AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0044530


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0044530 MtrunA17_Chr1g0211281 98.258 287 5 0 1 287 1 287 0.0 566
Msa0044530 MtrunA17_Chr4g0062111 24.215 223 142 4 34 250 15 216 4.76e-13 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0044530 AT2G20920.1 62.585 294 93 6 3 287 2 287 4.09e-114 330

Find 112 sgRNAs with CRISPR-Local

Find 221 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATAATCATCTCTCAGTTCT+TGG 0.239865 1_1:-76114833 Msa0044530:CDS
CTCGTAGCCGGTGCTGTTGT+AGG 0.250905 1_1:-76114937 Msa0044530:CDS
GTAGATATTGTCCCATTTCT+AGG 0.260172 1_1:-76114889 Msa0044530:CDS
GTTAGTGAAATCATAATTCT+TGG 0.264371 1_1:-76114599 Msa0044530:three_prime_UTR
ATGAAATGTAGTTGTTTATC+TGG 0.268008 1_1:-76114407 Msa0044530:three_prime_UTR
TTATGCTGGGGCTGATGTTC+CGG 0.280484 1_1:-76116239 Msa0044530:CDS
CTTATCTTGGCTGGTAGCTT+TGG 0.288436 1_1:-76116214 Msa0044530:CDS
CTGCGAACCGGTGGTGGTCT+TGG 0.304197 1_1:+76117061 None:intergenic
CGAAGAAGAGCCACTAAAAT+AGG 0.315687 1_1:+76116273 None:intergenic
ACAGTGAAGGCTACTGTTAT+AGG 0.321766 1_1:-76114714 Msa0044530:three_prime_UTR
AGAAATGTGAGGCTTGAAAT+TGG 0.324760 1_1:+76117158 None:intergenic
GGTCTACAAGCTGGAGTATA+TGG 0.336678 1_1:-76116313 Msa0044530:CDS
TGATGTTCCGGGACTTATCT+TGG 0.337818 1_1:-76116227 Msa0044530:CDS
GAGGAGCGTGGGACCGGTTC+AGG 0.342637 1_1:-76116975 Msa0044530:CDS
CAGTGAAGGCTACTGTTATA+GGG 0.344613 1_1:-76114713 Msa0044530:three_prime_UTR
TGAAACTGGTGCTTTCTTCA+TGG 0.383086 1_1:+76116363 None:intergenic
ATTTCACTAACAAGATCAAC+AGG 0.390058 1_1:+76114611 None:intergenic
TATGCTGGGGCTGATGTTCC+GGG 0.398811 1_1:-76116238 Msa0044530:CDS
TGCGAACCGGTGGTGGTCTT+GGG 0.401013 1_1:+76117062 None:intergenic
TAACCTGAGAAATAGTTTCT+TGG 0.402696 1_1:+76116813 None:intergenic
AACCGTGGCCGCTACGTAGA+AGG 0.413617 1_1:-76117015 Msa0044530:CDS
GGGGAGCGTATCCCTAGAAA+TGG 0.415453 1_1:+76114877 None:intergenic
TCTCTTTACTTAATCTAGAC+AGG 0.417041 1_1:-76114574 Msa0044530:three_prime_UTR
TCACCTTCCACCAGTGATCT+TGG 0.418919 1_1:-76116334 Msa0044530:CDS
AAGGCTGTTGTTATAACAAT+AGG 0.421906 1_1:-76114964 Msa0044530:CDS
TCTACAGCTGATGCGGCCAC+AGG 0.426313 1_1:+76114679 None:intergenic
GCGCGCGAACTCGCCTGAAC+CGG 0.436685 1_1:+76116962 None:intergenic
TAGGGTCAGTTGTAGAGAAC+TGG 0.448419 1_1:-76114918 Msa0044530:CDS
ACATTTCTTCAACACACAAA+TGG 0.450514 1_1:-76117143 Msa0044530:exon
AGTTGTAGAGAACTGGTTGC+AGG 0.463677 1_1:-76114911 Msa0044530:CDS
TCTACGTAGCGGCCACGGTT+CGG 0.469629 1_1:+76117018 None:intergenic
TGACCAAGAAACTATTTCTC+AGG 0.473361 1_1:-76116816 Msa0044530:intron
CTAAGGTAGACAGGAAAACT+TGG 0.474546 1_1:-76114799 Msa0044530:exon
GAAAACGCACTGAAGCTGTT+AGG 0.474719 1_1:-76116908 Msa0044530:CDS
GTTCCGGGACTTATCTTGGC+TGG 0.475158 1_1:-76116223 Msa0044530:CDS
TCGTAGCCGGTGCTGTTGTA+GGG 0.487487 1_1:-76114936 Msa0044530:CDS
ATCTTTCCCAAGACCACCAC+CGG 0.487703 1_1:-76117068 Msa0044530:CDS
GTCAACGAGGAGCGTGGGAC+CGG 0.488203 1_1:-76116981 Msa0044530:CDS
AGGTTAACTCAGCGGCGAGC+AGG 0.492386 1_1:-76116475 Msa0044530:CDS
CCGCATCAGCTGTAGAGAAC+TGG 0.492954 1_1:-76114672 Msa0044530:three_prime_UTR
TACTGTTATAGGGGTATAGC+TGG 0.493977 1_1:-76114703 Msa0044530:three_prime_UTR
AAGATGAACCGGCAGAGATA+CGG 0.494662 1_1:+76117086 None:intergenic
ACTTCGCTAACAACAGCAGC+AGG 0.498483 1_1:+76114856 None:intergenic
GAAGGTGACTCAATTGAAAC+TGG 0.499493 1_1:+76116349 None:intergenic
