AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0973080


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0973080 MtrunA17_Chr6g0451991 96.154 78 3 0 1 78 1 78 1.04e-46 150
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 81 sgRNAs with CRISPR-Local

Find 153 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGAATGGAGTTGTTTATTA+TGG 0.175343 6_4:+5410078 None:intergenic
TATTTCCTTCCTTCATTCAA+TGG 0.307492 6_4:-5411800 Msa0973080:exon
AGGGTTTACCCTCTTCTTCT+TGG 0.319817 6_4:+5411744 None:intergenic
ATCAAAGAAGAGCAACATAA+TGG 0.326174 6_4:+5409311 None:intergenic
CTCTTTCTTCGTTAAGTCCT+TGG 0.332998 6_4:+5409841 None:intergenic
AAGAACAAAGAAGGATAAAG+AGG 0.351121 6_4:+5411834 None:intergenic
TTCCTTCATTCAATGGCTCC+TGG 0.362277 6_4:-5411793 Msa0973080:exon
CTCCTGATTTCCTTGTATGA+TGG 0.367192 6_4:+5410146 None:intergenic
TGCATCCAAGCGAATGATTC+CGG 0.369607 6_4:-5410103 Msa0973080:exon
CGAGGCTGATGGACGATGTC+CGG 0.381759 6_4:-5409537 Msa0973080:three_prime_UTR
TAATCAATCGTATGCTCTAT+AGG 0.396032 6_4:+5409881 None:intergenic
AACCATCATACAAGGAAATC+AGG 0.402516 6_4:-5410148 Msa0973080:CDS
GGATGCGATGTTGACTCAAC+TGG 0.420478 6_4:-5410221 Msa0973080:CDS
GGAGTTGTTTATTATGGATC+CGG 0.422445 6_4:+5410084 None:intergenic
CTCTTCTTCTTGGAGGAGAA+AGG 0.450083 6_4:+5411754 None:intergenic
AAGATGGATGCCTTGATGAT+TGG 0.450875 6_4:-5409964 Msa0973080:three_prime_UTR
GTGATTATAACTACTTTGAA+TGG 0.452304 6_4:+5410063 None:intergenic
AGATGGATGCCTTGATGATT+GGG 0.456418 6_4:-5409963 Msa0973080:three_prime_UTR
CAGTCATGCCGTATGAGTAC+AGG 0.456682 6_4:-5409440 Msa0973080:three_prime_UTR
TCAAAGAAGAGCAACATAAT+GGG 0.468229 6_4:+5409312 None:intergenic
GGAGATCTCAATGAGGAAGA+TGG 0.470422 6_4:-5409980 Msa0973080:three_prime_UTR
GGAGAAAGGAGGGTCAGAAA+TGG 0.470846 6_4:+5411768 None:intergenic
GTTTACCCTCTTCTTCTTGG+AGG 0.476527 6_4:+5411747 None:intergenic
ACACGAACAAGGAAGAAATT+CGG 0.481896 6_4:+5409598 None:intergenic
TCTAAATCCTCGTAACAGAT+AGG 0.489191 6_4:+5409632 None:intergenic
AATCATGTAGATGAAAATGT+TGG 0.490500 6_4:-5409497 Msa0973080:three_prime_UTR
AAAGAAGGATAAAGAGGGAG+TGG 0.491378 6_4:+5411840 None:intergenic
CTCGCAATGTGCTTAGAAGA+TGG 0.498559 6_4:+5410182 None:intergenic
ACTTAACGAAGAAAGAGTTC+AGG 0.499489 6_4:-5409835 Msa0973080:three_prime_UTR
CCGTATGAGTACAGGGTGCT+AGG 0.509540 6_4:-5409432 Msa0973080:three_prime_UTR
