AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0820770


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0820770 MtrunA17_Chr5g0440841 85.390 308 6 1 1 308 1 269 0.0 515
Msa0820770 MtrunA17_Chr3g0080341 37.330 367 126 8 1 308 1 322 3.66e-59 192
Msa0820770 MtrunA17_Chr8g0355121 41.127 355 120 9 1 308 1 313 3.98e-59 191
Msa0820770 MtrunA17_Chr6g0460301 35.083 362 135 10 6 308 1 321 6.78e-37 134
Msa0820770 MtrunA17_Chr7g0254991 43.750 144 62 5 6 140 1 134 9.57e-24 99.0
Msa0820770 MtrunA17_Chr7g0254991 38.235 170 59 6 138 306 194 318 3.26e-16 77.8
Msa0820770 MtrunA17_Chr3g0133971 46.721 122 55 3 22 140 27 141 2.28e-22 96.7
Msa0820770 MtrunA17_Chr3g0133971 52.000 75 34 1 172 244 324 398 9.49e-13 68.2
Msa0820770 MtrunA17_Chr2g0321411 31.984 247 134 9 25 241 11 253 7.31e-21 90.5
Msa0820770 MtrunA17_Chr4g0044771 41.732 127 59 4 22 140 18 137 7.01e-20 89.0
Msa0820770 MtrunA17_Chr2g0321381 28.920 287 155 8 1 241 1 284 1.21e-15 75.9
Msa0820770 MtrunA17_Chr7g0266211 35.878 131 66 2 29 141 46 176 1.23e-14 73.9
Msa0820770 MtrunA17_Chr1g0201751 34.637 179 92 6 87 243 32 207 1.20e-11 63.5
Msa0820770 MtrunA17_Chr4g0051101 38.211 123 56 3 124 243 70 175 2.21e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0820770 AT3G56850.1 38.390 323 122 12 22 308 16 297 9.12e-46 157
Msa0820770 AT2G41070.3 36.667 300 120 7 22 306 16 260 5.07e-42 146
Msa0820770 AT2G41070.1 36.667 300 120 7 22 306 16 260 5.07e-42 146
Msa0820770 AT2G41070.2 36.667 300 120 7 22 306 16 260 5.07e-42 146
Msa0820770 AT2G41070.4 36.667 300 120 7 22 306 25 269 7.44e-42 146
Msa0820770 AT2G41070.5 41.322 242 110 7 22 247 16 241 1.60e-40 142
Msa0820770 AT1G49720.1 42.188 128 65 1 22 140 23 150 1.52e-23 99.8
Msa0820770 AT1G49720.3 42.188 128 65 1 22 140 23 150 1.52e-23 99.8
Msa0820770 AT1G49720.2 42.188 128 65 1 22 140 23 150 1.68e-23 99.8
Msa0820770 AT4G34000.3 39.873 158 56 4 22 140 27 184 8.20e-22 95.5
Msa0820770 AT4G34000.1 39.873 158 56 4 22 140 27 184 1.37e-21 94.7
Msa0820770 AT4G34000.4 39.873 158 56 4 22 140 27 184 1.37e-21 94.7
Msa0820770 AT4G34000.2 39.873 158 56 4 22 140 27 184 1.37e-21 94.7
Msa0820770 AT3G44460.1 33.716 261 124 7 24 241 37 291 7.67e-20 88.6
Msa0820770 AT3G19290.2 38.686 137 66 3 22 140 34 170 3.76e-19 87.4
Msa0820770 AT3G19290.4 38.686 137 66 3 22 140 34 170 5.46e-19 87.0
Msa0820770 AT3G19290.3 38.686 137 66 3 22 140 34 170 6.39e-19 87.0
Msa0820770 AT3G19290.1 38.686 137 66 3 22 140 34 170 6.42e-19 87.0
Msa0820770 AT3G19290.5 38.686 137 66 3 22 140 34 170 6.42e-19 87.0
Msa0820770 AT1G03970.1 40.244 164 73 5 94 244 83 234 1.89e-17 80.9
Msa0820770 AT1G45249.1 39.098 133 64 4 22 140 21 150 4.40e-16 78.6
Msa0820770 AT1G45249.4 39.098 133 64 4 22 140 21 150 4.76e-16 78.6
Msa0820770 AT1G45249.8 39.098 133 64 4 22 140 21 150 4.76e-16 78.6
Msa0820770 AT1G45249.2 39.098 133 64 4 22 140 21 150 4.76e-16 78.6
Msa0820770 AT1G45249.9 39.098 133 64 4 22 140 21 150 4.76e-16 78.6
Msa0820770 AT1G45249.7 39.098 133 64 4 22 140 36 165 4.91e-16 78.6
Msa0820770 AT1G45249.6 39.098 133 64 4 22 140 36 165 4.91e-16 78.6
Msa0820770 AT1G45249.10 39.098 133 64 4 22 140 21 150 5.16e-16 78.2
Msa0820770 AT1G45249.5 39.098 133 64 4 22 140 21 150 5.16e-16 78.2
Msa0820770 AT1G45249.3 39.098 133 64 4 22 140 21 150 6.18e-16 78.2
Msa0820770 AT2G17770.2 29.651 172 95 5 98 244 1 171 2.28e-12 65.1
Msa0820770 AT2G36270.3 61.404 57 22 0 184 240 342 398 1.69e-11 65.1
Msa0820770 AT2G36270.1 61.404 57 22 0 184 240 342 398 1.97e-11 64.7
Msa0820770 AT2G36270.2 61.404 57 22 0 184 240 342 398 1.97e-11 64.7

Find 126 sgRNAs with CRISPR-Local

Find 326 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAACATAAATTTGTGAATA+TGG 0.139500 5_3:-58357996 None:intergenic
GAAATTAAGTAGGTCTTATT+AGG 0.195039 5_3:+58358292 Msa0820770:three_prime_UTR
TGTAAGCTGAGGTGATTATT+AGG 0.210490 5_3:+58358228 Msa0820770:three_prime_UTR
CTACTTAATTTCAGTTTCTT+TGG 0.232176 5_3:-58358281 None:intergenic
CCTTCAGACCTTCTCAAATA+TGG 0.248350 5_3:+58355884 Msa0820770:CDS
AATAGTCTACTAGGAGATTT+GGG 0.275351 5_3:+58354687 Msa0820770:CDS
TAATAGTCTACTAGGAGATT+TGG 0.281034 5_3:+58354686 Msa0820770:CDS
CCTTGGTAACCAGTTCATTA+TGG 0.284719 5_3:-58355364 None:intergenic
ACTCTTCGAAGACGGTATTT+AGG 0.289336 5_3:-58357923 None:intergenic
TTAGGTTCAGGTGATGATTC+AGG 0.303409 5_3:-58357905 None:intergenic
CAACATAAATTTGTGAATAT+GGG 0.318760 5_3:-58357995 None:intergenic
TTACCTGAAGGAAAAGAAAT+AGG 0.328349 5_3:-58353919 None:intergenic
GTAAGCTGAGGTGATTATTA+GGG 0.331486 5_3:+58358229 Msa0820770:three_prime_UTR
GTTTGATGTTCATAGGCTTC+AGG 0.334827 5_3:+58358146 Msa0820770:three_prime_UTR
CGAAGACGGTATTTAGGTTC+AGG 0.343807 5_3:-58357917 None:intergenic
TGGGCAACAGTCTCATTTAC+AGG 0.354570 5_3:+58354611 Msa0820770:CDS
CTTCAGACCTCAGTCCTACT+AGG 0.381395 5_3:+58355840 Msa0820770:CDS
GCTGAAGGAAATAAGGTTGT+AGG 0.386567 5_3:+58354762 Msa0820770:CDS
TTCTTCAATTAGTAGTTTGT+CGG 0.387734 5_3:+58355094 Msa0820770:CDS
GGAGATTTGGGGAAGCCGTT+AGG 0.390252 5_3:+58354699 Msa0820770:CDS
