Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0450330 | XP_003601257.1 | 97.561 | 164 | 4 | 0 | 1 | 164 | 1 | 164 | 3.19e-116 | 336 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0450330 | sp|O49627|ISU1_ARATH | 80.392 | 153 | 28 | 2 | 5 | 156 | 7 | 158 | 9.69e-84 | 246 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0450330 | B7FHC6 | 97.561 | 164 | 4 | 0 | 1 | 164 | 1 | 164 | 1.52e-116 | 336 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0039750 | Msa0450330 | -0.803739 | 3.019453e-49 | -8.615850e-47 |
| Msa0044530 | Msa0450330 | 0.819613 | 1.059383e-52 | -8.615850e-47 |
| Msa0063940 | Msa0450330 | -0.806434 | 8.241575e-50 | -8.615850e-47 |
| Msa0091220 | Msa0450330 | 0.812301 | 4.542779e-51 | -8.615850e-47 |
| Msa0091240 | Msa0450330 | 0.816673 | 4.897600e-52 | -8.615850e-47 |
| Msa0161480 | Msa0450330 | -0.803296 | 3.729475e-49 | -8.615850e-47 |
| Msa0437440 | Msa0450330 | 0.813597 | 2.362058e-51 | -8.615850e-47 |
| Msa0450330 | Msa0526150 | -0.806379 | 8.466316e-50 | -8.615850e-47 |
| Msa0450330 | Msa0726170 | 0.819145 | 1.354691e-52 | -8.615850e-47 |
| Msa0450330 | Msa0742370 | 0.805442 | 1.332555e-49 | -8.615850e-47 |
| Msa0450330 | Msa0795750 | -0.807748 | 4.344516e-50 | -8.615850e-47 |
| Msa0450330 | Msa0862480 | 0.801469 | 8.872039e-49 | -8.615850e-47 |
| Msa0450330 | Msa0903340 | -0.824711 | 6.960696e-54 | -8.615850e-47 |
| Msa0450330 | Msa0973080 | 0.809618 | 1.730634e-50 | -8.615850e-47 |
| Msa0450330 | Msa1197720 | -0.820067 | 8.340870e-53 | -8.615850e-47 |
| Msa0450330 | Msa1251410 | -0.813370 | 2.649324e-51 | -8.615850e-47 |
| Msa0450330 | Msa1396200 | 0.825117 | 5.583430e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0450330 | MtrunA17_Chr3g0117561 | 97.561 | 164 | 4 | 0 | 1 | 164 | 1 | 164 | 2.94e-120 | 336 |
| Msa0450330 | MtrunA17_Chr3g0117571 | 64.615 | 130 | 11 | 2 | 66 | 160 | 1 | 130 | 2.58e-45 | 145 |
| Msa0450330 | MtrunA17_Chr3g0117541 | 92.000 | 50 | 4 | 0 | 66 | 115 | 1 | 50 | 6.69e-26 | 93.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0450330 | AT4G22220.1 | 80.392 | 153 | 28 | 2 | 5 | 156 | 7 | 158 | 9.85e-85 | 246 |
| Msa0450330 | AT4G04080.1 | 70.253 | 158 | 45 | 2 | 1 | 157 | 1 | 157 | 2.25e-79 | 233 |
| Msa0450330 | AT3G01020.1 | 72.662 | 139 | 38 | 0 | 26 | 164 | 25 | 163 | 4.02e-71 | 212 |
Find 60 sgRNAs with CRISPR-Local
Find 203 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGTACTTACGTGTTCTTAA+TGG | 0.261409 | 3_3:-35713721 | None:intergenic |
| GCAGCTACTGAATGGGTAAA+AGG | 0.280013 | 3_3:+35713675 | Msa0450330:intron |
| TGCATGATTTCTTCCATTGC+TGG | 0.291911 | 3_3:+35715684 | Msa0450330:exon |
| GATGCTCGCTTTAAGACTTT+TGG | 0.312604 | 3_3:+35713459 | Msa0450330:CDS |
| ATGCTGCAGTGAAGCTTAAC+TGG | 0.354352 | 3_3:-35715571 | None:intergenic |
| AGACGCCAAATCCAGCGATT+AGG | 0.369036 | 3_3:+35713265 | Msa0450330:CDS |
| AGAATCCTAATCGCTGGATT+TGG | 0.371565 | 3_3:-35713270 | None:intergenic |
| TATCGAAGGATCCAACATTC+CGG | 0.389446 | 3_3:-35713338 | None:intergenic |
| CAAATCAAGGTTGATGAGAA+TGG | 0.396788 | 3_3:+35713426 | Msa0450330:CDS |
| AGACTATGACAAATACAATA+TGG | 0.398577 | 3_3:-35715872 | None:intergenic |
| GATGAAGTTTCTTGTTTGAA+TGG | 0.409246 | 3_3:+35715915 | Msa0450330:three_prime_UTR |
| ATCGAAGGATCCAACATTCC+GGG | 0.431036 | 3_3:-35713337 | None:intergenic |