GAATTTCTTCCTTGTTCGTG+TGG 0.516729 6_4:-5409596 Msa0973080:three_prime_UTR
TGGATCCGGAATCATTCGCT+TGG 0.519416 6_4:+5410098 None:intergenic
ACTCTCAGTTAAATTCAAAC+CGG 0.523325 6_4:-5409718 Msa0973080:three_prime_UTR
CACATATTAGCTGTCGAGCA+TGG 0.524731 6_4:-5409796 Msa0973080:three_prime_UTR
ACTGTTTGCGTTTAAAGCAT+CGG 0.537816 6_4:+5409931 None:intergenic
TATAGGAGACTCTGAAACCA+TGG 0.540448 6_4:+5409898 None:intergenic
GAGGCTGATGGACGATGTCC+GGG 0.541915 6_4:-5409536 Msa0973080:three_prime_UTR
CCTTGGACGAAGAGTGTCAT+CGG 0.543532 6_4:+5409769 None:intergenic
TTATGCGGCTTTGAGAGGTC+GGG 0.543577 6_4:+5409740 None:intergenic
TGCGTTTAAAGCATCGGCAA+CGG 0.544753 6_4:+5409937 None:intergenic
GAGAAAGAGAAGAACAAAGA+AGG 0.547326 6_4:+5411825 None:intergenic
GTTATGCGGCTTTGAGAGGT+CGG 0.547395 6_4:+5409739 None:intergenic
CGTTGATTCAGAAGCAGCCA+AGG 0.549296 6_4:-5409858 Msa0973080:three_prime_UTR
GAAATCAGGAGAAAAGAAAG+AGG 0.550285 6_4:-5410134 Msa0973080:CDS
GAGAGGTCGGGCAAACACCT+TGG 0.554629 6_4:+5409752 None:intergenic
AGAACAAAGAAGGATAAAGA+GGG 0.554653 6_4:+5411835 None:intergenic
ACAAAATTGTACCTTGGTCA+TGG 0.559149 6_4:-5409685 Msa0973080:three_prime_UTR
CTTGGACGAAGAGTGTCATC+GGG 0.563390 6_4:+5409770 None:intergenic
AACCAGGAGCCATTGAATGA+AGG 0.565572 6_4:+5411791 None:intergenic
TTCTAAGCACATTGCGAGCG+AGG 0.567304 6_4:-5410177 Msa0973080:CDS
TTCTTCTTGGAGGAGAAAGG+AGG 0.571919 6_4:+5411757 None:intergenic
GGAGGGTCAGAAATGGAACC+AGG 0.572536 6_4:+5411775 None:intergenic
CTTTCTCCTCCAAGAAGAAG+AGG 0.573316 6_4:-5411753 Msa0973080:CDS
CAACGGCCTCCCAATCATCA+AGG 0.573927 6_4:+5409954 None:intergenic
GAGAGTTATGCGGCTTTGAG+AGG 0.580285 6_4:+5409735 None:intergenic
CCTAGCACCCTGTACTCATA+CGG 0.584262 6_4:+5409432 None:intergenic
AAACAGTAACGAGCATTCCA+TGG 0.585443 6_4:-5409915 Msa0973080:three_prime_UTR
TCAGGAGAAAAGAAAGAGGA+TGG 0.588494 6_4:-5410130 Msa0973080:CDS
GTTATAATCACGATGAGTCA+AGG 0.589115 6_4:-5410051 Msa0973080:three_prime_UTR
AGATGAAATCCACACGAACA+AGG 0.589677 6_4:+5409587 None:intergenic
AATCACGATGAGTCAAGGAA+TGG 0.591635 6_4:-5410046 Msa0973080:three_prime_UTR
TTGATGTTAGGCGCGAACAA+TGG 0.600363 6_4:-5411267 Msa0973080:CDS
GGAGAATCAACCATCATACA+AGG 0.605659 6_4:-5410156 Msa0973080:CDS
AAGAAGAGCAACATAATGGG+AGG 0.606227 6_4:+5409315 None:intergenic
AGCAAATCAAGCTTGATGTT+AGG 0.609219 6_4:-5411279 Msa0973080:CDS
GCGATGTTGACTCAACTGGA+AGG 0.610065 6_4:-5410217 Msa0973080:CDS
