Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0888990 | XP_003618966.1 | 96.667 | 90 | 3 | 0 | 1 | 90 | 1 | 90 | 1.28e-56 | 179 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0010490 | Msa0888990 | 0.823434 | 1.387954e-53 | -8.615850e-47 |
| Msa0010500 | Msa0888990 | 0.816308 | 5.912922e-52 | -8.615850e-47 |
| Msa0015460 | Msa0888990 | 0.816638 | 4.987482e-52 | -8.615850e-47 |
| Msa0015480 | Msa0888990 | 0.809648 | 1.705449e-50 | -8.615850e-47 |
| Msa0037540 | Msa0888990 | -0.804397 | 2.203071e-49 | -8.615850e-47 |
| Msa0037590 | Msa0888990 | -0.810158 | 1.324550e-50 | -8.615850e-47 |
| Msa0047280 | Msa0888990 | 0.804978 | 1.666689e-49 | -8.615850e-47 |
| Msa0065010 | Msa0888990 | 0.834101 | 3.640369e-56 | -8.615850e-47 |
| Msa0104700 | Msa0888990 | 0.802911 | 4.481479e-49 | -8.615850e-47 |
| Msa0109590 | Msa0888990 | 0.818779 | 1.640716e-52 | -8.615850e-47 |
| Msa0118540 | Msa0888990 | 0.800283 | 1.549749e-48 | -8.615850e-47 |
| Msa0609220 | Msa0888990 | 0.809002 | 2.346761e-50 | -8.615850e-47 |
| Msa0615680 | Msa0888990 | 0.816013 | 6.882942e-52 | -8.615850e-47 |
| Msa0643320 | Msa0888990 | 0.822557 | 2.222465e-53 | -8.615850e-47 |
| Msa0657870 | Msa0888990 | 0.812141 | 4.923221e-51 | -8.615850e-47 |
| Msa0664970 | Msa0888990 | 0.800479 | 1.413526e-48 | -8.615850e-47 |
| Msa0672480 | Msa0888990 | 0.818742 | 1.672733e-52 | -8.615850e-47 |
| Msa0683140 | Msa0888990 | 0.823886 | 1.088125e-53 | -8.615850e-47 |
| Msa0683600 | Msa0888990 | 0.825993 | 3.461570e-54 | -8.615850e-47 |
| Msa0689780 | Msa0888990 | 0.823134 | 1.631006e-53 | -8.615850e-47 |
| Msa0703910 | Msa0888990 | 0.803358 | 3.620850e-49 | -8.615850e-47 |
| Msa0705990 | Msa0888990 | 0.802299 | 5.992363e-49 | -8.615850e-47 |
| Msa0721340 | Msa0888990 | 0.820197 | 7.787798e-53 | -8.615850e-47 |
| Msa0742150 | Msa0888990 | 0.815846 | 7.497843e-52 | -8.615850e-47 |
| Msa0748920 | Msa0888990 | 0.807436 | 5.059819e-50 | -8.615850e-47 |
| Msa0758230 | Msa0888990 | 0.819310 | 1.242186e-52 | -8.615850e-47 |
| Msa0794050 | Msa0888990 | 0.804957 | 1.683262e-49 | -8.615850e-47 |
| Msa0813260 | Msa0888990 | 0.805927 | 1.053918e-49 | -8.615850e-47 |
| Msa0818770 | Msa0888990 | 0.804188 | 2.435606e-49 | -8.615850e-47 |
| Msa0826150 | Msa0888990 | 0.818518 | 1.879744e-52 | -8.615850e-47 |
| Msa0129190 | Msa0888990 | -0.806206 | 9.206316e-50 | -8.615850e-47 |
| Msa0139990 | Msa0888990 | 0.801623 | 8.251834e-49 | -8.615850e-47 |
| Msa0150990 | Msa0888990 | 0.820756 | 5.797151e-53 | -8.615850e-47 |
| Msa0163040 | Msa0888990 | 0.804226 | 2.391459e-49 | -8.615850e-47 |
| Msa0178510 | Msa0888990 | 0.802584 | 5.235594e-49 | -8.615850e-47 |
| Msa0187830 | Msa0888990 | 0.805637 | 1.212631e-49 | -8.615850e-47 |
| Msa0207350 | Msa0888990 | 0.814813 | 1.272296e-51 | -8.615850e-47 |
| Msa0217290 | Msa0888990 | 0.819140 | 1.357848e-52 | -8.615850e-47 |
| Msa0365860 | Msa0888990 | 0.803430 | 3.499499e-49 | -8.615850e-47 |
| Msa0436920 | Msa0888990 | -0.807939 | 3.956898e-50 | -8.615850e-47 |
| Msa0450480 | Msa0888990 | 0.809952 | 1.467034e-50 | -8.615850e-47 |
| Msa0239060 | Msa0888990 | 0.801289 | 9.657725e-49 | -8.615850e-47 |
