AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0091240


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0091240 MtrunA17_Chr1g0211281 98.258 287 5 0 34 320 1 287 0.0 567
Msa0091240 MtrunA17_Chr4g0062111 24.215 223 142 4 67 283 15 216 5.65e-13 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0091240 AT2G20920.1 62.585 294 93 6 36 320 2 287 2.59e-113 330

Find 114 sgRNAs with CRISPR-Local

Find 223 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGACTCTTTCAATTGTAAAA+TGG 0.232069 1_2:-73385533 Msa0091240:five_prime_UTR
CATAATCATCTCTCAGTTCT+TGG 0.239865 1_2:-73383072 Msa0091240:CDS
CTCGTAGCCGGTGCTGTTGT+AGG 0.250905 1_2:-73383176 Msa0091240:CDS
GTAGATATTGTCCCATTTCT+AGG 0.260172 1_2:-73383128 Msa0091240:CDS
GTTAGTGAAATCATAATTCT+TGG 0.264371 1_2:-73382838 Msa0091240:three_prime_UTR
ATGAAATGTAGTTGTTTATC+TGG 0.268008 1_2:-73382646 Msa0091240:three_prime_UTR
TTATGCTGGGGCTGATGTTC+CGG 0.280484 1_2:-73384478 Msa0091240:CDS
CTTATCTTGGCTGGTAGCTT+TGG 0.288436 1_2:-73384453 Msa0091240:CDS
CTGCGAACCGGTGGTGGTCT+TGG 0.304197 1_2:+73385300 None:intergenic
CGAAGAAGAGCCACTAAAAT+AGG 0.315687 1_2:+73384512 None:intergenic
ACAGTGAAGGCTACTGTTAT+AGG 0.321766 1_2:-73382953 Msa0091240:three_prime_UTR
AGAAATGTGAGGCTTGAAAT+TGG 0.324760 1_2:+73385397 None:intergenic
GGTCTACAAGCTGGAGTATA+TGG 0.336678 1_2:-73384552 Msa0091240:CDS
TGATGTTCCGGGACTTATCT+TGG 0.337818 1_2:-73384466 Msa0091240:CDS
GAGGAGCGTGGGACCGGTTC+AGG 0.342637 1_2:-73385214 Msa0091240:CDS
CAGTGAAGGCTACTGTTATA+GGG 0.344613 1_2:-73382952 Msa0091240:three_prime_UTR
TGAAACTGGTGCTTTCTTCA+TGG 0.383086 1_2:+73384602 None:intergenic
ATTTCACTAACAAGATCAAC+AGG 0.390058 1_2:+73382850 None:intergenic
TATGCTGGGGCTGATGTTCC+GGG 0.398811 1_2:-73384477 Msa0091240:CDS
TGCGAACCGGTGGTGGTCTT+GGG 0.401013 1_2:+73385301 None:intergenic
TAACCTGAGAAATAGTTTCT+TGG 0.402696 1_2:+73385052 None:intergenic
AACCGTGGCCGCTACGTAGA+AGG 0.413617 1_2:-73385254 Msa0091240:CDS
GGGGAGCGTATCCCTAGAAA+TGG 0.415453 1_2:+73383116 None:intergenic
TCTCTTTACTTAATCTAGAC+AGG 0.417041 1_2:-73382813 Msa0091240:three_prime_UTR
TCACCTTCCACCAGTGATCT+TGG 0.418919 1_2:-73384573 Msa0091240:CDS
AAGGCTGTTGTTATAACAAT+AGG 0.421906 1_2:-73383203 Msa0091240:CDS
TCTACAGCTGATGCGGCCAC+AGG 0.426313 1_2:+73382918 None:intergenic
GCGCGCGAACTCGCCTGAAC+CGG 0.436685 1_2:+73385201 None:intergenic
TAGGGTCAGTTGTAGAGAAC+TGG 0.448419 1_2:-73383157 Msa0091240:CDS
ACATTTCTTCAACACACAAA+TGG 0.450514 1_2:-73385382 Msa0091240:CDS
AGTTGTAGAGAACTGGTTGC+AGG 0.463677 1_2:-73383150 Msa0091240:CDS
TCTACGTAGCGGCCACGGTT+CGG 0.469629 1_2:+73385257 None:intergenic
TGACCAAGAAACTATTTCTC+AGG 0.473361 1_2:-73385055 Msa0091240:intron
CTAAGGTAGACAGGAAAACT+TGG 0.474546 1_2:-73383038 Msa0091240:exon
GAAAACGCACTGAAGCTGTT+AGG 0.474719 1_2:-73385147 Msa0091240:CDS
GTTCCGGGACTTATCTTGGC+TGG 0.475158 1_2:-73384462 Msa0091240:CDS
TCGTAGCCGGTGCTGTTGTA+GGG 0.487487 1_2:-73383175 Msa0091240:CDS
ATCTTTCCCAAGACCACCAC+CGG 0.487703 1_2:-73385307 Msa0091240:CDS
GTCAACGAGGAGCGTGGGAC+CGG 0.488203 1_2:-73385220 Msa0091240:CDS
AGGTTAACTCAGCGGCGAGC+AGG 0.492386 1_2:-73384714 Msa0091240:CDS
CCGCATCAGCTGTAGAGAAC+TGG 0.492954 1_2:-73382911 Msa0091240:three_prime_UTR
TACTGTTATAGGGGTATAGC+TGG 0.493977 1_2:-73382942 Msa0091240:three_prime_UTR
AAGATGAACCGGCAGAGATA+CGG 0.494662 1_2:+73385325 None:intergenic
ACTTCGCTAACAACAGCAGC+AGG 0.498483 1_2:+73383095 None:intergenic
GAAGGTGACTCAATTGAAAC+TGG 0.499493 1_2:+73384588 None:intergenic