GAGATACGGTCGGACCGGAC+GGG 0.499884 1_1:+76117100 None:intergenic
GAGGCATTGAACTATTAGCC+TGG 0.508666 1_1:+76116401 None:intergenic
CATTTGCATGATCATGTCCA+AGG 0.516855 1_1:-76114741 Msa0044530:three_prime_UTR
CTAATAGTTCAATGCCTCAA+TGG 0.518261 1_1:-76116396 Msa0044530:CDS
TGTAAAACGTGTTCAGTCCC+AGG 0.519566 1_1:-76116419 Msa0044530:CDS
TAGATATTGTCCCATTTCTA+GGG 0.520925 1_1:-76114888 Msa0044530:CDS
CTCAGCACCGTTCGAGATGT+CGG 0.522136 1_1:-76116933 Msa0044530:CDS
TCTTGGTTTCGCTATACCTA+AGG 0.523449 1_1:-76114816 Msa0044530:CDS
CCTTGTATCAAAAGCAAACA+TGG 0.523516 1_1:-76114539 Msa0044530:three_prime_UTR
TGGTCTTGGGAAAGATGAAC+CGG 0.528342 1_1:+76117075 None:intergenic
ACTGAAGCTGTTAGGTGTAT+CGG 0.529175 1_1:-76116900 Msa0044530:CDS
TCGCTATACCTAAGGTAGAC+AGG 0.529570 1_1:-76114808 Msa0044530:exon
CGGTCCGACCGTATCTCTGC+CGG 0.529633 1_1:-76117094 Msa0044530:CDS
TCAGCCCCAGCATAACCTGC+AGG 0.529775 1_1:+76116247 None:intergenic
GCTGTTGTTATAACAATAGG+AGG 0.530149 1_1:-76114961 Msa0044530:CDS
GACCGGACGGGGATAGTAGC+TGG 0.530833 1_1:+76117112 None:intergenic
AACTGGTGCTTTCTTCATGG+TGG 0.533216 1_1:+76116366 None:intergenic
ACAATAGGAGGGCTCGTAGC+CGG 0.533690 1_1:-76114949 Msa0044530:CDS
CAGCCCCAGCATAACCTGCA+GGG 0.534202 1_1:+76116248 None:intergenic
AGTGATCTTGGTCTACAAGC+TGG 0.534395 1_1:-76116322 Msa0044530:CDS
CACTCGTCAACGAGGAGCGT+GGG 0.536752 1_1:-76116986 Msa0044530:CDS
CGGCAGAGATACGGTCGGAC+CGG 0.541076 1_1:+76117095 None:intergenic
TAGCCTTCACTGTCAACCCT+TGG 0.542711 1_1:+76114724 None:intergenic
ACAAGACTGCGAACCGGTGG+TGG 0.544708 1_1:+76117055 None:intergenic
GGCGCGAAGTATATCATCAA+AGG 0.548559 1_1:+76116868 None:intergenic
AGAGATACGGTCGGACCGGA+CGG 0.551833 1_1:+76117099 None:intergenic
TGGAGTATATGGTGCACTGA+TGG 0.556326 1_1:-76116302 Msa0044530:CDS
AGGCATTGAACTATTAGCCT+GGG 0.559812 1_1:+76116402 None:intergenic
GGCCACGGTTCGGTGAGGAT+CGG 0.561057 1_1:+76117028 None:intergenic
CACCTTCTACGTAGCGGCCA+CGG 0.561943 1_1:+76117013 None:intergenic
GGGAGCGTATCCCTAGAAAT+GGG 0.562434 1_1:+76114878 None:intergenic
CACCAGCTACTATCCCCGTC+CGG 0.566811 1_1:-76117114 Msa0044530:CDS
AGCTTGTAGACCAAGATCAC+TGG 0.567895 1_1:+76116324 None:intergenic
AGATACGGTCGGACCGGACG+GGG 0.570930 1_1:+76117101 None:intergenic
CTACCAGCCAAGATAAGTCC+CGG 0.574753 1_1:+76116220 None:intergenic
CTACAGCTGATGCGGCCACA+GGG 0.576147 1_1:+76114680 None:intergenic
AACTGACCCTACAACAGCAC+CGG 0.576918 1_1:+76114930 None:intergenic
ATTTGCATGATCATGTCCAA+GGG 0.578012 1_1:-76114740 Msa0044530:three_prime_UTR
GGTTTAACAAGACTGCGAAC+CGG 0.586271 1_1:+76117049 None:intergenic
AGCCCCAGCATAACCTGCAG+GGG 0.587242 1_1:+76116249 None:intergenic
GGAGTATATGGTGCACTGAT+GGG 0.588659 1_1:-76116301 Msa0044530:CDS
GACGGGGATAGTAGCTGGTG+TGG 0.596353 1_1:+76117117 None:intergenic
TGTCCAAGGGTTGACAGTGA+AGG 0.597959 1_1:-76114727 Msa0044530:three_prime_UTR
TTCGCTAACAACAGCAGCAG+GGG 0.605157 1_1:+76114858 None:intergenic
ATCTTTGCAAGAAGCAACGA+TGG 0.607582 1_1:+76116838 None:intergenic
AGTGAAGGCTACTGTTATAG+GGG 0.611438 1_1:-76114712 Msa0044530:three_prime_UTR
GCACTCGTCAACGAGGAGCG+TGG 0.612531 1_1:-76116987 Msa0044530:CDS
GCCCCAGCATAACCTGCAGG+GGG 0.620500 1_1:+76116250 None:intergenic
ATGACATGTTGCTTATGCAG+AGG 0.621680 1_1:-76116495 Msa0044530:CDS
TTAATCTAGACAGGAAAACA+TGG 0.627995 1_1:-76114565 Msa0044530:three_prime_UTR
CGTGGCCGCTACGTAGAAGG+TGG 0.636433 1_1:-76117012 Msa0044530:CDS
CTTCGCTAACAACAGCAGCA+GGG 0.636870 1_1:+76114857 None:intergenic