| Msa0261360 | Msa0888990 | 0.801314 | 9.545819e-49 | -8.615850e-47 |
| Msa0296820 | Msa0888990 | 0.834138 | 3.564065e-56 | -8.615850e-47 |
| Msa0335820 | Msa0888990 | -0.804607 | 1.991871e-49 | -8.615850e-47 |
| Msa0340710 | Msa0888990 | 0.806180 | 9.323759e-50 | -8.615850e-47 |
| Msa0347750 | Msa0888990 | 0.824363 | 8.407002e-54 | -8.615850e-47 |
| Msa0349700 | Msa0888990 | 0.830974 | 2.170813e-55 | -8.615850e-47 |
| Msa0358860 | Msa0888990 | 0.800202 | 1.609567e-48 | -8.615850e-47 |
| Msa0483120 | Msa0888990 | 0.801281 | 9.697372e-49 | -8.615850e-47 |
| Msa0549780 | Msa0888990 | 0.809268 | 2.057657e-50 | -8.615850e-47 |
| Msa0594710 | Msa0888990 | 0.800281 | 1.551520e-48 | -8.615850e-47 |
| Msa0602370 | Msa0888990 | 0.823747 | 1.172779e-53 | -8.615850e-47 |
| Msa0844110 | Msa0888990 | 0.801292 | 9.647691e-49 | -8.615850e-47 |
| Msa0861470 | Msa0888990 | 0.818776 | 1.643146e-52 | -8.615850e-47 |
| Msa0861570 | Msa0888990 | 0.818688 | 1.719911e-52 | -8.615850e-47 |
| Msa0865030 | Msa0888990 | 0.800108 | 1.681901e-48 | -8.615850e-47 |
| Msa0877710 | Msa0888990 | 0.803304 | 3.716347e-49 | -8.615850e-47 |
| Msa0888990 | Msa0898890 | 0.803869 | 2.837213e-49 | -8.615850e-47 |
| Msa0888990 | Msa0901110 | 0.807617 | 4.631466e-50 | -8.615850e-47 |
| Msa0888990 | Msa0901320 | 0.809534 | 1.804186e-50 | -8.615850e-47 |
| Msa0888990 | Msa0943190 | 0.803514 | 3.362324e-49 | -8.615850e-47 |
| Msa0888990 | Msa0944200 | 0.825973 | 3.500051e-54 | -8.615850e-47 |
| Msa0888990 | Msa0944610 | 0.890873 | 6.644490e-74 | -8.615850e-47 |
| Msa0888990 | Msa0951400 | 0.849059 | 4.122227e-60 | -8.615850e-47 |
| Msa0888990 | Msa0980020 | 0.802226 | 6.202404e-49 | -8.615850e-47 |
| Msa0888990 | Msa0994390 | 0.817888 | 2.610553e-52 | -8.615850e-47 |
| Msa0888990 | Msa1000930 | 0.832132 | 1.125666e-55 | -8.615850e-47 |
| Msa0888990 | Msa1001080 | 0.804420 | 2.178401e-49 | -8.615850e-47 |
| Msa0888990 | Msa1025080 | 0.814177 | 1.759574e-51 | -8.615850e-47 |
| Msa0888990 | Msa1034270 | 0.819707 | 1.008332e-52 | -8.615850e-47 |
| Msa0888990 | Msa1034290 | 0.820294 | 7.400272e-53 | -8.615850e-47 |
| Msa0888990 | Msa1042660 | 0.803232 | 3.845579e-49 | -8.615850e-47 |
| Msa0888990 | Msa1063420 | 0.817969 | 2.503101e-52 | -8.615850e-47 |
| Msa0888990 | Msa1064250 | 0.836388 | 9.637714e-57 | -8.615850e-47 |
| Msa0888990 | Msa1071320 | 0.813382 | 2.632820e-51 | -8.615850e-47 |
| Msa0888990 | Msa1073490 | 0.806439 | 8.223814e-50 | -8.615850e-47 |
| Msa0888990 | Msa1080310 | 0.802614 | 5.160460e-49 | -8.615850e-47 |
| Msa0888990 | Msa1093100 | 0.801482 | 8.819380e-49 | -8.615850e-47 |
| Msa0888990 | Msa1100930 | 0.814304 | 1.649060e-51 | -8.615850e-47 |
| Msa0888990 | Msa1109090 | 0.818748 | 1.667403e-52 | -8.615850e-47 |
| Msa0888990 | Msa1111870 | 0.811603 | 6.446041e-51 | -8.615850e-47 |
| Msa0888990 | Msa1133230 | 0.810156 | 1.326265e-50 | -8.615850e-47 |
| Msa0888990 | Msa1152920 | 0.839723 | 1.336019e-57 | -8.615850e-47 |
| Msa0888990 | Msa1163540 | 0.829862 | 4.059816e-55 | -8.615850e-47 |
| Msa0888990 | Msa1173300 | 0.803840 | 2.876258e-49 | -8.615850e-47 |
| Msa0888990 | Msa1176710 | 0.802781 | 4.767350e-49 | -8.615850e-47 |
| Msa0888990 | Msa1177780 | 0.804159 | 2.469314e-49 | -8.615850e-47 |
