GGG	-	tig0017690:334676-334695	Msa1362210:intron	15.0%
!!	AATAAATTATAATACTCACT+GGG	+	tig0017690:334770-334789	None:intergenic	15.0%
!!!	ATGTTTTTATACTTTTCTAA+TGG	-	tig0017690:335097-335116	Msa1362210:CDS	15.0%
!!	AAAGAATTTCAAGAAATCAT+AGG	+	tig0017690:334577-334596	None:intergenic	20.0%
!!!	CTAAACATTTTACAAAGAAA+AGG	+	tig0017690:334677-334696	None:intergenic	20.0%
!!!	CTTTTCTTTGTAAAATGTTT+AGG	-	tig0017690:334675-334694	Msa1362210:intron	20.0%
!!	GAATAAATTATAATACTCAC+TGG	+	tig0017690:334771-334790	None:intergenic	20.0%
!!!	TGTTTAATTTTTCAGTTATC+AGG	-	tig0017690:334980-334999	Msa1362210:CDS	20.0%
!!!	TTTTTGTTATGATTTTGTTG+CGG	-	tig0017690:335047-335066	Msa1362210:CDS	20.0%
!!	AAAGAATTTCAAGAAATCAT+AGG	+	tig0017690:334577-334596	None:intergenic	20.0%
!!!	CTAAACATTTTACAAAGAAA+AGG	+	tig0017690:334677-334696	None:intergenic	20.0%
!!!	CTTTTCTTTGTAAAATGTTT+AGG	-	tig0017690:334675-334694	Msa1362210:intron	20.0%
!!	GAATAAATTATAATACTCAC+TGG	+	tig0017690:334771-334790	None:intergenic	20.0%
!!!	TGTTTAATTTTTCAGTTATC+AGG	-	tig0017690:334980-334999	Msa1362210:CDS	20.0%
!!!	TTTTTGTTATGATTTTGTTG+CGG	-	tig0017690:335047-335066	Msa1362210:CDS	20.0%
!	ACATAGATGTATATGATTTG+AGG	-	tig0017690:334601-334620	Msa1362210:intron	25.0%
!	ACATAGATGTATATGATTTG+AGG	-	tig0017690:334601-334620	Msa1362210:intron	25.0%
!	TAAGAATAAGAGAGTTCTGA+TGG	-	tig0017690:334411-334430	Msa1362210:three_prime_UTR	30.0%
	TTAAACAATCATGCATAGCA+GGG	+	tig0017690:334819-334838	None:intergenic	30.0%
	TTTAAACAATCATGCATAGC+AGG	+	tig0017690:334820-334839	None:intergenic	30.0%
!	ATAATAGTCCCTGTTCTAAA+TGG	-	tig0017690:335014-335033	Msa1362210:CDS	30.0%
!	TAAGAATAAGAGAGTTCTGA+TGG	-	tig0017690:334411-334430	Msa1362210:three_prime_UTR	30.0%
	TTAAACAATCATGCATAGCA+GGG	+	tig0017690:334819-334838	None:intergenic	30.0%
	TTTAAACAATCATGCATAGC+AGG	+	tig0017690:334820-334839	None:intergenic	30.0%
!	ATAATAGTCCCTGTTCTAAA+TGG	-	tig0017690:335014-335033	Msa1362210:CDS	30.0%
!	CTCATCCAAAGGATTTTTGT+GGG	+	tig0017690:334286-334305	None:intergenic	35.0%
!	TCTCATCCAAAGGATTTTTG+TGG	+	tig0017690:334287-334306	None:intergenic	35.0%
	TAACCTTCATGTACATGTCA+TGG	+	tig0017690:334378-334397	None:intergenic	35.0%
	TGACATGTACATGAAGGTTA+AGG	-	tig0017690:334378-334397	Msa1362210:three_prime_UTR	35.0%
	GACATGTACATGAAGGTTAA+GGG	-	tig0017690:334379-334398	Msa1362210:three_prime_UTR	35.0%
!	TTGTAAAATGTTTAGGGTCC+TGG	-	tig0017690:334682-334701	Msa1362210:intron	35.0%
	TTATAATACTCACTGGGTCT+GGG	+	tig0017690:334764-334783	None:intergenic	35.0%