CCAGTTCTCTACAGCTGATG+CGG 0.638669 1_1:+76114672 None:intergenic
ATGGTGGATTGCATCCATTG+AGG 0.641012 1_1:+76116382 None:intergenic
TTGTAGACCAAGATCACTGG+TGG 0.661997 1_1:+76116327 None:intergenic
AGACCAAGATCACTGGTGGA+AGG 0.664781 1_1:+76116331 None:intergenic
AACCGATCCTCACCGAACCG+TGG 0.674182 1_1:-76117030 Msa0044530:CDS
TTAACAAGACTGCGAACCGG+TGG 0.681707 1_1:+76117052 None:intergenic
CTGTTGTTATAACAATAGGA+GGG 0.684835 1_1:-76114960 Msa0044530:CDS
AAGCTGTTAGGTGTATCGGA+AGG 0.687616 1_1:-76116896 Msa0044530:CDS
TTGTGTGTTGAAGAAATGTG+AGG 0.689449 1_1:+76117147 None:intergenic
GTAGCGGCCACGGTTCGGTG+AGG 0.697717 1_1:+76117023 None:intergenic
TTATGCAGAGGTTAACTCAG+CGG 0.705557 1_1:-76116483 Msa0044530:CDS
TGCTTCCACCTTCTACGTAG+CGG 0.712698 1_1:+76117007 None:intergenic
TAGGGGTATAGCTGGCCCTG+TGG 0.725216 1_1:-76114695 Msa0044530:three_prime_UTR
GGTGGAAGCACTCGTCAACG+AGG 0.726269 1_1:-76116994 Msa0044530:CDS
TGAACCGGCAGAGATACGGT+CGG 0.737243 1_1:+76117090 None:intergenic
TTTCACTAACAAGATCAACA+GGG 0.765605 1_1:+76114612 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTTTGATCTTTTCTTTT+TGG - chr1_1:76114374-76114393 Msa0044530:three_prime_UTR 15.0%
!!! ACTTTTGATATTAAAAGTTT+TGG - chr1_1:76116037-76116056 Msa0044530:intron 15.0%
!! AATAAAAGTAAGCATTTAGA+TGG - chr1_1:76115530-76115549 Msa0044530:intron 20.0%
!! ATTATGAATGTCTACAAAAT+TGG + chr1_1:76115898-76115917 None:intergenic 20.0%
!!! TTTTGTAGACATTCATAATA+AGG - chr1_1:76115899-76115918 Msa0044530:intron 20.0%
!!! ACTTTTAATATCAAAAGTCT+GGG + chr1_1:76116035-76116054 None:intergenic 20.0%
!!! AACTTTTAATATCAAAAGTC+TGG + chr1_1:76116036-76116055 None:intergenic 20.0%
!! AAGTTGTTTATCTTAACAAA+TGG - chr1_1:76116170-76116189 Msa0044530:intron 20.0%
!!! TTTAACTTGAAGATAGAATT+TGG - chr1_1:76116380-76116399 Msa0044530:CDS 20.0%
!!! TTAACTTGAAGATAGAATTT+GGG - chr1_1:76116381-76116400 Msa0044530:CDS 20.0%
!! AAGCTAAAAATCAATTCTAA+AGG + chr1_1:76116414-76116433 None:intergenic 20.0%
! GCTTATATTATAGCTTATAC+AGG + chr1_1:76114887-76114906 None:intergenic 25.0%
! TAATTCTATACACCTATTGA+TGG - chr1_1:76115041-76115060 Msa0044530:intron 25.0%
! ACCAAAAAGAATGTTAAGTT+AGG - chr1_1:76115419-76115438 Msa0044530:intron 25.0%
!! ACCTAACTTAACATTCTTTT+TGG + chr1_1:76115423-76115442 None:intergenic 25.0%
! AAAGAATGTTAAGTTAGGTA+AGG - chr1_1:76115424-76115443 Msa0044530:intron 25.0%
! ACATTGATATTGTAATGCAA+TGG - chr1_1:76115460-76115479 Msa0044530:intron 25.0%
!! TAGAACTTTTCTTTCAACAA+AGG + chr1_1:76115621-76115640 None:intergenic 25.0%
! AATGTACAGTTTCAATAAGA+GGG + chr1_1:76115771-76115790 None:intergenic 25.0%
! AAATGTACAGTTTCAATAAG+AGG + chr1_1:76115772-76115791 None:intergenic 25.0%
! AGAAATGAAGTCTATTCAAT+AGG + chr1_1:76116004-76116023 None:intergenic 25.0%
!!! AGGGTTTTATTTACCTAATA+TGG - chr1_1:76116111-76116130 Msa0044530:intron 25.0%
!!! GAGATTGTTTCTGTATAAAA+TGG - chr1_1:76116133-76116152 Msa0044530:intron 25.0%
! TAGTTTAAGAAAGAGGTAAA+CGG + chr1_1:76116242-76116261 None:intergenic 25.0%
! CAAAATCAATTATACACCTT+TGG + chr1_1:76116311-76116330 None:intergenic 25.0%
!!! CAAAGGTGTATAATTGATTT+TGG - chr1_1:76116309-76116328 Msa0044530:CDS 25.0%
!!! ATAATTGATTTTGGCATGTT+TGG - chr1_1:76116318-76116337 Msa0044530:CDS 25.0%
!! CTTCAAGTTAAAATAAATCC+TGG + chr1_1:76116372-76116391 None:intergenic 25.0%
! TAACTTGAAGATAGAATTTG+GGG - chr1_1:76116382-76116401 Msa0044530:CDS 25.0%
! GTTAGTGAAATCATAATTCT+TGG - chr1_1:76116992-76117011 Msa0044530:CDS 25.0%
