Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0161480 | XP_013467691.1 | 95.066 | 304 | 5 | 4 | 1 | 302 | 1 | 296 | 0.0 | 574 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0161480 | sp|P46665|HAT14_ARATH | 51.543 | 324 | 81 | 9 | 1 | 267 | 1 | 305 | 1.57e-86 | 265 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0161480 | A0A072VJV2 | 95.066 | 304 | 5 | 4 | 1 | 302 | 1 | 296 | 0.0 | 574 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0161480 | TF | HB-HD-ZIP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0033220 | Msa0161480 | 0.827211 | 1.772955e-54 | -8.615850e-47 |
| Msa0063940 | Msa0161480 | 0.801121 | 1.045286e-48 | -8.615850e-47 |
| Msa0079880 | Msa0161480 | 0.830569 | 2.727434e-55 | -8.615850e-47 |
| Msa0080030 | Msa0161480 | 0.841881 | 3.631599e-58 | -8.615850e-47 |
| Msa0142430 | Msa0161480 | 0.805748 | 1.149432e-49 | -8.615850e-47 |
| Msa0161480 | Msa0164170 | 0.841675 | 4.114382e-58 | -8.615850e-47 |
| Msa0161480 | Msa0165640 | 0.834058 | 3.733481e-56 | -8.615850e-47 |
| Msa0161480 | Msa0183310 | -0.802354 | 5.836802e-49 | -8.615850e-47 |
| Msa0161480 | Msa0219280 | 0.800077 | 1.707090e-48 | -8.615850e-47 |
| Msa0161480 | Msa0221460 | -0.803315 | 3.697122e-49 | -8.615850e-47 |
| Msa0161480 | Msa0267510 | -0.801719 | 7.886275e-49 | -8.615850e-47 |
| Msa0161480 | Msa0269220 | -0.800552 | 1.366255e-48 | -8.615850e-47 |
| Msa0161480 | Msa0298400 | 0.802542 | 5.340679e-49 | -8.615850e-47 |
| Msa0161480 | Msa0300670 | -0.807244 | 5.556922e-50 | -8.615850e-47 |
| Msa0161480 | Msa0336120 | 0.805422 | 1.345011e-49 | -8.615850e-47 |
| Msa0161480 | Msa0337760 | -0.801272 | 9.737010e-49 | -8.615850e-47 |
| Msa0161480 | Msa0355080 | -0.812703 | 3.710567e-51 | -8.615850e-47 |
| Msa0161480 | Msa0384590 | 0.810456 | 1.142346e-50 | -8.615850e-47 |
| Msa0161480 | Msa0437440 | -0.811127 | 8.177488e-51 | -8.615850e-47 |
| Msa0161480 | Msa0450330 | -0.803296 | 3.729475e-49 | -8.615850e-47 |
| Msa0161480 | Msa0522540 | 0.804081 | 2.563683e-49 | -8.615850e-47 |
| Msa0161480 | Msa0579080 | 0.827411 | 1.588057e-54 | -8.615850e-47 |
| Msa0161480 | Msa0579160 | 0.821604 | 3.696253e-53 | -8.615850e-47 |
| Msa0161480 | Msa0579220 | 0.824475 | 7.912646e-54 | -8.615850e-47 |
| Msa0161480 | Msa0610690 | 0.817534 | 3.136796e-52 | -8.615850e-47 |
| Msa0161480 | Msa0719270 | 0.824324 | 8.586118e-54 | -8.615850e-47 |
| Msa0161480 | Msa0726170 | -0.821154 | 4.694444e-53 | -8.615850e-47 |
| Msa0161480 | Msa0745140 | 0.822017 | 2.965863e-53 | -8.615850e-47 |
| Msa0161480 | Msa0776640 | 0.827771 | 1.301127e-54 | -8.615850e-47 |
| Msa0161480 | Msa0795750 | 0.820857 | 5.496136e-53 | -8.615850e-47 |
| Msa0161480 | Msa0811690 | 0.807541 | 4.805833e-50 | -8.615850e-47 |
| Msa0161480 | Msa0825920 | 0.819396 | 1.187233e-52 | -8.615850e-47 |
| Msa0161480 | Msa0840520 | 0.839148 | 1.883986e-57 | -8.615850e-47 |
| Msa0161480 | Msa0851850 | 0.811970 | 5.362793e-51 | -8.615850e-47 |
| Msa0161480 | Msa0865420 | 0.818848 | 1.582471e-52 | -8.615850e-47 |
| Msa0161480 | Msa1032470 | 0.816562 | 5.186845e-52 | -8.615850e-47 |
| Msa0161480 | Msa1039440 | -0.806093 | 9.722538e-50 | -8.615850e-47 |
| Msa0161480 | Msa1044250 | 0.810224 | 1.281879e-50 | -8.615850e-47 |
| Msa0161480 | Msa1057620 | -0.807032 | 6.161140e-50 | -8.615850e-47 |
| Msa0161480 | Msa1082410 | 0.810533 | 1.099248e-50 | -8.615850e-47 |
| Msa0161480 | Msa1102060 | -0.800048 | 1.729844e-48 | -8.615850e-47 |
| Msa0161480 | Msa1165460 | 0.813799 | 2.131314e-51 | -8.615850e-47 |
| Msa0161480 | Msa1197720 | 0.821362 | 4.203157e-53 | -8.615850e-47 |
| Msa0161480 | Msa1251410 | 0.815170 | 1.060216e-51 | -8.615850e-47 |
| Msa0161480 | Msa1352600 | -0.802060 | 6.712043e-49 | -8.615850e-47 |
| Msa0161480 | Msa1391500 | 0.813572 | 2.391390e-51 | -8.615850e-47 |
| Msa0161480 | Msa1396200 | -0.835727 | 1.418253e-56 | -8.615850e-47 |
| Msa0161480 | Msa1422860 | 0.812846 | 3.452180e-51 | -8.615850e-47 |
| Msa0161480 | Msa1436620 | 0.837705 | 4.440678e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0161480 | MtrunA17_Chr1g0175651 | 95.066 | 304 | 5 | 4 | 1 | 302 | 1 | 296 | 0.0 | 574 |
| Msa0161480 | MtrunA17_Chr7g0258831 | 68.000 | 275 | 76 | 7 | 1 | 265 | 1 | 273 | 1.89e-117 | 340 |
| Msa0161480 | MtrunA17_Chr2g0308611 | 51.479 | 338 | 92 | 10 | 1 | 278 | 1 | 326 | 4.06e-80 | 246 |
| Msa0161480 | MtrunA17_Chr4g0055851 | 59.535 | 215 | 66 | 5 | 81 | 291 | 57 | 254 | 2.58e-74 | 229 |
| Msa0161480 | MtrunA17_Chr5g0399491 | 62.564 | 195 | 50 | 5 | 81 | 266 | 71 | 251 | 1.76e-71 | 223 |
| Msa0161480 | MtrunA17_Chr4g0054421 | 79.070 | 129 | 25 | 1 | 138 | 264 | 111 | 239 | 1.53e-68 | 214 |
| Msa0161480 | MtrunA17_Chr8g0335131 | 62.162 | 185 | 39 | 4 | 98 | 263 | 86 | 258 | 6.04e-64 | 203 |
| Msa0161480 | MtrunA17_Chr5g0400781 | 75.000 | 124 | 30 | 1 | 143 | 265 | 113 | 236 | 3.17e-62 | 198 |
| Msa0161480 | MtrunA17_Chr1g0151971 | 55.249 | 181 | 64 | 5 | 94 | 265 | 73 | 245 | 1.09e-54 | 179 |
| Msa0161480 | MtrunA17_Chr4g0044091 | 65.323 | 124 | 36 | 2 | 147 | 263 | 59 | 182 | 4.34e-47 | 157 |
| Msa0161480 | MtrunA17_Chr3g0135331 | 63.235 | 136 | 49 | 1 | 143 | 278 | 136 | 270 | 8.50e-46 | 157 |
| Msa0161480 | MtrunA17_Chr2g0299031 | 56.296 | 135 | 49 | 3 | 135 | 264 | 66 | 195 | 5.12e-39 | 136 |
| Msa0161480 | MtrunA17_Chr4g0071411 | 57.018 | 114 | 45 | 1 | 154 | 263 | 90 | 203 | 2.44e-34 | 124 |