| TATAAATACTTGTATCGGCT+TGG | 0.437369 | 3_3:+35715839 | Msa0450330:three_prime_UTR |
| TGCCTCGGCTACTGCGGCCA+CGG | 0.446467 | 3_3:+35715645 | Msa0450330:CDS |
| GGTTTCAAACAAAATCGTTA+AGG | 0.452051 | 3_3:-35716019 | None:intergenic |
| ATGGTGGGAACTGGTCTTGT+TGG | 0.461756 | 3_3:+35713372 | Msa0450330:CDS |
| AAATCAAGGTTGATGAGAAT+GGG | 0.463058 | 3_3:+35713427 | Msa0450330:CDS |
| CGCAAAGAAACTCGTGCAAA+CGG | 0.463462 | 3_3:+35713233 | Msa0450330:CDS |
| GACGTTATGACAATACAATA+TGG | 0.469350 | 3_3:-35715815 | None:intergenic |
| TGTTTGAATGGTTTGTTCGT+AGG | 0.472869 | 3_3:+35715927 | Msa0450330:three_prime_UTR |
| AATGATCCGATGGTGGGAAC+TGG | 0.473170 | 3_3:+35713363 | Msa0450330:CDS |
| CTTATAAATACTTGTATCGC+GGG | 0.500770 | 3_3:+35715893 | Msa0450330:three_prime_UTR |
| TACGACAATCCCCGGAATGT+TGG | 0.510499 | 3_3:+35713327 | Msa0450330:CDS |
| CGTCTTATAAATACTTGTAT+CGG | 0.511347 | 3_3:+35715834 | Msa0450330:three_prime_UTR |
| GCCTCGGCTACTGCGGCCAC+GGG | 0.517239 | 3_3:+35715646 | Msa0450330:CDS |
| TGTCATGAAGCTTCAAATCA+AGG | 0.528073 | 3_3:+35713413 | Msa0450330:CDS |
| GCTATTGCTTCATCGTCCGT+TGG | 0.529119 | 3_3:+35713492 | Msa0450330:CDS |
| CGTGGAAGAATCCTAATCGC+TGG | 0.531980 | 3_3:-35713276 | None:intergenic |
| ATGGGTAAAAGGAAAGCAAA+TGG | 0.536082 | 3_3:+35713686 | Msa0450330:CDS |
| TGCAGTGAAGCTTAACTGGC+GGG | 0.542392 | 3_3:-35715567 | None:intergenic |
| TCCCGTGGCCGCAGTAGCCG+AGG | 0.550070 | 3_3:-35715647 | None:intergenic |
| TTTCATCATCATTCCAGCAA+TGG | 0.552059 | 3_3:-35715697 | None:intergenic |
| AATCGACTCATTAGCACCAT+TGG | 0.564226 | 3_3:-35715740 | None:intergenic |
| CGATAAGAATGATCCGATGG+TGG | 0.569162 | 3_3:+35713356 | Msa0450330:CDS |
| TTTCATTTCCACCACAAACA+AGG | 0.572499 | 3_3:+35713188 | Msa0450330:five_prime_UTR |
| TTATGAAGCTAAGCGTGCCT+CGG | 0.575006 | 3_3:+35715630 | Msa0450330:CDS |
| TGGATCACTACGACAATCCC+CGG | 0.588923 | 3_3:+35713319 | Msa0450330:CDS |
| CTTCATGACATCACCACAAG+CGG | 0.590457 | 3_3:-35713400 | None:intergenic |
| ATTCTACCACGAGAGGGTGG+TGG | 0.593190 | 3_3:+35713299 | Msa0450330:CDS |
| TAAGCGTGCCTCGGCTACTG+CGG | 0.598393 | 3_3:+35715639 | Msa0450330:CDS |
| TTCATGACATCACCACAAGC+GGG | 0.602959 | 3_3:-35713399 | None:intergenic |
| TCTTATAAATACTTGTATCG+CGG | 0.603648 | 3_3:+35715892 | Msa0450330:three_prime_UTR |
| TCGTTAGTATGATTCTCCAA+TGG | 0.604384 | 3_3:+35715724 | Msa0450330:three_prime_UTR |
| AAAAGGAAAGCAAATGGAGG+AGG | 0.604892 | 3_3:+35713692 | Msa0450330:CDS |
| CATCGGATCATTCTTATCGA+AGG | 0.605249 | 3_3:-35713352 | None:intergenic |
| ACAAGACCAGTTCCCACCAT+CGG | 0.608536 | 3_3:-35713369 | None:intergenic |
| TCACTGCAGCATGCTTGCTG+AGG | 0.608636 | 3_3:+35715582 | Msa0450330:CDS |
| GATAAGAATGATCCGATGGT+GGG | 0.625202 | 3_3:+35713357 | Msa0450330:CDS |
| TCCACGATTCTACCACGAGA+GGG | 0.625238 | 3_3:+35713293 | Msa0450330:CDS |
| TCGAAGGATCCAACATTCCG+GGG | 0.626085 | 3_3:-35713336 | None:intergenic |
| AGTGGCAGATTTGTCTCCCG+TGG | 0.628353 | 3_3:-35715662 | None:intergenic |
| CTGCAGTGAAGCTTAACTGG+CGG | 0.631259 | 3_3:-35715568 | None:intergenic |
| ACCCTCTCGTGGTAGAATCG+TGG | 0.631852 | 3_3:-35713294 | None:intergenic |
| CTTCGATAAGAATGATCCGA+TGG | 0.633992 | 3_3:+35713353 | Msa0450330:CDS |
| CTTGTTGGTGCACCCGCTTG+TGG | 0.637545 | 3_3:+35713387 | Msa0450330:CDS |
| AGTGATCCACCACCCTCTCG+TGG | 0.652272 | 3_3:-35713305 | None:intergenic |