GAGATACGGTCGGACCGGAC+GGG 0.499884 1_2:+73385339 None:intergenic
GAGGCATTGAACTATTAGCC+TGG 0.508666 1_2:+73384640 None:intergenic
CATTTGCATGATCATGTCCA+AGG 0.516855 1_2:-73382980 Msa0091240:three_prime_UTR
CTAATAGTTCAATGCCTCAA+TGG 0.518261 1_2:-73384635 Msa0091240:CDS
TGTAAAACGTGTTCAGTCCC+AGG 0.519566 1_2:-73384658 Msa0091240:CDS
TAGATATTGTCCCATTTCTA+GGG 0.520925 1_2:-73383127 Msa0091240:CDS
CTCAGCACCGTTCGAGATGT+CGG 0.522136 1_2:-73385172 Msa0091240:CDS
TCTTGGTTTCGCTATACCTA+AGG 0.523449 1_2:-73383055 Msa0091240:CDS
CCTTGTATCAAAAGCAAACA+TGG 0.523516 1_2:-73382778 Msa0091240:three_prime_UTR
TGGTCTTGGGAAAGATGAAC+CGG 0.528342 1_2:+73385314 None:intergenic
ACTGAAGCTGTTAGGTGTAT+CGG 0.529175 1_2:-73385139 Msa0091240:CDS
TCGCTATACCTAAGGTAGAC+AGG 0.529570 1_2:-73383047 Msa0091240:exon
CGGTCCGACCGTATCTCTGC+CGG 0.529633 1_2:-73385333 Msa0091240:CDS
TCAGCCCCAGCATAACCTGC+AGG 0.529775 1_2:+73384486 None:intergenic
GCTGTTGTTATAACAATAGG+AGG 0.530149 1_2:-73383200 Msa0091240:CDS
GACCGGACGGGGATAGTAGC+TGG 0.530833 1_2:+73385351 None:intergenic
AACTGGTGCTTTCTTCATGG+TGG 0.533216 1_2:+73384605 None:intergenic
ACAATAGGAGGGCTCGTAGC+CGG 0.533690 1_2:-73383188 Msa0091240:CDS
CAGCCCCAGCATAACCTGCA+GGG 0.534202 1_2:+73384487 None:intergenic
AGTGATCTTGGTCTACAAGC+TGG 0.534395 1_2:-73384561 Msa0091240:CDS
CACTCGTCAACGAGGAGCGT+GGG 0.536752 1_2:-73385225 Msa0091240:CDS
CGGCAGAGATACGGTCGGAC+CGG 0.541076 1_2:+73385334 None:intergenic
TAGCCTTCACTGTCAACCCT+TGG 0.542711 1_2:+73382963 None:intergenic
ACAAGACTGCGAACCGGTGG+TGG 0.544708 1_2:+73385294 None:intergenic
GGCGCGAAGTATATCATCAA+AGG 0.548559 1_2:+73385107 None:intergenic
AGAGATACGGTCGGACCGGA+CGG 0.551833 1_2:+73385338 None:intergenic
TGGAGTATATGGTGCACTGA+TGG 0.556326 1_2:-73384541 Msa0091240:CDS
AAGATGATTATTAGCATCAA+CGG 0.557664 1_2:-73385495 Msa0091240:five_prime_UTR
AGGCATTGAACTATTAGCCT+GGG 0.559812 1_2:+73384641 None:intergenic
GGCCACGGTTCGGTGAGGAT+CGG 0.561057 1_2:+73385267 None:intergenic
CACCTTCTACGTAGCGGCCA+CGG 0.561943 1_2:+73385252 None:intergenic
GGGAGCGTATCCCTAGAAAT+GGG 0.562434 1_2:+73383117 None:intergenic
CACCAGCTACTATCCCCGTC+CGG 0.566811 1_2:-73385353 Msa0091240:CDS
AGCTTGTAGACCAAGATCAC+TGG 0.567895 1_2:+73384563 None:intergenic
AGATACGGTCGGACCGGACG+GGG 0.570930 1_2:+73385340 None:intergenic
CTACCAGCCAAGATAAGTCC+CGG 0.574753 1_2:+73384459 None:intergenic
CTACAGCTGATGCGGCCACA+GGG 0.576147 1_2:+73382919 None:intergenic
AACTGACCCTACAACAGCAC+CGG 0.576918 1_2:+73383169 None:intergenic
ATTTGCATGATCATGTCCAA+GGG 0.578012 1_2:-73382979 Msa0091240:three_prime_UTR
GGTTTAACAAGACTGCGAAC+CGG 0.586271 1_2:+73385288 None:intergenic
AGCCCCAGCATAACCTGCAG+GGG 0.587242 1_2:+73384488 None:intergenic
GGAGTATATGGTGCACTGAT+GGG 0.588659 1_2:-73384540 Msa0091240:CDS
GACGGGGATAGTAGCTGGTG+TGG 0.596353 1_2:+73385356 None:intergenic
TGTCCAAGGGTTGACAGTGA+AGG 0.597959 1_2:-73382966 Msa0091240:three_prime_UTR
TTCGCTAACAACAGCAGCAG+GGG 0.605157 1_2:+73383097 None:intergenic
ATCTTTGCAAGAAGCAACGA+TGG 0.607582 1_2:+73385077 None:intergenic
AGTGAAGGCTACTGTTATAG+GGG 0.611438 1_2:-73382951 Msa0091240:three_prime_UTR
GCACTCGTCAACGAGGAGCG+TGG 0.612531 1_2:-73385226 Msa0091240:CDS
GCCCCAGCATAACCTGCAGG+GGG 0.620500 1_2:+73384489 None:intergenic
ATGACATGTTGCTTATGCAG+AGG 0.621680 1_2:-73384734 Msa0091240:CDS
TTAATCTAGACAGGAAAACA+TGG 0.627995 1_2:-73382804 Msa0091240:three_prime_UTR
CGTGGCCGCTACGTAGAAGG+TGG 0.636433 1_2:-73385251 Msa0091240:CDS
CTTCGCTAACAACAGCAGCA+GGG 0.636870 1_2:+73383096 None:intergenic