GAAAGTTGAGGATAGGGAAA+TGG 0.390564 5_3:+58354929 Msa0820770:CDS
TTGAGAAGGTCTGAAGGAAT+TGG 0.394839 5_3:-58355878 None:intergenic
TGAGAAGGAAAATCAAGAAT+AGG 0.395993 5_3:+58355180 Msa0820770:CDS
CCTTGCACAGGAGTTTGAGC+AGG 0.397902 5_3:+58357874 Msa0820770:intron
TGCTGGTCACTTGTCAGAAA+AGG 0.398451 5_3:-58357955 None:intergenic
GGAAGAAACCGATTAAAGTA+TGG 0.403603 5_3:-58353865 None:intergenic
TACTATAGCGAAAGCACACC+AGG 0.405628 5_3:-58358067 None:intergenic
CTAGGTCAGAAGAAACAATA+TGG 0.406097 5_3:+58354897 Msa0820770:CDS
CAATGGGTTCTCAAAGTAAT+GGG 0.413643 5_3:+58354592 Msa0820770:CDS
AGTTAGTTAAGCAAAATTCA+TGG 0.414879 5_3:+58354640 Msa0820770:CDS
CAATAATCTGAACAAGTTAG+AGG 0.421804 5_3:-58353886 None:intergenic
ATTGTTTCTTCTGACCTAGC+TGG 0.422038 5_3:-58354893 None:intergenic
AGCTAAGGTTTGATGTTCAT+AGG 0.425292 5_3:+58358139 Msa0820770:three_prime_UTR
AAATTTATGTTGAAGTATCC+TGG 0.427224 5_3:+58358006 Msa0820770:three_prime_UTR
GAGAAGGAAAATCAAGAATA+GGG 0.428756 5_3:+58355181 Msa0820770:CDS
GCGTTCACGTGCAAGAAAAC+AGG 0.432338 5_3:+58355214 Msa0820770:CDS
AGTTTGTCGGATGCAAAATC+AGG 0.438269 5_3:+58355107 Msa0820770:CDS
GTGGACTGCTGAAGGAAATA+AGG 0.439159 5_3:+58354755 Msa0820770:CDS
ATGCAAAATCAGGTCGCAAA+AGG 0.439902 5_3:+58355117 Msa0820770:CDS
ATCTATATTAACTAACTAAA+GGG 0.443756 5_3:+58358108 Msa0820770:three_prime_UTR
ATGTTGAAGTATCCTGGATA+AGG 0.445642 5_3:+58358012 Msa0820770:three_prime_UTR
TATCTATATTAACTAACTAA+AGG 0.445996 5_3:+58358107 Msa0820770:three_prime_UTR
GAGGTGATTATTAGGGAGTC+TGG 0.449100 5_3:+58358236 Msa0820770:three_prime_UTR
AAAGTTGAGGATAGGGAAAT+GGG 0.453635 5_3:+58354930 Msa0820770:CDS
AGGGAGTCTGGTTCTTGAAA+AGG 0.455796 5_3:+58358248 Msa0820770:three_prime_UTR
GAGATTTGGGGAAGCCGTTA+GGG 0.461727 5_3:+58354700 Msa0820770:CDS
CGATGTGAAAGTTGAGGATA+GGG 0.461810 5_3:+58354923 Msa0820770:CDS
TGTAGGGATGGAGAGTGAGC+AGG 0.463391 5_3:+58354779 Msa0820770:CDS
GGATGCATATGAGAAGGCTT+TGG 0.465775 5_3:+58355148 Msa0820770:CDS
GTTAAGCAAAATTCATGGTA+TGG 0.470540 5_3:+58354645 Msa0820770:CDS
GAAATGAAAGTGAGTTGAAT+GGG 0.478556 5_3:+58354561 Msa0820770:exon
TTGCACGGTGTTGCTGCCCC+TGG 0.482023 5_3:+58358049 Msa0820770:three_prime_UTR
CTTGCACAGGAGTTTGAGCA+GGG 0.484759 5_3:+58357875 Msa0820770:intron
AAGAACCACTCCAAGTTTAG+AGG 0.485878 5_3:+58355928 Msa0820770:CDS
GGAAGACGGTGGATGATGTA+TGG 0.489215 5_3:+58354862 Msa0820770:CDS
TATTAGTCCGACGGTGGGGT+TGG 0.490449 5_3:+58355013 Msa0820770:CDS
GCTGGTCACTTGTCAGAAAA+GGG 0.496060 5_3:-58357954 None:intergenic
GGGTCTCGGTGGTACGACTT+TGG 0.498535 5_3:+58354950 Msa0820770:CDS
ACGATGTGAAAGTTGAGGAT+AGG 0.500216 5_3:+58354922 Msa0820770:CDS
ACAATGGGTTCTCAAAGTAA+TGG 0.500285 5_3:+58354591 Msa0820770:CDS
ATCGTCTTCTCTTCAACGGC+AGG 0.510272 5_3:+58354809 Msa0820770:CDS
GCTTCTATTAGTCCGACGGT+GGG 0.511307 5_3:+58355008 Msa0820770:CDS
CAAACTACTAATTGAAGAAG+AGG 0.512419 5_3:-58355090 None:intergenic
ATTTGTGAATATGGGGAATG+AGG 0.513016 5_3:-58357987 None:intergenic
GACGGTGGGGTTGGATGCAA+TGG 0.513361 5_3:+58355022 Msa0820770:CDS
CTGTTCTAGCAGAGTAACCT+TGG 0.515075 5_3:-58355381 None:intergenic
AAGTTATGCTCTCCTTATCC+AGG 0.515544 5_3:-58358024 None:intergenic
AGGTCGCAAAAGGGATGCTC+CGG 0.515870 5_3:+58355127 Msa0820770:CDS
CTTTCAACCGAAAACAAGCT+TGG 0.516273 5_3:+58355064 Msa0820770:CDS
CAAAGAAACTGAAATTAAGT+AGG 0.516851 5_3:+58358282 Msa0820770:three_prime_UTR
CTGAAGGAAATAAGGTTGTA+GGG 0.518539 5_3:+58354763 Msa0820770:CDS
GCAGGCTTACCATAATGAAC+TGG 0.521206 5_3:+58355355 Msa0820770:intron
AGGAAATAAGGTTGTAGGGA+TGG 0.523139 5_3:+58354767 Msa0820770:CDS
CGTCATCGTCTTCTCTTCAA+CGG 0.525850 5_3:+58354805 Msa0820770:CDS
CTTTGGAAAGGAGGCTGAGA+AGG 0.527338 5_3:+58355165 Msa0820770:CDS
GAATGAGGAAACTTCACTGC+TGG 0.529335 5_3:-58357972 None:intergenic
GAGGATAGGGAAATGGGTCT+CGG 0.530192 5_3:+58354936 Msa0820770:CDS
TGCAAAATCAGGTCGCAAAA+GGG 0.532164 5_3:+58355118 Msa0820770:CDS
AACATAAATTTGTGAATATG+GGG 0.532622 5_3:-58357994 None:intergenic
TTGAATGGGGATTCAAACAA+TGG 0.534421 5_3:+58354575 Msa0820770:exon
TGAATGGGGATTCAAACAAT+GGG 0.535901 5_3:+58354576 Msa0820770:exon
AAAGCCTTCTCATATGCATC+CGG 0.537373 5_3:-58355146 None:intergenic
CTAGTAGGACTGAGGTCTGA+AGG 0.544396 5_3:-58355839 None:intergenic
GATGAGGTTAATAGTCTACT+AGG 0.549320 5_3:+58354678 Msa0820770:CDS
TAAAGGGTACATATTAGCTA+AGG 0.553242 5_3:+58358124 Msa0820770:three_prime_UTR
AAGATTGCCTTTGTAAGCTG+AGG 0.557060 5_3:+58358217 Msa0820770:three_prime_UTR
CAGAATGTGTGGACTGCTGA+AGG 0.557306 5_3:+58354747 Msa0820770:CDS
ATGGAGTGTACCTCTAAACT+TGG 0.560073 5_3:-58355938 None:intergenic
GAGTGTGTTAGAATTCAGAC+AGG 0.561239 5_3:-58353744 None:intergenic
CGAATTTCGACCAAATCAAG+TGG 0.565829 5_3:-58353809 None:intergenic
TGAAATGAAAGTGAGTTGAA+TGG 0.565868 5_3:+58354560 Msa0820770:exon
CACTCAGTCCATATTTGAGA+AGG 0.567961 5_3:-58355892 None:intergenic
ATGAGAAGGCTTTGGAAAGG+AGG 0.572932 5_3:+58355156 Msa0820770:CDS
TGGAGACGATGTGAAAGTTG+AGG 0.573499 5_3:+58354917 Msa0820770:CDS
TGGAGCTTCTATTAGTCCGA+CGG 0.576977 5_3:+58355004 Msa0820770:CDS
AGCTTCTATTAGTCCGACGG+TGG 0.577860 5_3:+58355007 Msa0820770:CDS