	ATTATAATACTCACTGGGTC+TGG	+	tig0017690:334765-334784	None:intergenic	35.0%
	ACCGCAAAAGAAATCAAAGA+AGG	-	tig0017690:334858-334877	Msa1362210:CDS	35.0%
!!	GCCTTCTTTGATTTCTTTTG+CGG	+	tig0017690:334862-334881	None:intergenic	35.0%
!!	GTTTTGACGAGTCTTTTTGT+TGG	-	tig0017690:334947-334966	Msa1362210:CDS	35.0%
!	GCAAAACACCATTTAGAACA+GGG	+	tig0017690:335025-335044	None:intergenic	35.0%
!	AGCAAAACACCATTTAGAAC+AGG	+	tig0017690:335026-335045	None:intergenic	35.0%
!	ATTTTGTTGCGGAAACACTT+TGG	-	tig0017690:335058-335077	Msa1362210:CDS	35.0%
!	CTCATCCAAAGGATTTTTGT+GGG	+	tig0017690:334286-334305	None:intergenic	35.0%
!	TCTCATCCAAAGGATTTTTG+TGG	+	tig0017690:334287-334306	None:intergenic	35.0%
	TAACCTTCATGTACATGTCA+TGG	+	tig0017690:334378-334397	None:intergenic	35.0%
	TGACATGTACATGAAGGTTA+AGG	-	tig0017690:334378-334397	Msa1362210:three_prime_UTR	35.0%
	GACATGTACATGAAGGTTAA+GGG	-	tig0017690:334379-334398	Msa1362210:three_prime_UTR	35.0%
!	TTGTAAAATGTTTAGGGTCC+TGG	-	tig0017690:334682-334701	Msa1362210:intron	35.0%
	TTATAATACTCACTGGGTCT+GGG	+	tig0017690:334764-334783	None:intergenic	35.0%
	ATTATAATACTCACTGGGTC+TGG	+	tig0017690:334765-334784	None:intergenic	35.0%
	ACCGCAAAAGAAATCAAAGA+AGG	-	tig0017690:334858-334877	Msa1362210:CDS	35.0%
!!	GCCTTCTTTGATTTCTTTTG+CGG	+	tig0017690:334862-334881	None:intergenic	35.0%
!!	GTTTTGACGAGTCTTTTTGT+TGG	-	tig0017690:334947-334966	Msa1362210:CDS	35.0%
!	GCAAAACACCATTTAGAACA+GGG	+	tig0017690:335025-335044	None:intergenic	35.0%
!	AGCAAAACACCATTTAGAAC+AGG	+	tig0017690:335026-335045	None:intergenic	35.0%
!	ATTTTGTTGCGGAAACACTT+TGG	-	tig0017690:335058-335077	Msa1362210:CDS	35.0%
	AATGTGCATAGGTAAGAGGA+AGG	-	tig0017690:334240-334259	Msa1362210:three_prime_UTR	40.0%
	ATGTGCATAGGTAAGAGGAA+GGG	-	tig0017690:334241-334260	Msa1362210:three_prime_UTR	40.0%
	CATGTGCTTGTCAATCTTCT+TGG	+	tig0017690:334353-334372	None:intergenic	40.0%
	GTACCATGACATGTACATGA+AGG	-	tig0017690:334372-334391	Msa1362210:three_prime_UTR	40.0%
!	TAAAATGTTTAGGGTCCTGG+AGG	-	tig0017690:334685-334704	Msa1362210:intron	40.0%
	AGATTGCTTGGCTGAATTGT+TGG	-	tig0017690:334894-334913	Msa1362210:CDS	40.0%
	GATTGCTTGGCTGAATTGTT+GGG	-	tig0017690:334895-334914	Msa1362210:CDS	40.0%
!!	CTACTTTAGAACAGCAACTG+AGG	+	tig0017690:334928-334947	None:intergenic	40.0%
	TCCTCTTACCTATGCACATT+TGG	+	tig0017690:334240-334259	None:intergenic	40.0%
	AATGTGCATAGGTAAGAGGA+AGG	-	tig0017690:334240-334259	Msa1362210:three_prime_UTR	40.0%
	ATGTGCATAGGTAAGAGGAA+GGG	-	tig0017690:334241-334260	Msa1362210:three_prime_UTR	40.0%