| Msa0161480 | MtrunA17_Chr7g0217111 | 37.647 | 170 | 97 | 3 | 111 | 276 | 40 | 204 | 8.19e-22 | 92.4 |
| Msa0161480 | MtrunA17_Chr4g0060031 | 46.667 | 120 | 60 | 2 | 120 | 239 | 67 | 182 | 1.25e-19 | 87.8 |
| Msa0161480 | MtrunA17_Chr5g0416391 | 46.875 | 96 | 51 | 0 | 144 | 239 | 69 | 164 | 2.31e-18 | 83.2 |
| Msa0161480 | MtrunA17_Chr8g0362151 | 42.609 | 115 | 62 | 1 | 135 | 245 | 60 | 174 | 3.90e-18 | 82.8 |
| Msa0161480 | MtrunA17_Chr3g0123691 | 34.973 | 183 | 108 | 4 | 102 | 274 | 10 | 191 | 5.56e-18 | 82.4 |
| Msa0161480 | MtrunA17_Chr7g0265521 | 42.105 | 95 | 55 | 0 | 145 | 239 | 56 | 150 | 9.10e-18 | 80.5 |
| Msa0161480 | MtrunA17_Chr6g0450991 | 41.026 | 117 | 69 | 0 | 149 | 265 | 64 | 180 | 1.05e-17 | 81.6 |
| Msa0161480 | MtrunA17_Chr1g0179581 | 44.828 | 87 | 48 | 0 | 148 | 234 | 24 | 110 | 1.96e-17 | 76.6 |
| Msa0161480 | MtrunA17_Chr8g0381741 | 43.200 | 125 | 61 | 2 | 122 | 239 | 27 | 148 | 3.85e-17 | 80.1 |
| Msa0161480 | MtrunA17_Chr6g0453021 | 39.865 | 148 | 75 | 4 | 104 | 238 | 43 | 189 | 5.10e-17 | 79.3 |
| Msa0161480 | MtrunA17_Chr3g0119291 | 46.226 | 106 | 48 | 2 | 143 | 239 | 48 | 153 | 5.19e-17 | 79.0 |
| Msa0161480 | MtrunA17_Chr5g0415941 | 46.809 | 94 | 43 | 1 | 152 | 238 | 87 | 180 | 1.96e-16 | 78.6 |
| Msa0161480 | MtrunA17_Chr8g0362751 | 44.681 | 94 | 45 | 1 | 152 | 238 | 89 | 182 | 2.80e-15 | 74.7 |
| Msa0161480 | MtrunA17_Chr5g0403691 | 40.741 | 108 | 60 | 1 | 129 | 236 | 34 | 137 | 2.36e-11 | 62.4 |
| Msa0161480 | MtrunA17_Chr3g0127511 | 40.625 | 96 | 50 | 1 | 155 | 243 | 41 | 136 | 4.52e-11 | 62.0 |
| Msa0161480 | MtrunA17_Chr5g0403701 | 40.000 | 110 | 62 | 1 | 129 | 238 | 34 | 139 | 4.59e-11 | 61.2 |
| Msa0161480 | MtrunA17_Chr8g0346251 | 44.595 | 74 | 41 | 0 | 164 | 237 | 53 | 126 | 5.18e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0161480 | AT5G06710.1 | 51.543 | 324 | 81 | 9 | 1 | 267 | 1 | 305 | 1.60e-87 | 265 |
| Msa0161480 | AT5G47370.1 | 52.075 | 265 | 104 | 11 | 48 | 297 | 22 | 278 | 3.15e-70 | 219 |
| Msa0161480 | AT3G60390.1 | 59.406 | 202 | 60 | 6 | 81 | 263 | 76 | 274 | 1.48e-68 | 216 |
| Msa0161480 | AT4G37790.1 | 79.508 | 122 | 25 | 0 | 143 | 264 | 117 | 238 | 6.18e-66 | 208 |
| Msa0161480 | AT4G17460.1 | 50.000 | 266 | 83 | 10 | 48 | 283 | 21 | 266 | 3.93e-65 | 206 |
| Msa0161480 | AT4G16780.1 | 59.535 | 215 | 68 | 7 | 81 | 290 | 68 | 268 | 5.35e-65 | 206 |
| Msa0161480 | AT2G44910.1 | 57.426 | 202 | 63 | 5 | 81 | 266 | 84 | 278 | 1.10e-63 | 204 |
| Msa0161480 | AT2G22800.1 | 77.049 | 122 | 28 | 0 | 143 | 264 | 104 | 225 | 1.35e-63 | 202 |
| Msa0161480 | AT2G01430.1 | 50.000 | 172 | 68 | 4 | 102 | 264 | 87 | 249 | 1.63e-44 | 153 |
| Msa0161480 | AT1G70920.2 | 59.124 | 137 | 42 | 4 | 142 | 274 | 27 | 153 | 4.94e-41 | 140 |
| Msa0161480 | AT1G70920.1 | 59.124 | 137 | 42 | 4 | 142 | 274 | 57 | 183 | 4.94e-41 | 142 |
| Msa0161480 | AT5G06710.4 | 42.308 | 260 | 74 | 9 | 1 | 203 | 1 | 241 | 7.84e-41 | 143 |
| Msa0161480 | AT5G06710.2 | 36.481 | 233 | 72 | 9 | 1 | 176 | 1 | 214 | 6.52e-21 | 89.7 |
| Msa0161480 | AT5G06710.3 | 36.481 | 233 | 72 | 9 | 1 | 176 | 1 | 214 | 6.52e-21 | 89.7 |
| Msa0161480 | AT2G01430.2 | 45.045 | 111 | 45 | 2 | 102 | 203 | 87 | 190 | 1.96e-20 | 87.8 |
| Msa0161480 | AT1G69780.1 | 44.340 | 106 | 59 | 0 | 134 | 239 | 67 | 172 | 3.92e-18 | 83.2 |
| Msa0161480 | AT1G26960.1 | 44.860 | 107 | 55 | 1 | 144 | 246 | 63 | 169 | 9.13e-18 | 81.6 |
| Msa0161480 | AT5G03790.1 | 39.130 | 115 | 69 | 1 | 145 | 258 | 70 | 184 | 2.39e-17 | 80.1 |
| Msa0161480 | AT2G36610.1 | 41.176 | 102 | 52 | 1 | 147 | 240 | 66 | 167 | 1.92e-16 | 76.3 |
| Msa0161480 | AT5G15150.1 | 43.590 | 117 | 61 | 3 | 130 | 241 | 92 | 208 | 7.86e-16 | 77.0 |
| Msa0161480 | AT3G01220.1 | 44.330 | 97 | 50 | 1 | 152 | 244 | 87 | 183 | 3.51e-15 | 74.7 |
| Msa0161480 | AT2G22430.1 | 45.455 | 99 | 50 | 1 | 148 | 242 | 58 | 156 | 4.73e-15 | 74.7 |
| Msa0161480 | AT3G01470.1 | 44.565 | 92 | 51 | 0 | 152 | 243 | 68 | 159 | 5.34e-15 | 73.9 |
| Msa0161480 | AT1G27045.2 | 57.576 | 66 | 28 | 0 | 152 | 217 | 17 | 82 | 1.71e-14 | 70.9 |
| Msa0161480 | AT1G27045.5 | 57.576 | 66 | 28 | 0 | 152 | 217 | 25 | 90 | 1.79e-14 | 70.9 |
| Msa0161480 | AT1G27045.3 | 57.576 | 66 | 28 | 0 | 152 | 217 | 25 | 90 | 1.79e-14 | 70.9 |
| Msa0161480 | AT1G27045.1 | 57.576 | 66 | 28 | 0 | 152 | 217 | 68 | 133 | 2.64e-14 | 71.2 |
| Msa0161480 | AT4G40060.1 | 43.878 | 98 | 51 | 1 | 148 | 241 | 55 | 152 | 2.87e-14 | 72.4 |
| Msa0161480 | AT5G65310.1 | 41.837 | 98 | 50 | 1 | 149 | 239 | 69 | 166 | 4.29e-14 | 72.0 |
| Msa0161480 | AT5G65310.2 | 41.837 | 98 | 50 | 1 | 149 | 239 | 51 | 148 | 4.47e-14 | 71.6 |
| Msa0161480 | AT1G27045.4 | 57.576 | 66 | 28 | 0 | 152 | 217 | 68 | 133 | 4.58e-14 | 70.9 |
| Msa0161480 | AT5G03790.2 | 35.772 | 123 | 71 | 2 | 145 | 259 | 70 | 192 | 6.09e-14 | 69.7 |
| Msa0161480 | AT2G18550.1 | 44.554 | 101 | 54 | 2 | 138 | 238 | 49 | 147 | 1.37e-13 | 69.3 |
| Msa0161480 | AT2G46680.2 | 43.373 | 83 | 47 | 0 | 155 | 237 | 35 | 117 | 7.33e-13 | 67.8 |
| Msa0161480 | AT2G46680.1 | 43.373 | 83 | 47 | 0 | 155 | 237 | 35 | 117 | 7.50e-13 | 67.8 |
| Msa0161480 | AT4G36740.2 | 41.237 | 97 | 56 | 1 | 142 | 238 | 47 | 142 | 4.57e-12 | 64.7 |
| Msa0161480 | AT4G36740.1 | 41.237 | 97 | 56 | 1 | 142 | 238 | 46 | 141 | 4.73e-12 | 64.7 |
| Msa0161480 | AT3G61890.1 | 40.964 | 83 | 49 | 0 | 155 | 237 | 33 | 115 | 7.94e-11 | 61.6 |
Find 92 sgRNAs with CRISPR-Local