TCTTCTTGGAGGAGAAAGGA+GGG 0.611617 6_4:+5411758 None:intergenic
CGCGAACAATGGCTTTCTAG+AGG 0.612582 6_4:-5411256 Msa0973080:intron
AGTCATGCCGTATGAGTACA+GGG 0.616497 6_4:-5409439 Msa0973080:three_prime_UTR
GTAACCACAAAATTGTACCT+TGG 0.617000 6_4:-5409691 Msa0973080:three_prime_UTR
AGGAGCCATTGAATGAAGGA+AGG 0.621016 6_4:+5411795 None:intergenic
TTTCTCCTCCAAGAAGAAGA+GGG 0.628934 6_4:-5411752 Msa0973080:intron
GAATTTAACTGAGAGTTATG+CGG 0.630591 6_4:+5409725 None:intergenic
TTCCTCATTGAGATCTCCTG+AGG 0.639616 6_4:+5409985 None:intergenic
AGAAGAGCAACATAATGGGA+GGG 0.640118 6_4:+5409316 None:intergenic
ATTATTGTTCTCCATGACCA+AGG 0.651182 6_4:+5409674 None:intergenic
TAACAGATAGGACATTGACT+AGG 0.694474 6_4:+5409644 None:intergenic
CGATGTTGACTCAACTGGAA+GGG 0.705315 6_4:-5410216 Msa0973080:CDS
TGGATGCCTTGATGATTGGG+AGG 0.706476 6_4:-5409960 Msa0973080:three_prime_UTR
TCAATGTCCTATCTGTTACG+AGG 0.710111 6_4:-5409639 Msa0973080:three_prime_UTR
TTCCTCAGGAGATCTCAATG+AGG 0.718693 6_4:-5409987 Msa0973080:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTAAAAAAAAATTCAATGA+TGG - chr6_4:5410922-5410941 Msa0973080:intron 10.0%
!! ATAAAAAATAAAAAGGAGAA+GGG + chr6_4:5409517-5409536 None:intergenic 15.0%
!! AATAAAAAATAAAAAGGAGA+AGG + chr6_4:5409518-5409537 None:intergenic 15.0%
!!! TCATTCTGTTATTTATATAA+GGG - chr6_4:5410124-5410143 Msa0973080:CDS 15.0%
!! TTAAAAAATATAATAGCGAA+TGG + chr6_4:5410230-5410249 None:intergenic 15.0%
!!! TTAAAGATATTGTTTTTCAA+TGG - chr6_4:5410868-5410887 Msa0973080:intron 15.0%
!!! ATCAAATTTTTATAGCTCAA+GGG + chr6_4:5409572-5409591 None:intergenic 20.0%
!!! AATCAAATTTTTATAGCTCA+AGG + chr6_4:5409573-5409592 None:intergenic 20.0%
!!! AATCTTCATTTTTTATGTCA+TGG - chr6_4:5409740-5409759 Msa0973080:three_prime_UTR 20.0%
!! AACATTATGAATGTCATAAA+AGG + chr6_4:5409815-5409834 None:intergenic 20.0%
!!! ATTCATAATGTTTTTCTCTA+AGG - chr6_4:5409823-5409842 Msa0973080:three_prime_UTR 20.0%
!! CAAAGAAAAACATAATCAAT+AGG + chr6_4:5410047-5410066 None:intergenic 20.0%
!! GAGAAAAAAAAACTTATCAT+TGG + chr6_4:5410079-5410098 None:intergenic 20.0%
!!! GTCATTCTGTTATTTATATA+AGG - chr6_4:5410123-5410142 Msa0973080:CDS 20.0%
!! CATTATATACCAAAATGATT+AGG - chr6_4:5410273-5410292 Msa0973080:intron 20.0%
!! TATGAAAATAACTTATAGCT+TGG - chr6_4:5410629-5410648 Msa0973080:intron 20.0%
!!! TTTTGTTTTTCAGTCAAAAA+GGG - chr6_4:5410997-5411016 Msa0973080:intron 20.0%