	CATGTGCTTGTCAATCTTCT+TGG	+	tig0017690:334353-334372	None:intergenic	40.0%
	GTACCATGACATGTACATGA+AGG	-	tig0017690:334372-334391	Msa1362210:three_prime_UTR	40.0%
!	TAAAATGTTTAGGGTCCTGG+AGG	-	tig0017690:334685-334704	Msa1362210:intron	40.0%
	AGATTGCTTGGCTGAATTGT+TGG	-	tig0017690:334894-334913	Msa1362210:CDS	40.0%
	GATTGCTTGGCTGAATTGTT+GGG	-	tig0017690:334895-334914	Msa1362210:CDS	40.0%
!!	CTACTTTAGAACAGCAACTG+AGG	+	tig0017690:334928-334947	None:intergenic	40.0%
	GGCTTCCCACAAAAATCCTT+TGG	-	tig0017690:334278-334297	Msa1362210:three_prime_UTR	45.0%
	CACGCATTCTTCTCATCCAA+AGG	+	tig0017690:334297-334316	None:intergenic	45.0%
	TCACAAGTCCAAAGCTGAGA+AGG	-	tig0017690:334441-334460	Msa1362210:three_prime_UTR	45.0%
	AACAATCATGCATAGCAGGG+CGG	+	tig0017690:334816-334835	None:intergenic	45.0%
	GGCTTCCCACAAAAATCCTT+TGG	-	tig0017690:334278-334297	Msa1362210:three_prime_UTR	45.0%
	CACGCATTCTTCTCATCCAA+AGG	+	tig0017690:334297-334316	None:intergenic	45.0%
	TCACAAGTCCAAAGCTGAGA+AGG	-	tig0017690:334441-334460	Msa1362210:three_prime_UTR	45.0%
	AACAATCATGCATAGCAGGG+CGG	+	tig0017690:334816-334835	None:intergenic	45.0%
!!	TAAGAGGAAGGGTACCAGAG+AGG	-	tig0017690:334252-334271	Msa1362210:three_prime_UTR	50.0%
	TGTCAATCTTCTTGGCCTCC+CGG	+	tig0017690:334345-334364	None:intergenic	50.0%
!	CTCTCTAGCCTTCTCAGCTT+TGG	+	tig0017690:334452-334471	None:intergenic	50.0%
	GACCTTGTCTGACCAGTTTG+AGG	-	tig0017690:334474-334493	Msa1362210:three_prime_UTR	50.0%
	TCCTAGCATGCTTCCTCTCA+CGG	+	tig0017690:334525-334544	None:intergenic	50.0%
!	TGAGAGGAAGCATGCTAGGA+GGG	-	tig0017690:334525-334544	Msa1362210:intron	50.0%
!!	GTTGGCTTTGTTGCAGCAAC+AGG	+	tig0017690:334742-334761	None:intergenic	50.0%
	AATACTCACTGGGTCTGGGT+TGG	+	tig0017690:334760-334779	None:intergenic	50.0%
	CAAGCAATCTCAGACTGCAG+CGG	+	tig0017690:334884-334903	None:intergenic	50.0%
!!	TAAGAGGAAGGGTACCAGAG+AGG	-	tig0017690:334252-334271	Msa1362210:three_prime_UTR	50.0%
	TGTCAATCTTCTTGGCCTCC+CGG	+	tig0017690:334345-334364	None:intergenic	50.0%
!	CTCTCTAGCCTTCTCAGCTT+TGG	+	tig0017690:334452-334471	None:intergenic	50.0%
	GACCTTGTCTGACCAGTTTG+AGG	-	tig0017690:334474-334493	Msa1362210:three_prime_UTR	50.0%
	TCCTAGCATGCTTCCTCTCA+CGG	+	tig0017690:334525-334544	None:intergenic	50.0%
!	TGAGAGGAAGCATGCTAGGA+GGG	-	tig0017690:334525-334544	Msa1362210:intron	50.0%
!!	GTTGGCTTTGTTGCAGCAAC+AGG	+	tig0017690:334742-334761	None:intergenic	50.0%
	AATACTCACTGGGTCTGGGT+TGG	+	tig0017690:334760-334779	None:intergenic	50.0%