! ATGAAATGTAGTTGTTTATC+TGG - chr1_1:76117184-76117203 Msa0044530:five_prime_UTR 25.0%
ACATTTCTTCAACACACAAA+TGG - chr1_1:76114448-76114467 Msa0044530:three_prime_UTR 30.0%
TAACCTGAGAAATAGTTTCT+TGG + chr1_1:76114781-76114800 None:intergenic 30.0%
CAAATCAACAACAAGTAAAG+TGG + chr1_1:76114806-76114825 None:intergenic 30.0%
TACATGAATTTCAAGACCAT+GGG + chr1_1:76114951-76114970 None:intergenic 30.0%
! TGGAATTTCTGTGCATTTTT+AGG - chr1_1:76115061-76115080 Msa0044530:intron 30.0%
!! TGGAATTTTTGTTTCATGAG+TGG - chr1_1:76115480-76115499 Msa0044530:intron 30.0%
!! ATTCGTATTGACTTGTATCA+TGG - chr1_1:76115507-76115526 Msa0044530:intron 30.0%
TCAGTTTCACTAAAGTTATG+TGG - chr1_1:76115675-76115694 Msa0044530:intron 30.0%
! TCTAATGGATCTAATTCATG+TGG + chr1_1:76115704-76115723 None:intergenic 30.0%
! CCTATTGGTTAAAGTTCTAA+TGG + chr1_1:76115719-76115738 None:intergenic 30.0%
CCATTAGAACTTTAACCAAT+AGG - chr1_1:76115716-76115735 Msa0044530:intron 30.0%
ATGTACAGTTTCAATAAGAG+GGG + chr1_1:76115770-76115789 None:intergenic 30.0%
CTTATTGTTTCGACAAAGAA+TGG + chr1_1:76115976-76115995 None:intergenic 30.0%
CATTCTTTGTCGAAACAATA+AGG - chr1_1:76115974-76115993 Msa0044530:intron 30.0%
ATGAAGTCTATTCAATAGGT+TGG + chr1_1:76116000-76116019 None:intergenic 30.0%
ACAGAAACAATCTCCATATT+AGG + chr1_1:76116127-76116146 None:intergenic 30.0%
CTGAGAATAGTTTAAGAAAG+AGG + chr1_1:76116249-76116268 None:intergenic 30.0%
CAAGTTAAAATAAATCCTGG+AGG + chr1_1:76116369-76116388 None:intergenic 30.0%
AAAGCTATTCAGATGAAAGT+AGG + chr1_1:76116453-76116472 None:intergenic 30.0%
CCAAAAGGATTAAGTGTATT+TGG + chr1_1:76116537-76116556 None:intergenic 30.0%
! CCAAATACACTTAATCCTTT+TGG - chr1_1:76116534-76116553 Msa0044530:intron 30.0%
AAATGCTATGCTAATCCAAA+AGG + chr1_1:76116552-76116571 None:intergenic 30.0%
! ATAGAAAAGGGAAGTGTAAA+AGG + chr1_1:76116597-76116616 None:intergenic 30.0%
AAGGCTGTTGTTATAACAAT+AGG - chr1_1:76116627-76116646 Msa0044530:intron 30.0%
CTGTTGTTATAACAATAGGA+GGG - chr1_1:76116631-76116650 Msa0044530:intron 30.0%
TAGATATTGTCCCATTTCTA+GGG - chr1_1:76116703-76116722 Msa0044530:intron 30.0%
! TGTAGAAATTGTCCCATTTT+TGG - chr1_1:76116946-76116965 Msa0044530:CDS 30.0%
!! GTAGAAATTGTCCCATTTTT+GGG - chr1_1:76116947-76116966 Msa0044530:CDS 30.0%
TTTCACTAACAAGATCAACA+GGG + chr1_1:76116982-76117001 None:intergenic 30.0%
ATTTCACTAACAAGATCAAC+AGG + chr1_1:76116983-76117002 None:intergenic 30.0%
TCTCTTTACTTAATCTAGAC+AGG - chr1_1:76117017-76117036 Msa0044530:CDS 30.0%
TTAATCTAGACAGGAAAACA+TGG - chr1_1:76117026-76117045 Msa0044530:CDS 30.0%
! ATCATACCTCAAGCATTTTT+AGG - chr1_1:76117127-76117146 Msa0044530:CDS 30.0%
TTACATCCTAAAAATGCTTG+AGG + chr1_1:76117136-76117155 None:intergenic 30.0%
! AAGATGCAGATTTTATGTTC+AGG - chr1_1:76117240-76117259 Msa0044530:five_prime_UTR 30.0%
! AGATGCAGATTTTATGTTCA+GGG - chr1_1:76117241-76117260 Msa0044530:five_prime_UTR 30.0%
AGAAATGTGAGGCTTGAAAT+TGG + chr1_1:76114436-76114455 None:intergenic 35.0%
TTGTGTGTTGAAGAAATGTG+AGG + chr1_1:76114447-76114466 None:intergenic 35.0%
! TGACCAAGAAACTATTTCTC+AGG - chr1_1:76114775-76114794 Msa0044530:three_prime_UTR 35.0%
GTACATGAATTTCAAGACCA+TGG + chr1_1:76114952-76114971 None:intergenic 35.0%
! ACTGAAATTGTGAGGTATTC+AGG + chr1_1:76114989-76115008 None:intergenic 35.0%
AACTAGAGACTGAAATTGTG+AGG + chr1_1:76114997-76115016 None:intergenic 35.0%
TGCACAGAAATTCCATCAAT+AGG + chr1_1:76115056-76115075 None:intergenic 35.0%
