AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0091220


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0091220 MtrunA17_Chr1g0211281 98.258 287 5 0 34 320 1 287 0.0 567
Msa0091220 MtrunA17_Chr4g0062111 24.215 223 142 4 67 283 15 216 5.65e-13 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0091220 AT2G20920.1 62.585 294 93 6 36 320 2 287 2.59e-113 330

Find 114 sgRNAs with CRISPR-Local

Find 223 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGACTCTTTCAATTGTAAAA+TGG 0.232069 1_2:+73368453 Msa0091220:five_prime_UTR
CATAATCATCTCTCAGTTCT+TGG 0.239865 1_2:+73370915 Msa0091220:CDS
CTCGTAGCCGGTGCTGTTGT+AGG 0.250905 1_2:+73370811 Msa0091220:CDS
GTAGATATTGTCCCATTTCT+AGG 0.260172 1_2:+73370859 Msa0091220:CDS
GTTAGTGAAATCATAATTCT+TGG 0.264371 1_2:+73371149 Msa0091220:three_prime_UTR
ATGAAATGTAGTTGTTTATC+TGG 0.268008 1_2:+73371341 Msa0091220:three_prime_UTR
TTATGCTGGGGCTGATGTTC+CGG 0.280484 1_2:+73369508 Msa0091220:CDS
CTTATCTTGGCTGGTAGCTT+TGG 0.288436 1_2:+73369533 Msa0091220:CDS
CTGCGAACCGGTGGTGGTCT+TGG 0.304197 1_2:-73368686 None:intergenic
CGAAGAAGAGCCACTAAAAT+AGG 0.315687 1_2:-73369474 None:intergenic
ACAGTGAAGGCTACTGTTAT+AGG 0.321766 1_2:+73371034 Msa0091220:three_prime_UTR
AGAAATGTGAGGCTTGAAAT+TGG 0.324760 1_2:-73368589 None:intergenic
GGTCTACAAGCTGGAGTATA+TGG 0.336678 1_2:+73369434 Msa0091220:CDS
TGATGTTCCGGGACTTATCT+TGG 0.337818 1_2:+73369520 Msa0091220:CDS
GAGGAGCGTGGGACCGGTTC+AGG 0.342637 1_2:+73368772 Msa0091220:CDS
CAGTGAAGGCTACTGTTATA+GGG 0.344613 1_2:+73371035 Msa0091220:three_prime_UTR
TGAAACTGGTGCTTTCTTCA+TGG 0.383086 1_2:-73369384 None:intergenic
ATTTCACTAACAAGATCAAC+AGG 0.390058 1_2:-73371137 None:intergenic
TATGCTGGGGCTGATGTTCC+GGG 0.398811 1_2:+73369509 Msa0091220:CDS
TGCGAACCGGTGGTGGTCTT+GGG 0.401013 1_2:-73368685 None:intergenic
TAACCTGAGAAATAGTTTCT+TGG 0.402696 1_2:-73368934 None:intergenic
AACCGTGGCCGCTACGTAGA+AGG 0.413617 1_2:+73368732 Msa0091220:CDS
GGGGAGCGTATCCCTAGAAA+TGG 0.415453 1_2:-73370871 None:intergenic
TCTCTTTACTTAATCTAGAC+AGG 0.417041 1_2:+73371174 Msa0091220:three_prime_UTR
TCACCTTCCACCAGTGATCT+TGG 0.418919 1_2:+73369413 Msa0091220:CDS
AAGGCTGTTGTTATAACAAT+AGG 0.421906 1_2:+73370784 Msa0091220:CDS
TCTACAGCTGATGCGGCCAC+AGG 0.426313 1_2:-73371069 None:intergenic
GCGCGCGAACTCGCCTGAAC+CGG 0.436685 1_2:-73368785 None:intergenic
TAGGGTCAGTTGTAGAGAAC+TGG 0.448419 1_2:+73370830 Msa0091220:CDS
ACATTTCTTCAACACACAAA+TGG 0.450514 1_2:+73368604 Msa0091220:CDS
AGTTGTAGAGAACTGGTTGC+AGG 0.463677 1_2:+73370837 Msa0091220:CDS
TCTACGTAGCGGCCACGGTT+CGG 0.469629 1_2:-73368729 None:intergenic
TGACCAAGAAACTATTTCTC+AGG 0.473361 1_2:+73368931 Msa0091220:CDS
CTAAGGTAGACAGGAAAACT+TGG 0.474546 1_2:+73370949 Msa0091220:exon
GAAAACGCACTGAAGCTGTT+AGG 0.474719 1_2:+73368839 Msa0091220:CDS
GTTCCGGGACTTATCTTGGC+TGG 0.475158 1_2:+73369524 Msa0091220:CDS
TCGTAGCCGGTGCTGTTGTA+GGG 0.487487 1_2:+73370812 Msa0091220:CDS
ATCTTTCCCAAGACCACCAC+CGG 0.487703 1_2:+73368679 Msa0091220:CDS
GTCAACGAGGAGCGTGGGAC+CGG 0.488203 1_2:+73368766 Msa0091220:CDS
AGGTTAACTCAGCGGCGAGC+AGG 0.492386 1_2:+73369272 Msa0091220:CDS
CCGCATCAGCTGTAGAGAAC+TGG 0.492954 1_2:+73371076 Msa0091220:three_prime_UTR
TACTGTTATAGGGGTATAGC+TGG 0.493977 1_2:+73371045 Msa0091220:three_prime_UTR
AAGATGAACCGGCAGAGATA+CGG 0.494662 1_2:-73368661 None:intergenic
ACTTCGCTAACAACAGCAGC+AGG 0.498483 1_2:-73370892 None:intergenic
GAAGGTGACTCAATTGAAAC+TGG 0.499493 1_2:-73369398 None:intergenic