	CAAGCAATCTCAGACTGCAG+CGG	+	tig0017690:334884-334903	None:intergenic	50.0%
	GACGTTTGCTCCGCAAGTAC+CGG	-	tig0017690:334323-334342	Msa1362210:three_prime_UTR	55.0%
	ACGTTTGCTCCGCAAGTACC+GGG	-	tig0017690:334324-334343	Msa1362210:three_prime_UTR	55.0%
	GGCCTCAAACTGGTCAGACA+AGG	+	tig0017690:334479-334498	None:intergenic	55.0%
	TGGCACGTTTGGCCTCAAAC+TGG	+	tig0017690:334489-334508	None:intergenic	55.0%
	GGCCAAACGTGCCAAGAACA+AGG	-	tig0017690:334495-334514	Msa1362210:CDS	55.0%
!!	GGCCTTGTTCTTGGCACGTT+TGG	+	tig0017690:334500-334519	None:intergenic	55.0%
!	GTGAGAGGAAGCATGCTAGG+AGG	-	tig0017690:334524-334543	Msa1362210:intron	55.0%
	ATCATGCATAGCAGGGCGGA+AGG	+	tig0017690:334812-334831	None:intergenic	55.0%
!	CGCTGCAGTCTGAGATTGCT+TGG	-	tig0017690:334882-334901	Msa1362210:CDS	55.0%
	GACGTTTGCTCCGCAAGTAC+CGG	-	tig0017690:334323-334342	Msa1362210:three_prime_UTR	55.0%
	ACGTTTGCTCCGCAAGTACC+GGG	-	tig0017690:334324-334343	Msa1362210:three_prime_UTR	55.0%
	GGCCTCAAACTGGTCAGACA+AGG	+	tig0017690:334479-334498	None:intergenic	55.0%
	TGGCACGTTTGGCCTCAAAC+TGG	+	tig0017690:334489-334508	None:intergenic	55.0%
	GGCCAAACGTGCCAAGAACA+AGG	-	tig0017690:334495-334514	Msa1362210:CDS	55.0%
!!	GGCCTTGTTCTTGGCACGTT+TGG	+	tig0017690:334500-334519	None:intergenic	55.0%
!	GTGAGAGGAAGCATGCTAGG+AGG	-	tig0017690:334524-334543	Msa1362210:intron	55.0%
	ATCATGCATAGCAGGGCGGA+AGG	+	tig0017690:334812-334831	None:intergenic	55.0%
!	CGCTGCAGTCTGAGATTGCT+TGG	-	tig0017690:334882-334901	Msa1362210:CDS	55.0%
!!	GGAAGGGTACCAGAGAGGCA+AGG	-	tig0017690:334257-334276	Msa1362210:three_prime_UTR	60.0%
	TGTGGGAAGCCTTGCCTCTC+TGG	+	tig0017690:334269-334288	None:intergenic	60.0%
!!	TTTGCTCCGCAAGTACCGGG+AGG	-	tig0017690:334327-334346	Msa1362210:three_prime_UTR	60.0%
	TCTTGGCCTCCCGGTACTTG+CGG	+	tig0017690:334336-334355	None:intergenic	60.0%
!!	CTCACGGCTGGCCTTGTTCT+TGG	+	tig0017690:334509-334528	None:intergenic	60.0%
	AGAACAAGGCCAGCCGTGAG+AGG	-	tig0017690:334509-334528	Msa1362210:CDS	60.0%
	AGCATGCTTCCTCTCACGGC+TGG	+	tig0017690:334521-334540	None:intergenic	60.0%
!	GCCGTGAGAGGAAGCATGCT+AGG	-	tig0017690:334521-334540	Msa1362210:intron	60.0%
!	GAGGAAGCATGCTAGGAGGG+AGG	-	tig0017690:334528-334547	Msa1362210:intron	60.0%
!!	TCTGCTGGCTTCTCTCCTCC+AGG	+	tig0017690:334703-334722	None:intergenic	60.0%
	GCAGCACTAGGAGCTTCTGC+TGG	+	tig0017690:334718-334737	None:intergenic	60.0%
	GCAGCAACAGGTGCAGCACT+AGG	+	tig0017690:334730-334749	None:intergenic	60.0%
!!	GGAAGGGTACCAGAGAGGCA+AGG	-	tig0017690:334257-334276	Msa1362210:three_prime_UTR	60.0%