| TTCCACGATTCTACCACGAG+AGG | 0.658430 | 3_3:+35713292 | Msa0450330:CDS |
| CAATGGAAGAAATCATGCAG+TGG | 0.672265 | 3_3:-35715680 | None:intergenic |
| GGTAAAAGGAAAGCAAATGG+AGG | 0.675966 | 3_3:+35713689 | Msa0450330:CDS |
| ACGATTCTACCACGAGAGGG+TGG | 0.684824 | 3_3:+35713296 | Msa0450330:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATCAAATTCAATAAAAA+GGG | - | chr3_3:35713593-35713612 | None:intergenic | 10.0% |
| !! | AATAATCAAATTCAATAAAA+AGG | - | chr3_3:35713594-35713613 | None:intergenic | 10.0% |
| !!! | TAACAATTTTTCATATAAAA+TGG | - | chr3_3:35714136-35714155 | None:intergenic | 10.0% |
| !!! | AATTCAGGATTTTTTTTTTT+AGG | + | chr3_3:35713549-35713568 | Msa0450330:intron | 15.0% |
| !!! | ATTCAGGATTTTTTTTTTTA+GGG | + | chr3_3:35713550-35713569 | Msa0450330:intron | 15.0% |
| !!! | TGCTATTTAAAAAAATAGAA+GGG | - | chr3_3:35714003-35714022 | None:intergenic | 15.0% |
| !!! | GATAATAGAGATTTAAAATA+AGG | + | chr3_3:35714442-35714461 | Msa0450330:intron | 15.0% |
| !! | CCAAAATATAATAAAACTTA+GGG | - | chr3_3:35714714-35714733 | None:intergenic | 15.0% |
| !!! | CCTAAGTTTTATTATATTTT+GGG | + | chr3_3:35714712-35714731 | Msa0450330:intron | 15.0% |
| !!! | TTCTGAGTTAATAAGTTTTA+GGG | + | chr3_3:35713930-35713949 | Msa0450330:intron | 20.0% |
| !! | GCTATTTAAAAAAATAGAAG+GGG | - | chr3_3:35714002-35714021 | None:intergenic | 20.0% |
| !!! | GTGCTATTTAAAAAAATAGA+AGG | - | chr3_3:35714004-35714023 | None:intergenic | 20.0% |
| !!! | GTTTCAGTAAATTAATTTGA+CGG | - | chr3_3:35714059-35714078 | None:intergenic | 20.0% |
| !! | TATTTCCAAATACATGATTT+GGG | + | chr3_3:35714186-35714205 | Msa0450330:intron | 20.0% |
| !! | AAATTAATAGCTTTCAACAA+TGG | + | chr3_3:35714470-35714489 | Msa0450330:intron | 20.0% |
| !!! | AGTTTTAACAGATCAATTAA+CGG | + | chr3_3:35714563-35714582 | Msa0450330:intron | 20.0% |
| !!! | TATCTATTTTAAGAGACTTT+AGG | + | chr3_3:35714609-35714628 | Msa0450330:intron | 20.0% |
| !!! | ATCTATTTTAAGAGACTTTA+GGG | + | chr3_3:35714610-35714629 | Msa0450330:intron | 20.0% |
| !! | ATTGTCTATTATAAAACTAG+AGG | + | chr3_3:35714639-35714658 | Msa0450330:intron | 20.0% |
| !! | TTGTCTATTATAAAACTAGA+GGG | + | chr3_3:35714640-35714659 | Msa0450330:intron | 20.0% |
| !!! | CCCTAAGTTTTATTATATTT+TGG | + | chr3_3:35714711-35714730 | Msa0450330:intron | 20.0% |
| !! | CCCAAAATATAATAAAACTT+AGG | - | chr3_3:35714715-35714734 | None:intergenic | 20.0% |
| !!! | TTGTTAACAATTTCCTTTTT+TGG | - | chr3_3:35714776-35714795 | None:intergenic | 20.0% |
| !!! | AAGATATTTTGTTGGTTTTA+TGG | + | chr3_3:35714910-35714929 | Msa0450330:intron | 20.0% |
| !! | ATAAACTCTTTATTCAAACA+GGG | - | chr3_3:35714956-35714975 | None:intergenic | 20.0% |
| !! | AATAAACTCTTTATTCAAAC+AGG | - | chr3_3:35714957-35714976 | None:intergenic | 20.0% |
| !! | AAAAAAAAAAAGAAACCAGA+AGG | - | chr3_3:35715345-35715364 | None:intergenic | 20.0% |
| !!! | TTTTTTCTTTTCCTTGTTTG+TGG | - | chr3_3:35713202-35713221 | None:intergenic | 25.0% |
| !!! | TTCATGTATTGGTTTGTTAT+AGG | + | chr3_3:35713525-35713544 | Msa0450330:intron | 25.0% |
| !!! | GTTCTGAGTTAATAAGTTTT+AGG | + | chr3_3:35713929-35713948 | Msa0450330:intron | 25.0% |
| ! | ATACATTTACAATAACCTCA+GGG | - | chr3_3:35713973-35713992 | None:intergenic | 25.0% |
| ! | ATTATTGTGAATCAGTTCAT+TGG | + | chr3_3:35714094-35714113 | Msa0450330:intron | 25.0% |
