AlfalfaGEDB | Msa0091220

M. sativa cultivar zhongmu-4 / Msa0091220

KEGG: -
GO: -
PFAM: PF11833.11

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0091220	XP_013470344.1	98.258	287	5	0	34	320	1	287	0.0	567

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0091220	B7FHS6	98.258	287	5	0	34	320	1	287	0.0	567

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000610	Msa0091220	0.811854	5.685908e-51	-8.615850e-47
Msa0002110	Msa0091220	0.891518	3.692654e-74	-8.615850e-47
Msa0003340	Msa0091220	0.863811	1.906629e-64	-8.615850e-47
Msa0003840	Msa0091220	-0.800454	1.430491e-48	-8.615850e-47
Msa0004180	Msa0091220	0.810816	9.549095e-51	-8.615850e-47
Msa0005500	Msa0091220	0.811758	5.965331e-51	-8.615850e-47
Msa0006080	Msa0091220	-0.818842	1.587183e-52	-8.615850e-47
Msa0007810	Msa0091220	0.892687	1.261765e-74	-8.615850e-47
Msa0011060	Msa0091220	0.882073	1.413850e-70	-8.615850e-47
Msa0011100	Msa0091220	0.879201	1.511267e-69	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0091220	MtrunA17_Chr1g0211281	98.258	287	5	0	34	320	1	287	0.0	567
Msa0091220	MtrunA17_Chr4g0062111	24.215	223	142	4	67	283	15	216	5.65e-13	67.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0091220	AT2G20920.1	62.585	294	93	6	36	320	2	287	2.59e-113	330

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Find 114 sgRNAs with CRISPR-Local

Find 223 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACCGATCCTCACCGAACCG+TGG	0.674182	1_2:+73368717	Msa0091220:CDS
AACCGTGGCCGCTACGTAGA+AGG	0.413617	1_2:+73368732	Msa0091220:CDS
AACTGACCCTACAACAGCAC+CGG	0.576918	1_2:-73370818	None:intergenic
AACTGGTGCTTTCTTCATGG+TGG	0.533216	1_2:-73369381	None:intergenic
AAGATGAACCGGCAGAGATA+CGG	0.494662	1_2:-73368661	None:intergenic
AAGATGATTATTAGCATCAA+CGG	0.557664	1_2:+73368491	Msa0091220:five_prime_UTR
AAGCTGTTAGGTGTATCGGA+AGG	0.687616	1_2:+73368851	Msa0091220:CDS
AAGGCTGTTGTTATAACAAT+AGG	0.421906	1_2:+73370784	Msa0091220:CDS
ACAAGACTGCGAACCGGTGG+TGG	0.544708	1_2:-73368692	None:intergenic
ACAATAGGAGGGCTCGTAGC+CGG	0.533690	1_2:+73370799	Msa0091220:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CGACTCTTTCAATTGTAAAA+TGG	+	chr1_2:73368453-73368472	Msa0091220:five_prime_UTR	30.0%
ACATTTCTTCAACACACAAA+TGG	+	chr1_2:73368604-73368623	Msa0091220:CDS	30.0%
TAACCTGAGAAATAGTTTCT+TGG	-	chr1_2:73368937-73368956	None:intergenic	30.0%
CAAATCAACAACAAGTAAAG+TGG	-	chr1_2:73368962-73368981	None:intergenic	30.0%
TACATGAATTTCAAGACCAT+GGG	-	chr1_2:73369107-73369126	None:intergenic	30.0%
TCAGTTTCACTAAAGTTATG+TGG	+	chr1_2:73369831-73369850	Msa0091220:intron	30.0%
CCATTAGAACTTTAACCAAT+AGG	+	chr1_2:73369872-73369891	Msa0091220:intron	30.0%
ATGTACAGTTTCAATAAGAG+GGG	-	chr1_2:73369926-73369945	None:intergenic	30.0%
CTTATTGTTTCGACAAAGAA+TGG	-	chr1_2:73370133-73370152	None:intergenic	30.0%
CATTCTTTGTCGAAACAATA+AGG	+	chr1_2:73370131-73370150	Msa0091220:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_2	gene	73368428	73371432	73368428	ID=Msa0091220;Name=Msa0091220
chr1_2	mRNA	73368428	73371432	73368428	ID=Msa0091220-mRNA-1;Parent=Msa0091220;Name=Msa0091220-mRNA-1;_AED=0.01;_eAED=0.01;_QI=96\|1\|1\|1\|1\|1\|3\|475\|320
chr1_2	exon	73368428	73368952	73368428	ID=Msa0091220-mRNA-1:exon:25572;Parent=Msa0091220-mRNA-1
chr1_2	exon	73369239	73369596	73369239	ID=Msa0091220-mRNA-1:exon:25573;Parent=Msa0091220-mRNA-1
chr1_2	exon	73370782	73371432	73370782	ID=Msa0091220-mRNA-1:exon:25574;Parent=Msa0091220-mRNA-1
chr1_2	five_prime_UTR	73368428	73368523	73368428	ID=Msa0091220-mRNA-1:five_prime_utr;Parent=Msa0091220-mRNA-1
chr1_2	CDS	73368524	73368952	73368524	ID=Msa0091220-mRNA-1:cds;Parent=Msa0091220-mRNA-1
chr1_2	CDS	73369239	73369596	73369239	ID=Msa0091220-mRNA-1:cds;Parent=Msa0091220-mRNA-1
chr1_2	CDS	73370782	73370957	73370782	ID=Msa0091220-mRNA-1:cds;Parent=Msa0091220-mRNA-1
chr1_2	three_prime_UTR	73370958	73371432	73370958	ID=Msa0091220-mRNA-1:three_prime_utr;Parent=Msa0091220-mRNA-1