ACGAGCTTCTTCAGAATGTG+TGG 0.579972 5_3:+58354736 Msa0820770:CDS
CGTTGGCTCGTGCTTTGAGT+GGG 0.589340 5_3:+58354841 Msa0820770:CDS
TCGTGCTTTGAGTGGGAAGA+CGG 0.590102 5_3:+58354848 Msa0820770:CDS
ACGTTGGCTCGTGCTTTGAG+TGG 0.590747 5_3:+58354840 Msa0820770:CDS
CAGGAAAGATTTGAGTCTCG+TGG 0.592505 5_3:+58358165 Msa0820770:three_prime_UTR
ATAATCACCTCAGCTTACAA+AGG 0.599904 5_3:-58358224 None:intergenic
TCAAGATTCATGCTCCCTAA+CGG 0.602234 5_3:-58354714 None:intergenic
CTACTAGGAATAAAACAGAA+AGG 0.607878 5_3:+58355855 Msa0820770:CDS
CCATATTTGAGAAGGTCTGA+AGG 0.610076 5_3:-58355884 None:intergenic
CCATAATGAACTGGTTACCA+AGG 0.615234 5_3:+58355364 Msa0820770:CDS
GTATGGTCTAACTCTTGATG+AGG 0.618117 5_3:+58354662 Msa0820770:CDS
CTTCTATTAGTCCGACGGTG+GGG 0.618855 5_3:+58355009 Msa0820770:CDS
CAGAACTTACTCTTCGAAGA+CGG 0.629693 5_3:-58357931 None:intergenic
TGCTCCGGATGCATATGAGA+AGG 0.633586 5_3:+58355142 Msa0820770:CDS
TTGAAAGCTTTGAGGAATAG+CGG 0.633827 5_3:-58355048 None:intergenic
TATGCAGCTCAAGAAAGAGA+AGG 0.635674 5_3:+58355409 Msa0820770:CDS
AAATGAAAGTGAGTTGAATG+GGG 0.643853 5_3:+58354562 Msa0820770:exon
GAGAGCATAACTTCATTGCA+CGG 0.648663 5_3:+58358034 Msa0820770:three_prime_UTR
TGCTTTGAGTGGGAAGACGG+TGG 0.649656 5_3:+58354851 Msa0820770:CDS
GTGTACCTCTAAACTTGGAG+TGG 0.649695 5_3:-58355933 None:intergenic
ATTGCATCCAACCCCACCGT+CGG 0.650426 5_3:-58355020 None:intergenic
CATATGAGAAGGCTTTGGAA+AGG 0.652484 5_3:+58355153 Msa0820770:CDS
GATAGGGAAATGGGTCTCGG+TGG 0.652593 5_3:+58354939 Msa0820770:CDS
GTATGGAGAGAAATCCAGCT+AGG 0.652627 5_3:+58354879 Msa0820770:CDS
ACTATAGCGAAAGCACACCA+GGG 0.654661 5_3:-58358066 None:intergenic
ACGGCAGGCTAGTATGACGT+TGG 0.673052 5_3:+58354824 Msa0820770:CDS
GAAAGATTTGAGTCTCGTGG+TGG 0.686530 5_3:+58358168 Msa0820770:three_prime_UTR
ATAGTCTACTAGGAGATTTG+GGG 0.688137 5_3:+58354688 Msa0820770:CDS
CTATAGCGAAAGCACACCAG+GGG 0.699287 5_3:-58358065 None:intergenic
TTGCACAGGAGTTTGAGCAG+GGG 0.710311 5_3:+58357876 Msa0820770:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATGATTTGTTTTTTTTTTT+TGG + chr5_3:58354446-58354465 Msa0820770:intron 10.0%
!!! ATGATTTGTTTTTTTTTTTT+GGG + chr5_3:58354447-58354466 Msa0820770:intron 10.0%
!! TTTAAATAAATTGATTGTAT+CGG + chr5_3:58355270-58355289 Msa0820770:intron 10.0%
!! CATAATAAAAATAAAACTAA+AGG + chr5_3:58355750-58355769 Msa0820770:intron 10.0%
!!! ATTAAAGTATGGATTTTTTT+TGG - chr5_3:58353857-58353876 None:intergenic 15.0%
!! AAAAAAATCCATACTTTAAT+CGG + chr5_3:58353857-58353876 Msa0820770:five_prime_UTR 15.0%
!!! TAATGAATGATTTTGATTAA+TGG + chr5_3:58354011-58354030 Msa0820770:intron 15.0%
!!! AATGAATGATTTTGATTAAT+GGG + chr5_3:58354012-58354031 Msa0820770:intron 15.0%
!! TAAAAATAAAACTAAAGGTA+AGG + chr5_3:58355755-58355774 Msa0820770:intron 15.0%
!!! AATGATTATTTTTGTCTTTT+AGG + chr5_3:58357118-58357137 Msa0820770:intron 15.0%
!!! ACTATTTTTTAAATCAAACA+TGG + chr5_3:58357247-58357266 Msa0820770:intron 15.0%
!! TATCTATATTAACTAACTAA+AGG + chr5_3:58358107-58358126 Msa0820770:three_prime_UTR 15.0%
!! ATCTATATTAACTAACTAAA+GGG + chr5_3:58358108-58358127 Msa0820770:three_prime_UTR 15.0%
!!! ATGAATGATTTTGATTAATG+GGG + chr5_3:58354013-58354032 Msa0820770:intron 20.0%
!! TTTAAGAAATAGAAGAATCT+AGG + chr5_3:58354234-58354253 Msa0820770:intron 20.0%
!! ATGAACTAAAAATAAAACCT+TGG - chr5_3:58355797-58355816 None:intergenic 20.0%
!! TAATGCGAAATACATAATAA+TGG - chr5_3:58356277-58356296 None:intergenic 20.0%
!! TGTCAATGTATTAGTTATTA+TGG + chr5_3:58356956-58356975 Msa0820770:intron 20.0%
!!! GTTATTTTTTCTCAAGTTAT+GGG - chr5_3:58357179-58357198 None:intergenic 20.0%
!!! AGTTATTTTTTCTCAAGTTA+TGG - chr5_3:58357180-58357199 None:intergenic 20.0%
!! AACTTGAGAAAAAATAACTT+TGG + chr5_3:58357181-58357200 Msa0820770:intron 20.0%
!! ACTTGAGAAAAAATAACTTT+GGG + chr5_3:58357182-58357201 Msa0820770:intron 20.0%
!!! AAGCATTCATTTTTTACTAT+GGG - chr5_3:58357325-58357344 None:intergenic 20.0%
!!! AAAGCATTCATTTTTTACTA+TGG - chr5_3:58357326-58357345 None:intergenic 20.0%
!!! ATTTTGTGTAATATGATCTT+AGG + chr5_3:58357425-58357444 Msa0820770:intron 20.0%
!! AAAGAATACACAATATAATC+AGG - chr5_3:58357853-58357872 None:intergenic 20.0%
!! AACATAAATTTGTGAATATG+GGG - chr5_3:58357997-58358016 None:intergenic 20.0%
!! CAACATAAATTTGTGAATAT+GGG - chr5_3:58357998-58358017 None:intergenic 20.0%
!! TCAACATAAATTTGTGAATA+TGG - chr5_3:58357999-58358018 None:intergenic 20.0%
!!! TATTAGGATTTTTAAAGTGA+AGG + chr5_3:58358308-58358327 Msa0820770:three_prime_UTR 20.0%
!!! AAGTATGGATTTTTTTTGGT+CGG - chr5_3:58353853-58353872 None:intergenic 25.0%
! CCATTAACATAAAAAAGAAG+AGG - chr5_3:58353957-58353976 None:intergenic 25.0%
!!! CCTCTTCTTTTTTATGTTAA+TGG + chr5_3:58353954-58353973 Msa0820770:intron 25.0%
! ATTTGTGGTATTTCCTAAAA+AGG + chr5_3:58354045-58354064 Msa0820770:intron 25.0%
! TTCCTAAAAAGGTTAAAACT+TGG + chr5_3:58354056-58354075 Msa0820770:intron 25.0%
!! TGGAAAAAAGTGTACAAAAA+TGG + chr5_3:58354079-58354098 Msa0820770:intron 25.0%
!!! TTTTTTGTAAACCAAGTATC+CGG - chr5_3:58354406-58354425 None:intergenic 25.0%