GAGATACGGTCGGACCGGAC+GGG 0.499884 1_2:-73368647 None:intergenic
GAGGCATTGAACTATTAGCC+TGG 0.508666 1_2:-73369346 None:intergenic
CATTTGCATGATCATGTCCA+AGG 0.516855 1_2:+73371007 Msa0091220:three_prime_UTR
CTAATAGTTCAATGCCTCAA+TGG 0.518261 1_2:+73369351 Msa0091220:CDS
TGTAAAACGTGTTCAGTCCC+AGG 0.519566 1_2:+73369328 Msa0091220:CDS
TAGATATTGTCCCATTTCTA+GGG 0.520925 1_2:+73370860 Msa0091220:CDS
CTCAGCACCGTTCGAGATGT+CGG 0.522136 1_2:+73368814 Msa0091220:CDS
TCTTGGTTTCGCTATACCTA+AGG 0.523449 1_2:+73370932 Msa0091220:CDS
CCTTGTATCAAAAGCAAACA+TGG 0.523516 1_2:+73371209 Msa0091220:three_prime_UTR
TGGTCTTGGGAAAGATGAAC+CGG 0.528342 1_2:-73368672 None:intergenic
ACTGAAGCTGTTAGGTGTAT+CGG 0.529175 1_2:+73368847 Msa0091220:CDS
TCGCTATACCTAAGGTAGAC+AGG 0.529570 1_2:+73370940 Msa0091220:exon
CGGTCCGACCGTATCTCTGC+CGG 0.529633 1_2:+73368653 Msa0091220:CDS
TCAGCCCCAGCATAACCTGC+AGG 0.529775 1_2:-73369500 None:intergenic
GCTGTTGTTATAACAATAGG+AGG 0.530149 1_2:+73370787 Msa0091220:CDS
GACCGGACGGGGATAGTAGC+TGG 0.530833 1_2:-73368635 None:intergenic
AACTGGTGCTTTCTTCATGG+TGG 0.533216 1_2:-73369381 None:intergenic
ACAATAGGAGGGCTCGTAGC+CGG 0.533690 1_2:+73370799 Msa0091220:CDS
CAGCCCCAGCATAACCTGCA+GGG 0.534202 1_2:-73369499 None:intergenic
AGTGATCTTGGTCTACAAGC+TGG 0.534395 1_2:+73369425 Msa0091220:CDS
CACTCGTCAACGAGGAGCGT+GGG 0.536752 1_2:+73368761 Msa0091220:CDS
CGGCAGAGATACGGTCGGAC+CGG 0.541076 1_2:-73368652 None:intergenic
TAGCCTTCACTGTCAACCCT+TGG 0.542711 1_2:-73371024 None:intergenic
ACAAGACTGCGAACCGGTGG+TGG 0.544708 1_2:-73368692 None:intergenic
GGCGCGAAGTATATCATCAA+AGG 0.548559 1_2:-73368879 None:intergenic
AGAGATACGGTCGGACCGGA+CGG 0.551833 1_2:-73368648 None:intergenic
TGGAGTATATGGTGCACTGA+TGG 0.556326 1_2:+73369445 Msa0091220:CDS
AAGATGATTATTAGCATCAA+CGG 0.557664 1_2:+73368491 Msa0091220:five_prime_UTR
AGGCATTGAACTATTAGCCT+GGG 0.559812 1_2:-73369345 None:intergenic
GGCCACGGTTCGGTGAGGAT+CGG 0.561057 1_2:-73368719 None:intergenic
CACCTTCTACGTAGCGGCCA+CGG 0.561943 1_2:-73368734 None:intergenic
GGGAGCGTATCCCTAGAAAT+GGG 0.562434 1_2:-73370870 None:intergenic
CACCAGCTACTATCCCCGTC+CGG 0.566811 1_2:+73368633 Msa0091220:CDS
AGCTTGTAGACCAAGATCAC+TGG 0.567895 1_2:-73369423 None:intergenic
AGATACGGTCGGACCGGACG+GGG 0.570930 1_2:-73368646 None:intergenic
CTACCAGCCAAGATAAGTCC+CGG 0.574753 1_2:-73369527 None:intergenic
CTACAGCTGATGCGGCCACA+GGG 0.576147 1_2:-73371068 None:intergenic
AACTGACCCTACAACAGCAC+CGG 0.576918 1_2:-73370818 None:intergenic
ATTTGCATGATCATGTCCAA+GGG 0.578012 1_2:+73371008 Msa0091220:three_prime_UTR
GGTTTAACAAGACTGCGAAC+CGG 0.586271 1_2:-73368698 None:intergenic
AGCCCCAGCATAACCTGCAG+GGG 0.587242 1_2:-73369498 None:intergenic
GGAGTATATGGTGCACTGAT+GGG 0.588659 1_2:+73369446 Msa0091220:CDS
GACGGGGATAGTAGCTGGTG+TGG 0.596353 1_2:-73368630 None:intergenic
TGTCCAAGGGTTGACAGTGA+AGG 0.597959 1_2:+73371021 Msa0091220:three_prime_UTR
TTCGCTAACAACAGCAGCAG+GGG 0.605157 1_2:-73370890 None:intergenic
ATCTTTGCAAGAAGCAACGA+TGG 0.607582 1_2:-73368909 None:intergenic
AGTGAAGGCTACTGTTATAG+GGG 0.611438 1_2:+73371036 Msa0091220:three_prime_UTR
GCACTCGTCAACGAGGAGCG+TGG 0.612531 1_2:+73368760 Msa0091220:CDS
GCCCCAGCATAACCTGCAGG+GGG 0.620500 1_2:-73369497 None:intergenic
ATGACATGTTGCTTATGCAG+AGG 0.621680 1_2:+73369252 Msa0091220:CDS
TTAATCTAGACAGGAAAACA+TGG 0.627995 1_2:+73371183 Msa0091220:three_prime_UTR
CGTGGCCGCTACGTAGAAGG+TGG 0.636433 1_2:+73368735 Msa0091220:CDS
CTTCGCTAACAACAGCAGCA+GGG 0.636870 1_2:-73370891 None:intergenic