! AATGCAATGAAATGGAAAAT+GGG + chr6_4:5409655-5409674 None:intergenic 25.0%
! AAATGCAATGAAATGGAAAA+TGG + chr6_4:5409656-5409675 None:intergenic 25.0%
! CAAAACAAAATGCAATGAAA+TGG + chr6_4:5409663-5409682 None:intergenic 25.0%
!!! TTTTGTTTTGTTGAGTTCAA+AGG - chr6_4:5409673-5409692 Msa0973080:three_prime_UTR 25.0%
!!! TTTGTTTTGTTGAGTTCAAA+GGG - chr6_4:5409674-5409693 Msa0973080:three_prime_UTR 25.0%
!!! ATGTCATGGTTTTATCATAA+AGG - chr6_4:5409754-5409773 Msa0973080:three_prime_UTR 25.0%
!!! TTGCTTTGTTTTTGATGTTT+TGG - chr6_4:5409862-5409881 Msa0973080:three_prime_UTR 25.0%
!! TGGAAATTTTCATTATGTCA+TGG - chr6_4:5409882-5409901 Msa0973080:three_prime_UTR 25.0%
!! TTTTCATTATGTCATGGTTT+TGG - chr6_4:5409888-5409907 Msa0973080:three_prime_UTR 25.0%
!! ATTGTGAATTTTCAGACTAA+TGG - chr6_4:5409923-5409942 Msa0973080:three_prime_UTR 25.0%
!!! TTATGATCGTCATTTTCATA+TGG - chr6_4:5410011-5410030 Msa0973080:three_prime_UTR 25.0%
!!! TCATTTTGGTATATAATGCA+AGG + chr6_4:5410271-5410290 None:intergenic 25.0%
!! AATTAAAGGCCTAATCATTT+TGG + chr6_4:5410285-5410304 None:intergenic 25.0%
!!! CACATGTTGATTTCAATTAA+AGG + chr6_4:5410299-5410318 None:intergenic 25.0%
!!! ATCATTGATTCCGAATTTTT+AGG - chr6_4:5410445-5410464 Msa0973080:intron 25.0%
!!! ATTCCGAATTTTTAGGTTTT+AGG - chr6_4:5410452-5410471 Msa0973080:intron 25.0%
!! TGCATAAACATTTGTCTTTT+AGG - chr6_4:5410509-5410528 Msa0973080:intron 25.0%
!! GCATAAACATTTGTCTTTTA+GGG - chr6_4:5410510-5410529 Msa0973080:intron 25.0%
!! ATTGACTTAAAGAGAGTTTA+TGG - chr6_4:5410542-5410561 Msa0973080:intron 25.0%
! TTATACTGTTTATCCAAACA+AGG - chr6_4:5410744-5410763 Msa0973080:intron 25.0%
!!! CTTTTGTTTTTCAGTCAAAA+AGG - chr6_4:5410996-5411015 Msa0973080:intron 25.0%
! TTGAATGGAGTTGTTTATTA+TGG + chr6_4:5411164-5411183 None:intergenic 25.0%
! GTGATTATAACTACTTTGAA+TGG + chr6_4:5411179-5411198 None:intergenic 25.0%
! AATCATGTAGATGAAAATGT+TGG - chr6_4:5411742-5411761 Msa0973080:intron 25.0%
AGAACAAAGAAGGATAAAGA+GGG + chr6_4:5409407-5409426 None:intergenic 30.0%
AAGAACAAAGAAGGATAAAG+AGG + chr6_4:5409408-5409427 None:intergenic 30.0%
TATTTCCTTCCTTCATTCAA+TGG - chr6_4:5409439-5409458 Msa0973080:three_prime_UTR 30.0%
GGAAATGCAATGCAATATAA+TGG + chr6_4:5409794-5409813 None:intergenic 30.0%
!!! TCATGGTTTTGGTTATCTTA+TGG - chr6_4:5409899-5409918 Msa0973080:three_prime_UTR 30.0%