| Msa0888990 | Msa1178370 | 0.802621 | 5.144048e-49 | -8.615850e-47 |
| Msa0888990 | Msa1210110 | 0.813156 | 2.951691e-51 | -8.615850e-47 |
| Msa0888990 | Msa1225100 | 0.840910 | 6.540877e-58 | -8.615850e-47 |
| Msa0888990 | Msa1226610 | 0.804916 | 1.716466e-49 | -8.615850e-47 |
| Msa0888990 | Msa1253810 | 0.802795 | 4.734448e-49 | -8.615850e-47 |
| Msa0888990 | Msa1256270 | -0.803858 | 2.852293e-49 | -8.615850e-47 |
| Msa0888990 | Msa1270660 | 0.822430 | 2.379310e-53 | -8.615850e-47 |
| Msa0888990 | Msa1274560 | 0.817864 | 2.642602e-52 | -8.615850e-47 |
| Msa0888990 | Msa1302850 | 0.801369 | 9.299894e-49 | -8.615850e-47 |
| Msa0888990 | Msa1306560 | 0.806055 | 9.903360e-50 | -8.615850e-47 |
| Msa0888990 | Msa1307180 | 0.815293 | 9.957872e-52 | -8.615850e-47 |
| Msa0888990 | Msa1307600 | 0.820822 | 5.598677e-53 | -8.615850e-47 |
| Msa0888990 | Msa1316360 | 0.811587 | 6.497923e-51 | -8.615850e-47 |
| Msa0888990 | Msa1323990 | 0.802764 | 4.804470e-49 | -8.615850e-47 |
| Msa0888990 | Msa1329870 | 0.842743 | 2.145563e-58 | -8.615850e-47 |
| Msa0888990 | Msa1332050 | 0.814374 | 1.591660e-51 | -8.615850e-47 |
| Msa0888990 | Msa1355890 | 0.828562 | 8.388869e-55 | -8.615850e-47 |
| Msa0888990 | Msa1381480 | 0.823493 | 1.344987e-53 | -8.615850e-47 |
| Msa0888990 | Msa1381650 | 0.811221 | 7.804129e-51 | -8.615850e-47 |
| Msa0888990 | Msa1382790 | 0.809773 | 1.603285e-50 | -8.615850e-47 |
| Msa0888990 | Msa1405220 | 0.852684 | 3.928095e-61 | -8.615850e-47 |
| Msa0888990 | Msa1420270 | 0.819815 | 9.527155e-53 | -8.615850e-47 |
| Msa0888990 | Msa1422810 | 0.846426 | 2.187871e-59 | -8.615850e-47 |
| Msa0888990 | Msa1437270 | 0.826562 | 2.534017e-54 | -8.615850e-47 |
| Msa0888990 | Msa1454450 | 0.891444 | 3.949366e-74 | -8.615850e-47 |
| Msa0888990 | Msa1457160 | 0.851879 | 6.656198e-61 | -8.615850e-47 |
| Msa0888990 | Msa1461550 | 0.815716 | 8.017290e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0888990 | MtrunA17_Chr5g0448111 | 84.524 | 84 | 13 | 0 | 1 | 84 | 1 | 84 | 5.27e-49 | 149 |
| Msa0888990 | MtrunA17_Chr6g0461441 | 85.366 | 82 | 12 | 0 | 9 | 90 | 19 | 100 | 3.57e-47 | 145 |
| Msa0888990 | MtrunA17_Chr7g0253291 | 61.798 | 89 | 31 | 2 | 1 | 88 | 1 | 87 | 4.34e-35 | 114 |
| Msa0888990 | MtrunA17_Chr5g0448171 | 47.368 | 76 | 37 | 1 | 1 | 76 | 1 | 73 | 5.18e-21 | 79.0 |
| Msa0888990 | MtrunA17_Chr3g0107031 | 46.341 | 82 | 38 | 1 | 1 | 76 | 1 | 82 | 4.31e-20 | 77.0 |
| Msa0888990 | MtrunA17_Chr5g0432481 | 42.697 | 89 | 42 | 2 | 1 | 80 | 1 | 89 | 9.37e-20 | 76.3 |
| Msa0888990 | MtrunA17_Chr3g0078131 | 44.444 | 81 | 40 | 1 | 1 | 76 | 1 | 81 | 1.61e-19 | 75.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0888990 | AT5G18150.1 | 64.103 | 78 | 20 | 2 | 1 | 78 | 1 | 70 | 1.53e-31 | 105 |
| Msa0888990 | AT5G14602.1 | 60.494 | 81 | 28 | 2 | 1 | 81 | 1 | 77 | 8.04e-31 | 104 |
| Msa0888990 | AT5G58375.1 | 43.182 | 88 | 37 | 3 | 1 | 81 | 1 | 82 | 4.73e-17 | 69.3 |
Find 32 sgRNAs with CRISPR-Local
Find 136 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACAACTATTTGTGACTTTA+TGG | 0.033979 | 6_1:-54542872 | None:intergenic |
| AGATGATTCAAAATGGATTT+TGG | 0.097169 | 6_1:+54543726 | Msa0888990:intron |