CTAATAGTTCAATGCCTCAA+TGG - chr1_1:76115195-76115214 Msa0044530:intron 35.0%
!! ATGGGTTTGACCTATTTTAG+TGG - chr1_1:76115308-76115327 Msa0044530:intron 35.0%
!! CTTTTTGGTCATGAAGTACA+AGG + chr1_1:76115408-76115427 None:intergenic 35.0%
AAGCATTTAGATGGCCATAA+TGG - chr1_1:76115539-76115558 Msa0044530:intron 35.0%
AGCATTTAGATGGCCATAAT+GGG - chr1_1:76115540-76115559 Msa0044530:intron 35.0%
TTCAACAAAGGCAAACATGA+AGG + chr1_1:76115609-76115628 None:intergenic 35.0%
CTTTAACCAATAGGAGATAG+TGG - chr1_1:76115725-76115744 Msa0044530:intron 35.0%
TTCTAACCACTATCTCCTAT+TGG + chr1_1:76115734-76115753 None:intergenic 35.0%
TTCTTATACTGCTAATCTGC+TGG - chr1_1:76116062-76116081 Msa0044530:intron 35.0%
! ACAAATGGTACTTCTAGTTG+TGG - chr1_1:76116185-76116204 Msa0044530:CDS 35.0%
! CAAATGGTACTTCTAGTTGT+GGG - chr1_1:76116186-76116205 Msa0044530:CDS 35.0%
!!! TACACCTTTGGAGTCAATTT+TGG + chr1_1:76116299-76116318 None:intergenic 35.0%
! TTGGCATGTTTGGATGTTTT+CGG - chr1_1:76116328-76116347 Msa0044530:CDS 35.0%
!! ATAGAATTGATTTTGCCTCC+AGG - chr1_1:76116351-76116370 Msa0044530:CDS 35.0%
!! ATTAAGTGTATTTGGCTCTG+CGG + chr1_1:76116529-76116548 None:intergenic 35.0%
!!! TTCCCTTTTCTATTTCTGCA+GGG - chr1_1:76116604-76116623 Msa0044530:intron 35.0%
TTCCCTGCAGAAATAGAAAA+GGG + chr1_1:76116609-76116628 None:intergenic 35.0%
GCTGTTGTTATAACAATAGG+AGG - chr1_1:76116630-76116649 Msa0044530:intron 35.0%
GTAGATATTGTCCCATTTCT+AGG - chr1_1:76116702-76116721 Msa0044530:intron 35.0%
CATAATCATCTCTCAGTTCT+TGG - chr1_1:76116758-76116777 Msa0044530:intron 35.0%
ATTTGCATGATCATGTCCAA+GGG - chr1_1:76116851-76116870 Msa0044530:CDS 35.0%
!! CCATGTTTGCTTTTGATACA+AGG + chr1_1:76117055-76117074 None:intergenic 35.0%
CCTTGTATCAAAAGCAAACA+TGG - chr1_1:76117052-76117071 Msa0044530:CDS 35.0%
! TTTTCAACCGACATCTCGAA+CGG + chr1_1:76114668-76114687 None:intergenic 40.0%
ACTGAAGCTGTTAGGTGTAT+CGG - chr1_1:76114691-76114710 Msa0044530:three_prime_UTR 40.0%
! AGAAGCAACGATGGAGTTTT+TGG + chr1_1:76114747-76114766 None:intergenic 40.0%
ATCTTTGCAAGAAGCAACGA+TGG + chr1_1:76114756-76114775 None:intergenic 40.0%
!!! ATGCTTGAGTTTTTTGCCCA+TGG - chr1_1:76114932-76114951 Msa0044530:CDS 40.0%
! TGAGGTATTCAGGACATCAA+GGG + chr1_1:76114979-76114998 None:intergenic 40.0%
!!! TTCTGTGCATTTTTAGGTCG+AGG - chr1_1:76115067-76115086 Msa0044530:intron 40.0%
! ATGACATGTTGCTTATGCAG+AGG - chr1_1:76115096-76115115 Msa0044530:intron 40.0%
TTATGCAGAGGTTAACTCAG+CGG - chr1_1:76115108-76115127 Msa0044530:intron 40.0%
!! AGGCATTGAACTATTAGCCT+GGG + chr1_1:76115192-76115211 None:intergenic 40.0%
TGAAACTGGTGCTTTCTTCA+TGG + chr1_1:76115231-76115250 None:intergenic 40.0%
GAAGGTGACTCAATTGAAAC+TGG + chr1_1:76115245-76115264 None:intergenic 40.0%
CGAAGAAGAGCCACTAAAAT+AGG + chr1_1:76115321-76115340 None:intergenic 40.0%
! ATTTAGATGGCCATAATGGG+TGG - chr1_1:76115543-76115562 Msa0044530:intron 40.0%
!! TTTAGATGGCCATAATGGGT+GGG - chr1_1:76115544-76115563 Msa0044530:intron 40.0%
TGAAGACACAAAGCAATGAG+TGG - chr1_1:76115807-76115826 Msa0044530:intron 40.0%
ATGAGTGGTATGAGTATGCA+AGG - chr1_1:76115822-76115841 Msa0044530:intron 40.0%
AATCTGCTGGATATTACTGC+TGG - chr1_1:76116075-76116094 Msa0044530:intron 40.0%
! AGAGCCAAAATTGACTCCAA+AGG - chr1_1:76116292-76116311 Msa0044530:CDS 40.0%
! GAAAAGGGAAGTGTAAAAGG+AGG + chr1_1:76116594-76116613 None:intergenic 40.0%
!!! CTTCCCTTTTCTATTTCTGC+AGG - chr1_1:76116603-76116622 Msa0044530:intron 40.0%