TATAATAGCGAATGGATCAA+AGG + chr6_4:5410222-5410241 None:intergenic 30.0%
AAAATAAGTCGATCCAAACA+GGG + chr6_4:5410478-5410497 None:intergenic 30.0%
TAAAATAAGTCGATCCAAAC+AGG + chr6_4:5410479-5410498 None:intergenic 30.0%
ATTTGACTGTTATTGCAGTA+AGG + chr6_4:5410770-5410789 None:intergenic 30.0%
TAATCAATCGTATGCTCTAT+AGG + chr6_4:5411361-5411380 None:intergenic 30.0%
GAATTTAACTGAGAGTTATG+CGG + chr6_4:5411517-5411536 None:intergenic 30.0%
ACTCTCAGTTAAATTCAAAC+CGG - chr6_4:5411521-5411540 Msa0973080:intron 30.0%
! CGATCTTTTTGTGACAAAAA+AGG + chr6_4:5411681-5411700 None:intergenic 30.0%
! TTATATAGTTTTCTGCATCC+CGG + chr6_4:5411724-5411743 None:intergenic 30.0%
TCAAAGAAGAGCAACATAAT+GGG + chr6_4:5411930-5411949 None:intergenic 30.0%
ATCAAAGAAGAGCAACATAA+TGG + chr6_4:5411931-5411950 None:intergenic 30.0%
GAGAAAGAGAAGAACAAAGA+AGG + chr6_4:5409417-5409436 None:intergenic 35.0%
! GAATTTTCAGACTAATGGCT+CGG - chr6_4:5409928-5409947 Msa0973080:three_prime_UTR 35.0%
AGCAAATCAAGCTTGATGTT+AGG - chr6_4:5409960-5409979 Msa0973080:three_prime_UTR 35.0%
! AAGCTTAGCTTAGTTAGTCT+TGG - chr6_4:5410369-5410388 Msa0973080:intron 35.0%
GGGCCTAAAACCTAAAAATT+CGG + chr6_4:5410458-5410477 None:intergenic 35.0%
CTCTTTAAGTCAATCCAAAC+AGG + chr6_4:5410536-5410555 None:intergenic 35.0%
!! GTTATTTTCATAAGCTGTCC+TGG + chr6_4:5410621-5410640 None:intergenic 35.0%
! TCAATGATGGTTTTCGAAGT+TGG - chr6_4:5410935-5410954 Msa0973080:intron 35.0%
AACCATCATACAAGGAAATC+AGG - chr6_4:5411091-5411110 Msa0973080:intron 35.0%
GAAATCAGGAGAAAAGAAAG+AGG - chr6_4:5411105-5411124 Msa0973080:intron 35.0%
GGAGTTGTTTATTATGGATC+CGG + chr6_4:5411158-5411177 None:intergenic 35.0%
GTTATAATCACGATGAGTCA+AGG - chr6_4:5411188-5411207 Msa0973080:intron 35.0%
!!! GAGTCAAGGAATGGTTTTAA+CGG - chr6_4:5411202-5411221 Msa0973080:intron 35.0%
! ACTGTTTGCGTTTAAAGCAT+CGG + chr6_4:5411311-5411330 None:intergenic 35.0%
ACTTAACGAAGAAAGAGTTC+AGG - chr6_4:5411404-5411423 Msa0973080:intron 35.0%
GTAACCACAAAATTGTACCT+TGG - chr6_4:5411548-5411567 Msa0973080:intron 35.0%
! ATGACCAAGGTACAATTTTG+TGG + chr6_4:5411555-5411574 None:intergenic 35.0%
ACAAAATTGTACCTTGGTCA+TGG - chr6_4:5411554-5411573 Msa0973080:intron 35.0%
ATTATTGTTCTCCATGACCA+AGG + chr6_4:5411568-5411587 None:intergenic 35.0%
! TAACAGATAGGACATTGACT+AGG + chr6_4:5411598-5411617 None:intergenic 35.0%
TCTAAATCCTCGTAACAGAT+AGG + chr6_4:5411610-5411629 None:intergenic 35.0%