CCAGTTCTCTACAGCTGATG+CGG 0.638669 1_2:-73371076 None:intergenic
ATGGTGGATTGCATCCATTG+AGG 0.641012 1_2:-73369365 None:intergenic
TTGTAGACCAAGATCACTGG+TGG 0.661997 1_2:-73369420 None:intergenic
AGACCAAGATCACTGGTGGA+AGG 0.664781 1_2:-73369416 None:intergenic
AACCGATCCTCACCGAACCG+TGG 0.674182 1_2:+73368717 Msa0091220:CDS
TTAACAAGACTGCGAACCGG+TGG 0.681707 1_2:-73368695 None:intergenic
CTGTTGTTATAACAATAGGA+GGG 0.684835 1_2:+73370788 Msa0091220:CDS
AAGCTGTTAGGTGTATCGGA+AGG 0.687616 1_2:+73368851 Msa0091220:CDS
TTGTGTGTTGAAGAAATGTG+AGG 0.689449 1_2:-73368600 None:intergenic
GTAGCGGCCACGGTTCGGTG+AGG 0.697717 1_2:-73368724 None:intergenic
TTATGCAGAGGTTAACTCAG+CGG 0.705557 1_2:+73369264 Msa0091220:CDS
TGCTTCCACCTTCTACGTAG+CGG 0.712698 1_2:-73368740 None:intergenic
TAGGGGTATAGCTGGCCCTG+TGG 0.725216 1_2:+73371053 Msa0091220:three_prime_UTR
GGTGGAAGCACTCGTCAACG+AGG 0.726269 1_2:+73368753 Msa0091220:CDS
TGAACCGGCAGAGATACGGT+CGG 0.737243 1_2:-73368657 None:intergenic
TTTCACTAACAAGATCAACA+GGG 0.765605 1_2:-73371136 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ACTTTTGATATTAAAAGTTT+TGG + chr1_2:73370194-73370213 Msa0091220:intron 15.0%
!! AATAAAAGTAAGCATTTAGA+TGG + chr1_2:73369686-73369705 Msa0091220:intron 20.0%
!! ATTATGAATGTCTACAAAAT+TGG - chr1_2:73370054-73370073 None:intergenic 20.0%
!!! TTTTGTAGACATTCATAATA+AGG + chr1_2:73370055-73370074 Msa0091220:intron 20.0%
!!! ACTTTTAATATCAAAAGTCT+GGG - chr1_2:73370192-73370211 None:intergenic 20.0%
!!! AACTTTTAATATCAAAAGTC+TGG - chr1_2:73370193-73370212 None:intergenic 20.0%
!! AAGTTGTTTATCTTAACAAA+TGG + chr1_2:73370327-73370346 Msa0091220:intron 20.0%
!!! TTTAACTTGAAGATAGAATT+TGG + chr1_2:73370537-73370556 Msa0091220:intron 20.0%
!!! TTAACTTGAAGATAGAATTT+GGG + chr1_2:73370538-73370557 Msa0091220:intron 20.0%
!! AAGCTAAAAATCAATTCTAA+AGG - chr1_2:73370571-73370590 None:intergenic 20.0%
! AAGATGATTATTAGCATCAA+CGG + chr1_2:73368491-73368510 Msa0091220:five_prime_UTR 25.0%
!! CTATTTCGATCTTTTCTTTT+TGG + chr1_2:73368530-73368549 Msa0091220:CDS 25.0%
! GCTTATATTATAGCTTATAC+AGG - chr1_2:73369043-73369062 None:intergenic 25.0%
! TAATTCTATACACCTATTGA+TGG + chr1_2:73369197-73369216 Msa0091220:intron 25.0%
! ACCAAAAAGAATGTTAAGTT+AGG + chr1_2:73369575-73369594 Msa0091220:CDS 25.0%
!! ACCTAACTTAACATTCTTTT+TGG - chr1_2:73369579-73369598 None:intergenic 25.0%
! AAAGAATGTTAAGTTAGGTA+AGG + chr1_2:73369580-73369599 Msa0091220:intron 25.0%
! ACATTGATATTGTAATGCAA+TGG + chr1_2:73369616-73369635 Msa0091220:intron 25.0%
!! TAGAACTTTTCTTTCAACAA+AGG - chr1_2:73369777-73369796 None:intergenic 25.0%
! AATGTACAGTTTCAATAAGA+GGG - chr1_2:73369927-73369946 None:intergenic 25.0%
! AAATGTACAGTTTCAATAAG+AGG - chr1_2:73369928-73369947 None:intergenic 25.0%
! AGAAATGAAGTCTATTCAAT+AGG - chr1_2:73370161-73370180 None:intergenic 25.0%
!!! AGGGTTTTATTTACCTAATA+TGG + chr1_2:73370268-73370287 Msa0091220:intron 25.0%
!!! GAGATTGTTTCTGTATAAAA+TGG + chr1_2:73370290-73370309 Msa0091220:intron 25.0%
! TAGTTTAAGAAAGAGGTAAA+CGG - chr1_2:73370399-73370418 None:intergenic 25.0%
! CAAAATCAATTATACACCTT+TGG - chr1_2:73370468-73370487 None:intergenic 25.0%
!!! CAAAGGTGTATAATTGATTT+TGG + chr1_2:73370466-73370485 Msa0091220:intron 25.0%
!!! ATAATTGATTTTGGCATGTT+TGG + chr1_2:73370475-73370494 Msa0091220:intron 25.0%
!! CTTCAAGTTAAAATAAATCC+TGG - chr1_2:73370529-73370548 None:intergenic 25.0%
! TAACTTGAAGATAGAATTTG+GGG + chr1_2:73370539-73370558 Msa0091220:intron 25.0%