! AGTTAGTTAAGCAAAATTCA+TGG + chr5_3:58354640-58354659 Msa0820770:CDS 25.0%
!! TTCTTCAATTAGTAGTTTGT+CGG + chr5_3:58355094-58355113 Msa0820770:CDS 25.0%
! TTACTTTACATAACGCATAA+AGG - chr5_3:58355245-58355264 None:intergenic 25.0%
!! TATTCATCATTTTCCTTAGT+TGG + chr5_3:58355295-58355314 Msa0820770:intron 25.0%
! AAGCAAATATATTCCAACTA+AGG - chr5_3:58355311-58355330 None:intergenic 25.0%
! TGTGACTTATAAATGTTTGA+TGG + chr5_3:58355331-58355350 Msa0820770:intron 25.0%
! TCTACGAAAAGATAACTTAA+CGG - chr5_3:58355505-58355524 None:intergenic 25.0%
! TGATTCTGATTTCTTAATGT+CGG - chr5_3:58355611-58355630 None:intergenic 25.0%
! GTGAGGTATATTCTATTTAT+TGG + chr5_3:58355635-58355654 Msa0820770:intron 25.0%
! AACTAAAAATAAAACCTTGG+AGG - chr5_3:58355794-58355813 None:intergenic 25.0%
! ATTCTAAACCGTTCTATATA+AGG + chr5_3:58356098-58356117 Msa0820770:intron 25.0%
! TATGTTAGTAGCATTTAGTA+GGG + chr5_3:58356372-58356391 Msa0820770:intron 25.0%
! TCTTGTACTGTATTCTATAA+AGG + chr5_3:58356419-58356438 Msa0820770:intron 25.0%
! CACTAGAATTAAGTATCTAA+CGG - chr5_3:58356753-58356772 None:intergenic 25.0%
! ATTTCAGTTGTCATTCAATT+TGG + chr5_3:58356774-58356793 Msa0820770:intron 25.0%
!! ACCATTTATGTTGATTGATT+AGG - chr5_3:58356918-58356937 None:intergenic 25.0%
!! CACTGATATTTTACCATATT+AGG - chr5_3:58357021-58357040 None:intergenic 25.0%
!!! GCTTTATTTTTTAGTAGCAT+TGG + chr5_3:58357045-58357064 Msa0820770:intron 25.0%
! TATATCGAGATTATCTACAA+GGG - chr5_3:58357500-58357519 None:intergenic 25.0%
! ATATATCGAGATTATCTACA+AGG - chr5_3:58357501-58357520 None:intergenic 25.0%
! AATGGTACTTAATATAGCAA+AGG - chr5_3:58357540-58357559 None:intergenic 25.0%
!! AAATTTATGTTGAAGTATCC+TGG + chr5_3:58358006-58358025 Msa0820770:three_prime_UTR 25.0%
! CTACTTAATTTCAGTTTCTT+TGG - chr5_3:58358284-58358303 None:intergenic 25.0%
! CAAAGAAACTGAAATTAAGT+AGG + chr5_3:58358282-58358301 Msa0820770:three_prime_UTR 25.0%
!!! GAAATTAAGTAGGTCTTATT+AGG + chr5_3:58358292-58358311 Msa0820770:three_prime_UTR 25.0%
! TGATTCAGTTATGAAAAAGT+TGG + chr5_3:58358355-58358374 Msa0820770:three_prime_UTR 25.0%
! TGTTTTTCTTCCACTTGATT+TGG + chr5_3:58353799-58353818 Msa0820770:five_prime_UTR 30.0%
!!! AGTATGGATTTTTTTTGGTC+GGG - chr5_3:58353852-58353871 None:intergenic 30.0%
CAATAATCTGAACAAGTTAG+AGG - chr5_3:58353889-58353908 None:intergenic 30.0%
TTACCTGAAGGAAAAGAAAT+AGG - chr5_3:58353922-58353941 None:intergenic 30.0%
AACGAGTAATTATTACCTGA+AGG - chr5_3:58353934-58353953 None:intergenic 30.0%
!! CACCAAGTTTTAACCTTTTT+AGG - chr5_3:58354061-58354080 None:intergenic 30.0%
CTAAAAAGGTTAAAACTTGG+TGG + chr5_3:58354059-58354078 Msa0820770:intron 30.0%
AAATAGAAGAATCTAGGCTT+TGG + chr5_3:58354240-58354259 Msa0820770:intron 30.0%
! TGAAATGAAAGTGAGTTGAA+TGG + chr5_3:58354560-58354579 Msa0820770:exon 30.0%
! GAAATGAAAGTGAGTTGAAT+GGG + chr5_3:58354561-58354580 Msa0820770:exon 30.0%
! AAATGAAAGTGAGTTGAATG+GGG + chr5_3:58354562-58354581 Msa0820770:exon 30.0%
GTTAAGCAAAATTCATGGTA+TGG + chr5_3:58354645-58354664 Msa0820770:CDS 30.0%
TAATAGTCTACTAGGAGATT+TGG + chr5_3:58354686-58354705 Msa0820770:CDS 30.0%
AATAGTCTACTAGGAGATTT+GGG + chr5_3:58354687-58354706 Msa0820770:CDS 30.0%
!!! AAGATTTTTTAGTGCAAGCA+GGG + chr5_3:58354973-58354992 Msa0820770:CDS 30.0%
CAAACTACTAATTGAAGAAG+AGG - chr5_3:58355093-58355112 None:intergenic 30.0%
TGAGAAGGAAAATCAAGAAT+AGG + chr5_3:58355180-58355199 Msa0820770:CDS 30.0%
GAGAAGGAAAATCAAGAATA+GGG + chr5_3:58355181-58355200 Msa0820770:CDS 30.0%
!! TTATAAATGTTTGATGGTGC+AGG + chr5_3:58355337-58355356 Msa0820770:intron 30.0%
AAACTAAAGGTAAGGAAACT+AGG + chr5_3:58355763-58355782 Msa0820770:intron 30.0%
! GTTCATATAAGTGTTTCTGA+AGG + chr5_3:58355811-58355830 Msa0820770:intron 30.0%
!! CTTTCTGTTTTATTCCTAGT+AGG - chr5_3:58355857-58355876 None:intergenic 30.0%
CTACTAGGAATAAAACAGAA+AGG + chr5_3:58355855-58355874 Msa0820770:CDS 30.0%
ATACTTCTTAAATTGCTGCT+TGG - chr5_3:58356048-58356067 None:intergenic 30.0%
! TTTACAGGCCTTATATAGAA+CGG - chr5_3:58356109-58356128 None:intergenic 30.0%
! CACAAACACATGATTTTTAC+AGG - chr5_3:58356124-58356143 None:intergenic 30.0%
ACTACAACGTATACAGAAAA+GGG - chr5_3:58356181-58356200 None:intergenic 30.0%
!! ATTTTAGTGCCAGGAAAAAA+AGG - chr5_3:58356230-58356249 None:intergenic 30.0%
GTATGTTAGTAGCATTTAGT+AGG + chr5_3:58356371-58356390 Msa0820770:intron 30.0%
! ACCAATTTTACTTTATAGCC+TGG + chr5_3:58356442-58356461 Msa0820770:intron 30.0%
TCCAGGCTATAAAGTAAAAT+TGG - chr5_3:58356446-58356465 None:intergenic 30.0%
TCATCATGAATGAAAACCAT+TGG - chr5_3:58356483-58356502 None:intergenic 30.0%
! TTCATTCATGATGAGTTTTG+AGG + chr5_3:58356489-58356508 Msa0820770:intron 30.0%
CAAAATCAATAATCTATCCC+TGG + chr5_3:58356590-58356609 Msa0820770:intron 30.0%
ATGAAACTTCAAACGTATCT+TGG + chr5_3:58356868-58356887 Msa0820770:intron 30.0%
GCCTAATCAATCAACATAAA+TGG + chr5_3:58356914-58356933 Msa0820770:intron 30.0%
TGACATCTGTTATCCTAATA+TGG + chr5_3:58357005-58357024 Msa0820770:intron 30.0%
ACCATTATTACTTATCACGT+AGG + chr5_3:58357088-58357107 Msa0820770:intron 30.0%