CCAGTTCTCTACAGCTGATG+CGG 0.638669 1_2:+73382911 None:intergenic
ATGGTGGATTGCATCCATTG+AGG 0.641012 1_2:+73384621 None:intergenic
TTGTAGACCAAGATCACTGG+TGG 0.661997 1_2:+73384566 None:intergenic
AGACCAAGATCACTGGTGGA+AGG 0.664781 1_2:+73384570 None:intergenic
AACCGATCCTCACCGAACCG+TGG 0.674182 1_2:-73385269 Msa0091240:CDS
TTAACAAGACTGCGAACCGG+TGG 0.681707 1_2:+73385291 None:intergenic
CTGTTGTTATAACAATAGGA+GGG 0.684835 1_2:-73383199 Msa0091240:CDS
AAGCTGTTAGGTGTATCGGA+AGG 0.687616 1_2:-73385135 Msa0091240:CDS
TTGTGTGTTGAAGAAATGTG+AGG 0.689449 1_2:+73385386 None:intergenic
GTAGCGGCCACGGTTCGGTG+AGG 0.697717 1_2:+73385262 None:intergenic
TTATGCAGAGGTTAACTCAG+CGG 0.705557 1_2:-73384722 Msa0091240:CDS
TGCTTCCACCTTCTACGTAG+CGG 0.712698 1_2:+73385246 None:intergenic
TAGGGGTATAGCTGGCCCTG+TGG 0.725216 1_2:-73382934 Msa0091240:three_prime_UTR
GGTGGAAGCACTCGTCAACG+AGG 0.726269 1_2:-73385233 Msa0091240:CDS
TGAACCGGCAGAGATACGGT+CGG 0.737243 1_2:+73385329 None:intergenic
TTTCACTAACAAGATCAACA+GGG 0.765605 1_2:+73382851 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ACTTTTGATATTAAAAGTTT+TGG - chr1_2:73384342-73384361 Msa0091240:intron 15.0%
!! AATAAAAGTAAGCATTTAGA+TGG - chr1_2:73383835-73383854 Msa0091240:intron 20.0%
!! ATTATGAATGTCTACAAAAT+TGG + chr1_2:73384202-73384221 None:intergenic 20.0%
!!! TTTTGTAGACATTCATAATA+AGG - chr1_2:73384203-73384222 Msa0091240:intron 20.0%
!!! ACTTTTAATATCAAAAGTCT+GGG + chr1_2:73384340-73384359 None:intergenic 20.0%
!!! AACTTTTAATATCAAAAGTC+TGG + chr1_2:73384341-73384360 None:intergenic 20.0%
!! AAGTTGTTTATCTTAACAAA+TGG - chr1_2:73384475-73384494 Msa0091240:CDS 20.0%
!!! TTTAACTTGAAGATAGAATT+TGG - chr1_2:73384685-73384704 Msa0091240:CDS 20.0%
!!! TTAACTTGAAGATAGAATTT+GGG - chr1_2:73384686-73384705 Msa0091240:CDS 20.0%
!! AAGCTAAAAATCAATTCTAA+AGG + chr1_2:73384719-73384738 None:intergenic 20.0%
! AAGATGATTATTAGCATCAA+CGG - chr1_2:73382640-73382659 Msa0091240:three_prime_UTR 25.0%
!! CTATTTCGATCTTTTCTTTT+TGG - chr1_2:73382679-73382698 Msa0091240:three_prime_UTR 25.0%
! GCTTATATTATAGCTTATAC+AGG + chr1_2:73383192-73383211 None:intergenic 25.0%
! TAATTCTATACACCTATTGA+TGG - chr1_2:73383346-73383365 Msa0091240:intron 25.0%
! ACCAAAAAGAATGTTAAGTT+AGG - chr1_2:73383724-73383743 Msa0091240:intron 25.0%
!! ACCTAACTTAACATTCTTTT+TGG + chr1_2:73383728-73383747 None:intergenic 25.0%
! AAAGAATGTTAAGTTAGGTA+AGG - chr1_2:73383729-73383748 Msa0091240:intron 25.0%
! ACATTGATATTGTAATGCAA+TGG - chr1_2:73383765-73383784 Msa0091240:intron 25.0%
!! TAGAACTTTTCTTTCAACAA+AGG + chr1_2:73383925-73383944 None:intergenic 25.0%
! AATGTACAGTTTCAATAAGA+GGG + chr1_2:73384075-73384094 None:intergenic 25.0%
! AAATGTACAGTTTCAATAAG+AGG + chr1_2:73384076-73384095 None:intergenic 25.0%
! AGAAATGAAGTCTATTCAAT+AGG + chr1_2:73384309-73384328 None:intergenic 25.0%
!!! AGGGTTTTATTTACCTAATA+TGG - chr1_2:73384416-73384435 Msa0091240:CDS 25.0%
!!! GAGATTGTTTCTGTATAAAA+TGG - chr1_2:73384438-73384457 Msa0091240:CDS 25.0%
! TAGTTTAAGAAAGAGGTAAA+CGG + chr1_2:73384547-73384566 None:intergenic 25.0%
! CAAAATCAATTATACACCTT+TGG + chr1_2:73384616-73384635 None:intergenic 25.0%
!!! CAAAGGTGTATAATTGATTT+TGG - chr1_2:73384614-73384633 Msa0091240:CDS 25.0%
!!! ATAATTGATTTTGGCATGTT+TGG - chr1_2:73384623-73384642 Msa0091240:CDS 25.0%
!! CTTCAAGTTAAAATAAATCC+TGG + chr1_2:73384677-73384696 None:intergenic 25.0%
! TAACTTGAAGATAGAATTTG+GGG - chr1_2:73384687-73384706 Msa0091240:CDS 25.0%