! GTTAGTGAAATCATAATTCT+TGG + chr1_2:73371149-73371168 Msa0091220:three_prime_UTR 25.0%
! ATGAAATGTAGTTGTTTATC+TGG + chr1_2:73371341-73371360 Msa0091220:three_prime_UTR 25.0%
CGACTCTTTCAATTGTAAAA+TGG + chr1_2:73368453-73368472 Msa0091220:five_prime_UTR 30.0%
ACATTTCTTCAACACACAAA+TGG + chr1_2:73368604-73368623 Msa0091220:CDS 30.0%
TAACCTGAGAAATAGTTTCT+TGG - chr1_2:73368937-73368956 None:intergenic 30.0%
CAAATCAACAACAAGTAAAG+TGG - chr1_2:73368962-73368981 None:intergenic 30.0%
TACATGAATTTCAAGACCAT+GGG - chr1_2:73369107-73369126 None:intergenic 30.0%
! TGGAATTTCTGTGCATTTTT+AGG + chr1_2:73369217-73369236 Msa0091220:intron 30.0%
!! TGGAATTTTTGTTTCATGAG+TGG + chr1_2:73369636-73369655 Msa0091220:intron 30.0%
!! ATTCGTATTGACTTGTATCA+TGG + chr1_2:73369663-73369682 Msa0091220:intron 30.0%
TCAGTTTCACTAAAGTTATG+TGG + chr1_2:73369831-73369850 Msa0091220:intron 30.0%
! TCTAATGGATCTAATTCATG+TGG - chr1_2:73369860-73369879 None:intergenic 30.0%
! CCTATTGGTTAAAGTTCTAA+TGG - chr1_2:73369875-73369894 None:intergenic 30.0%
CCATTAGAACTTTAACCAAT+AGG + chr1_2:73369872-73369891 Msa0091220:intron 30.0%
ATGTACAGTTTCAATAAGAG+GGG - chr1_2:73369926-73369945 None:intergenic 30.0%
CTTATTGTTTCGACAAAGAA+TGG - chr1_2:73370133-73370152 None:intergenic 30.0%
CATTCTTTGTCGAAACAATA+AGG + chr1_2:73370131-73370150 Msa0091220:intron 30.0%
ATGAAGTCTATTCAATAGGT+TGG - chr1_2:73370157-73370176 None:intergenic 30.0%
ACAGAAACAATCTCCATATT+AGG - chr1_2:73370284-73370303 None:intergenic 30.0%
CTGAGAATAGTTTAAGAAAG+AGG - chr1_2:73370406-73370425 None:intergenic 30.0%
CAAGTTAAAATAAATCCTGG+AGG - chr1_2:73370526-73370545 None:intergenic 30.0%
AAAGCTATTCAGATGAAAGT+AGG - chr1_2:73370610-73370629 None:intergenic 30.0%
CCAAAAGGATTAAGTGTATT+TGG - chr1_2:73370694-73370713 None:intergenic 30.0%
! CCAAATACACTTAATCCTTT+TGG + chr1_2:73370691-73370710 Msa0091220:intron 30.0%
AAATGCTATGCTAATCCAAA+AGG - chr1_2:73370709-73370728 None:intergenic 30.0%
! ATAGAAAAGGGAAGTGTAAA+AGG - chr1_2:73370754-73370773 None:intergenic 30.0%
AAGGCTGTTGTTATAACAAT+AGG + chr1_2:73370784-73370803 Msa0091220:CDS 30.0%
CTGTTGTTATAACAATAGGA+GGG + chr1_2:73370788-73370807 Msa0091220:CDS 30.0%
TAGATATTGTCCCATTTCTA+GGG + chr1_2:73370860-73370879 Msa0091220:CDS 30.0%
! TGTAGAAATTGTCCCATTTT+TGG + chr1_2:73371103-73371122 Msa0091220:three_prime_UTR 30.0%
!! GTAGAAATTGTCCCATTTTT+GGG + chr1_2:73371104-73371123 Msa0091220:three_prime_UTR 30.0%
TTTCACTAACAAGATCAACA+GGG - chr1_2:73371139-73371158 None:intergenic 30.0%
ATTTCACTAACAAGATCAAC+AGG - chr1_2:73371140-73371159 None:intergenic 30.0%
TCTCTTTACTTAATCTAGAC+AGG + chr1_2:73371174-73371193 Msa0091220:three_prime_UTR 30.0%
TTAATCTAGACAGGAAAACA+TGG + chr1_2:73371183-73371202 Msa0091220:three_prime_UTR 30.0%
! ATCATACCTCAAGCATTTTT+AGG + chr1_2:73371284-73371303 Msa0091220:three_prime_UTR 30.0%
TTACATCCTAAAAATGCTTG+AGG - chr1_2:73371293-73371312 None:intergenic 30.0%
! AAGATGCAGATTTTATGTTC+AGG + chr1_2:73371397-73371416 Msa0091220:three_prime_UTR 30.0%
! AGATGCAGATTTTATGTTCA+GGG + chr1_2:73371398-73371417 Msa0091220:three_prime_UTR 30.0%
AGAAATGTGAGGCTTGAAAT+TGG - chr1_2:73368592-73368611 None:intergenic 35.0%
TTGTGTGTTGAAGAAATGTG+AGG - chr1_2:73368603-73368622 None:intergenic 35.0%
! TGACCAAGAAACTATTTCTC+AGG + chr1_2:73368931-73368950 Msa0091220:CDS 35.0%
GTACATGAATTTCAAGACCA+TGG - chr1_2:73369108-73369127 None:intergenic 35.0%
! ACTGAAATTGTGAGGTATTC+AGG - chr1_2:73369145-73369164 None:intergenic 35.0%