TTTCTCAAGTTATGGGATAA+CGG - chr5_3:58357172-58357191 None:intergenic 30.0%
CTGATATGCAAAAAACTGAA+GGG - chr5_3:58357297-58357316 None:intergenic 30.0%
TCTGATATGCAAAAAACTGA+AGG - chr5_3:58357298-58357317 None:intergenic 30.0%
AACTTAAGTAGAGTTGCATA+AGG + chr5_3:58357397-58357416 Msa0820770:intron 30.0%
TGCTATATTAAGTACCATTG+TGG + chr5_3:58357541-58357560 Msa0820770:intron 30.0%
GTAAAATCAATACTCCACAA+TGG - chr5_3:58357558-58357577 None:intergenic 30.0%
!!! TGGAGTATTGATTTTACTTG+TGG + chr5_3:58357561-58357580 Msa0820770:intron 30.0%
TTTCAAAACAAAGAGACATG+TGG - chr5_3:58357591-58357610 None:intergenic 30.0%
! GTTTTGTACATGTTTCTCAA+AGG + chr5_3:58357761-58357780 Msa0820770:intron 30.0%
! TAAAGGGTACATATTAGCTA+AGG + chr5_3:58358124-58358143 Msa0820770:three_prime_UTR 30.0%
!! GCTTTCGCTATTTAATTTTC+TGG - chr5_3:58358402-58358421 None:intergenic 30.0%
AGAAAAACACAGAACAGAAC+AGG - chr5_3:58353788-58353807 None:intergenic 35.0%
GGAAGAAACCGATTAAAGTA+TGG - chr5_3:58353868-58353887 None:intergenic 35.0%
!! GATCCTATTTCTTTTCCTTC+AGG + chr5_3:58353916-58353935 Msa0820770:five_prime_UTR 35.0%
ATAAGGTTGGATTGAGTGTT+AGG + chr5_3:58354185-58354204 Msa0820770:intron 35.0%
TTGGGAAAGTAAGTTGTTCT+AGG + chr5_3:58354465-58354484 Msa0820770:intron 35.0%
TGGGAAAGTAAGTTGTTCTA+GGG + chr5_3:58354466-58354485 Msa0820770:intron 35.0%
TTGAATGGGGATTCAAACAA+TGG + chr5_3:58354575-58354594 Msa0820770:exon 35.0%
TGAATGGGGATTCAAACAAT+GGG + chr5_3:58354576-58354595 Msa0820770:exon 35.0%
! ACAATGGGTTCTCAAAGTAA+TGG + chr5_3:58354591-58354610 Msa0820770:CDS 35.0%
! CAATGGGTTCTCAAAGTAAT+GGG + chr5_3:58354592-58354611 Msa0820770:CDS 35.0%
GATGAGGTTAATAGTCTACT+AGG + chr5_3:58354678-58354697 Msa0820770:CDS 35.0%
ATAGTCTACTAGGAGATTTG+GGG + chr5_3:58354688-58354707 Msa0820770:CDS 35.0%
CTGAAGGAAATAAGGTTGTA+GGG + chr5_3:58354763-58354782 Msa0820770:CDS 35.0%
CTAGGTCAGAAGAAACAATA+TGG + chr5_3:58354897-58354916 Msa0820770:CDS 35.0%
AAAGTTGAGGATAGGGAAAT+GGG + chr5_3:58354930-58354949 Msa0820770:CDS 35.0%
!!! GAAGATTTTTTAGTGCAAGC+AGG + chr5_3:58354972-58354991 Msa0820770:CDS 35.0%
!! TTGAAAGCTTTGAGGAATAG+CGG - chr5_3:58355051-58355070 None:intergenic 35.0%
ACAAACAGCAAACACTAAGT+GGG - chr5_3:58355458-58355477 None:intergenic 35.0%
AACAAACAGCAAACACTAAG+TGG - chr5_3:58355459-58355478 None:intergenic 35.0%
AAGATGTGAACTCGATTCAT+TGG + chr5_3:58355676-58355695 Msa0820770:intron 35.0%
! TTTTATTCCTAGTAGGACTG+AGG - chr5_3:58355850-58355869 None:intergenic 35.0%
GTTAACATACTCACTTAGCA+GGG - chr5_3:58355990-58356009 None:intergenic 35.0%
AGTTAACATACTCACTTAGC+AGG - chr5_3:58355991-58356010 None:intergenic 35.0%
CACTACAACGTATACAGAAA+AGG - chr5_3:58356182-58356201 None:intergenic 35.0%
CCAGGAAAAAAAGGAATACT+TGG - chr5_3:58356221-58356240 None:intergenic 35.0%
!!! CCAAGTATTCCTTTTTTTCC+TGG + chr5_3:58356218-58356237 Msa0820770:intron 35.0%
!!! TGTCAATGTATTTTAGTGCC+AGG - chr5_3:58356239-58356258 None:intergenic 35.0%
GACATGTTTGTCTTAACCAA+TGG + chr5_3:58356464-58356483 Msa0820770:intron 35.0%
AACCATCATGGAAATTTCCA+GGG - chr5_3:58356610-58356629 None:intergenic 35.0%
CTACATTTGTGAAACAACTG+TGG - chr5_3:58356652-58356671 None:intergenic 35.0%
TTGGATAAGCTGCATTGAAA+AGG + chr5_3:58356793-58356812 Msa0820770:intron 35.0%
! TAGTTATTATGGTAGTGACG+CGG + chr5_3:58356967-58356986 Msa0820770:intron 35.0%
GCCTACGTGATAAGTAATAA+TGG - chr5_3:58357092-58357111 None:intergenic 35.0%
!! TCTTTTAGGTAGTTTTCCGT+TGG + chr5_3:58357132-58357151 Msa0820770:intron 35.0%
!! CTTTTAGGTAGTTTTCCGTT+GGG + chr5_3:58357133-58357152 Msa0820770:intron 35.0%
TTCTCAAGTTATGGGATAAC+GGG - chr5_3:58357171-58357190 None:intergenic 35.0%
AGGACGAAATTGATGGAAAA+AGG - chr5_3:58357626-58357645 None:intergenic 35.0%
ATTTGTGAATATGGGGAATG+AGG - chr5_3:58357990-58358009 None:intergenic 35.0%
! ATGTTGAAGTATCCTGGATA+AGG + chr5_3:58358012-58358031 Msa0820770:three_prime_UTR 35.0%
AGCTAAGGTTTGATGTTCAT+AGG + chr5_3:58358139-58358158 Msa0820770:three_prime_UTR 35.0%
ATAATCACCTCAGCTTACAA+AGG - chr5_3:58358227-58358246 None:intergenic 35.0%
TGTAAGCTGAGGTGATTATT+AGG + chr5_3:58358228-58358247 Msa0820770:three_prime_UTR 35.0%
GTAAGCTGAGGTGATTATTA+GGG + chr5_3:58358229-58358248 Msa0820770:three_prime_UTR 35.0%
GAGTGTGTTAGAATTCAGAC+AGG - chr5_3:58353747-58353766 None:intergenic 40.0%
CGAATTTCGACCAAATCAAG+TGG - chr5_3:58353812-58353831 None:intergenic 40.0%
! ATGGGGTTGATCATGATTTG+TGG + chr5_3:58354030-58354049 Msa0820770:intron 40.0%
ATGTTGTGTTACATCAGCTG+GGG - chr5_3:58354154-58354173 None:intergenic 40.0%
CATGTTGTGTTACATCAGCT+GGG - chr5_3:58354155-58354174 None:intergenic 40.0%
CAGCTGATGTAACACAACAT+GGG + chr5_3:58354154-58354173 Msa0820770:intron 40.0%
AGCTGATGTAACACAACATG+GGG + chr5_3:58354155-58354174 Msa0820770:intron 40.0%
GGATTGAGTGTTAGGTTTGT+TGG + chr5_3:58354193-58354212 Msa0820770:intron 40.0%
!! AAGAATCTAGGCTTTGGACT+TGG + chr5_3:58354246-58354265 Msa0820770:intron 40.0%
GTATGGTCTAACTCTTGATG+AGG + chr5_3:58354662-58354681 Msa0820770:CDS 40.0%
TCAAGATTCATGCTCCCTAA+CGG - chr5_3:58354717-58354736 None:intergenic 40.0%