Find 266 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGCTTGAGCCTGATGGGCT+TGG | 0.185004 | 1_4:-36975569 | None:intergenic |
| GGCTTGAGCCTGATGGGCTT+GGG | 0.249675 | 1_4:-36975568 | None:intergenic |
| CTACCAACAACTTCATAAAA+TGG | 0.263744 | 1_4:+36973682 | Msa0161480:exon |
| AGAAAAGAGATAGGTAATTT+TGG | 0.264059 | 1_4:-36973731 | None:intergenic |
| AGGAATAACAATGCTGAATA+TGG | 0.265099 | 1_4:+36974433 | Msa0161480:CDS |
| TGAAATGAAGAAGGGAATAA+TGG | 0.282805 | 1_4:-36973601 | None:intergenic |
| GGGAGTGATGATGATGAAAA+TGG | 0.309640 | 1_4:+36974496 | Msa0161480:CDS |
| CTTCTCACCTCCCCATTCCT+TGG | 0.329294 | 1_4:+36973897 | Msa0161480:CDS |
| GGCTTGGGCTTGAGCCTGAT+GGG | 0.342578 | 1_4:-36975574 | None:intergenic |
| GGGCTTGGGCTTGAGCCTGA+TGG | 0.356666 | 1_4:-36975575 | None:intergenic |
| TTGACTTGTTGGTGTTTGTT+TGG | 0.360920 | 1_4:-36975518 | None:intergenic |
| TGTGATGTTTGAAAGGGTTT+GGG | 0.363942 | 1_4:-36973569 | None:intergenic |
| ATGGAACTTGCTTTGAGCTT+AGG | 0.368374 | 1_4:+36973701 | Msa0161480:CDS |
| GATGGTACTATAAGATTATA+AGG | 0.373420 | 1_4:-36975615 | None:intergenic |
| CTTGGTAGTGGATCTTTGTT+GGG | 0.374601 | 1_4:-36973761 | None:intergenic |
| ACGTCTTCGGTCGTTGCCGC+CGG | 0.390841 | 1_4:-36974343 | None:intergenic |
| GAAATGAAGAAGGGAATAAT+GGG | 0.391250 | 1_4:-36973600 | None:intergenic |
| GGAAGAAGGTCTAGTTGAAT+AGG | 0.392211 | 1_4:-36973842 | None:intergenic |
| GTCCTCGTCAAGTTGAAGTT+TGG | 0.396562 | 1_4:+36974736 | Msa0161480:CDS |
| GCTAGACGTGAACCGTTTCC+CGG | 0.397577 | 1_4:+36974324 | Msa0161480:CDS |
| TTGTGATGTTTGAAAGGGTT+TGG | 0.398781 | 1_4:-36973570 | None:intergenic |
| CGGTCGTTGCCGCCGGGAAA+CGG | 0.399478 | 1_4:-36974336 | None:intergenic |
| TGCTCAAGCCCAAGCCCATC+AGG | 0.400227 | 1_4:+36975560 | Msa0161480:CDS |
| ACTTGGTAGTGGATCTTTGT+TGG | 0.408944 | 1_4:-36973762 | None:intergenic |
| ATGAAGGAATCTGATGGGCT+TGG | 0.420734 | 1_4:-36975590 | None:intergenic |
| GGTTGGGTGAGCCAAGGAAT+GGG | 0.421883 | 1_4:-36973908 | None:intergenic |
| TTCACGTCTAGCTCCCTTAC+CGG | 0.422442 | 1_4:-36974313 | None:intergenic |
| TGGCAGTATTCTTGACTTGT+TGG | 0.444669 | 1_4:-36975529 | None:intergenic |
| TAGATAGAAAATTACATGGT+TGG | 0.446528 | 1_4:-36973925 | None:intergenic |
| TGAAGGAATCTGATGGGCTT+GGG | 0.452845 | 1_4:-36975589 | None:intergenic |
| TTGCAATGGATTTCAGTATG+AGG | 0.457926 | 1_4:+36974413 | Msa0161480:CDS |
| GTGTTTGTTTGGTTGTTGCA+AGG | 0.458788 | 1_4:-36975507 | None:intergenic |
| AGATAGAAAATTACATGGTT+GGG | 0.461778 | 1_4:-36973924 | None:intergenic |
| CTCAAAATGATTAGAATGAA+AGG | 0.463140 | 1_4:-36975791 | None:intergenic |
| TTATATTTGTGATGTTTGAA+AGG | 0.471630 | 1_4:-36973576 | None:intergenic |
| AGTGCAAATTGAAATGAAGA+AGG | 0.476272 | 1_4:-36973610 | None:intergenic |
| GGTGCCGTCGTCGACGTCTT+CGG | 0.477232 | 1_4:-36974356 | None:intergenic |
| TTCTGTGTCACCATTTGCAA+TGG | 0.477662 | 1_4:+36974399 | Msa0161480:CDS |
| CACATAGTGAGAGTGGTAGC+TGG | 0.479169 | 1_4:-36975456 | None:intergenic |
| GGGTGAGGAGATCTAAGAAC+AGG | 0.479275 | 1_4:-36973872 | None:intergenic |
| GGAATGGGGAGGTGAGAAGA+AGG | 0.480630 | 1_4:-36973893 | None:intergenic |
| TATATTTGTGATGTTTGAAA+GGG | 0.482388 | 1_4:-36973575 | None:intergenic |
| TGTTTGTTTGGTTGTTGCAA+GGG | 0.493080 | 1_4:-36975506 | None:intergenic |
| ATACTGAAATCCATTGCAAA+TGG | 0.496930 | 1_4:-36974409 | None:intergenic |
| CGTCTTCGGTCGTTGCCGCC+GGG | 0.503607 | 1_4:-36974342 | None:intergenic |
| GATCTAAGAACAGGAGAGAA+AGG | 0.503681 | 1_4:-36973863 | None:intergenic |
| TGGTTGGGTGAGCCAAGGAA+TGG | 0.507151 | 1_4:-36973909 | None:intergenic |
| AGAAACAAGAGAGAAAATGA+AGG | 0.510237 | 1_4:+36974460 | Msa0161480:CDS |
| ATGAAGGTGAAGCTGAAAGA+GGG | 0.510447 | 1_4:+36974476 | Msa0161480:CDS |
| TTTGTTATCATCAGGTAGAC+CGG | 0.513453 | 1_4:+36974294 | Msa0161480:intron |
| AATGAAGGTGAAGCTGAAAG+AGG | 0.514569 | 1_4:+36974475 | Msa0161480:CDS |
| GGTTTGTCAAGAAAAGAGAT+AGG | 0.515910 | 1_4:-36973740 | None:intergenic |
| GAATGGGGAGGTGAGAAGAA+GGG | 0.522886 | 1_4:-36973892 | None:intergenic |
| TATCATCAGGTAGACCGGTA+AGG | 0.523658 | 1_4:+36974299 | Msa0161480:intron |
| TGGGCTTGAGCATTAGAGAA+TGG | 0.523806 | 1_4:-36975549 | None:intergenic |
| GGGAGGTGAGAAGAAGGGTG+AGG | 0.527359 | 1_4:-36973887 | None:intergenic |
| AAATGGTGACACAGAACTGC+TGG | 0.531470 | 1_4:-36974392 | None:intergenic |
| GTTGCTACACGTTCACAAGA+AGG | 0.535467 | 1_4:-36975480 | None:intergenic |
| GTGCAAATTGAAATGAAGAA+GGG | 0.535541 | 1_4:-36973609 | None:intergenic |
| TATGATAGATAATATCATAG+AGG | 0.549542 | 1_4:+36975681 | Msa0161480:three_prime_UTR |
| ATGATGAAAATGGGTCAACT+AGG | 0.551419 | 1_4:+36974506 | Msa0161480:CDS |
| ATCATCAGGTAGACCGGTAA+GGG | 0.553491 | 1_4:+36974300 | Msa0161480:intron |
| GAACAGGAGAGAAAGGAAGA+AGG | 0.553836 | 1_4:-36973856 | None:intergenic |
| GGAGTGATGATGATGAAAAT+GGG | 0.563164 | 1_4:+36974497 | Msa0161480:CDS |
| AAGGTCATGAAGGAATCTGA+TGG | 0.569756 | 1_4:-36975596 | None:intergenic |
| ATGATAGATAATATCATAGA+GGG | 0.574506 | 1_4:+36975682 | Msa0161480:three_prime_UTR |
| GAAATTTACAGGATTAAGAG+TGG | 0.579010 | 1_4:-36974590 | None:intergenic |
| TGTTGTGTTGAGAAGAAACT+TGG | 0.582965 | 1_4:-36973779 | None:intergenic |
| GTTGAGAAGAAACTTGGTAG+TGG | 0.587395 | 1_4:-36973773 | None:intergenic |
| AAAGCTAAAGCAAACAGAAG+TGG | 0.588208 | 1_4:+36975317 | Msa0161480:CDS |
| GCTGGAAGTTGCATGTAGAA+TGG | 0.591856 | 1_4:-36975438 | None:intergenic |
| ATAAGATTATAAGGTCATGA+AGG | 0.594650 | 1_4:-36975606 | None:intergenic |