AACTAGAGACTGAAATTGTG+AGG - chr1_2:73369153-73369172 None:intergenic 35.0%
TGCACAGAAATTCCATCAAT+AGG - chr1_2:73369212-73369231 None:intergenic 35.0%
CTAATAGTTCAATGCCTCAA+TGG + chr1_2:73369351-73369370 Msa0091220:CDS 35.0%
!! ATGGGTTTGACCTATTTTAG+TGG + chr1_2:73369464-73369483 Msa0091220:CDS 35.0%
!! CTTTTTGGTCATGAAGTACA+AGG - chr1_2:73369564-73369583 None:intergenic 35.0%
AAGCATTTAGATGGCCATAA+TGG + chr1_2:73369695-73369714 Msa0091220:intron 35.0%
AGCATTTAGATGGCCATAAT+GGG + chr1_2:73369696-73369715 Msa0091220:intron 35.0%
TTCAACAAAGGCAAACATGA+AGG - chr1_2:73369765-73369784 None:intergenic 35.0%
CTTTAACCAATAGGAGATAG+TGG + chr1_2:73369881-73369900 Msa0091220:intron 35.0%
TTCTAACCACTATCTCCTAT+TGG - chr1_2:73369890-73369909 None:intergenic 35.0%
TTCTTATACTGCTAATCTGC+TGG + chr1_2:73370219-73370238 Msa0091220:intron 35.0%
! ACAAATGGTACTTCTAGTTG+TGG + chr1_2:73370342-73370361 Msa0091220:intron 35.0%
! CAAATGGTACTTCTAGTTGT+GGG + chr1_2:73370343-73370362 Msa0091220:intron 35.0%
!!! TACACCTTTGGAGTCAATTT+TGG - chr1_2:73370456-73370475 None:intergenic 35.0%
! TTGGCATGTTTGGATGTTTT+CGG + chr1_2:73370485-73370504 Msa0091220:intron 35.0%
!! ATAGAATTGATTTTGCCTCC+AGG + chr1_2:73370508-73370527 Msa0091220:intron 35.0%
!! ATTAAGTGTATTTGGCTCTG+CGG - chr1_2:73370686-73370705 None:intergenic 35.0%
!!! TTCCCTTTTCTATTTCTGCA+GGG + chr1_2:73370761-73370780 Msa0091220:intron 35.0%
TTCCCTGCAGAAATAGAAAA+GGG - chr1_2:73370766-73370785 None:intergenic 35.0%
GCTGTTGTTATAACAATAGG+AGG + chr1_2:73370787-73370806 Msa0091220:CDS 35.0%
GTAGATATTGTCCCATTTCT+AGG + chr1_2:73370859-73370878 Msa0091220:CDS 35.0%
CATAATCATCTCTCAGTTCT+TGG + chr1_2:73370915-73370934 Msa0091220:CDS 35.0%
ATTTGCATGATCATGTCCAA+GGG + chr1_2:73371008-73371027 Msa0091220:three_prime_UTR 35.0%
!! CCATGTTTGCTTTTGATACA+AGG - chr1_2:73371212-73371231 None:intergenic 35.0%
CCTTGTATCAAAAGCAAACA+TGG + chr1_2:73371209-73371228 Msa0091220:three_prime_UTR 35.0%
! TTTTCAACCGACATCTCGAA+CGG - chr1_2:73368824-73368843 None:intergenic 40.0%
ACTGAAGCTGTTAGGTGTAT+CGG + chr1_2:73368847-73368866 Msa0091220:CDS 40.0%
! AGAAGCAACGATGGAGTTTT+TGG - chr1_2:73368903-73368922 None:intergenic 40.0%
ATCTTTGCAAGAAGCAACGA+TGG - chr1_2:73368912-73368931 None:intergenic 40.0%
!!! ATGCTTGAGTTTTTTGCCCA+TGG + chr1_2:73369088-73369107 Msa0091220:intron 40.0%
! TGAGGTATTCAGGACATCAA+GGG - chr1_2:73369135-73369154 None:intergenic 40.0%
!!! TTCTGTGCATTTTTAGGTCG+AGG + chr1_2:73369223-73369242 Msa0091220:intron 40.0%
! ATGACATGTTGCTTATGCAG+AGG + chr1_2:73369252-73369271 Msa0091220:CDS 40.0%
TTATGCAGAGGTTAACTCAG+CGG + chr1_2:73369264-73369283 Msa0091220:CDS 40.0%
!! AGGCATTGAACTATTAGCCT+GGG - chr1_2:73369348-73369367 None:intergenic 40.0%
TGAAACTGGTGCTTTCTTCA+TGG - chr1_2:73369387-73369406 None:intergenic 40.0%
GAAGGTGACTCAATTGAAAC+TGG - chr1_2:73369401-73369420 None:intergenic 40.0%
CGAAGAAGAGCCACTAAAAT+AGG - chr1_2:73369477-73369496 None:intergenic 40.0%
! ATTTAGATGGCCATAATGGG+TGG + chr1_2:73369699-73369718 Msa0091220:intron 40.0%
!! TTTAGATGGCCATAATGGGT+GGG + chr1_2:73369700-73369719 Msa0091220:intron 40.0%
TGAAGACACAAAGCAATGAG+TGG + chr1_2:73369963-73369982 Msa0091220:intron 40.0%
ATGAGTGGTATGAGTATGCA+AGG + chr1_2:73369978-73369997 Msa0091220:intron 40.0%
AATCTGCTGGATATTACTGC+TGG + chr1_2:73370232-73370251 Msa0091220:intron 40.0%
! AGAGCCAAAATTGACTCCAA+AGG + chr1_2:73370449-73370468 Msa0091220:intron 40.0%
! GAAAAGGGAAGTGTAAAAGG+AGG - chr1_2:73370751-73370770 None:intergenic 40.0%