GCTGAAGGAAATAAGGTTGT+AGG + chr5_3:58354762-58354781 Msa0820770:CDS 40.0%
AGGAAATAAGGTTGTAGGGA+TGG + chr5_3:58354767-58354786 Msa0820770:CDS 40.0%
! ATTGTTTCTTCTGACCTAGC+TGG - chr5_3:58354896-58354915 None:intergenic 40.0%
ACGATGTGAAAGTTGAGGAT+AGG + chr5_3:58354922-58354941 Msa0820770:CDS 40.0%
CGATGTGAAAGTTGAGGATA+GGG + chr5_3:58354923-58354942 Msa0820770:CDS 40.0%
GAAAGTTGAGGATAGGGAAA+TGG + chr5_3:58354929-58354948 Msa0820770:CDS 40.0%
! GTTTTCGGTTGAAAGCTTTG+AGG - chr5_3:58355059-58355078 None:intergenic 40.0%
CTTTCAACCGAAAACAAGCT+TGG + chr5_3:58355064-58355083 Msa0820770:CDS 40.0%
!! GAGGATACCAAGCTTGTTTT+CGG - chr5_3:58355074-58355093 None:intergenic 40.0%
AGTTTGTCGGATGCAAAATC+AGG + chr5_3:58355107-58355126 Msa0820770:CDS 40.0%
ATGCAAAATCAGGTCGCAAA+AGG + chr5_3:58355117-58355136 Msa0820770:CDS 40.0%
TGCAAAATCAGGTCGCAAAA+GGG + chr5_3:58355118-58355137 Msa0820770:CDS 40.0%
AAAGCCTTCTCATATGCATC+CGG - chr5_3:58355149-58355168 None:intergenic 40.0%
!! CATATGAGAAGGCTTTGGAA+AGG + chr5_3:58355153-58355172 Msa0820770:CDS 40.0%
! CCTTGGTAACCAGTTCATTA+TGG - chr5_3:58355367-58355386 None:intergenic 40.0%
CCATAATGAACTGGTTACCA+AGG + chr5_3:58355364-58355383 Msa0820770:CDS 40.0%
TATGCAGCTCAAGAAAGAGA+AGG + chr5_3:58355409-58355428 Msa0820770:CDS 40.0%
AAACAGCAAACACTAAGTGG+GGG - chr5_3:58355456-58355475 None:intergenic 40.0%
CAAACAGCAAACACTAAGTG+GGG - chr5_3:58355457-58355476 None:intergenic 40.0%
GAAATCAGAATCACAGTGTG+AGG + chr5_3:58355618-58355637 Msa0820770:intron 40.0%
AACTCGATTCATTGGATGTG+AGG + chr5_3:58355684-58355703 Msa0820770:intron 40.0%
GAAACTAGGAAATTCCTCCA+AGG + chr5_3:58355777-58355796 Msa0820770:intron 40.0%
TTGAGAAGGTCTGAAGGAAT+TGG - chr5_3:58355881-58355900 None:intergenic 40.0%
CCATATTTGAGAAGGTCTGA+AGG - chr5_3:58355887-58355906 None:intergenic 40.0%
CCTTCAGACCTTCTCAAATA+TGG + chr5_3:58355884-58355903 Msa0820770:CDS 40.0%
CACTCAGTCCATATTTGAGA+AGG - chr5_3:58355895-58355914 None:intergenic 40.0%
AAGAACCACTCCAAGTTTAG+AGG + chr5_3:58355928-58355947 Msa0820770:CDS 40.0%
ATGGAGTGTACCTCTAAACT+TGG - chr5_3:58355941-58355960 None:intergenic 40.0%
!! TTCTCTGTTTCTGCTGTTCA+TGG - chr5_3:58356019-58356038 None:intergenic 40.0%
GAATACAGTACAAGACTCGA+AGG - chr5_3:58356414-58356433 None:intergenic 40.0%
TGGTTAAGACAAACATGTCC+AGG - chr5_3:58356463-58356482 None:intergenic 40.0%
CAAAGATCCCTACAAAACGA+AGG - chr5_3:58356555-58356574 None:intergenic 40.0%
ATCCCTGGAAATTTCCATGA+TGG + chr5_3:58356605-58356624 Msa0820770:intron 40.0%
CAACCATCATGGAAATTTCC+AGG - chr5_3:58356611-58356630 None:intergenic 40.0%
ATTTCCATGATGGTTGTCCA+TGG + chr5_3:58356615-58356634 Msa0820770:intron 40.0%
CATTTGTGAAACAACTGTGG+AGG - chr5_3:58356649-58356668 None:intergenic 40.0%
ATTGGTGAATGATGAGAGAG+AGG + chr5_3:58357063-58357082 Msa0820770:intron 40.0%
TATGCAAAAAACTGAAGGGC+TGG - chr5_3:58357293-58357312 None:intergenic 40.0%
! GTTGTTTAGGCTCTTGTTGT+TGG + chr5_3:58357374-58357393 Msa0820770:intron 40.0%
GTGATACAGGACGAAATTGA+TGG - chr5_3:58357633-58357652 None:intergenic 40.0%
AGATGATGACTCAGTGATAC+AGG - chr5_3:58357646-58357665 None:intergenic 40.0%
ACTCTGTAAGAACAGAAGCA+CGG - chr5_3:58357687-58357706 None:intergenic 40.0%
TTAGGTTCAGGTGATGATTC+AGG - chr5_3:58357908-58357927 None:intergenic 40.0%
ACTCTTCGAAGACGGTATTT+AGG - chr5_3:58357926-58357945 None:intergenic 40.0%
CAGAACTTACTCTTCGAAGA+CGG - chr5_3:58357934-58357953 None:intergenic 40.0%
AAGTTATGCTCTCCTTATCC+AGG - chr5_3:58358027-58358046 None:intergenic 40.0%
! GAGAGCATAACTTCATTGCA+CGG + chr5_3:58358034-58358053 Msa0820770:three_prime_UTR 40.0%
GTTTGATGTTCATAGGCTTC+AGG + chr5_3:58358146-58358165 Msa0820770:three_prime_UTR 40.0%
AAGATTGCCTTTGTAAGCTG+AGG + chr5_3:58358217-58358236 Msa0820770:three_prime_UTR 40.0%
CCATGTTGTGTTACATCAGC+TGG - chr5_3:58354156-58354175 None:intergenic 45.0%
CCAGCTGATGTAACACAACA+TGG + chr5_3:58354153-58354172 Msa0820770:intron 45.0%
GCTGATGTAACACAACATGG+GGG + chr5_3:58354156-58354175 Msa0820770:intron 45.0%
ACATGAATCGGTTGCACCTA+GGG - chr5_3:58354306-58354325 None:intergenic 45.0%
! GTGCAACCGATTCATGTGTT+GGG + chr5_3:58354309-58354328 Msa0820770:intron 45.0%
! AACCGATTCATGTGTTGGGT+TGG + chr5_3:58354313-58354332 Msa0820770:intron 45.0%
GACCAACCCAACACATGAAT+CGG - chr5_3:58354318-58354337 None:intergenic 45.0%
!! TGGGTTGGTCTGACTTCTAT+TGG + chr5_3:58354328-58354347 Msa0820770:intron 45.0%
!! GTAAGTTGTTCTAGGGCTTG+TGG + chr5_3:58354473-58354492 Msa0820770:intron 45.0%
!! TTGTGGTTCTGTGGTTTGGT+TGG + chr5_3:58354490-58354509 Msa0820770:intron 45.0%
!! GCACTGATTGTGATGATGAC+AGG + chr5_3:58354529-58354548 Msa0820770:intron 45.0%
TGGGCAACAGTCTCATTTAC+AGG + chr5_3:58354611-58354630 Msa0820770:CDS 45.0%
ACGAGCTTCTTCAGAATGTG+TGG + chr5_3:58354736-58354755 Msa0820770:CDS 45.0%
! GTGGACTGCTGAAGGAAATA+AGG + chr5_3:58354755-58354774 Msa0820770:CDS 45.0%
CGTCATCGTCTTCTCTTCAA+CGG + chr5_3:58354805-58354824 Msa0820770:CDS 45.0%
GTATGGAGAGAAATCCAGCT+AGG + chr5_3:58354879-58354898 Msa0820770:CDS 45.0%
TGGAGACGATGTGAAAGTTG+AGG + chr5_3:58354917-58354936 Msa0820770:CDS 45.0%