| ! | TTATTGTGAATCAGTTCATT+GGG | + | chr3_3:35714095-35714114 | Msa0450330:intron | 25.0% |
| ! | TCATATAAAATGGAATCCAA+AGG | - | chr3_3:35714126-35714145 | None:intergenic | 25.0% |
| ! | ATGTATTTGGAAATACGAAA+AGG | - | chr3_3:35714181-35714200 | None:intergenic | 25.0% |
| ! | GTATTTCCAAATACATGATT+TGG | + | chr3_3:35714185-35714204 | Msa0450330:intron | 25.0% |
| ! | GATAAATGCTCAATAAAAAG+AGG | + | chr3_3:35714310-35714329 | Msa0450330:intron | 25.0% |
| ! | CTCTATTATCATAATTCTCT+CGG | - | chr3_3:35714432-35714451 | None:intergenic | 25.0% |
| ! | ATTAACGGTATTAACTTAGA+AGG | + | chr3_3:35714578-35714597 | Msa0450330:intron | 25.0% |
| ! | TTAACGGTATTAACTTAGAA+GGG | + | chr3_3:35714579-35714598 | Msa0450330:intron | 25.0% |
| !!! | TCTATTTTAAGAGACTTTAG+GGG | + | chr3_3:35714611-35714630 | Msa0450330:intron | 25.0% |
| ! | TGTCTATTATAAAACTAGAG+GGG | + | chr3_3:35714641-35714660 | Msa0450330:intron | 25.0% |
| !!! | CTTTTTAAGCATACCAAAAA+AGG | + | chr3_3:35714760-35714779 | Msa0450330:intron | 25.0% |
| ! | ACATTTCTTCTTGAAATTGA+TGG | + | chr3_3:35714832-35714851 | Msa0450330:intron | 25.0% |
| !! | TGGTATATGAATTTTGTAGA+AGG | + | chr3_3:35714852-35714871 | Msa0450330:intron | 25.0% |
| !! | TATATGAATTTTGTAGAAGG+TGG | + | chr3_3:35714855-35714874 | Msa0450330:intron | 25.0% |
| !!! | TATTTTGTTGGTTTTATGGA+TGG | + | chr3_3:35714914-35714933 | Msa0450330:intron | 25.0% |
| !!! | ATTTTGTTGGTTTTATGGAT+GGG | + | chr3_3:35714915-35714934 | Msa0450330:intron | 25.0% |
| ! | AATAAGTGCTTATATGATCA+TGG | - | chr3_3:35714999-35715018 | None:intergenic | 25.0% |
| ! | TCAAATAAGTTAATCCAAAC+AGG | + | chr3_3:35715207-35715226 | Msa0450330:intron | 25.0% |
| ! | TCAACTTGTCATCATTAAAA+AGG | - | chr3_3:35715274-35715293 | None:intergenic | 25.0% |
| ! | TTTGTTAATGCTTCTATGAT+TGG | + | chr3_3:35715462-35715481 | Msa0450330:intron | 25.0% |
| !! | TTATTCAGACTTTTCTTGAT+TGG | + | chr3_3:35715782-35715801 | Msa0450330:three_prime_UTR | 25.0% |
| ! | CGTCTTATAAATACTTGTAT+CGG | + | chr3_3:35715834-35715853 | Msa0450330:three_prime_UTR | 25.0% |
| ! | AGACTATGACAAATACAATA+TGG | - | chr3_3:35715875-35715894 | None:intergenic | 25.0% |
| ! | TCTTATAAATACTTGTATCG+CGG | + | chr3_3:35715836-35715855 | Msa0450330:three_prime_UTR | 25.0% |
| !! | AAATCAAGGTTGATGAGAAT+GGG | + | chr3_3:35713427-35713446 | Msa0450330:CDS | 30.0% |
| !! | TGGTTTGTTATAGGAAATTC+AGG | + | chr3_3:35713534-35713553 | Msa0450330:intron | 30.0% |
| ATATTGTTTGCACTTGTGAT+TGG | + | chr3_3:35713841-35713860 | Msa0450330:intron | 30.0% | |
| TATTGTTTGCACTTGTGATT+GGG | + | chr3_3:35713842-35713861 | Msa0450330:intron | 30.0% | |
| TACATTTACAATAACCTCAG+GGG | - | chr3_3:35713972-35713991 | None:intergenic | 30.0% | |
| GATACATTTACAATAACCTC+AGG | - | chr3_3:35713974-35713993 | None:intergenic | 30.0% | |
| ! | TAAAAAAATAGAAGGGGTGT+TGG | - | chr3_3:35713996-35714015 | None:intergenic | 30.0% |
| ! | TCAGTAAATTAATTTGACGG+AGG | - | chr3_3:35714056-35714075 | None:intergenic | 30.0% |
| TGGAAATACGAAAAGGAATT+GGG | - | chr3_3:35714174-35714193 | None:intergenic | 30.0% | |
| TTGGAAATACGAAAAGGAAT+TGG | - | chr3_3:35714175-35714194 | None:intergenic | 30.0% | |
| !! | TACAATGTGTTCATTTTAGC+TGG | - | chr3_3:35714228-35714247 | None:intergenic | 30.0% |
| TTGTTCTTTCTGTATGAACA+GGG | - | chr3_3:35714278-35714297 | None:intergenic | 30.0% | |