!!! CTTCCCTTTTCTATTTCTGC+AGG + chr1_2:73370760-73370779 Msa0091220:intron 40.0%
CTTCCCTGCAGAAATAGAAA+AGG - chr1_2:73370767-73370786 None:intergenic 40.0%
!!! CTTTTCTATTTCTGCAGGGA+AGG + chr1_2:73370765-73370784 Msa0091220:intron 40.0%
TCTTGGTTTCGCTATACCTA+AGG + chr1_2:73370932-73370951 Msa0091220:CDS 40.0%
! CAAGTTTTCCTGTCTACCTT+AGG - chr1_2:73370951-73370970 None:intergenic 40.0%
CTAAGGTAGACAGGAAAACT+TGG + chr1_2:73370949-73370968 Msa0091220:exon 40.0%
CATTTGCATGATCATGTCCA+AGG + chr1_2:73371007-73371026 Msa0091220:three_prime_UTR 40.0%
ACAGTGAAGGCTACTGTTAT+AGG + chr1_2:73371034-73371053 Msa0091220:three_prime_UTR 40.0%
CAGTGAAGGCTACTGTTATA+GGG + chr1_2:73371035-73371054 Msa0091220:three_prime_UTR 40.0%
AGTGAAGGCTACTGTTATAG+GGG + chr1_2:73371036-73371055 Msa0091220:three_prime_UTR 40.0%
! TACTGTTATAGGGGTATAGC+TGG + chr1_2:73371045-73371064 Msa0091220:three_prime_UTR 40.0%
!! ATTGTCCCATTTTTGGGCAT+AGG + chr1_2:73371110-73371129 Msa0091220:three_prime_UTR 40.0%
GGAATCCTATGCCCAAAAAT+GGG - chr1_2:73371118-73371137 None:intergenic 40.0%
AAGATGAACCGGCAGAGATA+CGG - chr1_2:73368664-73368683 None:intergenic 45.0%
! TGGTCTTGGGAAAGATGAAC+CGG - chr1_2:73368675-73368694 None:intergenic 45.0%
GGTTTAACAAGACTGCGAAC+CGG - chr1_2:73368701-73368720 None:intergenic 45.0%
GAAAACGCACTGAAGCTGTT+AGG + chr1_2:73368839-73368858 Msa0091220:CDS 45.0%
AAGCTGTTAGGTGTATCGGA+AGG + chr1_2:73368851-73368870 Msa0091220:CDS 45.0%
GGCGCGAAGTATATCATCAA+AGG - chr1_2:73368882-73368901 None:intergenic 45.0%
! GAGGTATTCAGGACATCAAG+GGG - chr1_2:73369134-73369153 None:intergenic 45.0%
! GTGAGGTATTCAGGACATCA+AGG - chr1_2:73369136-73369155 None:intergenic 45.0%
TGTAAAACGTGTTCAGTCCC+AGG + chr1_2:73369328-73369347 Msa0091220:CDS 45.0%
!! GAGGCATTGAACTATTAGCC+TGG - chr1_2:73369349-73369368 None:intergenic 45.0%
!! ATGGTGGATTGCATCCATTG+AGG - chr1_2:73369368-73369387 None:intergenic 45.0%
AACTGGTGCTTTCTTCATGG+TGG - chr1_2:73369384-73369403 None:intergenic 45.0%
TTGTAGACCAAGATCACTGG+TGG - chr1_2:73369423-73369442 None:intergenic 45.0%
AGCTTGTAGACCAAGATCAC+TGG - chr1_2:73369426-73369445 None:intergenic 45.0%
AGTGATCTTGGTCTACAAGC+TGG + chr1_2:73369425-73369444 Msa0091220:CDS 45.0%
GGTCTACAAGCTGGAGTATA+TGG + chr1_2:73369434-73369453 Msa0091220:CDS 45.0%
TGGAGTATATGGTGCACTGA+TGG + chr1_2:73369445-73369464 Msa0091220:CDS 45.0%
! GGAGTATATGGTGCACTGAT+GGG + chr1_2:73369446-73369465 Msa0091220:CDS 45.0%
TGATGTTCCGGGACTTATCT+TGG + chr1_2:73369520-73369539 Msa0091220:CDS 45.0%
CTTATCTTGGCTGGTAGCTT+TGG + chr1_2:73369533-73369552 Msa0091220:CDS 45.0%
TTGGTGCACTGTATGATGCA+AGG - chr1_2:73370035-73370054 None:intergenic 45.0%
!! TGCTGGTGTCTTTGAAGTGA+GGG + chr1_2:73370249-73370268 Msa0091220:intron 45.0%
! ATGGTACTTCTAGTTGTGGG+TGG + chr1_2:73370346-73370365 Msa0091220:intron 45.0%
TAGGGTCAGTTGTAGAGAAC+TGG + chr1_2:73370830-73370849 Msa0091220:CDS 45.0%
AGTTGTAGAGAACTGGTTGC+AGG + chr1_2:73370837-73370856 Msa0091220:CDS 45.0%
TCGCTATACCTAAGGTAGAC+AGG + chr1_2:73370940-73370959 Msa0091220:exon 45.0%
GGGAATCCTATGCCCAAAAA+TGG - chr1_2:73371119-73371138 None:intergenic 45.0%
! GCAGATTTTATGTTCAGGGC+TGG + chr1_2:73371402-73371421 Msa0091220:three_prime_UTR 45.0%
ATCTTTCCCAAGACCACCAC+CGG + chr1_2:73368679-73368698 Msa0091220:CDS 50.0%
TTAACAAGACTGCGAACCGG+TGG - chr1_2:73368698-73368717 None:intergenic 50.0%
TGCTTCCACCTTCTACGTAG+CGG - chr1_2:73368743-73368762 None:intergenic 50.0%