| ATTGAAATCCTCTAAGAATT+AGG | 0.190751 | 6_1:+54543817 | Msa0888990:CDS |
| AGAGAGAGATGTGTCCTTTA+AGG | 0.203034 | 6_1:+54543073 | Msa0888990:exon |
| ATTGAGTCCCTAATTCTTAG+AGG | 0.300143 | 6_1:-54543825 | None:intergenic |
| AACACCAAGATGAACCTTAA+AGG | 0.300317 | 6_1:-54543087 | None:intergenic |
| GGTGTTCTTCTCTGCGGTTC+TGG | 0.325709 | 6_1:+54543104 | Msa0888990:CDS |
| CTGTCTCAATATGCAAATAA+TGG | 0.348611 | 6_1:+54542776 | Msa0888990:five_prime_UTR |
| TTGAAATCCTCTAAGAATTA+GGG | 0.358948 | 6_1:+54543818 | Msa0888990:CDS |
| TAAAATTTGTACAAGAATGT+TGG | 0.359414 | 6_1:-54542970 | None:intergenic |
| TCAGAAGCTAAATCAATCTT+TGG | 0.372232 | 6_1:-54543162 | None:intergenic |
| AAAATAGTAATTTAGACATA+AGG | 0.388030 | 6_1:-54543949 | None:intergenic |
| TTCTGGCAGGTTACTTTGCA+TGG | 0.389470 | 6_1:+54543121 | Msa0888990:CDS |
| AAAATTTGTACAAGAATGTT+GGG | 0.392593 | 6_1:-54542969 | None:intergenic |
| TGGCTAGTGGAAGGTATCTA+TGG | 0.397595 | 6_1:+54543762 | Msa0888990:CDS |
| GTAATTTAGACATAAGGCTT+TGG | 0.399452 | 6_1:-54543943 | None:intergenic |
| GTGGGTTCAAGAATAATCTT+TGG | 0.400788 | 6_1:+54543871 | Msa0888990:three_prime_UTR |
| TTCTTCTCTGCGGTTCTGGC+AGG | 0.404540 | 6_1:+54543108 | Msa0888990:CDS |
| GTGTCATAAATCCTTGTTTG+TGG | 0.445301 | 6_1:+54543852 | Msa0888990:three_prime_UTR |
| TTTGTACAAGAATGTTGGGT+TGG | 0.456163 | 6_1:-54542965 | None:intergenic |
| GTGTCCTTTAAGGTTCATCT+TGG | 0.474313 | 6_1:+54543083 | Msa0888990:CDS |
| AGCTTCTGATGATTCAATTG+AGG | 0.502719 | 6_1:+54543176 | Msa0888990:CDS |
| TGTCATAAATCCTTGTTTGT+GGG | 0.513684 | 6_1:+54543853 | Msa0888990:three_prime_UTR |
| GGTATCTATGGAGAAATTTG+AGG | 0.538445 | 6_1:+54543774 | Msa0888990:CDS |
| TTTGTTAGCATTGAATTGAG+AGG | 0.552114 | 6_1:-54543990 | None:intergenic |
| AAAGTCACAAATAGTTGTTG+AGG | 0.578747 | 6_1:+54542876 | Msa0888990:five_prime_UTR |
| AGGTTACTTTGCATGGAGAA+CGG | 0.580884 | 6_1:+54543128 | Msa0888990:CDS |
| GTATTCGTTGACATGGCTAG+TGG | 0.585469 | 6_1:+54543749 | Msa0888990:CDS |
| TATTCTTGAACCCACAAACA+AGG | 0.585639 | 6_1:-54543863 | None:intergenic |
| TGCAAATAATGGCATGCAGT+TGG | 0.587358 | 6_1:+54542787 | Msa0888990:five_prime_UTR |
| CATCTTGGTGTTCTTCTCTG+CGG | 0.597461 | 6_1:+54543098 | Msa0888990:CDS |
| TCGTTGACATGGCTAGTGGA+AGG | 0.632760 | 6_1:+54543753 | Msa0888990:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAAAAAAAAAGTTTTAGAA+GGG | - | chr6_1:54543251-54543270 | None:intergenic | 10.0% |
| !!! | ATAAAAAAAAAAGTTTTAGA+AGG | - | chr6_1:54543252-54543271 | None:intergenic | 10.0% |
| !! | AAAAAGATTAAAAAAAACAT+GGG | - | chr6_1:54543284-54543303 | None:intergenic | 10.0% |
| !! | TAAAAAGATTAAAAAAAACA+TGG | - | chr6_1:54543285-54543304 | None:intergenic | 10.0% |
| !!! | TATTTTTTTTGAAAGAAATT+CGG | + | chr6_1:54544020-54544039 | Msa0888990:three_prime_UTR | 10.0% |
| !!! | TAAAAAAAAAAGTTTTAGAA+GGG | - | chr6_1:54543251-54543270 | None:intergenic | 10.0% |
| !!! | ATAAAAAAAAAAGTTTTAGA+AGG | - | chr6_1:54543252-54543271 | None:intergenic | 10.0% |
| !! | AAAAAGATTAAAAAAAACAT+GGG | - | chr6_1:54543284-54543303 | None:intergenic | 10.0% |
| !! | TAAAAAGATTAAAAAAAACA+TGG | - | chr6_1:54543285-54543304 | None:intergenic | 10.0% |