ACACGAACAAGGAAGAAATT+CGG + chr6_4:5411644-5411663 None:intergenic 35.0%
AAAGAAGGATAAAGAGGGAG+TGG + chr6_4:5409402-5409421 None:intergenic 40.0%
TTTCTCCTCCAAGAAGAAGA+GGG - chr6_4:5409487-5409506 Msa0973080:three_prime_UTR 40.0%
!! TTAGCTTAGTTAGTCTTGGC+AGG - chr6_4:5410373-5410392 Msa0973080:intron 40.0%
!! TAGCTTAGTTAGTCTTGGCA+GGG - chr6_4:5410374-5410393 Msa0973080:intron 40.0%
!!! TTTAGGTTTTAGGCCCTGTT+TGG - chr6_4:5410462-5410481 Msa0973080:intron 40.0%
!!! TTTGTCTTTTAGGGCCTGTT+TGG - chr6_4:5410519-5410538 Msa0973080:intron 40.0%
CTTACTTCCAAAAGATCTCC+AGG - chr6_4:5410600-5410619 Msa0973080:intron 40.0%
!! TATTGCAGTAAGGCCTTGTT+TGG + chr6_4:5410760-5410779 None:intergenic 40.0%
! CAAATCTTTTCCTCGCTAGA+CGG - chr6_4:5410785-5410804 Msa0973080:intron 40.0%
! AAATCTTTTCCTCGCTAGAC+GGG - chr6_4:5410786-5410805 Msa0973080:intron 40.0%
TAGAAGCTGTTTGATCAGCA+TGG + chr6_4:5410817-5410836 None:intergenic 40.0%
GGAGAATCAACCATCATACA+AGG - chr6_4:5411083-5411102 Msa0973080:intron 40.0%
CTCCTGATTTCCTTGTATGA+TGG + chr6_4:5411096-5411115 None:intergenic 40.0%
TCAGGAGAAAAGAAAGAGGA+TGG - chr6_4:5411109-5411128 Msa0973080:intron 40.0%
AATCACGATGAGTCAAGGAA+TGG - chr6_4:5411193-5411212 Msa0973080:intron 40.0%
!! AGTAAGAGTACGTTTTCCTC+AGG - chr6_4:5411238-5411257 Msa0973080:intron 40.0%
! AAGATGGATGCCTTGATGAT+TGG - chr6_4:5411275-5411294 Msa0973080:CDS 40.0%
! AGATGGATGCCTTGATGATT+GGG - chr6_4:5411276-5411295 Msa0973080:CDS 40.0%
AAACAGTAACGAGCATTCCA+TGG - chr6_4:5411324-5411343 Msa0973080:intron 40.0%
!! TATAGGAGACTCTGAAACCA+TGG + chr6_4:5411344-5411363 None:intergenic 40.0%
CTCTTTCTTCGTTAAGTCCT+TGG + chr6_4:5411401-5411420 None:intergenic 40.0%
! CAATTTTGTGGTTACTGTGC+CGG + chr6_4:5411543-5411562 None:intergenic 40.0%
TCAATGTCCTATCTGTTACG+AGG - chr6_4:5411600-5411619 Msa0973080:intron 40.0%
GAATTTCTTCCTTGTTCGTG+TGG - chr6_4:5411643-5411662 Msa0973080:intron 40.0%
AGATGAAATCCACACGAACA+AGG + chr6_4:5411655-5411674 None:intergenic 40.0%
TTGTCACAAAAAGATCGTCG+AGG - chr6_4:5411684-5411703 Msa0973080:intron 40.0%
! AGAAGAGCAACATAATGGGA+GGG + chr6_4:5411926-5411945 None:intergenic 40.0%
! AAGAAGAGCAACATAATGGG+AGG + chr6_4:5411927-5411946 None:intergenic 40.0%
AGGAGCCATTGAATGAAGGA+AGG + chr6_4:5409447-5409466 None:intergenic 45.0%
TTCCTTCATTCAATGGCTCC+TGG - chr6_4:5409446-5409465 Msa0973080:three_prime_UTR 45.0%