TCACCTTCCACCAGTGATCT+TGG + chr1_2:73369413-73369432 Msa0091220:CDS 50.0%
AGACCAAGATCACTGGTGGA+AGG - chr1_2:73369419-73369438 None:intergenic 50.0%
TTATGCTGGGGCTGATGTTC+CGG + chr1_2:73369508-73369527 Msa0091220:CDS 50.0%
CTACCAGCCAAGATAAGTCC+CGG - chr1_2:73369530-73369549 None:intergenic 50.0%
TCCTACTCTCCCACCCATTA+TGG - chr1_2:73369712-73369731 None:intergenic 50.0%
!! CTGCTGGTGTCTTTGAAGTG+AGG + chr1_2:73370248-73370267 Msa0091220:intron 50.0%
AACTGACCCTACAACAGCAC+CGG - chr1_2:73370821-73370840 None:intergenic 50.0%
! GGGAGCGTATCCCTAGAAAT+GGG - chr1_2:73370873-73370892 None:intergenic 50.0%
TTCGCTAACAACAGCAGCAG+GGG - chr1_2:73370893-73370912 None:intergenic 50.0%
CTTCGCTAACAACAGCAGCA+GGG - chr1_2:73370894-73370913 None:intergenic 50.0%
ACTTCGCTAACAACAGCAGC+AGG - chr1_2:73370895-73370914 None:intergenic 50.0%
TGTCCAAGGGTTGACAGTGA+AGG + chr1_2:73371021-73371040 Msa0091220:three_prime_UTR 50.0%
TAGCCTTCACTGTCAACCCT+TGG - chr1_2:73371027-73371046 None:intergenic 50.0%
CCAGTTCTCTACAGCTGATG+CGG - chr1_2:73371079-73371098 None:intergenic 50.0%
TGAACCGGCAGAGATACGGT+CGG - chr1_2:73368660-73368679 None:intergenic 55.0%
CTCAGCACCGTTCGAGATGT+CGG + chr1_2:73368814-73368833 Msa0091220:CDS 55.0%
TATGCTGGGGCTGATGTTCC+GGG + chr1_2:73369509-73369528 Msa0091220:CDS 55.0%
GTTCCGGGACTTATCTTGGC+TGG + chr1_2:73369524-73369543 Msa0091220:CDS 55.0%
!! GCCATAATGGGTGGGAGAGT+AGG + chr1_2:73369708-73369727 Msa0091220:intron 55.0%
ACAATAGGAGGGCTCGTAGC+CGG + chr1_2:73370799-73370818 Msa0091220:CDS 55.0%
!! TCGTAGCCGGTGCTGTTGTA+GGG + chr1_2:73370812-73370831 Msa0091220:CDS 55.0%
! GGGGAGCGTATCCCTAGAAA+TGG - chr1_2:73370874-73370893 None:intergenic 55.0%
CCGCATCAGCTGTAGAGAAC+TGG + chr1_2:73371076-73371095 Msa0091220:three_prime_UTR 55.0%
GACGGGGATAGTAGCTGGTG+TGG - chr1_2:73368633-73368652 None:intergenic 60.0%
CACCAGCTACTATCCCCGTC+CGG + chr1_2:73368633-73368652 Msa0091220:CDS 60.0%
AGAGATACGGTCGGACCGGA+CGG - chr1_2:73368651-73368670 None:intergenic 60.0%
! TGCGAACCGGTGGTGGTCTT+GGG - chr1_2:73368688-73368707 None:intergenic 60.0%
ACAAGACTGCGAACCGGTGG+TGG - chr1_2:73368695-73368714 None:intergenic 60.0%
AACCGATCCTCACCGAACCG+TGG + chr1_2:73368717-73368736 Msa0091220:CDS 60.0%
TCTACGTAGCGGCCACGGTT+CGG - chr1_2:73368732-73368751 None:intergenic 60.0%
AACCGTGGCCGCTACGTAGA+AGG + chr1_2:73368732-73368751 Msa0091220:CDS 60.0%
CACCTTCTACGTAGCGGCCA+CGG - chr1_2:73368737-73368756 None:intergenic 60.0%
!! GGTGGAAGCACTCGTCAACG+AGG + chr1_2:73368753-73368772 Msa0091220:CDS 60.0%
! CACTCGTCAACGAGGAGCGT+GGG + chr1_2:73368761-73368780 Msa0091220:CDS 60.0%
AGGTTAACTCAGCGGCGAGC+AGG + chr1_2:73369272-73369291 Msa0091220:CDS 60.0%
AGCCCCAGCATAACCTGCAG+GGG - chr1_2:73369501-73369520 None:intergenic 60.0%
CAGCCCCAGCATAACCTGCA+GGG - chr1_2:73369502-73369521 None:intergenic 60.0%
TCAGCCCCAGCATAACCTGC+AGG - chr1_2:73369503-73369522 None:intergenic 60.0%
!! CTCGTAGCCGGTGCTGTTGT+AGG + chr1_2:73370811-73370830 Msa0091220:CDS 60.0%
! TAGGGGTATAGCTGGCCCTG+TGG + chr1_2:73371053-73371072 Msa0091220:three_prime_UTR 60.0%
CTACAGCTGATGCGGCCACA+GGG - chr1_2:73371071-73371090 None:intergenic 60.0%
TCTACAGCTGATGCGGCCAC+AGG - chr1_2:73371072-73371091 None:intergenic 60.0%
GACCGGACGGGGATAGTAGC+TGG - chr1_2:73368638-73368657 None:intergenic 65.0%
AGATACGGTCGGACCGGACG+GGG - chr1_2:73368649-73368668 None:intergenic 65.0%
GAGATACGGTCGGACCGGAC+GGG - chr1_2:73368650-73368669 None:intergenic 65.0%
CGGCAGAGATACGGTCGGAC+CGG - chr1_2:73368655-73368674 None:intergenic 65.0%