	TGTGGGAAGCCTTGCCTCTC+TGG	+	tig0017690:334269-334288	None:intergenic	60.0%
!!	TTTGCTCCGCAAGTACCGGG+AGG	-	tig0017690:334327-334346	Msa1362210:three_prime_UTR	60.0%
	TCTTGGCCTCCCGGTACTTG+CGG	+	tig0017690:334336-334355	None:intergenic	60.0%
!!	CTCACGGCTGGCCTTGTTCT+TGG	+	tig0017690:334509-334528	None:intergenic	60.0%
	AGAACAAGGCCAGCCGTGAG+AGG	-	tig0017690:334509-334528	Msa1362210:CDS	60.0%
	AGCATGCTTCCTCTCACGGC+TGG	+	tig0017690:334521-334540	None:intergenic	60.0%
!	GCCGTGAGAGGAAGCATGCT+AGG	-	tig0017690:334521-334540	Msa1362210:intron	60.0%
!	GAGGAAGCATGCTAGGAGGG+AGG	-	tig0017690:334528-334547	Msa1362210:intron	60.0%
!!	TCTGCTGGCTTCTCTCCTCC+AGG	+	tig0017690:334703-334722	None:intergenic	60.0%
	GCAGCACTAGGAGCTTCTGC+TGG	+	tig0017690:334718-334737	None:intergenic	60.0%
	GCAGCAACAGGTGCAGCACT+AGG	+	tig0017690:334730-334749	None:intergenic	60.0%

Chromosome	Type	Strat	End	Strand	Name
tig0017690	gene	334240	335148	334240	ID=Msa1362210;Name=Msa1362210
tig0017690	mRNA	334240	335148	334240	ID=Msa1362210-mRNA-1;Parent=Msa1362210;Name=Msa1362210-mRNA-1;_AED=0.12;_eAED=0.12;_QI=1\|1\|1\|1\|1\|1\|3\|254\|144
tig0017690	exon	334240	334530	334240	ID=Msa1362210-mRNA-1:exon:12863;Parent=Msa1362210-mRNA-1
tig0017690	exon	334618	334691	334618	ID=Msa1362210-mRNA-1:exon:12862;Parent=Msa1362210-mRNA-1
tig0017690	exon	334824	335148	334824	ID=Msa1362210-mRNA-1:exon:12861;Parent=Msa1362210-mRNA-1
tig0017690	five_prime_UTR	335148	335148	335148	ID=Msa1362210-mRNA-1:five_prime_utr;Parent=Msa1362210-mRNA-1
tig0017690	CDS	334824	335147	334824	ID=Msa1362210-mRNA-1:cds;Parent=Msa1362210-mRNA-1
tig0017690	CDS	334618	334691	334618	ID=Msa1362210-mRNA-1:cds;Parent=Msa1362210-mRNA-1
tig0017690	CDS	334494	334530	334494	ID=Msa1362210-mRNA-1:cds;Parent=Msa1362210-mRNA-1
tig0017690	three_prime_UTR	334240	334493	334240	ID=Msa1362210-mRNA-1:three_prime_utr;Parent=Msa1362210-mRNA-1

Gene Sequence

>Msa1362210

ATGTGCATAGGTAAGAGGAAGGGTACCAGAGAGGCAAGGCTTCCCACAAAAATCCTTTGGATGAGAAGAATGCGTGTTCTCAGACGTTTGCTCCGCAAGTACCGGGAGGCCAAGAAGATTGACAAGCACATGTACCATGACATGTACATGAAGGTTAAGGGTAATGTGTTTAAGAATAAGAGAGTTCTGATGGAGAGCATTCACAAGTCCAAAGCTGAGAAGGCTAGAGAGAAGACCTTGTCTGACCAGTTTGAGGCCAAACGTGCCAAGAACAAGGCCAGCCGTGAGAGGAAGCATGCTAGGAGGGAGGAGCGTTTCGCTCAAGGTCCTGGAGGAGAGAAGCCAGCAGAAGCTCCTAGTGCTGCACCTGTTGCTGCAACAAAGCCAACCCAGACCCAACCGCAAAAGAAATCAAAGAAGGCCGCTGCAGTCTGA

Protein sequence

>Msa1362210

MCIGKRKGTREARLPTKILWMRRMRVLRRLLRKYREAKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKHARREERFAQGPGGEKPAEAPSAAPVAATKPTQTQPQKKSKKAAAV*