| AGAAGGTCTAGTTGAATAGG+TGG | 0.598462 | 1_4:-36973839 | None:intergenic |
| AGAAGGACACATAGTGAGAG+TGG | 0.600200 | 1_4:-36975463 | None:intergenic |
| GATGTTTGAAAGGGTTTGGG+AGG | 0.603362 | 1_4:-36973566 | None:intergenic |
| GGTTTCAAAATAGAAGAGCA+AGG | 0.607323 | 1_4:+36974757 | Msa0161480:CDS |
| AATGGTGACACAGAACTGCT+GGG | 0.607777 | 1_4:-36974391 | None:intergenic |
| TTACATGGTTGGGTGAGCCA+AGG | 0.611815 | 1_4:-36973914 | None:intergenic |
| AGGTCATGAAGGAATCTGAT+GGG | 0.612514 | 1_4:-36975595 | None:intergenic |
| AATAACAATGCTGAATATGG+AGG | 0.617867 | 1_4:+36974436 | Msa0161480:CDS |
| AACCAAACTTCAACTTGACG+AGG | 0.618703 | 1_4:-36974738 | None:intergenic |
| GTTGGGTGAGCCAAGGAATG+GGG | 0.619312 | 1_4:-36973907 | None:intergenic |
| AGTTTCTTCTCAACACAACA+AGG | 0.620493 | 1_4:+36973782 | Msa0161480:CDS |
| CATTCTTCCATGTCACACAA+AGG | 0.637486 | 1_4:-36975826 | None:intergenic |
| ATGGTGACACAGAACTGCTG+GGG | 0.640069 | 1_4:-36974390 | None:intergenic |
| ACGACCGAAGACGTCGACGA+CGG | 0.648733 | 1_4:+36974352 | Msa0161480:CDS |
| AAATCAAAATTATATACACA+CGG | 0.656876 | 1_4:-36975742 | None:intergenic |
| GGGTGAGCCAAGGAATGGGG+AGG | 0.690782 | 1_4:-36973904 | None:intergenic |
| ATATCATAGAGGGTGTGACA+AGG | 0.693551 | 1_4:+36975692 | Msa0161480:three_prime_UTR |
| AATCTTATAGTACCATCACA+TGG | 0.693563 | 1_4:+36975621 | Msa0161480:three_prime_UTR |
| AGACGTGAACCGTTTCCCGG+CGG | 0.741546 | 1_4:+36974327 | Msa0161480:CDS |
| TGGTGACACAGAACTGCTGG+GGG | 0.743324 | 1_4:-36974389 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGAAATATCAATTTTTTTAA+TGG | + | chr1_4:36974161-36974180 | Msa0161480:intron | 10.0% |
| !! | AAATTAAATAAGAAATTTAC+AGG | - | chr1_4:36974604-36974623 | None:intergenic | 10.0% |
| !! | AATTAAAACAAAAATATTGA+AGG | - | chr1_4:36974793-36974812 | None:intergenic | 10.0% |
| !!! | TTTGTTTTAATTTTTTATCT+AGG | + | chr1_4:36974801-36974820 | Msa0161480:intron | 10.0% |
| !!! | CATAAAAAAAGATATTTTTT+AGG | - | chr1_4:36974845-36974864 | None:intergenic | 10.0% |
| !! | TAAAATAAACAAAAAAATAC+TGG | - | chr1_4:36975125-36975144 | None:intergenic | 10.0% |
| !!! | TTTTTATTAAAGTTTTGTTT+TGG | + | chr1_4:36975274-36975293 | Msa0161480:intron | 10.0% |
| !!! | TGAAATATCAATTTTTTTAA+TGG | + | chr1_4:36974161-36974180 | Msa0161480:intron | 10.0% |
| !! | AAATTAAATAAGAAATTTAC+AGG | - | chr1_4:36974604-36974623 | None:intergenic | 10.0% |
| !! | AATTAAAACAAAAATATTGA+AGG | - | chr1_4:36974793-36974812 | None:intergenic | 10.0% |
| !!! | TTTGTTTTAATTTTTTATCT+AGG | + | chr1_4:36974801-36974820 | Msa0161480:intron | 10.0% |
| !!! | CATAAAAAAAGATATTTTTT+AGG | - | chr1_4:36974845-36974864 | None:intergenic | 10.0% |
| !! | TAAAATAAACAAAAAAATAC+TGG | - | chr1_4:36975125-36975144 | None:intergenic | 10.0% |
| !!! | TTTTTATTAAAGTTTTGTTT+TGG | + | chr1_4:36975274-36975293 | Msa0161480:intron | 10.0% |
| !! | AATATATAAAAACCATTTAG+AGG | - | chr1_4:36973969-36973988 | None:intergenic | 15.0% |
| !!! | TTGTTTCTTCTTTTTAATTA+AGG | + | chr1_4:36974636-36974655 | Msa0161480:intron | 15.0% |
| !! | TATTCATATTCTAACTTATT+AGG | - | chr1_4:36975004-36975023 | None:intergenic | 15.0% |
| !! | TATTAGATTTCTTTATCTTA+TGG | - | chr1_4:36975188-36975207 | None:intergenic | 15.0% |
| !! | AAATCAAAATTATATACACA+CGG | - | chr1_4:36975745-36975764 | None:intergenic | 15.0% |
| !! | AAAAAAAAATTAACAAGTCT+AGG | - | chr1_4:36975771-36975790 | None:intergenic | 15.0% |
| !! | AATATATAAAAACCATTTAG+AGG | - | chr1_4:36973969-36973988 | None:intergenic | 15.0% |
| !!! | TTGTTTCTTCTTTTTAATTA+AGG | + | chr1_4:36974636-36974655 | Msa0161480:intron | 15.0% |
| !! | TATTCATATTCTAACTTATT+AGG | - | chr1_4:36975004-36975023 | None:intergenic | 15.0% |
| !! | TATTAGATTTCTTTATCTTA+TGG | - | chr1_4:36975188-36975207 | None:intergenic | 15.0% |
| !! | AAATCAAAATTATATACACA+CGG | - | chr1_4:36975745-36975764 | None:intergenic | 15.0% |
| !! | AAAAAAAAATTAACAAGTCT+AGG | - | chr1_4:36975771-36975790 | None:intergenic | 15.0% |
| !! | TATATTTGTGATGTTTGAAA+GGG | - | chr1_4:36973578-36973597 | None:intergenic | 20.0% |
| !! | TTATATTTGTGATGTTTGAA+AGG | - | chr1_4:36973579-36973598 | None:intergenic | 20.0% |
| !! | ATAGTAGATAGAAAATTACA+TGG | - | chr1_4:36973932-36973951 | None:intergenic | 20.0% |
| !!! | TTTTTGTTTTTGTTATCATC+AGG | + | chr1_4:36974286-36974305 | Msa0161480:intron | 20.0% |
| !! | CAAAATGACATATATTTATG+AGG | - | chr1_4:36974902-36974921 | None:intergenic | 20.0% |
| !!! | TTTTTGGTTACATGAAAAAA+AGG | - | chr1_4:36975157-36975176 | None:intergenic | 20.0% |
| !!! | TCTTATGGTTTTGTTTTTTT+TGG | - | chr1_4:36975173-36975192 | None:intergenic | 20.0% |
| !!! | AGAATTCTTTTGATATTTGT+TGG | + | chr1_4:36975213-36975232 | Msa0161480:intron | 20.0% |
| !! | GACTTAAATAGATAAGTAAA+TGG | - | chr1_4:36975241-36975260 | None:intergenic | 20.0% |
| !! | TATGATAGATAATATCATAG+AGG | + | chr1_4:36975681-36975700 | Msa0161480:three_prime_UTR | 20.0% |
| !! | ATGATAGATAATATCATAGA+GGG | + | chr1_4:36975682-36975701 | Msa0161480:three_prime_UTR | 20.0% |
| !! | TATATTTGTGATGTTTGAAA+GGG | - | chr1_4:36973578-36973597 | None:intergenic | 20.0% |
| !! | TTATATTTGTGATGTTTGAA+AGG | - | chr1_4:36973579-36973598 | None:intergenic | 20.0% |
| !! | ATAGTAGATAGAAAATTACA+TGG | - | chr1_4:36973932-36973951 | None:intergenic | 20.0% |
| !!! | TTTTTGTTTTTGTTATCATC+AGG | + | chr1_4:36974286-36974305 | Msa0161480:intron | 20.0% |
| !! | CAAAATGACATATATTTATG+AGG | - | chr1_4:36974902-36974921 | None:intergenic | 20.0% |