| !!! | TATTTTTTTTGAAAGAAATT+CGG | + | chr6_1:54544020-54544039 | Msa0888990:three_prime_UTR | 10.0% |
| !! | AAAAAAAAAATTCCAAGATT+TGG | - | chr6_1:54543344-54543363 | None:intergenic | 15.0% |
| !! | GTTTAAAAAAAAATGTTGAT+TGG | + | chr6_1:54543386-54543405 | Msa0888990:intron | 15.0% |
| !! | AAAATAGTAATTTAGACATA+AGG | - | chr6_1:54543952-54543971 | None:intergenic | 15.0% |
| !! | AAAAAAAAAATTCCAAGATT+TGG | - | chr6_1:54543344-54543363 | None:intergenic | 15.0% |
| !! | GTTTAAAAAAAAATGTTGAT+TGG | + | chr6_1:54543386-54543405 | Msa0888990:intron | 15.0% |
| !! | AAAATAGTAATTTAGACATA+AGG | - | chr6_1:54543952-54543971 | None:intergenic | 15.0% |
| !!! | TTTTTGTTTACAATGTCAAA+AGG | - | chr6_1:54542821-54542840 | None:intergenic | 20.0% |
| !!! | TTTGATATTTTGGTTTTATG+AGG | - | chr6_1:54542932-54542951 | None:intergenic | 20.0% |
| !! | AAAATTTGTACAAGAATGTT+GGG | - | chr6_1:54542972-54542991 | None:intergenic | 20.0% |
| !! | TAAAATTTGTACAAGAATGT+TGG | - | chr6_1:54542973-54542992 | None:intergenic | 20.0% |
| !!! | TTGTACAAATTTTAATTCGT+GGG | + | chr6_1:54542979-54542998 | Msa0888990:five_prime_UTR | 20.0% |
| !!! | AAAAATCACATTGTTGTTTA+AGG | + | chr6_1:54543027-54543046 | Msa0888990:five_prime_UTR | 20.0% |
| !!! | TAGATGATGTTTTATTGTTA+AGG | + | chr6_1:54543414-54543433 | Msa0888990:intron | 20.0% |
| !! | TTAATCATGAGAATAATGAT+TGG | + | chr6_1:54543477-54543496 | Msa0888990:intron | 20.0% |
| !! | ACAAAACACAAAAGTAAAAA+AGG | - | chr6_1:54543526-54543545 | None:intergenic | 20.0% |
| !!! | TTAAATCTTGGTATTTTCTT+TGG | + | chr6_1:54543607-54543626 | Msa0888990:intron | 20.0% |
| !!! | TAAATCTTGGTATTTTCTTT+GGG | + | chr6_1:54543608-54543627 | Msa0888990:intron | 20.0% |
| !!! | TTTTTGTTTACAATGTCAAA+AGG | - | chr6_1:54542821-54542840 | None:intergenic | 20.0% |
| !!! | TTTGATATTTTGGTTTTATG+AGG | - | chr6_1:54542932-54542951 | None:intergenic | 20.0% |
| !! | AAAATTTGTACAAGAATGTT+GGG | - | chr6_1:54542972-54542991 | None:intergenic | 20.0% |
| !! | TAAAATTTGTACAAGAATGT+TGG | - | chr6_1:54542973-54542992 | None:intergenic | 20.0% |
| !!! | TTGTACAAATTTTAATTCGT+GGG | + | chr6_1:54542979-54542998 | Msa0888990:five_prime_UTR | 20.0% |
| !!! | AAAAATCACATTGTTGTTTA+AGG | + | chr6_1:54543027-54543046 | Msa0888990:five_prime_UTR | 20.0% |
| !!! | TAGATGATGTTTTATTGTTA+AGG | + | chr6_1:54543414-54543433 | Msa0888990:intron | 20.0% |
| !! | TTAATCATGAGAATAATGAT+TGG | + | chr6_1:54543477-54543496 | Msa0888990:intron | 20.0% |
| !! | ACAAAACACAAAAGTAAAAA+AGG | - | chr6_1:54543526-54543545 | None:intergenic | 20.0% |
| !!! | TTAAATCTTGGTATTTTCTT+TGG | + | chr6_1:54543607-54543626 | Msa0888990:intron | 20.0% |
| !!! | TAAATCTTGGTATTTTCTTT+GGG | + | chr6_1:54543608-54543627 | Msa0888990:intron | 20.0% |
| ! | AACAACTATTTGTGACTTTA+TGG | - | chr6_1:54542875-54542894 | None:intergenic | 25.0% |
| !!! | CTTGTACAAATTTTAATTCG+TGG | + | chr6_1:54542978-54542997 | Msa0888990:five_prime_UTR | 25.0% |
| !! | CAACAATGTGATTTTTATGA+AGG | - | chr6_1:54543023-54543042 | None:intergenic | 25.0% |
| ! | AGAAAAATCATCTTTCAAGA+AGG | + | chr6_1:54543200-54543219 | Msa0888990:CDS | 25.0% |
| !!! | GGAAGATTTTGATTTCAAAA+AGG | + | chr6_1:54543221-54543240 | Msa0888990:CDS | 25.0% |