| TTTGTTCTTTCTGTATGAAC+AGG | - | chr3_3:35714279-35714298 | None:intergenic | 30.0% | |
| AGAAAGAACAAATACCTTGT+GGG | + | chr3_3:35714287-35714306 | Msa0450330:intron | 30.0% | |
| ! | ATCTGAAACATGAGAATAAG+AGG | + | chr3_3:35714370-35714389 | Msa0450330:intron | 30.0% |
| TTCAACAATGGCTGAAATAT+TGG | + | chr3_3:35714482-35714501 | Msa0450330:intron | 30.0% | |
| TCAACAATGGCTGAAATATT+GGG | + | chr3_3:35714483-35714502 | Msa0450330:intron | 30.0% | |
| ! | TTAAAGACAATTTTCACCCA+AGG | - | chr3_3:35714523-35714542 | None:intergenic | 30.0% |
| ! | TGTCATTTAAAGAGATCTCA+AGG | + | chr3_3:35714671-35714690 | Msa0450330:intron | 30.0% |
| GTCATTTAAAGAGATCTCAA+GGG | + | chr3_3:35714672-35714691 | Msa0450330:intron | 30.0% | |
| ! | GTAGAGCAAAGATATTTTGT+TGG | + | chr3_3:35714902-35714921 | Msa0450330:intron | 30.0% |
| !!! | TTTTGTTGGTTTTATGGATG+GGG | + | chr3_3:35714916-35714935 | Msa0450330:intron | 30.0% |
| !!! | TGCTGTTTTATAACCTATCA+TGG | + | chr3_3:35715082-35715101 | Msa0450330:intron | 30.0% |
| TTTCATAAGCTATCCATGAT+AGG | - | chr3_3:35715098-35715117 | None:intergenic | 30.0% | |
| AAACACTTGTGACACTATTT+GGG | - | chr3_3:35715171-35715190 | None:intergenic | 30.0% | |
| TAAACACTTGTGACACTATT+TGG | - | chr3_3:35715172-35715191 | None:intergenic | 30.0% | |
| AAATAGTGTCACAAGTGTTT+AGG | + | chr3_3:35715171-35715190 | Msa0450330:intron | 30.0% | |
| GCAAAAAAGAACAAAACCAA+GGG | - | chr3_3:35715233-35715252 | None:intergenic | 30.0% | |
| TGCAAAAAAGAACAAAACCA+AGG | - | chr3_3:35715234-35715253 | None:intergenic | 30.0% | |
| TAAGATTAAATCCTACAGAC+GGG | - | chr3_3:35715419-35715438 | None:intergenic | 30.0% | |
| GTAAGATTAAATCCTACAGA+CGG | - | chr3_3:35715420-35715439 | None:intergenic | 30.0% | |
| !!! | ATCTTTAACAGCTGCTTTTA+TGG | - | chr3_3:35715611-35715630 | None:intergenic | 30.0% |
| GACGTTATGACAATACAATA+TGG | - | chr3_3:35715818-35715837 | None:intergenic | 30.0% | |
| !! | TATAAATACTTGTATCGGCT+TGG | + | chr3_3:35715839-35715858 | Msa0450330:three_prime_UTR | 30.0% |
| CTTATAAATACTTGTATCGC+GGG | + | chr3_3:35715893-35715912 | Msa0450330:three_prime_UTR | 30.0% | |
| ! | GATGAAGTTTCTTGTTTGAA+TGG | + | chr3_3:35715915-35715934 | Msa0450330:three_prime_UTR | 30.0% |
| GGTTTCAAACAAAATCGTTA+AGG | - | chr3_3:35716022-35716041 | None:intergenic | 30.0% | |
| TTTCATTTCCACCACAAACA+AGG | + | chr3_3:35713188-35713207 | Msa0450330:five_prime_UTR | 35.0% | |
| !! | TTTCTTTTCCTTGTTTGTGG+TGG | - | chr3_3:35713199-35713218 | None:intergenic | 35.0% |
| TGTCATGAAGCTTCAAATCA+AGG | + | chr3_3:35713413-35713432 | Msa0450330:CDS | 35.0% | |
| !! | CAAATCAAGGTTGATGAGAA+TGG | + | chr3_3:35713426-35713445 | Msa0450330:CDS | 35.0% |
| !!! | GTAGGTCGTTTTTCATGTAT+TGG | + | chr3_3:35713514-35713533 | Msa0450330:intron | 35.0% |
| ATGGGTAAAAGGAAAGCAAA+TGG | + | chr3_3:35713686-35713705 | Msa0450330:CDS | 35.0% | |
| CAGTACTTACGTGTTCTTAA+TGG | - | chr3_3:35713724-35713743 | None:intergenic | 35.0% | |
| CATTAAGAACACGTAAGTAC+TGG | + | chr3_3:35713722-35713741 | Msa0450330:intron | 35.0% | |
| TGCAAATTTGTGTCTTTGTC+TGG | + | chr3_3:35713766-35713785 | Msa0450330:intron | 35.0% | |
| AATGACATCCATAACAAGCA+TGG | + | chr3_3:35713895-35713914 | Msa0450330:intron | 35.0% | |
| ! | TACTGTTTCCATGCTTGTTA+TGG | - | chr3_3:35713906-35713925 | None:intergenic | 35.0% |
| ! | TTTAGCTGGCTTAAACATGA+TGG | - | chr3_3:35714214-35714233 | None:intergenic | 35.0% |