| !!! | TTTTTGGTTACATGAAAAAA+AGG | - | chr1_4:36975157-36975176 | None:intergenic | 20.0% |
| !!! | TCTTATGGTTTTGTTTTTTT+TGG | - | chr1_4:36975173-36975192 | None:intergenic | 20.0% |
| !!! | AGAATTCTTTTGATATTTGT+TGG | + | chr1_4:36975213-36975232 | Msa0161480:intron | 20.0% |
| !! | GACTTAAATAGATAAGTAAA+TGG | - | chr1_4:36975241-36975260 | None:intergenic | 20.0% |
| !! | TATGATAGATAATATCATAG+AGG | + | chr1_4:36975681-36975700 | Msa0161480:three_prime_UTR | 20.0% |
| !! | ATGATAGATAATATCATAGA+GGG | + | chr1_4:36975682-36975701 | Msa0161480:three_prime_UTR | 20.0% |
| !! | AGAAAAGAGATAGGTAATTT+TGG | - | chr1_4:36973734-36973753 | None:intergenic | 25.0% |
| ! | AGATAGAAAATTACATGGTT+GGG | - | chr1_4:36973927-36973946 | None:intergenic | 25.0% |
| ! | TAGATAGAAAATTACATGGT+TGG | - | chr1_4:36973928-36973947 | None:intergenic | 25.0% |
| !! | TTTAAAGTGCTTGAAAATTG+TGG | + | chr1_4:36974063-36974082 | Msa0161480:intron | 25.0% |
| !! | TTAAAGTGCTTGAAAATTGT+GGG | + | chr1_4:36974064-36974083 | Msa0161480:intron | 25.0% |
| !!! | TTTGGAATGTATGATTTTGT+AGG | + | chr1_4:36975292-36975311 | Msa0161480:intron | 25.0% |
| ! | ATAAGATTATAAGGTCATGA+AGG | - | chr1_4:36975609-36975628 | None:intergenic | 25.0% |
| ! | GATGGTACTATAAGATTATA+AGG | - | chr1_4:36975618-36975637 | None:intergenic | 25.0% |
| !! | AAAGAAAATTTTCCATGTGA+TGG | - | chr1_4:36975636-36975655 | None:intergenic | 25.0% |
| ! | CTCAAAATGATTAGAATGAA+AGG | - | chr1_4:36975794-36975813 | None:intergenic | 25.0% |
| !! | AGAAAAGAGATAGGTAATTT+TGG | - | chr1_4:36973734-36973753 | None:intergenic | 25.0% |
| ! | AGATAGAAAATTACATGGTT+GGG | - | chr1_4:36973927-36973946 | None:intergenic | 25.0% |
| ! | TAGATAGAAAATTACATGGT+TGG | - | chr1_4:36973928-36973947 | None:intergenic | 25.0% |
| !! | TTTAAAGTGCTTGAAAATTG+TGG | + | chr1_4:36974063-36974082 | Msa0161480:intron | 25.0% |
| !! | TTAAAGTGCTTGAAAATTGT+GGG | + | chr1_4:36974064-36974083 | Msa0161480:intron | 25.0% |
| !!! | TTTGGAATGTATGATTTTGT+AGG | + | chr1_4:36975292-36975311 | Msa0161480:intron | 25.0% |
| ! | ATAAGATTATAAGGTCATGA+AGG | - | chr1_4:36975609-36975628 | None:intergenic | 25.0% |
| ! | GATGGTACTATAAGATTATA+AGG | - | chr1_4:36975618-36975637 | None:intergenic | 25.0% |
| !! | AAAGAAAATTTTCCATGTGA+TGG | - | chr1_4:36975636-36975655 | None:intergenic | 25.0% |
| ! | CTCAAAATGATTAGAATGAA+AGG | - | chr1_4:36975794-36975813 | None:intergenic | 25.0% |
| GAAATGAAGAAGGGAATAAT+GGG | - | chr1_4:36973603-36973622 | None:intergenic | 30.0% | |
| TGAAATGAAGAAGGGAATAA+TGG | - | chr1_4:36973604-36973623 | None:intergenic | 30.0% | |
| GTGCAAATTGAAATGAAGAA+GGG | - | chr1_4:36973612-36973631 | None:intergenic | 30.0% | |
| AGTGCAAATTGAAATGAAGA+AGG | - | chr1_4:36973613-36973632 | None:intergenic | 30.0% | |
| CTACCAACAACTTCATAAAA+TGG | + | chr1_4:36973682-36973701 | Msa0161480:exon | 30.0% | |
| ! | GTTCCATTTTATGAAGTTGT+TGG | - | chr1_4:36973688-36973707 | None:intergenic | 30.0% |
| AAAGCTTCAGAAGAAAAAAG+AGG | + | chr1_4:36973806-36973825 | Msa0161480:CDS | 30.0% | |
| ! | ATCCTTTTCTTTCCTCTAAA+TGG | + | chr1_4:36973954-36973973 | Msa0161480:intron | 30.0% |
| AACCATTTAGAGGAAAGAAA+AGG | - | chr1_4:36973959-36973978 | None:intergenic | 30.0% | |
| AAAACCTTGTACCAAATCTT+GGG | - | chr1_4:36974102-36974121 | None:intergenic | 30.0% | |
| ATACTGAAATCCATTGCAAA+TGG | - | chr1_4:36974412-36974431 | None:intergenic | 30.0% | |
| AGGAATAACAATGCTGAATA+TGG | + | chr1_4:36974433-36974452 | Msa0161480:CDS | 30.0% | |
| AATAACAATGCTGAATATGG+AGG | + | chr1_4:36974436-36974455 | Msa0161480:CDS | 30.0% | |
| AGAAACAAGAGAGAAAATGA+AGG | + | chr1_4:36974460-36974479 | Msa0161480:CDS | 30.0% | |
| GAAATTTACAGGATTAAGAG+TGG | - | chr1_4:36974593-36974612 | None:intergenic | 30.0% | |
| !!! | ATATGTCATTTTGTCTCTTC+AGG | + | chr1_4:36974909-36974928 | Msa0161480:intron | 30.0% |
| AATCTTATAGTACCATCACA+TGG | + | chr1_4:36975621-36975640 | Msa0161480:three_prime_UTR | 30.0% | |
| !!! | TTTTTTTCCTTTGTGTGACA+TGG | + | chr1_4:36975819-36975838 | Msa0161480:three_prime_UTR | 30.0% |
| GAAATGAAGAAGGGAATAAT+GGG | - | chr1_4:36973603-36973622 | None:intergenic | 30.0% | |
| TGAAATGAAGAAGGGAATAA+TGG | - | chr1_4:36973604-36973623 | None:intergenic | 30.0% | |
| GTGCAAATTGAAATGAAGAA+GGG | - | chr1_4:36973612-36973631 | None:intergenic | 30.0% | |
| AGTGCAAATTGAAATGAAGA+AGG | - | chr1_4:36973613-36973632 | None:intergenic | 30.0% | |
| CTACCAACAACTTCATAAAA+TGG | + | chr1_4:36973682-36973701 | Msa0161480:exon | 30.0% | |
| ! | GTTCCATTTTATGAAGTTGT+TGG | - | chr1_4:36973688-36973707 | None:intergenic | 30.0% |
| AAAGCTTCAGAAGAAAAAAG+AGG | + | chr1_4:36973806-36973825 | Msa0161480:CDS | 30.0% | |
| ! | ATCCTTTTCTTTCCTCTAAA+TGG | + | chr1_4:36973954-36973973 | Msa0161480:intron | 30.0% |
| AACCATTTAGAGGAAAGAAA+AGG | - | chr1_4:36973959-36973978 | None:intergenic | 30.0% | |
| AAAACCTTGTACCAAATCTT+GGG | - | chr1_4:36974102-36974121 | None:intergenic | 30.0% | |
| ATACTGAAATCCATTGCAAA+TGG | - | chr1_4:36974412-36974431 | None:intergenic | 30.0% | |
| AGGAATAACAATGCTGAATA+TGG | + | chr1_4:36974433-36974452 | Msa0161480:CDS | 30.0% | |
| AATAACAATGCTGAATATGG+AGG | + | chr1_4:36974436-36974455 | Msa0161480:CDS | 30.0% | |
| AGAAACAAGAGAGAAAATGA+AGG | + | chr1_4:36974460-36974479 | Msa0161480:CDS | 30.0% | |
| GAAATTTACAGGATTAAGAG+TGG | - | chr1_4:36974593-36974612 | None:intergenic | 30.0% | |