! GTTAGTGAAATCATAATTCT+TGG - chr1_2:73385297-73385316 Msa0091240:CDS 25.0%
! ATGAAATGTAGTTGTTTATC+TGG - chr1_2:73385489-73385508 Msa0091240:five_prime_UTR 25.0%
CGACTCTTTCAATTGTAAAA+TGG - chr1_2:73382602-73382621 Msa0091240:three_prime_UTR 30.0%
ACATTTCTTCAACACACAAA+TGG - chr1_2:73382753-73382772 Msa0091240:three_prime_UTR 30.0%
TAACCTGAGAAATAGTTTCT+TGG + chr1_2:73383086-73383105 None:intergenic 30.0%
CAAATCAACAACAAGTAAAG+TGG + chr1_2:73383111-73383130 None:intergenic 30.0%
TACATGAATTTCAAGACCAT+GGG + chr1_2:73383256-73383275 None:intergenic 30.0%
! TGGAATTTCTGTGCATTTTT+AGG - chr1_2:73383366-73383385 Msa0091240:intron 30.0%
!! TGGAATTTTTGTTTCATGAG+TGG - chr1_2:73383785-73383804 Msa0091240:intron 30.0%
!! ATTCGTATTGACTTGTATCA+TGG - chr1_2:73383812-73383831 Msa0091240:intron 30.0%
TCAGTTTCACTAAAGTTATG+TGG - chr1_2:73383979-73383998 Msa0091240:intron 30.0%
! TCTAATGGATCTAATTCATG+TGG + chr1_2:73384008-73384027 None:intergenic 30.0%
! CCTATTGGTTAAAGTTCTAA+TGG + chr1_2:73384023-73384042 None:intergenic 30.0%
CCATTAGAACTTTAACCAAT+AGG - chr1_2:73384020-73384039 Msa0091240:intron 30.0%
ATGTACAGTTTCAATAAGAG+GGG + chr1_2:73384074-73384093 None:intergenic 30.0%
CTTATTGTTTCGACAAAGAA+TGG + chr1_2:73384281-73384300 None:intergenic 30.0%
CATTCTTTGTCGAAACAATA+AGG - chr1_2:73384279-73384298 Msa0091240:intron 30.0%
ATGAAGTCTATTCAATAGGT+TGG + chr1_2:73384305-73384324 None:intergenic 30.0%
ACAGAAACAATCTCCATATT+AGG + chr1_2:73384432-73384451 None:intergenic 30.0%
CTGAGAATAGTTTAAGAAAG+AGG + chr1_2:73384554-73384573 None:intergenic 30.0%
CAAGTTAAAATAAATCCTGG+AGG + chr1_2:73384674-73384693 None:intergenic 30.0%
AAAGCTATTCAGATGAAAGT+AGG + chr1_2:73384758-73384777 None:intergenic 30.0%
CCAAAAGGATTAAGTGTATT+TGG + chr1_2:73384842-73384861 None:intergenic 30.0%
! CCAAATACACTTAATCCTTT+TGG - chr1_2:73384839-73384858 Msa0091240:intron 30.0%
AAATGCTATGCTAATCCAAA+AGG + chr1_2:73384857-73384876 None:intergenic 30.0%
! ATAGAAAAGGGAAGTGTAAA+AGG + chr1_2:73384902-73384921 None:intergenic 30.0%
AAGGCTGTTGTTATAACAAT+AGG - chr1_2:73384932-73384951 Msa0091240:intron 30.0%
CTGTTGTTATAACAATAGGA+GGG - chr1_2:73384936-73384955 Msa0091240:intron 30.0%
TAGATATTGTCCCATTTCTA+GGG - chr1_2:73385008-73385027 Msa0091240:intron 30.0%
! TGTAGAAATTGTCCCATTTT+TGG - chr1_2:73385251-73385270 Msa0091240:CDS 30.0%
!! GTAGAAATTGTCCCATTTTT+GGG - chr1_2:73385252-73385271 Msa0091240:CDS 30.0%
TTTCACTAACAAGATCAACA+GGG + chr1_2:73385287-73385306 None:intergenic 30.0%
ATTTCACTAACAAGATCAAC+AGG + chr1_2:73385288-73385307 None:intergenic 30.0%
TCTCTTTACTTAATCTAGAC+AGG - chr1_2:73385322-73385341 Msa0091240:CDS 30.0%
TTAATCTAGACAGGAAAACA+TGG - chr1_2:73385331-73385350 Msa0091240:CDS 30.0%
! ATCATACCTCAAGCATTTTT+AGG - chr1_2:73385432-73385451 Msa0091240:CDS 30.0%
TTACATCCTAAAAATGCTTG+AGG + chr1_2:73385441-73385460 None:intergenic 30.0%
! AAGATGCAGATTTTATGTTC+AGG - chr1_2:73385545-73385564 Msa0091240:five_prime_UTR 30.0%
! AGATGCAGATTTTATGTTCA+GGG - chr1_2:73385546-73385565 Msa0091240:five_prime_UTR 30.0%
AGAAATGTGAGGCTTGAAAT+TGG + chr1_2:73382741-73382760 None:intergenic 35.0%
TTGTGTGTTGAAGAAATGTG+AGG + chr1_2:73382752-73382771 None:intergenic 35.0%
! TGACCAAGAAACTATTTCTC+AGG - chr1_2:73383080-73383099 Msa0091240:CDS 35.0%
GTACATGAATTTCAAGACCA+TGG + chr1_2:73383257-73383276 None:intergenic 35.0%
! ACTGAAATTGTGAGGTATTC+AGG + chr1_2:73383294-73383313 None:intergenic 35.0%
AACTAGAGACTGAAATTGTG+AGG + chr1_2:73383302-73383321 None:intergenic 35.0%