AACCAGGAGCCATTGAATGA+AGG + chr6_4:5409451-5409470 None:intergenic 45.0%
TCTTCTTGGAGGAGAAAGGA+GGG + chr6_4:5409484-5409503 None:intergenic 45.0%
TTCTTCTTGGAGGAGAAAGG+AGG + chr6_4:5409485-5409504 None:intergenic 45.0%
CTCTTCTTCTTGGAGGAGAA+AGG + chr6_4:5409488-5409507 None:intergenic 45.0%
CTTTCTCCTCCAAGAAGAAG+AGG - chr6_4:5409486-5409505 Msa0973080:three_prime_UTR 45.0%
GTTTACCCTCTTCTTCTTGG+AGG + chr6_4:5409495-5409514 None:intergenic 45.0%
AGGGTTTACCCTCTTCTTCT+TGG + chr6_4:5409498-5409517 None:intergenic 45.0%
TTGATGTTAGGCGCGAACAA+TGG - chr6_4:5409972-5409991 Msa0973080:three_prime_UTR 45.0%
! AAGCTGTCCTGGAGATCTTT+TGG + chr6_4:5410610-5410629 None:intergenic 45.0%
!! CGATGTTGACTCAACTGGAA+GGG - chr6_4:5411023-5411042 Msa0973080:intron 45.0%
CTCGCAATGTGCTTAGAAGA+TGG + chr6_4:5411060-5411079 None:intergenic 45.0%
TGCATCCAAGCGAATGATTC+CGG - chr6_4:5411136-5411155 Msa0973080:intron 45.0%
TTCCTCAGGAGATCTCAATG+AGG - chr6_4:5411252-5411271 Msa0973080:intron 45.0%
TTCCTCATTGAGATCTCCTG+AGG + chr6_4:5411257-5411276 None:intergenic 45.0%
GGAGATCTCAATGAGGAAGA+TGG - chr6_4:5411259-5411278 Msa0973080:CDS 45.0%
!! TGCGTTTAAAGCATCGGCAA+CGG + chr6_4:5411305-5411324 None:intergenic 45.0%
CACATATTAGCTGTCGAGCA+TGG - chr6_4:5411443-5411462 Msa0973080:intron 45.0%
AAAAAGATCGTCGAGGCTGA+TGG - chr6_4:5411691-5411710 Msa0973080:intron 45.0%
AGTCATGCCGTATGAGTACA+GGG - chr6_4:5411800-5411819 Msa0973080:exon 45.0%
!! AAAATGAATAAAAAATAAAA+AGG + chr6_4:5409524-5409543 None:intergenic 5.0%
GGAGAAAGGAGGGTCAGAAA+TGG + chr6_4:5409474-5409493 None:intergenic 50.0%
CGCGAACAATGGCTTTCTAG+AGG - chr6_4:5409983-5410002 Msa0973080:three_prime_UTR 50.0%
!! AGTTAGTCTTGGCAGGGACA+TGG - chr6_4:5410380-5410399 Msa0973080:intron 50.0%
!! GGATGCGATGTTGACTCAAC+TGG - chr6_4:5411018-5411037 Msa0973080:intron 50.0%
!! GCGATGTTGACTCAACTGGA+AGG - chr6_4:5411022-5411041 Msa0973080:intron 50.0%
TTCTAAGCACATTGCGAGCG+AGG - chr6_4:5411062-5411081 Msa0973080:intron 50.0%
TGGATCCGGAATCATTCGCT+TGG + chr6_4:5411144-5411163 None:intergenic 50.0%
! TGGATGCCTTGATGATTGGG+AGG - chr6_4:5411279-5411298 Msa0973080:CDS 50.0%
!! CGTTGATTCAGAAGCAGCCA+AGG - chr6_4:5411381-5411400 Msa0973080:intron 50.0%
!! CTTGGACGAAGAGTGTCATC+GGG + chr6_4:5411472-5411491 None:intergenic 50.0%
!! CCTTGGACGAAGAGTGTCAT+CGG + chr6_4:5411473-5411492 None:intergenic 50.0%
!! TTATGCGGCTTTGAGAGGTC+GGG + chr6_4:5411502-5411521 None:intergenic 50.0%