| !!! | ATATGTCATTTTGTCTCTTC+AGG | + | chr1_4:36974909-36974928 | Msa0161480:intron | 30.0% |
| AATCTTATAGTACCATCACA+TGG | + | chr1_4:36975621-36975640 | Msa0161480:three_prime_UTR | 30.0% | |
| !!! | TTTTTTTCCTTTGTGTGACA+TGG | + | chr1_4:36975819-36975838 | Msa0161480:three_prime_UTR | 30.0% |
| TGTGATGTTTGAAAGGGTTT+GGG | - | chr1_4:36973572-36973591 | None:intergenic | 35.0% | |
| TTGTGATGTTTGAAAGGGTT+TGG | - | chr1_4:36973573-36973592 | None:intergenic | 35.0% | |
| GGTTTGTCAAGAAAAGAGAT+AGG | - | chr1_4:36973743-36973762 | None:intergenic | 35.0% | |
| TGTTGTGTTGAGAAGAAACT+TGG | - | chr1_4:36973782-36973801 | None:intergenic | 35.0% | |
| AGTTTCTTCTCAACACAACA+AGG | + | chr1_4:36973782-36973801 | Msa0161480:CDS | 35.0% | |
| TTGAATTTGCACCCAAGATT+TGG | + | chr1_4:36974088-36974107 | Msa0161480:intron | 35.0% | |
| CAAAACCTTGTACCAAATCT+TGG | - | chr1_4:36974103-36974122 | None:intergenic | 35.0% | |
| ! | TTTGTTATCATCAGGTAGAC+CGG | + | chr1_4:36974294-36974313 | Msa0161480:intron | 35.0% |
| ! | TTGCAATGGATTTCAGTATG+AGG | + | chr1_4:36974413-36974432 | Msa0161480:CDS | 35.0% |
| ! | GGAGTGATGATGATGAAAAT+GGG | + | chr1_4:36974497-36974516 | Msa0161480:CDS | 35.0% |
| ATGATGAAAATGGGTCAACT+AGG | + | chr1_4:36974506-36974525 | Msa0161480:CDS | 35.0% | |
| GGTTTCAAAATAGAAGAGCA+AGG | + | chr1_4:36974757-36974776 | Msa0161480:CDS | 35.0% | |
| AATAAACGAAGCTCAGTTTG+AGG | - | chr1_4:36975063-36975082 | None:intergenic | 35.0% | |
| ATTGCTTACAACAGACAGTA+TGG | + | chr1_4:36975080-36975099 | Msa0161480:intron | 35.0% | |
| TTGCTTACAACAGACAGTAT+GGG | + | chr1_4:36975081-36975100 | Msa0161480:intron | 35.0% | |
| AAAGCTAAAGCAAACAGAAG+TGG | + | chr1_4:36975317-36975336 | Msa0161480:CDS | 35.0% | |
| TGTTTGTTTGGTTGTTGCAA+GGG | - | chr1_4:36975509-36975528 | None:intergenic | 35.0% | |
| !! | TTGACTTGTTGGTGTTTGTT+TGG | - | chr1_4:36975521-36975540 | None:intergenic | 35.0% |
| TGTGATGTTTGAAAGGGTTT+GGG | - | chr1_4:36973572-36973591 | None:intergenic | 35.0% | |
| TTGTGATGTTTGAAAGGGTT+TGG | - | chr1_4:36973573-36973592 | None:intergenic | 35.0% | |
| GGTTTGTCAAGAAAAGAGAT+AGG | - | chr1_4:36973743-36973762 | None:intergenic | 35.0% | |
| TGTTGTGTTGAGAAGAAACT+TGG | - | chr1_4:36973782-36973801 | None:intergenic | 35.0% | |
| AGTTTCTTCTCAACACAACA+AGG | + | chr1_4:36973782-36973801 | Msa0161480:CDS | 35.0% | |
| TTGAATTTGCACCCAAGATT+TGG | + | chr1_4:36974088-36974107 | Msa0161480:intron | 35.0% | |
| CAAAACCTTGTACCAAATCT+TGG | - | chr1_4:36974103-36974122 | None:intergenic | 35.0% | |
| ! | TTTGTTATCATCAGGTAGAC+CGG | + | chr1_4:36974294-36974313 | Msa0161480:intron | 35.0% |
| ! | TTGCAATGGATTTCAGTATG+AGG | + | chr1_4:36974413-36974432 | Msa0161480:CDS | 35.0% |
| ! | GGAGTGATGATGATGAAAAT+GGG | + | chr1_4:36974497-36974516 | Msa0161480:CDS | 35.0% |
| ATGATGAAAATGGGTCAACT+AGG | + | chr1_4:36974506-36974525 | Msa0161480:CDS | 35.0% | |
| GGTTTCAAAATAGAAGAGCA+AGG | + | chr1_4:36974757-36974776 | Msa0161480:CDS | 35.0% | |
| AATAAACGAAGCTCAGTTTG+AGG | - | chr1_4:36975063-36975082 | None:intergenic | 35.0% | |
| ATTGCTTACAACAGACAGTA+TGG | + | chr1_4:36975080-36975099 | Msa0161480:intron | 35.0% | |
| TTGCTTACAACAGACAGTAT+GGG | + | chr1_4:36975081-36975100 | Msa0161480:intron | 35.0% | |
| AAAGCTAAAGCAAACAGAAG+TGG | + | chr1_4:36975317-36975336 | Msa0161480:CDS | 35.0% | |
| TGTTTGTTTGGTTGTTGCAA+GGG | - | chr1_4:36975509-36975528 | None:intergenic | 35.0% | |
| !! | TTGACTTGTTGGTGTTTGTT+TGG | - | chr1_4:36975521-36975540 | None:intergenic | 35.0% |
| ! | ATGGAACTTGCTTTGAGCTT+AGG | + | chr1_4:36973701-36973720 | Msa0161480:CDS | 40.0% |
| !! | CTTGGTAGTGGATCTTTGTT+GGG | - | chr1_4:36973764-36973783 | None:intergenic | 40.0% |
| !! | ACTTGGTAGTGGATCTTTGT+TGG | - | chr1_4:36973765-36973784 | None:intergenic | 40.0% |
| GTTGAGAAGAAACTTGGTAG+TGG | - | chr1_4:36973776-36973795 | None:intergenic | 40.0% | |
| AGAAGGTCTAGTTGAATAGG+TGG | - | chr1_4:36973842-36973861 | None:intergenic | 40.0% | |
| GGAAGAAGGTCTAGTTGAAT+AGG | - | chr1_4:36973845-36973864 | None:intergenic | 40.0% | |
| GATCTAAGAACAGGAGAGAA+AGG | - | chr1_4:36973866-36973885 | None:intergenic | 40.0% | |
| TTCTGTGTCACCATTTGCAA+TGG | + | chr1_4:36974399-36974418 | Msa0161480:CDS | 40.0% | |
| AATGAAGGTGAAGCTGAAAG+AGG | + | chr1_4:36974475-36974494 | Msa0161480:CDS | 40.0% | |
| ATGAAGGTGAAGCTGAAAGA+GGG | + | chr1_4:36974476-36974495 | Msa0161480:CDS | 40.0% | |
| ! | GGGAGTGATGATGATGAAAA+TGG | + | chr1_4:36974496-36974515 | Msa0161480:CDS | 40.0% |
| GTAGAAGCAAAAACTTGCAC+TGG | + | chr1_4:36974695-36974714 | Msa0161480:intron | 40.0% | |
| AACCAAACTTCAACTTGACG+AGG | - | chr1_4:36974741-36974760 | None:intergenic | 40.0% | |
| GTGTTTGTTTGGTTGTTGCA+AGG | - | chr1_4:36975510-36975529 | None:intergenic | 40.0% | |
| !! | TGGCAGTATTCTTGACTTGT+TGG | - | chr1_4:36975532-36975551 | None:intergenic | 40.0% |
| AGGTCATGAAGGAATCTGAT+GGG | - | chr1_4:36975598-36975617 | None:intergenic | 40.0% | |
| AAGGTCATGAAGGAATCTGA+TGG | - | chr1_4:36975599-36975618 | None:intergenic | 40.0% | |
| ! | ATATCATAGAGGGTGTGACA+AGG | + | chr1_4:36975692-36975711 | Msa0161480:three_prime_UTR | 40.0% |
| CATTCTTCCATGTCACACAA+AGG | - | chr1_4:36975829-36975848 | None:intergenic | 40.0% | |
| ! | ATGGAACTTGCTTTGAGCTT+AGG | + | chr1_4:36973701-36973720 | Msa0161480:CDS | 40.0% |
| !! | CTTGGTAGTGGATCTTTGTT+GGG | - | chr1_4:36973764-36973783 | None:intergenic | 40.0% |