| CAGAAAGAACAAATACCTTG+TGG | + | chr3_3:35714286-35714305 | Msa0450330:intron | 35.0% | |
| GAAAGAACAAATACCTTGTG+GGG | + | chr3_3:35714288-35714307 | Msa0450330:intron | 35.0% | |
| AGGCCATTATTCTTTGATGA+AGG | + | chr3_3:35714406-35714425 | Msa0450330:intron | 35.0% | |
| !! | ATTTTAAGAGACTTTAGGGG+AGG | + | chr3_3:35714614-35714633 | Msa0450330:intron | 35.0% |
| ATTTAAAGAGATCTCAAGGG+AGG | + | chr3_3:35714675-35714694 | Msa0450330:intron | 35.0% | |
| !! | TATGCTTAAAAAGTGTTGCG+GGG | - | chr3_3:35714753-35714772 | None:intergenic | 35.0% |
| !! | GTATGCTTAAAAAGTGTTGC+GGG | - | chr3_3:35714754-35714773 | None:intergenic | 35.0% |
| !! | GGTATGCTTAAAAAGTGTTG+CGG | - | chr3_3:35714755-35714774 | None:intergenic | 35.0% |
| !! | TTTTGTAGAAGGTGGATTTC+TGG | + | chr3_3:35714863-35714882 | Msa0450330:intron | 35.0% |
| AACATAGCAGCAAAAGATGA+TGG | - | chr3_3:35715317-35715336 | None:intergenic | 35.0% | |
| GGCATGATTCATAAACCAAA+AGG | - | chr3_3:35715398-35715417 | None:intergenic | 35.0% | |
| !! | GCTTCTATGATTGGTAGTTT+TGG | + | chr3_3:35715471-35715490 | Msa0450330:intron | 35.0% |
| TTTCATCATCATTCCAGCAA+TGG | - | chr3_3:35715700-35715719 | None:intergenic | 35.0% | |
| TCGTTAGTATGATTCTCCAA+TGG | + | chr3_3:35715724-35715743 | Msa0450330:three_prime_UTR | 35.0% | |
| !! | TGTTTGAATGGTTTGTTCGT+AGG | + | chr3_3:35715927-35715946 | Msa0450330:three_prime_UTR | 35.0% |
| AGAATCCTAATCGCTGGATT+TGG | - | chr3_3:35713273-35713292 | None:intergenic | 40.0% | |
| TATCGAAGGATCCAACATTC+CGG | - | chr3_3:35713341-35713360 | None:intergenic | 40.0% | |
| CATCGGATCATTCTTATCGA+AGG | - | chr3_3:35713355-35713374 | None:intergenic | 40.0% | |
| CTTCGATAAGAATGATCCGA+TGG | + | chr3_3:35713353-35713372 | Msa0450330:CDS | 40.0% | |
| GATAAGAATGATCCGATGGT+GGG | + | chr3_3:35713357-35713376 | Msa0450330:CDS | 40.0% | |
| !!! | GATGCTCGCTTTAAGACTTT+TGG | + | chr3_3:35713459-35713478 | Msa0450330:CDS | 40.0% |
| !!! | CGCTTTAAGACTTTTGGTTG+TGG | + | chr3_3:35713465-35713484 | Msa0450330:CDS | 40.0% |
| CATGAAAAACGACCTACCAA+CGG | - | chr3_3:35713511-35713530 | None:intergenic | 40.0% | |
| ! | ATCGTTTTGCAGCTACTGAA+TGG | + | chr3_3:35713667-35713686 | Msa0450330:intron | 40.0% |
| ! | TCGTTTTGCAGCTACTGAAT+GGG | + | chr3_3:35713668-35713687 | Msa0450330:intron | 40.0% |
| GGTAAAAGGAAAGCAAATGG+AGG | + | chr3_3:35713689-35713708 | Msa0450330:CDS | 40.0% | |
| AAAAGGAAAGCAAATGGAGG+AGG | + | chr3_3:35713692-35713711 | Msa0450330:CDS | 40.0% | |
| ACTTGTGATTGGGTGAAGAA+TGG | + | chr3_3:35713852-35713871 | Msa0450330:intron | 40.0% | |
| GAAGAATGGTTATGTGCTTG+AGG | + | chr3_3:35713866-35713885 | Msa0450330:intron | 40.0% | |
| ATTTACAATAACCTCAGGGG+AGG | - | chr3_3:35713969-35713988 | None:intergenic | 40.0% | |
| TTTGACAGTGTCAAAGGCAA+GGG | - | chr3_3:35714033-35714052 | None:intergenic | 40.0% | |
| ! | AGTTCATTGGGTATTGCCTT+TGG | + | chr3_3:35714107-35714126 | Msa0450330:intron | 40.0% |
| TGGCACCCAAATCATGTATT+TGG | - | chr3_3:35714194-35714213 | None:intergenic | 40.0% | |
| ATTGAGCATTTATCCCCACA+AGG | - | chr3_3:35714304-35714323 | None:intergenic | 40.0% | |
| ACATGAGAATAAGAGGTCTG+CGG | + | chr3_3:35714377-35714396 | Msa0450330:intron | 40.0% | |
| !!! | TAAGAGGTCTGCGGTTTTTT+AGG | + | chr3_3:35714386-35714405 | Msa0450330:intron | 40.0% |
| CGGCCTTCATCAAAGAATAA+TGG | - | chr3_3:35714412-35714431 | None:intergenic | 40.0% | |