Gene Sequence

>Msa0091220

ATGAAACTATTTCGATCTTTTCTTTTTGGCTTTATTTTATTTTCTTTTCATTTTTATTCGTCACTCCAATTTCAAGCCTCACATTTCTTCAACACACAAATGGCTGCCACACCAGCTACTATCCCCGTCCGGTCCGACCGTATCTCTGCCGGTTCATCTTTCCCAAGACCACCACCGGTTCGCAGTCTTGTTAAACCGATCCTCACCGAACCGTGGCCGCTACGTAGAAGGTGGAAGCACTCGTCAACGAGGAGCGTGGGACCGGTTCAGGCGAGTTCGCGCGCAGATGACTCAGCACCGTTCGAGATGTCGGTTGAAAACGCACTGAAGCTGTTAGGTGTATCGGAAGGTGCTTCCTTTGATGATATACTTCGCGCCAAAAACTCCATCGTTGCTTCTTGCAAAGATGACCAAGAAACTATTTCTCAGGTCGAGGCTGCATATGACATGTTGCTTATGCAGAGGTTAACTCAGCGGCGAGCAGGAAAAGTAGTGAGCAGCAGTGTTCGTTATGCTGATGTAAAACGTGTTCAGTCCCAGGCTAATAGTTCAATGCCTCAATGGATGCAATCCACCATGAAGAAAGCACCAGTTTCAATTGAGTCACCTTCCACCAGTGATCTTGGTCTACAAGCTGGAGTATATGGTGCACTGATGGGTTTGACCTATTTTAGTGGCTCTTCTTCGCCCCCTGCAGGTTATGCTGGGGCTGATGTTCCGGGACTTATCTTGGCTGGTAGCTTTGGAGCTTCCTTGTACTTCATGACCAAAAAGAATGTTAAGTTAGGGAAGGCTGTTGTTATAACAATAGGAGGGCTCGTAGCCGGTGCTGTTGTAGGGTCAGTTGTAGAGAACTGGTTGCAGGTAGATATTGTCCCATTTCTAGGGATACGCTCCCCTGCTGCTGTTGTTAGCGAAGTCATAATCATCTCTCAGTTCTTGGTTTCGCTATACCTAAGGTAG

Protein sequence

>Msa0091220

MKLFRSFLFGFILFSFHFYSSLQFQASHFFNTQMAATPATIPVRSDRISAGSSFPRPPPVRSLVKPILTEPWPLRRRWKHSSTRSVGPVQASSRADDSAPFEMSVENALKLLGVSEGASFDDILRAKNSIVASCKDDQETISQVEAAYDMLLMQRLTQRRAGKVVSSSVRYADVKRVQSQANSSMPQWMQSTMKKAPVSIESPSTSDLGLQAGVYGALMGLTYFSGSSSPPAGYAGADVPGLILAGSFGASLYFMTKKNVKLGKAVVITIGGLVAGAVVGSVVENWLQVDIVPFLGIRSPAAVVSEVIIISQFLVSLYLR*