| !! | ATTTTTCTGTGTTTGTGTTT+TGG | + | chr6_1:54543450-54543469 | Msa0888990:intron | 25.0% |
| ! | ATTCACCAAAATATGTTGAT+TGG | + | chr6_1:54543562-54543581 | Msa0888990:intron | 25.0% |
| !! | TTCACCAAAATATGTTGATT+GGG | + | chr6_1:54543563-54543582 | Msa0888990:intron | 25.0% |
| !! | TAAACCCAATCAACATATTT+TGG | - | chr6_1:54543570-54543589 | None:intergenic | 25.0% |
| !! | AACTCATCAAAATGTTGATT+GGG | + | chr6_1:54543698-54543717 | Msa0888990:intron | 25.0% |
| !!! | AGATGATTCAAAATGGATTT+TGG | + | chr6_1:54543726-54543745 | Msa0888990:intron | 25.0% |
| !!! | GATGATTCAAAATGGATTTT+GGG | + | chr6_1:54543727-54543746 | Msa0888990:intron | 25.0% |
| !! | ATTGAAATCCTCTAAGAATT+AGG | + | chr6_1:54543817-54543836 | Msa0888990:CDS | 25.0% |
| !! | TTGAAATCCTCTAAGAATTA+GGG | + | chr6_1:54543818-54543837 | Msa0888990:CDS | 25.0% |
| ! | AACAACTATTTGTGACTTTA+TGG | - | chr6_1:54542875-54542894 | None:intergenic | 25.0% |
| !!! | CTTGTACAAATTTTAATTCG+TGG | + | chr6_1:54542978-54542997 | Msa0888990:five_prime_UTR | 25.0% |
| !! | CAACAATGTGATTTTTATGA+AGG | - | chr6_1:54543023-54543042 | None:intergenic | 25.0% |
| ! | AGAAAAATCATCTTTCAAGA+AGG | + | chr6_1:54543200-54543219 | Msa0888990:CDS | 25.0% |
| !!! | GGAAGATTTTGATTTCAAAA+AGG | + | chr6_1:54543221-54543240 | Msa0888990:CDS | 25.0% |
| !! | ATTTTTCTGTGTTTGTGTTT+TGG | + | chr6_1:54543450-54543469 | Msa0888990:intron | 25.0% |
| ! | ATTCACCAAAATATGTTGAT+TGG | + | chr6_1:54543562-54543581 | Msa0888990:intron | 25.0% |
| !! | TTCACCAAAATATGTTGATT+GGG | + | chr6_1:54543563-54543582 | Msa0888990:intron | 25.0% |
| !! | TAAACCCAATCAACATATTT+TGG | - | chr6_1:54543570-54543589 | None:intergenic | 25.0% |
| !! | AACTCATCAAAATGTTGATT+GGG | + | chr6_1:54543698-54543717 | Msa0888990:intron | 25.0% |
| !!! | AGATGATTCAAAATGGATTT+TGG | + | chr6_1:54543726-54543745 | Msa0888990:intron | 25.0% |
| !!! | GATGATTCAAAATGGATTTT+GGG | + | chr6_1:54543727-54543746 | Msa0888990:intron | 25.0% |
| !! | ATTGAAATCCTCTAAGAATT+AGG | + | chr6_1:54543817-54543836 | Msa0888990:CDS | 25.0% |
| !! | TTGAAATCCTCTAAGAATTA+GGG | + | chr6_1:54543818-54543837 | Msa0888990:CDS | 25.0% |
| CTGTCTCAATATGCAAATAA+TGG | + | chr6_1:54542776-54542795 | Msa0888990:five_prime_UTR | 30.0% | |
| AAAGTCACAAATAGTTGTTG+AGG | + | chr6_1:54542876-54542895 | Msa0888990:five_prime_UTR | 30.0% | |
| !!! | TATTTTGGTTTTATGAGGAG+AGG | - | chr6_1:54542927-54542946 | None:intergenic | 30.0% |
| ! | CAATGTGATTTTTATGAAGG+AGG | - | chr6_1:54543020-54543039 | None:intergenic | 30.0% |
| TCAGAAGCTAAATCAATCTT+TGG | - | chr6_1:54543165-54543184 | None:intergenic | 30.0% | |
| ATATGTACGAATCCAAATCT+TGG | + | chr6_1:54543329-54543348 | Msa0888990:intron | 30.0% | |
| ! | GAGGTTTTCATGTTAAATCT+TGG | + | chr6_1:54543595-54543614 | Msa0888990:intron | 30.0% |
| GAACTCATCAAAATGTTGAT+TGG | + | chr6_1:54543697-54543716 | Msa0888990:intron | 30.0% | |
| ! | GGTTTTCAGATGATTCAAAA+TGG | + | chr6_1:54543719-54543738 | Msa0888990:intron | 30.0% |
| ! | TGTCATAAATCCTTGTTTGT+GGG | + | chr6_1:54543853-54543872 | Msa0888990:three_prime_UTR | 30.0% |
| GTAATTTAGACATAAGGCTT+TGG | - | chr6_1:54543946-54543965 | None:intergenic | 30.0% | |