TGGAGCTTCTATTAGTCCGA+CGG + chr5_3:58355004-58355023 Msa0820770:CDS 45.0%
GGATGCATATGAGAAGGCTT+TGG + chr5_3:58355148-58355167 Msa0820770:CDS 45.0%
!! ATGAGAAGGCTTTGGAAAGG+AGG + chr5_3:58355156-58355175 Msa0820770:CDS 45.0%
CACGTGCAAGAAAACAGGTT+TGG + chr5_3:58355219-58355238 Msa0820770:intron 45.0%
GCAGGCTTACCATAATGAAC+TGG + chr5_3:58355355-58355374 Msa0820770:intron 45.0%
CTGTTCTAGCAGAGTAACCT+TGG - chr5_3:58355384-58355403 None:intergenic 45.0%
GTGTACCTCTAAACTTGGAG+TGG - chr5_3:58355936-58355955 None:intergenic 45.0%
! CAAAACGAAGGCGTGCATAA+AGG - chr5_3:58356543-58356562 None:intergenic 45.0%
! TATGCACGCCTTCGTTTTGT+AGG + chr5_3:58356544-58356563 Msa0820770:intron 45.0%
! ATGCACGCCTTCGTTTTGTA+GGG + chr5_3:58356545-58356564 Msa0820770:intron 45.0%
TGATCCATGGACAACCATCA+TGG - chr5_3:58356622-58356641 None:intergenic 45.0%
TGATGGTTGTCCATGGATCA+AGG + chr5_3:58356622-58356641 Msa0820770:intron 45.0%
! GTCAGCGCTGTATGTTGTTT+AGG + chr5_3:58357361-58357380 Msa0820770:intron 45.0%
GTGTATTCTTTCCCTTGCAC+AGG + chr5_3:58357862-58357881 Msa0820770:intron 45.0%
! CGAAGACGGTATTTAGGTTC+AGG - chr5_3:58357920-58357939 None:intergenic 45.0%
GCTGGTCACTTGTCAGAAAA+GGG - chr5_3:58357957-58357976 None:intergenic 45.0%
TGCTGGTCACTTGTCAGAAA+AGG - chr5_3:58357958-58357977 None:intergenic 45.0%
GAATGAGGAAACTTCACTGC+TGG - chr5_3:58357975-58357994 None:intergenic 45.0%
! ACTATAGCGAAAGCACACCA+GGG - chr5_3:58358069-58358088 None:intergenic 45.0%
! TACTATAGCGAAAGCACACC+AGG - chr5_3:58358070-58358089 None:intergenic 45.0%
CAGGAAAGATTTGAGTCTCG+TGG + chr5_3:58358165-58358184 Msa0820770:three_prime_UTR 45.0%
GAAAGATTTGAGTCTCGTGG+TGG + chr5_3:58358168-58358187 Msa0820770:three_prime_UTR 45.0%
GAGGTGATTATTAGGGAGTC+TGG + chr5_3:58358236-58358255 Msa0820770:three_prime_UTR 45.0%
!! AGGGAGTCTGGTTCTTGAAA+AGG + chr5_3:58358248-58358267 Msa0820770:three_prime_UTR 45.0%
CAACATGGGGGCTTGCAATA+AGG + chr5_3:58354168-58354187 Msa0820770:intron 50.0%
ATGGGGGCTTGCAATAAGGT+TGG + chr5_3:58354172-58354191 Msa0820770:intron 50.0%
CATGAATCGGTTGCACCTAG+GGG - chr5_3:58354305-58354324 None:intergenic 50.0%
CACATGAATCGGTTGCACCT+AGG - chr5_3:58354307-58354326 None:intergenic 50.0%
! GGTGCAACCGATTCATGTGT+TGG + chr5_3:58354308-58354327 Msa0820770:intron 50.0%
!! TTCTAGGGCTTGTGGTTCTG+TGG + chr5_3:58354481-58354500 Msa0820770:intron 50.0%
GAGATTTGGGGAAGCCGTTA+GGG + chr5_3:58354700-58354719 Msa0820770:CDS 50.0%
! CAGAATGTGTGGACTGCTGA+AGG + chr5_3:58354747-58354766 Msa0820770:CDS 50.0%
ATCGTCTTCTCTTCAACGGC+AGG + chr5_3:58354809-58354828 Msa0820770:CDS 50.0%
! TCGTGCTTTGAGTGGGAAGA+CGG + chr5_3:58354848-58354867 Msa0820770:CDS 50.0%
GGAAGACGGTGGATGATGTA+TGG + chr5_3:58354862-58354881 Msa0820770:CDS 50.0%
GAGGATAGGGAAATGGGTCT+CGG + chr5_3:58354936-58354955 Msa0820770:CDS 50.0%
AGCTTCTATTAGTCCGACGG+TGG + chr5_3:58355007-58355026 Msa0820770:CDS 50.0%
GCTTCTATTAGTCCGACGGT+GGG + chr5_3:58355008-58355027 Msa0820770:CDS 50.0%
CTTCTATTAGTCCGACGGTG+GGG + chr5_3:58355009-58355028 Msa0820770:CDS 50.0%
TGCTCCGGATGCATATGAGA+AGG + chr5_3:58355142-58355161 Msa0820770:CDS 50.0%
! CTTTGGAAAGGAGGCTGAGA+AGG + chr5_3:58355165-58355184 Msa0820770:CDS 50.0%
! TTTTCTTGCACGTGAACGCG+CGG - chr5_3:58355213-58355232 None:intergenic 50.0%
GCGTTCACGTGCAAGAAAAC+AGG + chr5_3:58355214-58355233 Msa0820770:CDS 50.0%
CTAGTAGGACTGAGGTCTGA+AGG - chr5_3:58355842-58355861 None:intergenic 50.0%
CTTCAGACCTCAGTCCTACT+AGG + chr5_3:58355840-58355859 Msa0820770:CDS 50.0%
! AGAGGTACACTCCATGTGCT+AGG + chr5_3:58355946-58355965 Msa0820770:intron 50.0%
GCAACATCTTGCCTAGCACA+TGG - chr5_3:58355960-58355979 None:intergenic 50.0%
GGGACTGCTTAAAGTCCCAA+CGG - chr5_3:58357151-58357170 None:intergenic 50.0%
CTGCTCAAACTCCTGTGCAA+GGG - chr5_3:58357876-58357895 None:intergenic 50.0%
CTTGCACAGGAGTTTGAGCA+GGG + chr5_3:58357875-58357894 Msa0820770:intron 50.0%
TTGCACAGGAGTTTGAGCAG+GGG + chr5_3:58357876-58357895 Msa0820770:intron 50.0%
! CTATAGCGAAAGCACACCAG+GGG - chr5_3:58358068-58358087 None:intergenic 50.0%
!! AGGCTTTGGACTTGGAAGCG+CGG + chr5_3:58354254-58354273 Msa0820770:intron 55.0%
GTCGTAGGTTCGAATCCCCT+AGG + chr5_3:58354287-58354306 Msa0820770:intron 55.0%
GGTCTGACTTCTATTGGCCC+CGG + chr5_3:58354334-58354353 Msa0820770:intron 55.0%
!! ATTGGTCCCCCCGGATTAGT+CGG + chr5_3:58354372-58354391 Msa0820770:intron 55.0%
CAAAGACCGACTAATCCGGG+GGG - chr5_3:58354381-58354400 None:intergenic 55.0%
CCAAAGACCGACTAATCCGG+GGG - chr5_3:58354382-58354401 None:intergenic 55.0%
CCCAAAGACCGACTAATCCG+GGG - chr5_3:58354383-58354402 None:intergenic 55.0%
!! CCCCGGATTAGTCGGTCTTT+GGG + chr5_3:58354380-58354399 Msa0820770:intron 55.0%
GCCCAAAGACCGACTAATCC+GGG - chr5_3:58354384-58354403 None:intergenic 55.0%
GGCCCAAAGACCGACTAATC+CGG - chr5_3:58354385-58354404 None:intergenic 55.0%
!! GGATTAGTCGGTCTTTGGGC+CGG + chr5_3:58354384-58354403 Msa0820770:intron 55.0%
! GGGCTTGTGGTTCTGTGGTT+TGG + chr5_3:58354486-58354505 Msa0820770:intron 55.0%
GGAGATTTGGGGAAGCCGTT+AGG + chr5_3:58354699-58354718 Msa0820770:CDS 55.0%