CTTCCCTGCAGAAATAGAAA+AGG + chr1_1:76116610-76116629 None:intergenic 40.0%
!!! CTTTTCTATTTCTGCAGGGA+AGG - chr1_1:76116608-76116627 Msa0044530:intron 40.0%
TCTTGGTTTCGCTATACCTA+AGG - chr1_1:76116775-76116794 Msa0044530:intron 40.0%
! CAAGTTTTCCTGTCTACCTT+AGG + chr1_1:76116794-76116813 None:intergenic 40.0%
CTAAGGTAGACAGGAAAACT+TGG - chr1_1:76116792-76116811 Msa0044530:intron 40.0%
CATTTGCATGATCATGTCCA+AGG - chr1_1:76116850-76116869 Msa0044530:CDS 40.0%
ACAGTGAAGGCTACTGTTAT+AGG - chr1_1:76116877-76116896 Msa0044530:CDS 40.0%
CAGTGAAGGCTACTGTTATA+GGG - chr1_1:76116878-76116897 Msa0044530:CDS 40.0%
AGTGAAGGCTACTGTTATAG+GGG - chr1_1:76116879-76116898 Msa0044530:CDS 40.0%
! TACTGTTATAGGGGTATAGC+TGG - chr1_1:76116888-76116907 Msa0044530:CDS 40.0%
!! ATTGTCCCATTTTTGGGCAT+AGG - chr1_1:76116953-76116972 Msa0044530:CDS 40.0%
GGAATCCTATGCCCAAAAAT+GGG + chr1_1:76116961-76116980 None:intergenic 40.0%
AAGATGAACCGGCAGAGATA+CGG + chr1_1:76114508-76114527 None:intergenic 45.0%
! TGGTCTTGGGAAAGATGAAC+CGG + chr1_1:76114519-76114538 None:intergenic 45.0%
GGTTTAACAAGACTGCGAAC+CGG + chr1_1:76114545-76114564 None:intergenic 45.0%
GAAAACGCACTGAAGCTGTT+AGG - chr1_1:76114683-76114702 Msa0044530:three_prime_UTR 45.0%
AAGCTGTTAGGTGTATCGGA+AGG - chr1_1:76114695-76114714 Msa0044530:three_prime_UTR 45.0%
GGCGCGAAGTATATCATCAA+AGG + chr1_1:76114726-76114745 None:intergenic 45.0%
! GAGGTATTCAGGACATCAAG+GGG + chr1_1:76114978-76114997 None:intergenic 45.0%
! GTGAGGTATTCAGGACATCA+AGG + chr1_1:76114980-76114999 None:intergenic 45.0%
TGTAAAACGTGTTCAGTCCC+AGG - chr1_1:76115172-76115191 Msa0044530:intron 45.0%
!! GAGGCATTGAACTATTAGCC+TGG + chr1_1:76115193-76115212 None:intergenic 45.0%
!! ATGGTGGATTGCATCCATTG+AGG + chr1_1:76115212-76115231 None:intergenic 45.0%
AACTGGTGCTTTCTTCATGG+TGG + chr1_1:76115228-76115247 None:intergenic 45.0%
TTGTAGACCAAGATCACTGG+TGG + chr1_1:76115267-76115286 None:intergenic 45.0%
AGCTTGTAGACCAAGATCAC+TGG + chr1_1:76115270-76115289 None:intergenic 45.0%
AGTGATCTTGGTCTACAAGC+TGG - chr1_1:76115269-76115288 Msa0044530:intron 45.0%
GGTCTACAAGCTGGAGTATA+TGG - chr1_1:76115278-76115297 Msa0044530:intron 45.0%
TGGAGTATATGGTGCACTGA+TGG - chr1_1:76115289-76115308 Msa0044530:intron 45.0%
! GGAGTATATGGTGCACTGAT+GGG - chr1_1:76115290-76115309 Msa0044530:intron 45.0%
TGATGTTCCGGGACTTATCT+TGG - chr1_1:76115364-76115383 Msa0044530:intron 45.0%
CTTATCTTGGCTGGTAGCTT+TGG - chr1_1:76115377-76115396 Msa0044530:intron 45.0%
TTGGTGCACTGTATGATGCA+AGG + chr1_1:76115879-76115898 None:intergenic 45.0%
!! TGCTGGTGTCTTTGAAGTGA+GGG - chr1_1:76116092-76116111 Msa0044530:intron 45.0%
! ATGGTACTTCTAGTTGTGGG+TGG - chr1_1:76116189-76116208 Msa0044530:CDS 45.0%
TAGGGTCAGTTGTAGAGAAC+TGG - chr1_1:76116673-76116692 Msa0044530:intron 45.0%
AGTTGTAGAGAACTGGTTGC+AGG - chr1_1:76116680-76116699 Msa0044530:intron 45.0%
TCGCTATACCTAAGGTAGAC+AGG - chr1_1:76116783-76116802 Msa0044530:intron 45.0%
GGGAATCCTATGCCCAAAAA+TGG + chr1_1:76116962-76116981 None:intergenic 45.0%
! GCAGATTTTATGTTCAGGGC+TGG - chr1_1:76117245-76117264 Msa0044530:five_prime_UTR 45.0%
ATCTTTCCCAAGACCACCAC+CGG - chr1_1:76114523-76114542 Msa0044530:three_prime_UTR 50.0%
TTAACAAGACTGCGAACCGG+TGG + chr1_1:76114542-76114561 None:intergenic 50.0%
TGCTTCCACCTTCTACGTAG+CGG + chr1_1:76114587-76114606 None:intergenic 50.0%
TCACCTTCCACCAGTGATCT+TGG - chr1_1:76115257-76115276 Msa0044530:intron 50.0%
AGACCAAGATCACTGGTGGA+AGG + chr1_1:76115263-76115282 None:intergenic 50.0%