| !! | ACTTGGTAGTGGATCTTTGT+TGG | - | chr1_4:36973765-36973784 | None:intergenic | 40.0% |
| GTTGAGAAGAAACTTGGTAG+TGG | - | chr1_4:36973776-36973795 | None:intergenic | 40.0% | |
| AGAAGGTCTAGTTGAATAGG+TGG | - | chr1_4:36973842-36973861 | None:intergenic | 40.0% | |
| GGAAGAAGGTCTAGTTGAAT+AGG | - | chr1_4:36973845-36973864 | None:intergenic | 40.0% | |
| GATCTAAGAACAGGAGAGAA+AGG | - | chr1_4:36973866-36973885 | None:intergenic | 40.0% | |
| TTCTGTGTCACCATTTGCAA+TGG | + | chr1_4:36974399-36974418 | Msa0161480:CDS | 40.0% | |
| AATGAAGGTGAAGCTGAAAG+AGG | + | chr1_4:36974475-36974494 | Msa0161480:CDS | 40.0% | |
| ATGAAGGTGAAGCTGAAAGA+GGG | + | chr1_4:36974476-36974495 | Msa0161480:CDS | 40.0% | |
| ! | GGGAGTGATGATGATGAAAA+TGG | + | chr1_4:36974496-36974515 | Msa0161480:CDS | 40.0% |
| GTAGAAGCAAAAACTTGCAC+TGG | + | chr1_4:36974695-36974714 | Msa0161480:intron | 40.0% | |
| AACCAAACTTCAACTTGACG+AGG | - | chr1_4:36974741-36974760 | None:intergenic | 40.0% | |
| GTGTTTGTTTGGTTGTTGCA+AGG | - | chr1_4:36975510-36975529 | None:intergenic | 40.0% | |
| !! | TGGCAGTATTCTTGACTTGT+TGG | - | chr1_4:36975532-36975551 | None:intergenic | 40.0% |
| AGGTCATGAAGGAATCTGAT+GGG | - | chr1_4:36975598-36975617 | None:intergenic | 40.0% | |
| AAGGTCATGAAGGAATCTGA+TGG | - | chr1_4:36975599-36975618 | None:intergenic | 40.0% | |
| ! | ATATCATAGAGGGTGTGACA+AGG | + | chr1_4:36975692-36975711 | Msa0161480:three_prime_UTR | 40.0% |
| CATTCTTCCATGTCACACAA+AGG | - | chr1_4:36975829-36975848 | None:intergenic | 40.0% | |
| GATGTTTGAAAGGGTTTGGG+AGG | - | chr1_4:36973569-36973588 | None:intergenic | 45.0% | |
| GAACAGGAGAGAAAGGAAGA+AGG | - | chr1_4:36973859-36973878 | None:intergenic | 45.0% | |
| ! | TGCACCCAAGATTTGGTACA+AGG | + | chr1_4:36974095-36974114 | Msa0161480:intron | 45.0% |
| TATCATCAGGTAGACCGGTA+AGG | + | chr1_4:36974299-36974318 | Msa0161480:intron | 45.0% | |
| ATCATCAGGTAGACCGGTAA+GGG | + | chr1_4:36974300-36974319 | Msa0161480:intron | 45.0% | |
| AATGGTGACACAGAACTGCT+GGG | - | chr1_4:36974394-36974413 | None:intergenic | 45.0% | |
| AAATGGTGACACAGAACTGC+TGG | - | chr1_4:36974395-36974414 | None:intergenic | 45.0% | |
| !! | GTCCTCGTCAAGTTGAAGTT+TGG | + | chr1_4:36974736-36974755 | Msa0161480:CDS | 45.0% |
| !! | ATGGGTGTTACTCATCATCG+CGG | + | chr1_4:36975099-36975118 | Msa0161480:intron | 45.0% |
| GCTGGAAGTTGCATGTAGAA+TGG | - | chr1_4:36975441-36975460 | None:intergenic | 45.0% | |
| AGAAGGACACATAGTGAGAG+TGG | - | chr1_4:36975466-36975485 | None:intergenic | 45.0% | |
| GTTGCTACACGTTCACAAGA+AGG | - | chr1_4:36975483-36975502 | None:intergenic | 45.0% | |
| TGGGCTTGAGCATTAGAGAA+TGG | - | chr1_4:36975552-36975571 | None:intergenic | 45.0% | |
| !! | TGAAGGAATCTGATGGGCTT+GGG | - | chr1_4:36975592-36975611 | None:intergenic | 45.0% |
| !! | ATGAAGGAATCTGATGGGCT+TGG | - | chr1_4:36975593-36975612 | None:intergenic | 45.0% |
| GATGTTTGAAAGGGTTTGGG+AGG | - | chr1_4:36973569-36973588 | None:intergenic | 45.0% | |
| GAACAGGAGAGAAAGGAAGA+AGG | - | chr1_4:36973859-36973878 | None:intergenic | 45.0% | |
| ! | TGCACCCAAGATTTGGTACA+AGG | + | chr1_4:36974095-36974114 | Msa0161480:intron | 45.0% |
| TATCATCAGGTAGACCGGTA+AGG | + | chr1_4:36974299-36974318 | Msa0161480:intron | 45.0% | |
| ATCATCAGGTAGACCGGTAA+GGG | + | chr1_4:36974300-36974319 | Msa0161480:intron | 45.0% | |
| AATGGTGACACAGAACTGCT+GGG | - | chr1_4:36974394-36974413 | None:intergenic | 45.0% | |
| AAATGGTGACACAGAACTGC+TGG | - | chr1_4:36974395-36974414 | None:intergenic | 45.0% | |
| !! | GTCCTCGTCAAGTTGAAGTT+TGG | + | chr1_4:36974736-36974755 | Msa0161480:CDS | 45.0% |
| !! | ATGGGTGTTACTCATCATCG+CGG | + | chr1_4:36975099-36975118 | Msa0161480:intron | 45.0% |
| GCTGGAAGTTGCATGTAGAA+TGG | - | chr1_4:36975441-36975460 | None:intergenic | 45.0% | |
| AGAAGGACACATAGTGAGAG+TGG | - | chr1_4:36975466-36975485 | None:intergenic | 45.0% | |
| GTTGCTACACGTTCACAAGA+AGG | - | chr1_4:36975483-36975502 | None:intergenic | 45.0% | |
| TGGGCTTGAGCATTAGAGAA+TGG | - | chr1_4:36975552-36975571 | None:intergenic | 45.0% | |
| !! | TGAAGGAATCTGATGGGCTT+GGG | - | chr1_4:36975592-36975611 | None:intergenic | 45.0% |
| !! | ATGAAGGAATCTGATGGGCT+TGG | - | chr1_4:36975593-36975612 | None:intergenic | 45.0% |
| !!! | AAACATATTTTAAAATTTTT+TGG | - | chr1_4:36974244-36974263 | None:intergenic | 5.0% |
| !!! | ATAAAAAAAGATATTTTTTA+GGG | - | chr1_4:36974844-36974863 | None:intergenic | 5.0% |
| !!! | AAACATATTTTAAAATTTTT+TGG | - | chr1_4:36974244-36974263 | None:intergenic | 5.0% |
| !!! | ATAAAAAAAGATATTTTTTA+GGG | - | chr1_4:36974844-36974863 | None:intergenic | 5.0% |
| GGGTGAGGAGATCTAAGAAC+AGG | - | chr1_4:36973875-36973894 | None:intergenic | 50.0% | |
| GAATGGGGAGGTGAGAAGAA+GGG | - | chr1_4:36973895-36973914 | None:intergenic | 50.0% | |
| TTACATGGTTGGGTGAGCCA+AGG | - | chr1_4:36973917-36973936 | None:intergenic | 50.0% | |
| ! | TTCACGTCTAGCTCCCTTAC+CGG | - | chr1_4:36974316-36974335 | None:intergenic | 50.0% |
| ATGGTGACACAGAACTGCTG+GGG | - | chr1_4:36974393-36974412 | None:intergenic | 50.0% | |
| CACATAGTGAGAGTGGTAGC+TGG | - | chr1_4:36975459-36975478 | None:intergenic | 50.0% | |
| GGGTGAGGAGATCTAAGAAC+AGG | - | chr1_4:36973875-36973894 | None:intergenic | 50.0% | |
| GAATGGGGAGGTGAGAAGAA+GGG | - | chr1_4:36973895-36973914 | None:intergenic | 50.0% | |
| TTACATGGTTGGGTGAGCCA+AGG | - | chr1_4:36973917-36973936 | None:intergenic | 50.0% | |