| ACAATGGCTGAAATATTGGG+TGG | + | chr3_3:35714486-35714505 | Msa0450330:intron | 40.0% | |
| TAGAGCACAGAAGAATATGG+TGG | - | chr3_3:35714806-35714825 | None:intergenic | 40.0% | |
| ACCATATTCTTCTGTGCTCT+AGG | + | chr3_3:35714805-35714824 | Msa0450330:intron | 40.0% | |
| ATGGATGGGGTTTGAAGATA+TGG | + | chr3_3:35714929-35714948 | Msa0450330:intron | 40.0% | |
| TGGATGGGGTTTGAAGATAT+GGG | + | chr3_3:35714930-35714949 | Msa0450330:intron | 40.0% | |
| ! | CTGCTATGTTTTCAACCTTC+TGG | + | chr3_3:35715327-35715346 | Msa0450330:intron | 40.0% |
| ! | TTTTCCTTCTTTTCCCTTCC+AGG | + | chr3_3:35715368-35715387 | Msa0450330:intron | 40.0% |
| CAATGGAAGAAATCATGCAG+TGG | - | chr3_3:35715683-35715702 | None:intergenic | 40.0% | |
| TGCATGATTTCTTCCATTGC+TGG | + | chr3_3:35715684-35715703 | Msa0450330:exon | 40.0% | |
| ! | AATCGACTCATTAGCACCAT+TGG | - | chr3_3:35715743-35715762 | None:intergenic | 40.0% |
| ! | GACTTTTCTTGATTGGAGCT+AGG | + | chr3_3:35715789-35715808 | Msa0450330:three_prime_UTR | 40.0% |
| CGCAAAGAAACTCGTGCAAA+CGG | + | chr3_3:35713233-35713252 | Msa0450330:CDS | 45.0% | |
| ATCGAAGGATCCAACATTCC+GGG | - | chr3_3:35713340-35713359 | None:intergenic | 45.0% | |
| CGATAAGAATGATCCGATGG+TGG | + | chr3_3:35713356-35713375 | Msa0450330:CDS | 45.0% | |
| TTCATGACATCACCACAAGC+GGG | - | chr3_3:35713402-35713421 | None:intergenic | 45.0% | |
| CTTCATGACATCACCACAAG+CGG | - | chr3_3:35713403-35713422 | None:intergenic | 45.0% | |
| GCAGCTACTGAATGGGTAAA+AGG | + | chr3_3:35713675-35713694 | Msa0450330:intron | 45.0% | |
| GTTTGACAGTGTCAAAGGCA+AGG | - | chr3_3:35714034-35714053 | None:intergenic | 45.0% | |
| GGTGGTTGAGTAGATACCTT+GGG | + | chr3_3:35714504-35714523 | Msa0450330:intron | 45.0% | |
| !! | TAAAAAGTGTTGCGGGGCAT+CGG | - | chr3_3:35714747-35714766 | None:intergenic | 45.0% |
| GCCTAGAGCACAGAAGAATA+TGG | - | chr3_3:35714809-35714828 | None:intergenic | 45.0% | |
| AGTTAATCCAAACAGGCCCT+TGG | + | chr3_3:35715214-35715233 | Msa0450330:intron | 45.0% | |
| AACAAAACCAAGGGCCTGTT+TGG | - | chr3_3:35715224-35715243 | None:intergenic | 45.0% | |
| CATAAACCAAAAGGTCCTCC+TGG | - | chr3_3:35715389-35715408 | None:intergenic | 45.0% | |
| TATGAATCATGCCCGTCTGT+AGG | + | chr3_3:35715405-35715424 | Msa0450330:intron | 45.0% | |
| ATGCTGCAGTGAAGCTTAAC+TGG | - | chr3_3:35715574-35715593 | None:intergenic | 45.0% | |
| TTATGAAGCTAAGCGTGCCT+CGG | + | chr3_3:35715630-35715649 | Msa0450330:CDS | 45.0% | |
| AGACGCCAAATCCAGCGATT+AGG | + | chr3_3:35713265-35713284 | Msa0450330:CDS | 50.0% | |
| CGTGGAAGAATCCTAATCGC+TGG | - | chr3_3:35713279-35713298 | None:intergenic | 50.0% | |
| TTCCACGATTCTACCACGAG+AGG | + | chr3_3:35713292-35713311 | Msa0450330:CDS | 50.0% | |
| TCCACGATTCTACCACGAGA+GGG | + | chr3_3:35713293-35713312 | Msa0450330:CDS | 50.0% | |
| TGGATCACTACGACAATCCC+CGG | + | chr3_3:35713319-35713338 | Msa0450330:CDS | 50.0% | |
| TACGACAATCCCCGGAATGT+TGG | + | chr3_3:35713327-35713346 | Msa0450330:CDS | 50.0% | |
| TCGAAGGATCCAACATTCCG+GGG | - | chr3_3:35713339-35713358 | None:intergenic | 50.0% | |
| !! | AATGATCCGATGGTGGGAAC+TGG | + | chr3_3:35713363-35713382 | Msa0450330:CDS | 50.0% |
| ACAAGACCAGTTCCCACCAT+CGG | - | chr3_3:35713372-35713391 | None:intergenic | 50.0% | |
| !! | ATGGTGGGAACTGGTCTTGT+TGG | + | chr3_3:35713372-35713391 | Msa0450330:CDS | 50.0% |