CGGTCCGACCGTATCTCTGC+CGG + chr1_2:73368653-73368672 Msa0091220:CDS 65.0%
! CTGCGAACCGGTGGTGGTCT+TGG - chr1_2:73368689-73368708 None:intergenic 65.0%
!! GGCCACGGTTCGGTGAGGAT+CGG - chr1_2:73368722-73368741 None:intergenic 65.0%
CGTGGCCGCTACGTAGAAGG+TGG + chr1_2:73368735-73368754 Msa0091220:CDS 65.0%
GCACTCGTCAACGAGGAGCG+TGG + chr1_2:73368760-73368779 Msa0091220:CDS 65.0%
! GTCAACGAGGAGCGTGGGAC+CGG + chr1_2:73368766-73368785 Msa0091220:CDS 65.0%
TCGCCCCCTGCAGGTTATGC+TGG + chr1_2:73369494-73369513 Msa0091220:CDS 65.0%
CGCCCCCTGCAGGTTATGCT+GGG + chr1_2:73369495-73369514 Msa0091220:CDS 65.0%
GCCCCCTGCAGGTTATGCTG+GGG + chr1_2:73369496-73369515 Msa0091220:CDS 65.0%
GCCCCAGCATAACCTGCAGG+GGG - chr1_2:73369500-73369519 None:intergenic 65.0%
!! GTAGCGGCCACGGTTCGGTG+AGG - chr1_2:73368727-73368746 None:intergenic 70.0%
! GAGGAGCGTGGGACCGGTTC+AGG + chr1_2:73368772-73368791 Msa0091220:CDS 70.0%
GCGCGCGAACTCGCCTGAAC+CGG - chr1_2:73368788-73368807 None:intergenic 70.0%
GGCTCTTCTTCGCCCCCTGC+AGG + chr1_2:73369485-73369504 Msa0091220:CDS 70.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 73368428 73371432 73368428 ID=Msa0091220;Name=Msa0091220
chr1_2 mRNA 73368428 73371432 73368428 ID=Msa0091220-mRNA-1;Parent=Msa0091220;Name=Msa0091220-mRNA-1;_AED=0.01;_eAED=0.01;_QI=96|1|1|1|1|1|3|475|320
chr1_2 exon 73368428 73368952 73368428 ID=Msa0091220-mRNA-1:exon:25572;Parent=Msa0091220-mRNA-1
chr1_2 exon 73369239 73369596 73369239 ID=Msa0091220-mRNA-1:exon:25573;Parent=Msa0091220-mRNA-1
chr1_2 exon 73370782 73371432 73370782 ID=Msa0091220-mRNA-1:exon:25574;Parent=Msa0091220-mRNA-1
chr1_2 five_prime_UTR 73368428 73368523 73368428 ID=Msa0091220-mRNA-1:five_prime_utr;Parent=Msa0091220-mRNA-1
chr1_2 CDS 73368524 73368952 73368524 ID=Msa0091220-mRNA-1:cds;Parent=Msa0091220-mRNA-1
chr1_2 CDS 73369239 73369596 73369239 ID=Msa0091220-mRNA-1:cds;Parent=Msa0091220-mRNA-1
chr1_2 CDS 73370782 73370957 73370782 ID=Msa0091220-mRNA-1:cds;Parent=Msa0091220-mRNA-1
chr1_2 three_prime_UTR 73370958 73371432 73370958 ID=Msa0091220-mRNA-1:three_prime_utr;Parent=Msa0091220-mRNA-1
Gene Sequence

>Msa0091220

ATGAAACTATTTCGATCTTTTCTTTTTGGCTTTATTTTATTTTCTTTTCATTTTTATTCGTCACTCCAATTTCAAGCCTCACATTTCTTCAACACACAAATGGCTGCCACACCAGCTACTATCCCCGTCCGGTCCGACCGTATCTCTGCCGGTTCATCTTTCCCAAGACCACCACCGGTTCGCAGTCTTGTTAAACCGATCCTCACCGAACCGTGGCCGCTACGTAGAAGGTGGAAGCACTCGTCAACGAGGAGCGTGGGACCGGTTCAGGCGAGTTCGCGCGCAGATGACTCAGCACCGTTCGAGATGTCGGTTGAAAACGCACTGAAGCTGTTAGGTGTATCGGAAGGTGCTTCCTTTGATGATATACTTCGCGCCAAAAACTCCATCGTTGCTTCTTGCAAAGATGACCAAGAAACTATTTCTCAGGTCGAGGCTGCATATGACATGTTGCTTATGCAGAGGTTAACTCAGCGGCGAGCAGGAAAAGTAGTGAGCAGCAGTGTTCGTTATGCTGATGTAAAACGTGTTCAGTCCCAGGCTAATAGTTCAATGCCTCAATGGATGCAATCCACCATGAAGAAAGCACCAGTTTCAATTGAGTCACCTTCCACCAGTGATCTTGGTCTACAAGCTGGAGTATATGGTGCACTGATGGGTTTGACCTATTTTAGTGGCTCTTCTTCGCCCCCTGCAGGTTATGCTGGGGCTGATGTTCCGGGACTTATCTTGGCTGGTAGCTTTGGAGCTTCCTTGTACTTCATGACCAAAAAGAATGTTAAGTTAGGGAAGGCTGTTGTTATAACAATAGGAGGGCTCGTAGCCGGTGCTGTTGTAGGGTCAGTTGTAGAGAACTGGTTGCAGGTAGATATTGTCCCATTTCTAGGGATACGCTCCCCTGCTGCTGTTGTTAGCGAAGTCATAATCATCTCTCAGTTCTTGGTTTCGCTATACCTAAGGTAG

Protein sequence

>Msa0091220

MKLFRSFLFGFILFSFHFYSSLQFQASHFFNTQMAATPATIPVRSDRISAGSSFPRPPPVRSLVKPILTEPWPLRRRWKHSSTRSVGPVQASSRADDSAPFEMSVENALKLLGVSEGASFDDILRAKNSIVASCKDDQETISQVEAAYDMLLMQRLTQRRAGKVVSSSVRYADVKRVQSQANSSMPQWMQSTMKKAPVSIESPSTSDLGLQAGVYGALMGLTYFSGSSSPPAGYAGADVPGLILAGSFGASLYFMTKKNVKLGKAVVITIGGLVAGAVVGSVVENWLQVDIVPFLGIRSPAAVVSEVIIISQFLVSLYLR*