TGTAGGGATGGAGAGTGAGC+AGG + chr5_3:58354779-58354798 Msa0820770:CDS 55.0%
ACGGCAGGCTAGTATGACGT+TGG + chr5_3:58354824-58354843 Msa0820770:CDS 55.0%
!! ACGTTGGCTCGTGCTTTGAG+TGG + chr5_3:58354840-58354859 Msa0820770:CDS 55.0%
!! CGTTGGCTCGTGCTTTGAGT+GGG + chr5_3:58354841-58354860 Msa0820770:CDS 55.0%
! TGCTTTGAGTGGGAAGACGG+TGG + chr5_3:58354851-58354870 Msa0820770:CDS 55.0%
GATAGGGAAATGGGTCTCGG+TGG + chr5_3:58354939-58354958 Msa0820770:CDS 55.0%
! GTGCAAGCAGGGCTTTTTGC+TGG + chr5_3:58354984-58355003 Msa0820770:CDS 55.0%
TATTAGTCCGACGGTGGGGT+TGG + chr5_3:58355013-58355032 Msa0820770:CDS 55.0%
ATTGCATCCAACCCCACCGT+CGG - chr5_3:58355023-58355042 None:intergenic 55.0%
AGGTCGCAAAAGGGATGCTC+CGG + chr5_3:58355127-58355146 Msa0820770:CDS 55.0%
CTGTGGAGGACCTTGATCCA+TGG - chr5_3:58356635-58356654 None:intergenic 55.0%
CCTGCTCAAACTCCTGTGCA+AGG - chr5_3:58357877-58357896 None:intergenic 55.0%
CCTTGCACAGGAGTTTGAGC+AGG + chr5_3:58357874-58357893 Msa0820770:intron 55.0%
! TTGGAAGCGCGGTGCTCTGT+AGG + chr5_3:58354265-58354284 Msa0820770:intron 60.0%
CTTCTATTGGCCCCGGCTAG+TGG + chr5_3:58354341-58354360 Msa0820770:intron 60.0%
TATTGGCCCCGGCTAGTGGA+TGG + chr5_3:58354345-58354364 Msa0820770:intron 60.0%
AATCCCGCCATCCACTAGCC+GGG - chr5_3:58354355-58354374 None:intergenic 60.0%
CAATCCCGCCATCCACTAGC+CGG - chr5_3:58354356-58354375 None:intergenic 60.0%
!! CCCCCGGATTAGTCGGTCTT+TGG + chr5_3:58354379-58354398 Msa0820770:intron 60.0%
CGGTCTTTGGGCCGGATACT+TGG + chr5_3:58354392-58354411 Msa0820770:intron 60.0%
GGGTCTCGGTGGTACGACTT+TGG + chr5_3:58354950-58354969 Msa0820770:CDS 60.0%
GACGGTGGGGTTGGATGCAA+TGG + chr5_3:58355022-58355041 Msa0820770:CDS 60.0%
CGCGGTGCTCTGTAGGTCGT+AGG + chr5_3:58354272-58354291 Msa0820770:intron 65.0%
ATCCCGCCATCCACTAGCCG+GGG - chr5_3:58354354-58354373 None:intergenic 65.0%
!! CGGCTAGTGGATGGCGGGAT+TGG + chr5_3:58354354-58354373 Msa0820770:intron 65.0%
!! TTGCACGGTGTTGCTGCCCC+TGG + chr5_3:58358049-58358068 Msa0820770:three_prime_UTR 65.0%
! TGGCCCCGGCTAGTGGATGG+CGG + chr5_3:58354348-58354367 Msa0820770:intron 70.0%
!! GATGGCGGGATTGGTCCCCC+CGG + chr5_3:58354363-58354382 Msa0820770:intron 70.0%
! GGCCCCGGCTAGTGGATGGC+GGG + chr5_3:58354349-58354368 Msa0820770:intron 75.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 58353652 58358435 58353652 ID=Msa0820770;Name=Msa0820770
chr5_3 mRNA 58353652 58358435 58353652 ID=Msa0820770-mRNA-1;Parent=Msa0820770;Name=Msa0820770-mRNA-1;_AED=0.07;_eAED=0.07;_QI=314|0.5|0.8|0.8|0.75|0.6|5|471|308
chr5_3 exon 58353652 58353937 58353652 ID=Msa0820770-mRNA-1:exon:17715;Parent=Msa0820770-mRNA-1
chr5_3 exon 58354551 58355235 58354551 ID=Msa0820770-mRNA-1:exon:17716;Parent=Msa0820770-mRNA-1
chr5_3 exon 58355359 58355430 58355359 ID=Msa0820770-mRNA-1:exon:17717;Parent=Msa0820770-mRNA-1
chr5_3 exon 58355833 58355949 58355833 ID=Msa0820770-mRNA-1:exon:17718;Parent=Msa0820770-mRNA-1
chr5_3 exon 58357884 58358435 58357884 ID=Msa0820770-mRNA-1:exon:17719;Parent=Msa0820770-mRNA-1
chr5_3 five_prime_UTR 58353652 58353937 58353652 ID=Msa0820770-mRNA-1:five_prime_utr;Parent=Msa0820770-mRNA-1
chr5_3 five_prime_UTR 58354551 58354578 58354551 ID=Msa0820770-mRNA-1:five_prime_utr;Parent=Msa0820770-mRNA-1
chr5_3 CDS 58354579 58355235 58354579 ID=Msa0820770-mRNA-1:cds;Parent=Msa0820770-mRNA-1
chr5_3 CDS 58355359 58355430 58355359 ID=Msa0820770-mRNA-1:cds;Parent=Msa0820770-mRNA-1
chr5_3 CDS 58355833 58355949 58355833 ID=Msa0820770-mRNA-1:cds;Parent=Msa0820770-mRNA-1
chr5_3 CDS 58357884 58357964 58357884 ID=Msa0820770-mRNA-1:cds;Parent=Msa0820770-mRNA-1
chr5_3 three_prime_UTR 58357965 58358435 58357965 ID=Msa0820770-mRNA-1:three_prime_utr;Parent=Msa0820770-mRNA-1
Gene Sequence

>Msa0820770

ATGGGGATTCAAACAATGGGTTCTCAAAGTAATGGGCAACAGTCTCATTTACAGGCTAATCAGTTAGTTAAGCAAAATTCATGGTATGGTCTAACTCTTGATGAGGTTAATAGTCTACTAGGAGATTTGGGGAAGCCGTTAGGGAGCATGAATCTTGACGAGCTTCTTCAGAATGTGTGGACTGCTGAAGGAAATAAGGTTGTAGGGATGGAGAGTGAGCAGGTTTCGTCATCGTCTTCTCTTCAACGGCAGGCTAGTATGACGTTGGCTCGTGCTTTGAGTGGGAAGACGGTGGATGATGTATGGAGAGAAATCCAGCTAGGTCAGAAGAAACAATATGGAGACGATGTGAAAGTTGAGGATAGGGAAATGGGTCTCGGTGGTACGACTTTGGAAGATTTTTTAGTGCAAGCAGGGCTTTTTGCTGGAGCTTCTATTAGTCCGACGGTGGGGTTGGATGCAATGGATACCGCTATTCCTCAAAGCTTTCAACCGAAAACAAGCTTGGTATCCTCTTCTTCAATTAGTAGTTTGTCGGATGCAAAATCAGGTCGCAAAAGGGATGCTCCGGATGCATATGAGAAGGCTTTGGAAAGGAGGCTGAGAAGGAAAATCAAGAATAGGGAATCTGCCGCGCGTTCACGTGCAAGAAAACAGGCTTACCATAATGAACTGGTTACCAAGGTTACTCTGCTAGAACAGCAAAATATGCAGCTCAAGAAAGAGAAGGAATTTCCTTCAGACCTCAGTCCTACTAGGAATAAAACAGAAAGGCCAATTCCTTCAGACCTTCTCAAATATGGACTGAGTGACAGAGTGAAGCAAAGAACCACTCCAAGTTTAGAGGAGTTTGAGCAGGGGCTACAACCTGAATCATCACCTGAACCTAAATACCGTCTTCGAAGAGTAAGTTCTGCCCTTTTCTGA

Protein sequence

>Msa0820770

MGIQTMGSQSNGQQSHLQANQLVKQNSWYGLTLDEVNSLLGDLGKPLGSMNLDELLQNVWTAEGNKVVGMESEQVSSSSSLQRQASMTLARALSGKTVDDVWREIQLGQKKQYGDDVKVEDREMGLGGTTLEDFLVQAGLFAGASISPTVGLDAMDTAIPQSFQPKTSLVSSSSISSLSDAKSGRKRDAPDAYEKALERRLRRKIKNRESAARSRARKQAYHNELVTKVTLLEQQNMQLKKEKEFPSDLSPTRNKTERPIPSDLLKYGLSDRVKQRTTPSLEEFEQGLQPESSPEPKYRLRRVSSALF*