!! GTTATGCGGCTTTGAGAGGT+CGG + chr6_4:5411503-5411522 None:intergenic 50.0%
!! GAGAGTTATGCGGCTTTGAG+AGG + chr6_4:5411507-5411526 None:intergenic 50.0%
CAGTCATGCCGTATGAGTAC+AGG - chr6_4:5411799-5411818 Msa0973080:exon 50.0%
CCTAGCACCCTGTACTCATA+CGG + chr6_4:5411810-5411829 None:intergenic 50.0%
GGAGGGTCAGAAATGGAACC+AGG + chr6_4:5409467-5409486 None:intergenic 55.0%
ATGGCTAATCCCGTCTAGCG+AGG + chr6_4:5410798-5410817 None:intergenic 55.0%
CAACGGCCTCCCAATCATCA+AGG + chr6_4:5411288-5411307 None:intergenic 55.0%
CCGATGACACTCTTCGTCCA+AGG - chr6_4:5411470-5411489 Msa0973080:intron 55.0%
! CCGTATGAGTACAGGGTGCT+AGG - chr6_4:5411807-5411826 Msa0973080:five_prime_UTR 55.0%
GAGAGGTCGGGCAAACACCT+TGG + chr6_4:5411490-5411509 None:intergenic 60.0%
! CGAGGCTGATGGACGATGTC+CGG - chr6_4:5411702-5411721 Msa0973080:intron 60.0%
! GAGGCTGATGGACGATGTCC+GGG - chr6_4:5411703-5411722 Msa0973080:intron 60.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 5409310 5411951 5409310 ID=Msa0973080;Name=Msa0973080
chr6_4 mRNA 5409310 5411951 5409310 ID=Msa0973080-mRNA-1;Parent=Msa0973080;Name=Msa0973080-mRNA-1;_AED=0.00;_eAED=0.00;_QI=148|1|1|1|1|1|3|799|86
chr6_4 exon 5409310 5410251 5409310 ID=Msa0973080-mRNA-1:exon:2318;Parent=Msa0973080-mRNA-1
chr6_4 exon 5411257 5411323 5411257 ID=Msa0973080-mRNA-1:exon:2317;Parent=Msa0973080-mRNA-1
chr6_4 exon 5411753 5411951 5411753 ID=Msa0973080-mRNA-1:exon:2316;Parent=Msa0973080-mRNA-1
chr6_4 five_prime_UTR 5411804 5411951 5411804 ID=Msa0973080-mRNA-1:five_prime_utr;Parent=Msa0973080-mRNA-1
chr6_4 CDS 5411753 5411803 5411753 ID=Msa0973080-mRNA-1:cds;Parent=Msa0973080-mRNA-1
chr6_4 CDS 5411257 5411323 5411257 ID=Msa0973080-mRNA-1:cds;Parent=Msa0973080-mRNA-1
chr6_4 CDS 5410109 5410251 5410109 ID=Msa0973080-mRNA-1:cds;Parent=Msa0973080-mRNA-1
chr6_4 three_prime_UTR 5409310 5410108 5409310 ID=Msa0973080-mRNA-1:three_prime_utr;Parent=Msa0973080-mRNA-1
Gene Sequence

>Msa0973080

ATGGCTCCTGGTTCCATTTCTGACCCTCCTTTCTCCTCCAAGAAGAAGAGGACTAATGGCTCGGCGAAACTGAAGCAAATCAAGCTTGATGTTAGGCGCGAACAATGGCTTTCTAGAGTCAAAAAGGGATGCGATGTTGACTCAACTGGAAGGGTTGATAGTGATCCATCTTCTAAGCACATTGCGAGCGAGGAGAATCAACCATCATACAAGGAAATCAGGAGAAAAGAAAGAGGATGGTACATGCATCCAAGCGAATGA

Protein sequence

>Msa0973080

MAPGSISDPPFSSKKKRTNGSAKLKQIKLDVRREQWLSRVKKGCDVDSTGRVDSDPSSKHIASEENQPSYKEIRRKERGWYMHPSE*