TGCACAGAAATTCCATCAAT+AGG + chr1_2:73383361-73383380 None:intergenic 35.0%
CTAATAGTTCAATGCCTCAA+TGG - chr1_2:73383500-73383519 Msa0091240:intron 35.0%
!! ATGGGTTTGACCTATTTTAG+TGG - chr1_2:73383613-73383632 Msa0091240:intron 35.0%
!! CTTTTTGGTCATGAAGTACA+AGG + chr1_2:73383713-73383732 None:intergenic 35.0%
AAGCATTTAGATGGCCATAA+TGG - chr1_2:73383844-73383863 Msa0091240:intron 35.0%
AGCATTTAGATGGCCATAAT+GGG - chr1_2:73383845-73383864 Msa0091240:intron 35.0%
TTCAACAAAGGCAAACATGA+AGG + chr1_2:73383913-73383932 None:intergenic 35.0%
CTTTAACCAATAGGAGATAG+TGG - chr1_2:73384029-73384048 Msa0091240:intron 35.0%
TTCTAACCACTATCTCCTAT+TGG + chr1_2:73384038-73384057 None:intergenic 35.0%
TTCTTATACTGCTAATCTGC+TGG - chr1_2:73384367-73384386 Msa0091240:intron 35.0%
! ACAAATGGTACTTCTAGTTG+TGG - chr1_2:73384490-73384509 Msa0091240:CDS 35.0%
! CAAATGGTACTTCTAGTTGT+GGG - chr1_2:73384491-73384510 Msa0091240:CDS 35.0%
!!! TACACCTTTGGAGTCAATTT+TGG + chr1_2:73384604-73384623 None:intergenic 35.0%
! TTGGCATGTTTGGATGTTTT+CGG - chr1_2:73384633-73384652 Msa0091240:CDS 35.0%
!! ATAGAATTGATTTTGCCTCC+AGG - chr1_2:73384656-73384675 Msa0091240:CDS 35.0%
!! ATTAAGTGTATTTGGCTCTG+CGG + chr1_2:73384834-73384853 None:intergenic 35.0%
!!! TTCCCTTTTCTATTTCTGCA+GGG - chr1_2:73384909-73384928 Msa0091240:intron 35.0%
TTCCCTGCAGAAATAGAAAA+GGG + chr1_2:73384914-73384933 None:intergenic 35.0%
GCTGTTGTTATAACAATAGG+AGG - chr1_2:73384935-73384954 Msa0091240:intron 35.0%
GTAGATATTGTCCCATTTCT+AGG - chr1_2:73385007-73385026 Msa0091240:intron 35.0%
CATAATCATCTCTCAGTTCT+TGG - chr1_2:73385063-73385082 Msa0091240:CDS 35.0%
ATTTGCATGATCATGTCCAA+GGG - chr1_2:73385156-73385175 Msa0091240:CDS 35.0%
!! CCATGTTTGCTTTTGATACA+AGG + chr1_2:73385360-73385379 None:intergenic 35.0%
CCTTGTATCAAAAGCAAACA+TGG - chr1_2:73385357-73385376 Msa0091240:CDS 35.0%
! TTTTCAACCGACATCTCGAA+CGG + chr1_2:73382973-73382992 None:intergenic 40.0%
ACTGAAGCTGTTAGGTGTAT+CGG - chr1_2:73382996-73383015 Msa0091240:three_prime_UTR 40.0%
! AGAAGCAACGATGGAGTTTT+TGG + chr1_2:73383052-73383071 None:intergenic 40.0%
ATCTTTGCAAGAAGCAACGA+TGG + chr1_2:73383061-73383080 None:intergenic 40.0%
!!! ATGCTTGAGTTTTTTGCCCA+TGG - chr1_2:73383237-73383256 Msa0091240:intron 40.0%
! TGAGGTATTCAGGACATCAA+GGG + chr1_2:73383284-73383303 None:intergenic 40.0%
!!! TTCTGTGCATTTTTAGGTCG+AGG - chr1_2:73383372-73383391 Msa0091240:intron 40.0%
! ATGACATGTTGCTTATGCAG+AGG - chr1_2:73383401-73383420 Msa0091240:intron 40.0%
TTATGCAGAGGTTAACTCAG+CGG - chr1_2:73383413-73383432 Msa0091240:intron 40.0%
!! AGGCATTGAACTATTAGCCT+GGG + chr1_2:73383497-73383516 None:intergenic 40.0%
TGAAACTGGTGCTTTCTTCA+TGG + chr1_2:73383536-73383555 None:intergenic 40.0%
GAAGGTGACTCAATTGAAAC+TGG + chr1_2:73383550-73383569 None:intergenic 40.0%
CGAAGAAGAGCCACTAAAAT+AGG + chr1_2:73383626-73383645 None:intergenic 40.0%
! ATTTAGATGGCCATAATGGG+TGG - chr1_2:73383848-73383867 Msa0091240:intron 40.0%
!! TTTAGATGGCCATAATGGGT+GGG - chr1_2:73383849-73383868 Msa0091240:intron 40.0%
TGAAGACACAAAGCAATGAG+TGG - chr1_2:73384111-73384130 Msa0091240:intron 40.0%
ATGAGTGGTATGAGTATGCA+AGG - chr1_2:73384126-73384145 Msa0091240:intron 40.0%
AATCTGCTGGATATTACTGC+TGG - chr1_2:73384380-73384399 Msa0091240:intron 40.0%
! AGAGCCAAAATTGACTCCAA+AGG - chr1_2:73384597-73384616 Msa0091240:CDS 40.0%
! GAAAAGGGAAGTGTAAAAGG+AGG + chr1_2:73384899-73384918 None:intergenic 40.0%
!!! CTTCCCTTTTCTATTTCTGC+AGG - chr1_2:73384908-73384927 Msa0091240:intron 40.0%