| GCTATTGCTTCATCGTCCGT+TGG | + | chr3_3:35713492-35713511 | Msa0450330:CDS | 50.0% | |
| TTGCTTCATCGTCCGTTGGT+AGG | + | chr3_3:35713496-35713515 | Msa0450330:intron | 50.0% | |
| AATTACACTCACCTCCCCTG+AGG | + | chr3_3:35713955-35713974 | Msa0450330:intron | 50.0% | |
| CGGAGGTTTGACAGTGTCAA+AGG | - | chr3_3:35714039-35714058 | None:intergenic | 50.0% | |
| GGGTGGTTGAGTAGATACCT+TGG | + | chr3_3:35714503-35714522 | Msa0450330:intron | 50.0% | |
| ! | TCCTTCTTTTCCCTTCCAGG+AGG | + | chr3_3:35715371-35715390 | Msa0450330:intron | 50.0% |
| TCCTCCTGGAAGGGAAAAGA+AGG | - | chr3_3:35715375-35715394 | None:intergenic | 50.0% | |
| ACCAAAAGGTCCTCCTGGAA+GGG | - | chr3_3:35715384-35715403 | None:intergenic | 50.0% | |
| AACCAAAAGGTCCTCCTGGA+AGG | - | chr3_3:35715385-35715404 | None:intergenic | 50.0% | |
| TGCAGTGAAGCTTAACTGGC+GGG | - | chr3_3:35715570-35715589 | None:intergenic | 50.0% | |
| CTGCAGTGAAGCTTAACTGG+CGG | - | chr3_3:35715571-35715590 | None:intergenic | 50.0% | |
| ACCCTCTCGTGGTAGAATCG+TGG | - | chr3_3:35713297-35713316 | None:intergenic | 55.0% | |
| ACGATTCTACCACGAGAGGG+TGG | + | chr3_3:35713296-35713315 | Msa0450330:CDS | 55.0% | |
| ATTCTACCACGAGAGGGTGG+TGG | + | chr3_3:35713299-35713318 | Msa0450330:CDS | 55.0% | |
| GACAGTGTCAAAGGCAAGGG+AGG | - | chr3_3:35714030-35714049 | None:intergenic | 55.0% | |
| ! | TCCCTTCCAGGAGGACCTTT+TGG | + | chr3_3:35715380-35715399 | Msa0450330:intron | 55.0% |
| ! | TCACTGCAGCATGCTTGCTG+AGG | + | chr3_3:35715582-35715601 | Msa0450330:CDS | 55.0% |
| AGTGGCAGATTTGTCTCCCG+TGG | - | chr3_3:35715665-35715684 | None:intergenic | 55.0% | |
| AGTGATCCACCACCCTCTCG+TGG | - | chr3_3:35713308-35713327 | None:intergenic | 60.0% | |
| CTTGTTGGTGCACCCGCTTG+TGG | + | chr3_3:35713387-35713406 | Msa0450330:CDS | 60.0% | |
| TAAGCGTGCCTCGGCTACTG+CGG | + | chr3_3:35715639-35715658 | Msa0450330:CDS | 60.0% | |
| TGCCTCGGCTACTGCGGCCA+CGG | + | chr3_3:35715645-35715664 | Msa0450330:CDS | 70.0% | |
| GCCTCGGCTACTGCGGCCAC+GGG | + | chr3_3:35715646-35715665 | Msa0450330:CDS | 75.0% | |
| TCCCGTGGCCGCAGTAGCCG+AGG | - | chr3_3:35715650-35715669 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 35713151 | 35716044 | 35713151 | ID=Msa0450330;Name=Msa0450330 |
| chr3_3 | mRNA | 35713151 | 35716044 | 35713151 | ID=Msa0450330-mRNA-1;Parent=Msa0450330;Name=Msa0450330-mRNA-1;_AED=0.10;_eAED=0.10;_QI=71|1|1|1|1|1|3|354|164 |
| chr3_3 | exon | 35713151 | 35713513 | 35713151 | ID=Msa0450330-mRNA-1:exon:6436;Parent=Msa0450330-mRNA-1 |
| chr3_3 | exon | 35713679 | 35713733 | 35713679 | ID=Msa0450330-mRNA-1:exon:6437;Parent=Msa0450330-mRNA-1 |
| chr3_3 | exon | 35715543 | 35716044 | 35715543 | ID=Msa0450330-mRNA-1:exon:6438;Parent=Msa0450330-mRNA-1 |
| chr3_3 | five_prime_UTR | 35713151 | 35713221 | 35713151 | ID=Msa0450330-mRNA-1:five_prime_utr;Parent=Msa0450330-mRNA-1 |
| chr3_3 | CDS | 35713222 | 35713513 | 35713222 | ID=Msa0450330-mRNA-1:cds;Parent=Msa0450330-mRNA-1 |
| chr3_3 | CDS | 35713679 | 35713733 | 35713679 | ID=Msa0450330-mRNA-1:cds;Parent=Msa0450330-mRNA-1 |
| chr3_3 | CDS | 35715543 | 35715690 | 35715543 | ID=Msa0450330-mRNA-1:cds;Parent=Msa0450330-mRNA-1 |
| chr3_3 | three_prime_UTR | 35715691 | 35716044 | 35715691 | ID=Msa0450330-mRNA-1:three_prime_utr;Parent=Msa0450330-mRNA-1 |
| Gene Sequence |
| Protein sequence |