TTATGCTGGGGCTGATGTTC+CGG - chr1_1:76115352-76115371 Msa0044530:intron 50.0%
CTACCAGCCAAGATAAGTCC+CGG + chr1_1:76115374-76115393 None:intergenic 50.0%
TCCTACTCTCCCACCCATTA+TGG + chr1_1:76115556-76115575 None:intergenic 50.0%
!! CTGCTGGTGTCTTTGAAGTG+AGG - chr1_1:76116091-76116110 Msa0044530:intron 50.0%
AACTGACCCTACAACAGCAC+CGG + chr1_1:76116664-76116683 None:intergenic 50.0%
! GGGAGCGTATCCCTAGAAAT+GGG + chr1_1:76116716-76116735 None:intergenic 50.0%
TTCGCTAACAACAGCAGCAG+GGG + chr1_1:76116736-76116755 None:intergenic 50.0%
CTTCGCTAACAACAGCAGCA+GGG + chr1_1:76116737-76116756 None:intergenic 50.0%
ACTTCGCTAACAACAGCAGC+AGG + chr1_1:76116738-76116757 None:intergenic 50.0%
TGTCCAAGGGTTGACAGTGA+AGG - chr1_1:76116864-76116883 Msa0044530:CDS 50.0%
TAGCCTTCACTGTCAACCCT+TGG + chr1_1:76116870-76116889 None:intergenic 50.0%
CCAGTTCTCTACAGCTGATG+CGG + chr1_1:76116922-76116941 None:intergenic 50.0%
TGAACCGGCAGAGATACGGT+CGG + chr1_1:76114504-76114523 None:intergenic 55.0%
CTCAGCACCGTTCGAGATGT+CGG - chr1_1:76114658-76114677 Msa0044530:three_prime_UTR 55.0%
TATGCTGGGGCTGATGTTCC+GGG - chr1_1:76115353-76115372 Msa0044530:intron 55.0%
GTTCCGGGACTTATCTTGGC+TGG - chr1_1:76115368-76115387 Msa0044530:intron 55.0%
!! GCCATAATGGGTGGGAGAGT+AGG - chr1_1:76115552-76115571 Msa0044530:intron 55.0%
ACAATAGGAGGGCTCGTAGC+CGG - chr1_1:76116642-76116661 Msa0044530:intron 55.0%
!! TCGTAGCCGGTGCTGTTGTA+GGG - chr1_1:76116655-76116674 Msa0044530:intron 55.0%
! GGGGAGCGTATCCCTAGAAA+TGG + chr1_1:76116717-76116736 None:intergenic 55.0%
CCGCATCAGCTGTAGAGAAC+TGG - chr1_1:76116919-76116938 Msa0044530:CDS 55.0%
GACGGGGATAGTAGCTGGTG+TGG + chr1_1:76114477-76114496 None:intergenic 60.0%
CACCAGCTACTATCCCCGTC+CGG - chr1_1:76114477-76114496 Msa0044530:three_prime_UTR 60.0%
AGAGATACGGTCGGACCGGA+CGG + chr1_1:76114495-76114514 None:intergenic 60.0%
! TGCGAACCGGTGGTGGTCTT+GGG + chr1_1:76114532-76114551 None:intergenic 60.0%
ACAAGACTGCGAACCGGTGG+TGG + chr1_1:76114539-76114558 None:intergenic 60.0%
AACCGATCCTCACCGAACCG+TGG - chr1_1:76114561-76114580 Msa0044530:three_prime_UTR 60.0%
TCTACGTAGCGGCCACGGTT+CGG + chr1_1:76114576-76114595 None:intergenic 60.0%
AACCGTGGCCGCTACGTAGA+AGG - chr1_1:76114576-76114595 Msa0044530:three_prime_UTR 60.0%
CACCTTCTACGTAGCGGCCA+CGG + chr1_1:76114581-76114600 None:intergenic 60.0%
!! GGTGGAAGCACTCGTCAACG+AGG - chr1_1:76114597-76114616 Msa0044530:three_prime_UTR 60.0%
! CACTCGTCAACGAGGAGCGT+GGG - chr1_1:76114605-76114624 Msa0044530:three_prime_UTR 60.0%
AGGTTAACTCAGCGGCGAGC+AGG - chr1_1:76115116-76115135 Msa0044530:intron 60.0%
AGCCCCAGCATAACCTGCAG+GGG + chr1_1:76115345-76115364 None:intergenic 60.0%
CAGCCCCAGCATAACCTGCA+GGG + chr1_1:76115346-76115365 None:intergenic 60.0%
TCAGCCCCAGCATAACCTGC+AGG + chr1_1:76115347-76115366 None:intergenic 60.0%
!! CTCGTAGCCGGTGCTGTTGT+AGG - chr1_1:76116654-76116673 Msa0044530:intron 60.0%
! TAGGGGTATAGCTGGCCCTG+TGG - chr1_1:76116896-76116915 Msa0044530:CDS 60.0%
CTACAGCTGATGCGGCCACA+GGG + chr1_1:76116914-76116933 None:intergenic 60.0%
TCTACAGCTGATGCGGCCAC+AGG + chr1_1:76116915-76116934 None:intergenic 60.0%
GACCGGACGGGGATAGTAGC+TGG + chr1_1:76114482-76114501 None:intergenic 65.0%
AGATACGGTCGGACCGGACG+GGG + chr1_1:76114493-76114512 None:intergenic 65.0%
GAGATACGGTCGGACCGGAC+GGG + chr1_1:76114494-76114513 None:intergenic 65.0%
CGGCAGAGATACGGTCGGAC+CGG + chr1_1:76114499-76114518 None:intergenic 65.0%