CTTCCCTGCAGAAATAGAAA+AGG + chr1_2:73384915-73384934 None:intergenic 40.0%
!!! CTTTTCTATTTCTGCAGGGA+AGG - chr1_2:73384913-73384932 Msa0091240:intron 40.0%
TCTTGGTTTCGCTATACCTA+AGG - chr1_2:73385080-73385099 Msa0091240:CDS 40.0%
! CAAGTTTTCCTGTCTACCTT+AGG + chr1_2:73385099-73385118 None:intergenic 40.0%
CTAAGGTAGACAGGAAAACT+TGG - chr1_2:73385097-73385116 Msa0091240:CDS 40.0%
CATTTGCATGATCATGTCCA+AGG - chr1_2:73385155-73385174 Msa0091240:CDS 40.0%
ACAGTGAAGGCTACTGTTAT+AGG - chr1_2:73385182-73385201 Msa0091240:CDS 40.0%
CAGTGAAGGCTACTGTTATA+GGG - chr1_2:73385183-73385202 Msa0091240:CDS 40.0%
AGTGAAGGCTACTGTTATAG+GGG - chr1_2:73385184-73385203 Msa0091240:CDS 40.0%
! TACTGTTATAGGGGTATAGC+TGG - chr1_2:73385193-73385212 Msa0091240:CDS 40.0%
!! ATTGTCCCATTTTTGGGCAT+AGG - chr1_2:73385258-73385277 Msa0091240:CDS 40.0%
GGAATCCTATGCCCAAAAAT+GGG + chr1_2:73385266-73385285 None:intergenic 40.0%
AAGATGAACCGGCAGAGATA+CGG + chr1_2:73382813-73382832 None:intergenic 45.0%
! TGGTCTTGGGAAAGATGAAC+CGG + chr1_2:73382824-73382843 None:intergenic 45.0%
GGTTTAACAAGACTGCGAAC+CGG + chr1_2:73382850-73382869 None:intergenic 45.0%
GAAAACGCACTGAAGCTGTT+AGG - chr1_2:73382988-73383007 Msa0091240:three_prime_UTR 45.0%
AAGCTGTTAGGTGTATCGGA+AGG - chr1_2:73383000-73383019 Msa0091240:three_prime_UTR 45.0%
GGCGCGAAGTATATCATCAA+AGG + chr1_2:73383031-73383050 None:intergenic 45.0%
! GAGGTATTCAGGACATCAAG+GGG + chr1_2:73383283-73383302 None:intergenic 45.0%
! GTGAGGTATTCAGGACATCA+AGG + chr1_2:73383285-73383304 None:intergenic 45.0%
TGTAAAACGTGTTCAGTCCC+AGG - chr1_2:73383477-73383496 Msa0091240:intron 45.0%
!! GAGGCATTGAACTATTAGCC+TGG + chr1_2:73383498-73383517 None:intergenic 45.0%
!! ATGGTGGATTGCATCCATTG+AGG + chr1_2:73383517-73383536 None:intergenic 45.0%
AACTGGTGCTTTCTTCATGG+TGG + chr1_2:73383533-73383552 None:intergenic 45.0%
TTGTAGACCAAGATCACTGG+TGG + chr1_2:73383572-73383591 None:intergenic 45.0%
AGCTTGTAGACCAAGATCAC+TGG + chr1_2:73383575-73383594 None:intergenic 45.0%
AGTGATCTTGGTCTACAAGC+TGG - chr1_2:73383574-73383593 Msa0091240:intron 45.0%
GGTCTACAAGCTGGAGTATA+TGG - chr1_2:73383583-73383602 Msa0091240:intron 45.0%
TGGAGTATATGGTGCACTGA+TGG - chr1_2:73383594-73383613 Msa0091240:intron 45.0%
! GGAGTATATGGTGCACTGAT+GGG - chr1_2:73383595-73383614 Msa0091240:intron 45.0%
TGATGTTCCGGGACTTATCT+TGG - chr1_2:73383669-73383688 Msa0091240:intron 45.0%
CTTATCTTGGCTGGTAGCTT+TGG - chr1_2:73383682-73383701 Msa0091240:intron 45.0%
TTGGTGCACTGTATGATGCA+AGG + chr1_2:73384183-73384202 None:intergenic 45.0%
!! TGCTGGTGTCTTTGAAGTGA+GGG - chr1_2:73384397-73384416 Msa0091240:intron 45.0%
! ATGGTACTTCTAGTTGTGGG+TGG - chr1_2:73384494-73384513 Msa0091240:CDS 45.0%
TAGGGTCAGTTGTAGAGAAC+TGG - chr1_2:73384978-73384997 Msa0091240:intron 45.0%
AGTTGTAGAGAACTGGTTGC+AGG - chr1_2:73384985-73385004 Msa0091240:intron 45.0%
TCGCTATACCTAAGGTAGAC+AGG - chr1_2:73385088-73385107 Msa0091240:CDS 45.0%
GGGAATCCTATGCCCAAAAA+TGG + chr1_2:73385267-73385286 None:intergenic 45.0%
! GCAGATTTTATGTTCAGGGC+TGG - chr1_2:73385550-73385569 Msa0091240:five_prime_UTR 45.0%
ATCTTTCCCAAGACCACCAC+CGG - chr1_2:73382828-73382847 Msa0091240:three_prime_UTR 50.0%
TTAACAAGACTGCGAACCGG+TGG + chr1_2:73382847-73382866 None:intergenic 50.0%
TGCTTCCACCTTCTACGTAG+CGG + chr1_2:73382892-73382911 None:intergenic 50.0%
TCACCTTCCACCAGTGATCT+TGG - chr1_2:73383562-73383581 Msa0091240:intron 50.0%
AGACCAAGATCACTGGTGGA+AGG + chr1_2:73383568-73383587 None:intergenic 50.0%