| ! | TTTGTTAGCATTGAATTGAG+AGG | - | chr6_1:54543993-54544012 | None:intergenic | 30.0% |
| CTGTCTCAATATGCAAATAA+TGG | + | chr6_1:54542776-54542795 | Msa0888990:five_prime_UTR | 30.0% | |
| AAAGTCACAAATAGTTGTTG+AGG | + | chr6_1:54542876-54542895 | Msa0888990:five_prime_UTR | 30.0% | |
| !!! | TATTTTGGTTTTATGAGGAG+AGG | - | chr6_1:54542927-54542946 | None:intergenic | 30.0% |
| ! | CAATGTGATTTTTATGAAGG+AGG | - | chr6_1:54543020-54543039 | None:intergenic | 30.0% |
| TCAGAAGCTAAATCAATCTT+TGG | - | chr6_1:54543165-54543184 | None:intergenic | 30.0% | |
| ATATGTACGAATCCAAATCT+TGG | + | chr6_1:54543329-54543348 | Msa0888990:intron | 30.0% | |
| ! | GAGGTTTTCATGTTAAATCT+TGG | + | chr6_1:54543595-54543614 | Msa0888990:intron | 30.0% |
| GAACTCATCAAAATGTTGAT+TGG | + | chr6_1:54543697-54543716 | Msa0888990:intron | 30.0% | |
| ! | GGTTTTCAGATGATTCAAAA+TGG | + | chr6_1:54543719-54543738 | Msa0888990:intron | 30.0% |
| ! | TGTCATAAATCCTTGTTTGT+GGG | + | chr6_1:54543853-54543872 | Msa0888990:three_prime_UTR | 30.0% |
| GTAATTTAGACATAAGGCTT+TGG | - | chr6_1:54543946-54543965 | None:intergenic | 30.0% | |
| ! | TTTGTTAGCATTGAATTGAG+AGG | - | chr6_1:54543993-54544012 | None:intergenic | 30.0% |
| TTTGTACAAGAATGTTGGGT+TGG | - | chr6_1:54542968-54542987 | None:intergenic | 35.0% | |
| AACACCAAGATGAACCTTAA+AGG | - | chr6_1:54543090-54543109 | None:intergenic | 35.0% | |
| AGCTTCTGATGATTCAATTG+AGG | + | chr6_1:54543176-54543195 | Msa0888990:CDS | 35.0% | |
| GTTGATTGGGTTTATAGATG+AGG | + | chr6_1:54543576-54543595 | Msa0888990:intron | 35.0% | |
| !! | ATTTTGGGTATTCGTTGACA+TGG | + | chr6_1:54543742-54543761 | Msa0888990:CDS | 35.0% |
| GGTATCTATGGAGAAATTTG+AGG | + | chr6_1:54543774-54543793 | Msa0888990:CDS | 35.0% | |
| ATTGAGTCCCTAATTCTTAG+AGG | - | chr6_1:54543828-54543847 | None:intergenic | 35.0% | |
| ! | GTGTCATAAATCCTTGTTTG+TGG | + | chr6_1:54543852-54543871 | Msa0888990:three_prime_UTR | 35.0% |
| TATTCTTGAACCCACAAACA+AGG | - | chr6_1:54543866-54543885 | None:intergenic | 35.0% | |
| GTGGGTTCAAGAATAATCTT+TGG | + | chr6_1:54543871-54543890 | Msa0888990:three_prime_UTR | 35.0% | |
| TTTGTACAAGAATGTTGGGT+TGG | - | chr6_1:54542968-54542987 | None:intergenic | 35.0% | |
| AACACCAAGATGAACCTTAA+AGG | - | chr6_1:54543090-54543109 | None:intergenic | 35.0% | |
| AGCTTCTGATGATTCAATTG+AGG | + | chr6_1:54543176-54543195 | Msa0888990:CDS | 35.0% | |
| GTTGATTGGGTTTATAGATG+AGG | + | chr6_1:54543576-54543595 | Msa0888990:intron | 35.0% | |
| !! | ATTTTGGGTATTCGTTGACA+TGG | + | chr6_1:54543742-54543761 | Msa0888990:CDS | 35.0% |
| GGTATCTATGGAGAAATTTG+AGG | + | chr6_1:54543774-54543793 | Msa0888990:CDS | 35.0% | |
| ATTGAGTCCCTAATTCTTAG+AGG | - | chr6_1:54543828-54543847 | None:intergenic | 35.0% | |
| ! | GTGTCATAAATCCTTGTTTG+TGG | + | chr6_1:54543852-54543871 | Msa0888990:three_prime_UTR | 35.0% |
| TATTCTTGAACCCACAAACA+AGG | - | chr6_1:54543866-54543885 | None:intergenic | 35.0% | |
| GTGGGTTCAAGAATAATCTT+TGG | + | chr6_1:54543871-54543890 | Msa0888990:three_prime_UTR | 35.0% | |
| TGCAAATAATGGCATGCAGT+TGG | + | chr6_1:54542787-54542806 | Msa0888990:five_prime_UTR | 40.0% | |
| !!! | TGGTTTTATGAGGAGAGGAA+AGG | - | chr6_1:54542922-54542941 | None:intergenic | 40.0% |