CGGTCCGACCGTATCTCTGC+CGG - chr1_1:76114497-76114516 Msa0044530:three_prime_UTR 65.0%
! CTGCGAACCGGTGGTGGTCT+TGG + chr1_1:76114533-76114552 None:intergenic 65.0%
!! GGCCACGGTTCGGTGAGGAT+CGG + chr1_1:76114566-76114585 None:intergenic 65.0%
CGTGGCCGCTACGTAGAAGG+TGG - chr1_1:76114579-76114598 Msa0044530:three_prime_UTR 65.0%
GCACTCGTCAACGAGGAGCG+TGG - chr1_1:76114604-76114623 Msa0044530:three_prime_UTR 65.0%
! GTCAACGAGGAGCGTGGGAC+CGG - chr1_1:76114610-76114629 Msa0044530:three_prime_UTR 65.0%
TCGCCCCCTGCAGGTTATGC+TGG - chr1_1:76115338-76115357 Msa0044530:intron 65.0%
CGCCCCCTGCAGGTTATGCT+GGG - chr1_1:76115339-76115358 Msa0044530:intron 65.0%
GCCCCCTGCAGGTTATGCTG+GGG - chr1_1:76115340-76115359 Msa0044530:intron 65.0%
GCCCCAGCATAACCTGCAGG+GGG + chr1_1:76115344-76115363 None:intergenic 65.0%
!! GTAGCGGCCACGGTTCGGTG+AGG + chr1_1:76114571-76114590 None:intergenic 70.0%
! GAGGAGCGTGGGACCGGTTC+AGG - chr1_1:76114616-76114635 Msa0044530:three_prime_UTR 70.0%
GCGCGCGAACTCGCCTGAAC+CGG + chr1_1:76114632-76114651 None:intergenic 70.0%
GGCTCTTCTTCGCCCCCTGC+AGG - chr1_1:76115329-76115348 Msa0044530:intron 70.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 76114338 76117275 76114338 ID=Msa0044530;Name=Msa0044530
chr1_1 mRNA 76114338 76117275 76114338 ID=Msa0044530-mRNA-1;Parent=Msa0044530;Name=Msa0044530-mRNA-1;_AED=0.01;_eAED=0.01;_QI=129|1|1|1|1|1|3|475|287
chr1_1 exon 76114338 76114988 76114338 ID=Msa0044530-mRNA-1:exon:25786;Parent=Msa0044530-mRNA-1
chr1_1 exon 76116173 76116530 76116173 ID=Msa0044530-mRNA-1:exon:25785;Parent=Msa0044530-mRNA-1
chr1_1 exon 76116817 76117275 76116817 ID=Msa0044530-mRNA-1:exon:25784;Parent=Msa0044530-mRNA-1
chr1_1 five_prime_UTR 76117147 76117275 76117147 ID=Msa0044530-mRNA-1:five_prime_utr;Parent=Msa0044530-mRNA-1
chr1_1 CDS 76116817 76117146 76116817 ID=Msa0044530-mRNA-1:cds;Parent=Msa0044530-mRNA-1
chr1_1 CDS 76116173 76116530 76116173 ID=Msa0044530-mRNA-1:cds;Parent=Msa0044530-mRNA-1
chr1_1 CDS 76114813 76114988 76114813 ID=Msa0044530-mRNA-1:cds;Parent=Msa0044530-mRNA-1
chr1_1 three_prime_UTR 76114338 76114812 76114338 ID=Msa0044530-mRNA-1:three_prime_utr;Parent=Msa0044530-mRNA-1
Gene Sequence

>Msa0044530

ATGGCTGCCACACCAGCTACTATCCCCGTCCGGTCCGACCGTATCTCTGCCGGTTCATCTTTCCCAAGACCACCACCGGTTCGCAGTCTTGTTAAACCGATCCTCACCGAACCGTGGCCGCTACGTAGAAGGTGGAAGCACTCGTCAACGAGGAGCGTGGGACCGGTTCAGGCGAGTTCGCGCGCAGATGACTCAGCACCGTTCGAGATGTCGGTTGAAAACGCACTGAAGCTGTTAGGTGTATCGGAAGGTGCTTCCTTTGATGATATACTTCGCGCCAAAAACTCCATCGTTGCTTCTTGCAAAGATGACCAAGAAACTATTTCTCAGGTCGAGGCTGCATATGACATGTTGCTTATGCAGAGGTTAACTCAGCGGCGAGCAGGAAAAGTAGTGAGCAGCAGTGTTCGTTATGCTGATGTAAAACGTGTTCAGTCCCAGGCTAATAGTTCAATGCCTCAATGGATGCAATCCACCATGAAGAAAGCACCAGTTTCAATTGAGTCACCTTCCACCAGTGATCTTGGTCTACAAGCTGGAGTATATGGTGCACTGATGGGTTTGACCTATTTTAGTGGCTCTTCTTCGCCCCCTGCAGGTTATGCTGGGGCTGATGTTCCGGGACTTATCTTGGCTGGTAGCTTTGGAGCTTCCTTGTACTTCATGACCAAAAAGAATGTTAAGTTAGGGAAGGCTGTTGTTATAACAATAGGAGGGCTCGTAGCCGGTGCTGTTGTAGGGTCAGTTGTAGAGAACTGGTTGCAGGTAGATATTGTCCCATTTCTAGGGATACGCTCCCCTGCTGCTGTTGTTAGCGAAGTCATAATCATCTCTCAGTTCTTGGTTTCGCTATACCTAAGGTAG

Protein sequence

>Msa0044530

MAATPATIPVRSDRISAGSSFPRPPPVRSLVKPILTEPWPLRRRWKHSSTRSVGPVQASSRADDSAPFEMSVENALKLLGVSEGASFDDILRAKNSIVASCKDDQETISQVEAAYDMLLMQRLTQRRAGKVVSSSVRYADVKRVQSQANSSMPQWMQSTMKKAPVSIESPSTSDLGLQAGVYGALMGLTYFSGSSSPPAGYAGADVPGLILAGSFGASLYFMTKKNVKLGKAVVITIGGLVAGAVVGSVVENWLQVDIVPFLGIRSPAAVVSEVIIISQFLVSLYLR*