TTATGCTGGGGCTGATGTTC+CGG - chr1_2:73383657-73383676 Msa0091240:intron 50.0%
CTACCAGCCAAGATAAGTCC+CGG + chr1_2:73383679-73383698 None:intergenic 50.0%
TCCTACTCTCCCACCCATTA+TGG + chr1_2:73383861-73383880 None:intergenic 50.0%
!! CTGCTGGTGTCTTTGAAGTG+AGG - chr1_2:73384396-73384415 Msa0091240:intron 50.0%
AACTGACCCTACAACAGCAC+CGG + chr1_2:73384969-73384988 None:intergenic 50.0%
! GGGAGCGTATCCCTAGAAAT+GGG + chr1_2:73385021-73385040 None:intergenic 50.0%
TTCGCTAACAACAGCAGCAG+GGG + chr1_2:73385041-73385060 None:intergenic 50.0%
CTTCGCTAACAACAGCAGCA+GGG + chr1_2:73385042-73385061 None:intergenic 50.0%
ACTTCGCTAACAACAGCAGC+AGG + chr1_2:73385043-73385062 None:intergenic 50.0%
TGTCCAAGGGTTGACAGTGA+AGG - chr1_2:73385169-73385188 Msa0091240:CDS 50.0%
TAGCCTTCACTGTCAACCCT+TGG + chr1_2:73385175-73385194 None:intergenic 50.0%
CCAGTTCTCTACAGCTGATG+CGG + chr1_2:73385227-73385246 None:intergenic 50.0%
TGAACCGGCAGAGATACGGT+CGG + chr1_2:73382809-73382828 None:intergenic 55.0%
CTCAGCACCGTTCGAGATGT+CGG - chr1_2:73382963-73382982 Msa0091240:three_prime_UTR 55.0%
TATGCTGGGGCTGATGTTCC+GGG - chr1_2:73383658-73383677 Msa0091240:intron 55.0%
GTTCCGGGACTTATCTTGGC+TGG - chr1_2:73383673-73383692 Msa0091240:intron 55.0%
!! GCCATAATGGGTGGGAGAGT+AGG - chr1_2:73383857-73383876 Msa0091240:intron 55.0%
ACAATAGGAGGGCTCGTAGC+CGG - chr1_2:73384947-73384966 Msa0091240:intron 55.0%
!! TCGTAGCCGGTGCTGTTGTA+GGG - chr1_2:73384960-73384979 Msa0091240:intron 55.0%
! GGGGAGCGTATCCCTAGAAA+TGG + chr1_2:73385022-73385041 None:intergenic 55.0%
CCGCATCAGCTGTAGAGAAC+TGG - chr1_2:73385224-73385243 Msa0091240:CDS 55.0%
GACGGGGATAGTAGCTGGTG+TGG + chr1_2:73382782-73382801 None:intergenic 60.0%
CACCAGCTACTATCCCCGTC+CGG - chr1_2:73382782-73382801 Msa0091240:three_prime_UTR 60.0%
AGAGATACGGTCGGACCGGA+CGG + chr1_2:73382800-73382819 None:intergenic 60.0%
! TGCGAACCGGTGGTGGTCTT+GGG + chr1_2:73382837-73382856 None:intergenic 60.0%
ACAAGACTGCGAACCGGTGG+TGG + chr1_2:73382844-73382863 None:intergenic 60.0%
AACCGATCCTCACCGAACCG+TGG - chr1_2:73382866-73382885 Msa0091240:three_prime_UTR 60.0%
TCTACGTAGCGGCCACGGTT+CGG + chr1_2:73382881-73382900 None:intergenic 60.0%
AACCGTGGCCGCTACGTAGA+AGG - chr1_2:73382881-73382900 Msa0091240:three_prime_UTR 60.0%
CACCTTCTACGTAGCGGCCA+CGG + chr1_2:73382886-73382905 None:intergenic 60.0%
!! GGTGGAAGCACTCGTCAACG+AGG - chr1_2:73382902-73382921 Msa0091240:three_prime_UTR 60.0%
! CACTCGTCAACGAGGAGCGT+GGG - chr1_2:73382910-73382929 Msa0091240:three_prime_UTR 60.0%
AGGTTAACTCAGCGGCGAGC+AGG - chr1_2:73383421-73383440 Msa0091240:intron 60.0%
AGCCCCAGCATAACCTGCAG+GGG + chr1_2:73383650-73383669 None:intergenic 60.0%
CAGCCCCAGCATAACCTGCA+GGG + chr1_2:73383651-73383670 None:intergenic 60.0%
TCAGCCCCAGCATAACCTGC+AGG + chr1_2:73383652-73383671 None:intergenic 60.0%
!! CTCGTAGCCGGTGCTGTTGT+AGG - chr1_2:73384959-73384978 Msa0091240:intron 60.0%
! TAGGGGTATAGCTGGCCCTG+TGG - chr1_2:73385201-73385220 Msa0091240:CDS 60.0%
CTACAGCTGATGCGGCCACA+GGG + chr1_2:73385219-73385238 None:intergenic 60.0%
TCTACAGCTGATGCGGCCAC+AGG + chr1_2:73385220-73385239 None:intergenic 60.0%
GACCGGACGGGGATAGTAGC+TGG + chr1_2:73382787-73382806 None:intergenic 65.0%
AGATACGGTCGGACCGGACG+GGG + chr1_2:73382798-73382817 None:intergenic 65.0%
GAGATACGGTCGGACCGGAC+GGG + chr1_2:73382799-73382818 None:intergenic 65.0%
CGGCAGAGATACGGTCGGAC+CGG + chr1_2:73382804-73382823 None:intergenic 65.0%
CGGTCCGACCGTATCTCTGC+CGG - chr1_2:73382802-73382821 Msa0091240:three_prime_UTR 65.0%