| AGAGAGAGATGTGTCCTTTA+AGG | + | chr6_1:54543073-54543092 | Msa0888990:exon | 40.0% | |
| !! | GTGTCCTTTAAGGTTCATCT+TGG | + | chr6_1:54543083-54543102 | Msa0888990:CDS | 40.0% |
| ! | AGGTTACTTTGCATGGAGAA+CGG | + | chr6_1:54543128-54543147 | Msa0888990:CDS | 40.0% |
| TGCAAATAATGGCATGCAGT+TGG | + | chr6_1:54542787-54542806 | Msa0888990:five_prime_UTR | 40.0% | |
| !!! | TGGTTTTATGAGGAGAGGAA+AGG | - | chr6_1:54542922-54542941 | None:intergenic | 40.0% |
| AGAGAGAGATGTGTCCTTTA+AGG | + | chr6_1:54543073-54543092 | Msa0888990:exon | 40.0% | |
| !! | GTGTCCTTTAAGGTTCATCT+TGG | + | chr6_1:54543083-54543102 | Msa0888990:CDS | 40.0% |
| ! | AGGTTACTTTGCATGGAGAA+CGG | + | chr6_1:54543128-54543147 | Msa0888990:CDS | 40.0% |
| !! | CATCTTGGTGTTCTTCTCTG+CGG | + | chr6_1:54543098-54543117 | Msa0888990:CDS | 45.0% |
| ! | TTCTGGCAGGTTACTTTGCA+TGG | + | chr6_1:54543121-54543140 | Msa0888990:CDS | 45.0% |
| GTATTCGTTGACATGGCTAG+TGG | + | chr6_1:54543749-54543768 | Msa0888990:CDS | 45.0% | |
| !! | TGGCTAGTGGAAGGTATCTA+TGG | + | chr6_1:54543762-54543781 | Msa0888990:CDS | 45.0% |
| !! | CATCTTGGTGTTCTTCTCTG+CGG | + | chr6_1:54543098-54543117 | Msa0888990:CDS | 45.0% |
| ! | TTCTGGCAGGTTACTTTGCA+TGG | + | chr6_1:54543121-54543140 | Msa0888990:CDS | 45.0% |
| GTATTCGTTGACATGGCTAG+TGG | + | chr6_1:54543749-54543768 | Msa0888990:CDS | 45.0% | |
| !! | TGGCTAGTGGAAGGTATCTA+TGG | + | chr6_1:54543762-54543781 | Msa0888990:CDS | 45.0% |
| !!! | TTTTTTTTTTTTTGATATTT+TGG | - | chr6_1:54542942-54542961 | None:intergenic | 5.0% |
| !!! | TTTTTTTTTTTTTGATATTT+TGG | - | chr6_1:54542942-54542961 | None:intergenic | 5.0% |
| TCGTTGACATGGCTAGTGGA+AGG | + | chr6_1:54543753-54543772 | Msa0888990:CDS | 50.0% | |
| TCGTTGACATGGCTAGTGGA+AGG | + | chr6_1:54543753-54543772 | Msa0888990:CDS | 50.0% | |
| GGTGTTCTTCTCTGCGGTTC+TGG | + | chr6_1:54543104-54543123 | Msa0888990:CDS | 55.0% | |
| ! | TTCTTCTCTGCGGTTCTGGC+AGG | + | chr6_1:54543108-54543127 | Msa0888990:CDS | 55.0% |
| GGTGTTCTTCTCTGCGGTTC+TGG | + | chr6_1:54543104-54543123 | Msa0888990:CDS | 55.0% | |
| ! | TTCTTCTCTGCGGTTCTGGC+AGG | + | chr6_1:54543108-54543127 | Msa0888990:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 54542769 | 54544051 | 54542769 | ID=Msa0888990;Name=Msa0888990 |
| chr6_1 | mRNA | 54542769 | 54544051 | 54542769 | ID=Msa0888990-mRNA-1;Parent=Msa0888990;Name=Msa0888990-mRNA-1;_AED=0.02;_eAED=0.02;_QI=312|1|1|1|1|1|2|213|90 |
| chr6_1 | exon | 54542769 | 54543242 | 54542769 | ID=Msa0888990-mRNA-1:exon:10972;Parent=Msa0888990-mRNA-1 |
| chr6_1 | exon | 54543728 | 54544051 | 54543728 | ID=Msa0888990-mRNA-1:exon:10973;Parent=Msa0888990-mRNA-1 |
| chr6_1 | five_prime_UTR | 54542769 | 54543080 | 54542769 | ID=Msa0888990-mRNA-1:five_prime_utr;Parent=Msa0888990-mRNA-1 |
| chr6_1 | CDS | 54543081 | 54543242 | 54543081 | ID=Msa0888990-mRNA-1:cds;Parent=Msa0888990-mRNA-1 |
| chr6_1 | CDS | 54543728 | 54543838 | 54543728 | ID=Msa0888990-mRNA-1:cds;Parent=Msa0888990-mRNA-1 |
| chr6_1 | three_prime_UTR | 54543839 | 54544051 | 54543839 | ID=Msa0888990-mRNA-1:three_prime_utr;Parent=Msa0888990-mRNA-1 |
| Gene Sequence |
| Protein sequence |