| ! | TTCACGTCTAGCTCCCTTAC+CGG | - | chr1_4:36974316-36974335 | None:intergenic | 50.0% |
| ATGGTGACACAGAACTGCTG+GGG | - | chr1_4:36974393-36974412 | None:intergenic | 50.0% | |
| CACATAGTGAGAGTGGTAGC+TGG | - | chr1_4:36975459-36975478 | None:intergenic | 50.0% | |
| GGAATGGGGAGGTGAGAAGA+AGG | - | chr1_4:36973896-36973915 | None:intergenic | 55.0% | |
| CTTCTCACCTCCCCATTCCT+TGG | + | chr1_4:36973897-36973916 | Msa0161480:CDS | 55.0% | |
| GTTGGGTGAGCCAAGGAATG+GGG | - | chr1_4:36973910-36973929 | None:intergenic | 55.0% | |
| GGTTGGGTGAGCCAAGGAAT+GGG | - | chr1_4:36973911-36973930 | None:intergenic | 55.0% | |
| TGGTTGGGTGAGCCAAGGAA+TGG | - | chr1_4:36973912-36973931 | None:intergenic | 55.0% | |
| GCTAGACGTGAACCGTTTCC+CGG | + | chr1_4:36974324-36974343 | Msa0161480:CDS | 55.0% | |
| ACTGCTGGGGGATGACAATG+AGG | - | chr1_4:36974380-36974399 | None:intergenic | 55.0% | |
| TGGTGACACAGAACTGCTGG+GGG | - | chr1_4:36974392-36974411 | None:intergenic | 55.0% | |
| GGAATGGGGAGGTGAGAAGA+AGG | - | chr1_4:36973896-36973915 | None:intergenic | 55.0% | |
| CTTCTCACCTCCCCATTCCT+TGG | + | chr1_4:36973897-36973916 | Msa0161480:CDS | 55.0% | |
| GTTGGGTGAGCCAAGGAATG+GGG | - | chr1_4:36973910-36973929 | None:intergenic | 55.0% | |
| GGTTGGGTGAGCCAAGGAAT+GGG | - | chr1_4:36973911-36973930 | None:intergenic | 55.0% | |
| TGGTTGGGTGAGCCAAGGAA+TGG | - | chr1_4:36973912-36973931 | None:intergenic | 55.0% | |
| GCTAGACGTGAACCGTTTCC+CGG | + | chr1_4:36974324-36974343 | Msa0161480:CDS | 55.0% | |
| ACTGCTGGGGGATGACAATG+AGG | - | chr1_4:36974380-36974399 | None:intergenic | 55.0% | |
| TGGTGACACAGAACTGCTGG+GGG | - | chr1_4:36974392-36974411 | None:intergenic | 55.0% | |
| GGGAGGTGAGAAGAAGGGTG+AGG | - | chr1_4:36973890-36973909 | None:intergenic | 60.0% | |
| AGACGTGAACCGTTTCCCGG+CGG | + | chr1_4:36974327-36974346 | Msa0161480:CDS | 60.0% | |
| ACGACCGAAGACGTCGACGA+CGG | + | chr1_4:36974352-36974371 | Msa0161480:CDS | 60.0% | |
| TGCTCAAGCCCAAGCCCATC+AGG | + | chr1_4:36975560-36975579 | Msa0161480:CDS | 60.0% | |
| !! | GGCTTGAGCCTGATGGGCTT+GGG | - | chr1_4:36975571-36975590 | None:intergenic | 60.0% |
| GGCTTGGGCTTGAGCCTGAT+GGG | - | chr1_4:36975577-36975596 | None:intergenic | 60.0% | |
| GGGAGGTGAGAAGAAGGGTG+AGG | - | chr1_4:36973890-36973909 | None:intergenic | 60.0% | |
| AGACGTGAACCGTTTCCCGG+CGG | + | chr1_4:36974327-36974346 | Msa0161480:CDS | 60.0% | |
| ACGACCGAAGACGTCGACGA+CGG | + | chr1_4:36974352-36974371 | Msa0161480:CDS | 60.0% | |
| TGCTCAAGCCCAAGCCCATC+AGG | + | chr1_4:36975560-36975579 | Msa0161480:CDS | 60.0% | |
| !! | GGCTTGAGCCTGATGGGCTT+GGG | - | chr1_4:36975571-36975590 | None:intergenic | 60.0% |
| GGCTTGGGCTTGAGCCTGAT+GGG | - | chr1_4:36975577-36975596 | None:intergenic | 60.0% | |
| GGGTGAGCCAAGGAATGGGG+AGG | - | chr1_4:36973907-36973926 | None:intergenic | 65.0% | |
| ACGTCTTCGGTCGTTGCCGC+CGG | - | chr1_4:36974346-36974365 | None:intergenic | 65.0% | |
| ! | GGTGCCGTCGTCGACGTCTT+CGG | - | chr1_4:36974359-36974378 | None:intergenic | 65.0% |
| !! | GGGCTTGAGCCTGATGGGCT+TGG | - | chr1_4:36975572-36975591 | None:intergenic | 65.0% |
| GGGCTTGGGCTTGAGCCTGA+TGG | - | chr1_4:36975578-36975597 | None:intergenic | 65.0% | |
| GGGTGAGCCAAGGAATGGGG+AGG | - | chr1_4:36973907-36973926 | None:intergenic | 65.0% | |
| ACGTCTTCGGTCGTTGCCGC+CGG | - | chr1_4:36974346-36974365 | None:intergenic | 65.0% | |
| ! | GGTGCCGTCGTCGACGTCTT+CGG | - | chr1_4:36974359-36974378 | None:intergenic | 65.0% |
| !! | GGGCTTGAGCCTGATGGGCT+TGG | - | chr1_4:36975572-36975591 | None:intergenic | 65.0% |
| GGGCTTGGGCTTGAGCCTGA+TGG | - | chr1_4:36975578-36975597 | None:intergenic | 65.0% | |
| CGGTCGTTGCCGCCGGGAAA+CGG | - | chr1_4:36974339-36974358 | None:intergenic | 70.0% | |
| CGTCTTCGGTCGTTGCCGCC+GGG | - | chr1_4:36974345-36974364 | None:intergenic | 70.0% | |
| CGGTCGTTGCCGCCGGGAAA+CGG | - | chr1_4:36974339-36974358 | None:intergenic | 70.0% | |
| CGTCTTCGGTCGTTGCCGCC+GGG | - | chr1_4:36974345-36974364 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 36973547 | 36975871 | 36973547 | ID=Msa0161480;Name=Msa0161480 |
| chr1_4 | mRNA | 36973547 | 36975871 | 36973547 | ID=Msa0161480-mRNA-1;Parent=Msa0161480;Name=Msa0161480-mRNA-1;_AED=0.08;_eAED=0.08;_QI=154|1|1|1|1|1|4|257|302 |
| chr1_4 | exon | 36973547 | 36973932 | 36973547 | ID=Msa0161480-mRNA-1:exon:10861;Parent=Msa0161480-mRNA-1 |
| chr1_4 | exon | 36974308 | 36974603 | 36974308 | ID=Msa0161480-mRNA-1:exon:10862;Parent=Msa0161480-mRNA-1 |
| chr1_4 | exon | 36974699 | 36974778 | 36974699 | ID=Msa0161480-mRNA-1:exon:10863;Parent=Msa0161480-mRNA-1 |
| chr1_4 | exon | 36975314 | 36975871 | 36975314 | ID=Msa0161480-mRNA-1:exon:10864;Parent=Msa0161480-mRNA-1 |
| chr1_4 | five_prime_UTR | 36973547 | 36973700 | 36973547 | ID=Msa0161480-mRNA-1:five_prime_utr;Parent=Msa0161480-mRNA-1 |
| chr1_4 | CDS | 36973701 | 36973932 | 36973701 | ID=Msa0161480-mRNA-1:cds;Parent=Msa0161480-mRNA-1 |
| chr1_4 | CDS | 36974308 | 36974603 | 36974308 | ID=Msa0161480-mRNA-1:cds;Parent=Msa0161480-mRNA-1 |
| chr1_4 | CDS | 36974699 | 36974778 | 36974699 | ID=Msa0161480-mRNA-1:cds;Parent=Msa0161480-mRNA-1 |
| chr1_4 | CDS | 36975314 | 36975614 | 36975314 | ID=Msa0161480-mRNA-1:cds;Parent=Msa0161480-mRNA-1 |
| chr1_4 | three_prime_UTR | 36975615 | 36975871 | 36975615 | ID=Msa0161480-mRNA-1:three_prime_utr;Parent=Msa0161480-mRNA-1 |
| Gene Sequence |
| Protein sequence |