! CTGCGAACCGGTGGTGGTCT+TGG + chr1_2:73382838-73382857 None:intergenic 65.0%
!! GGCCACGGTTCGGTGAGGAT+CGG + chr1_2:73382871-73382890 None:intergenic 65.0%
CGTGGCCGCTACGTAGAAGG+TGG - chr1_2:73382884-73382903 Msa0091240:three_prime_UTR 65.0%
GCACTCGTCAACGAGGAGCG+TGG - chr1_2:73382909-73382928 Msa0091240:three_prime_UTR 65.0%
! GTCAACGAGGAGCGTGGGAC+CGG - chr1_2:73382915-73382934 Msa0091240:three_prime_UTR 65.0%
TCGCCCCCTGCAGGTTATGC+TGG - chr1_2:73383643-73383662 Msa0091240:intron 65.0%
CGCCCCCTGCAGGTTATGCT+GGG - chr1_2:73383644-73383663 Msa0091240:intron 65.0%
GCCCCCTGCAGGTTATGCTG+GGG - chr1_2:73383645-73383664 Msa0091240:intron 65.0%
GCCCCAGCATAACCTGCAGG+GGG + chr1_2:73383649-73383668 None:intergenic 65.0%
!! GTAGCGGCCACGGTTCGGTG+AGG + chr1_2:73382876-73382895 None:intergenic 70.0%
! GAGGAGCGTGGGACCGGTTC+AGG - chr1_2:73382921-73382940 Msa0091240:three_prime_UTR 70.0%
GCGCGCGAACTCGCCTGAAC+CGG + chr1_2:73382937-73382956 None:intergenic 70.0%
GGCTCTTCTTCGCCCCCTGC+AGG - chr1_2:73383634-73383653 Msa0091240:intron 70.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 73382577 73385580 73382577 ID=Msa0091240;Name=Msa0091240
chr1_2 mRNA 73382577 73385580 73382577 ID=Msa0091240-mRNA-1;Parent=Msa0091240;Name=Msa0091240-mRNA-1;_AED=0.01;_eAED=0.01;_QI=96|1|1|1|1|1|3|475|320
chr1_2 exon 73382577 73383227 73382577 ID=Msa0091240-mRNA-1:exon:25613;Parent=Msa0091240-mRNA-1
chr1_2 exon 73384412 73384769 73384412 ID=Msa0091240-mRNA-1:exon:25612;Parent=Msa0091240-mRNA-1
chr1_2 exon 73385056 73385580 73385056 ID=Msa0091240-mRNA-1:exon:25611;Parent=Msa0091240-mRNA-1
chr1_2 five_prime_UTR 73385485 73385580 73385485 ID=Msa0091240-mRNA-1:five_prime_utr;Parent=Msa0091240-mRNA-1
chr1_2 CDS 73385056 73385484 73385056 ID=Msa0091240-mRNA-1:cds;Parent=Msa0091240-mRNA-1
chr1_2 CDS 73384412 73384769 73384412 ID=Msa0091240-mRNA-1:cds;Parent=Msa0091240-mRNA-1
chr1_2 CDS 73383052 73383227 73383052 ID=Msa0091240-mRNA-1:cds;Parent=Msa0091240-mRNA-1
chr1_2 three_prime_UTR 73382577 73383051 73382577 ID=Msa0091240-mRNA-1:three_prime_utr;Parent=Msa0091240-mRNA-1
Gene Sequence

>Msa0091240

ATGAAACTATTTCGATCTTTTCTTTTTGGCTTTATTTTATTTTCTTTTCATTTTTATTCGTCACTCCAATTTCAAGCCTCACATTTCTTCAACACACAAATGGCTGCCACACCAGCTACTATCCCCGTCCGGTCCGACCGTATCTCTGCCGGTTCATCTTTCCCAAGACCACCACCGGTTCGCAGTCTTGTTAAACCGATCCTCACCGAACCGTGGCCGCTACGTAGAAGGTGGAAGCACTCGTCAACGAGGAGCGTGGGACCGGTTCAGGCGAGTTCGCGCGCAGATGACTCAGCACCGTTCGAGATGTCGGTTGAAAACGCACTGAAGCTGTTAGGTGTATCGGAAGGTGCTTCCTTTGATGATATACTTCGCGCCAAAAACTCCATCGTTGCTTCTTGCAAAGATGACCAAGAAACTATTTCTCAGGTCGAGGCTGCATATGACATGTTGCTTATGCAGAGGTTAACTCAGCGGCGAGCAGGAAAAGTAGTGAGCAGCAGTGTTCGTTATGCTGATGTAAAACGTGTTCAGTCCCAGGCTAATAGTTCAATGCCTCAATGGATGCAATCCACCATGAAGAAAGCACCAGTTTCAATTGAGTCACCTTCCACCAGTGATCTTGGTCTACAAGCTGGAGTATATGGTGCACTGATGGGTTTGACCTATTTTAGTGGCTCTTCTTCGCCCCCTGCAGGTTATGCTGGGGCTGATGTTCCGGGACTTATCTTGGCTGGTAGCTTTGGAGCTTCCTTGTACTTCATGACCAAAAAGAATGTTAAGTTAGGGAAGGCTGTTGTTATAACAATAGGAGGGCTCGTAGCCGGTGCTGTTGTAGGGTCAGTTGTAGAGAACTGGTTGCAGGTAGATATTGTCCCATTTCTAGGGATACGCTCCCCTGCTGCTGTTGTTAGCGAAGTCATAATCATCTCTCAGTTCTTGGTTTCGCTATACCTAAGGTAG

Protein sequence

>Msa0091240

MKLFRSFLFGFILFSFHFYSSLQFQASHFFNTQMAATPATIPVRSDRISAGSSFPRPPPVRSLVKPILTEPWPLRRRWKHSSTRSVGPVQASSRADDSAPFEMSVENALKLLGVSEGASFDDILRAKNSIVASCKDDQETISQVEAAYDMLLMQRLTQRRAGKVVSSSVRYADVKRVQSQANSSMPQWMQSTMKKAPVSIESPSTSDLGLQAGVYGALMGLTYFSGSSSPPAGYAGADVPGLILAGSFGASLYFMTKKNVKLGKAVVITIGGLVAGAVVGSVVENWLQVDIVPFLGIRSPAAVVSEVIIISQFLVSLYLR*