Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0502230 | XP_003600192.2 | 92.816 | 348 | 18 | 2 | 1 | 345 | 1 | 344 | 0.0 | 602 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0502230 | sp|O74503|UAF30_SCHPO | 41.837 | 98 | 55 | 1 | 151 | 246 | 105 | 202 | 9.86e-16 | 79.0 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0502230 | G7J046 | 92.816 | 348 | 18 | 2 | 1 | 345 | 1 | 344 | 0.0 | 602 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0502230 | TR | SWI/SNF-BAF60b |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0089360 | Msa0502230 | 0.800097 | 1.690545e-48 | -8.615850e-47 |
| Msa0140780 | Msa0502230 | 0.810222 | 1.283072e-50 | -8.615850e-47 |
| Msa0183050 | Msa0502230 | 0.810992 | 8.748552e-51 | -8.615850e-47 |
| Msa0243100 | Msa0502230 | 0.821142 | 4.724942e-53 | -8.615850e-47 |
| Msa0287650 | Msa0502230 | 0.820537 | 6.508082e-53 | -8.615850e-47 |
| Msa0502230 | Msa0647980 | 0.803744 | 3.012546e-49 | -8.615850e-47 |
| Msa0502230 | Msa0655560 | 0.802909 | 4.484249e-49 | -8.615850e-47 |
| Msa0502230 | Msa0667050 | 0.807273 | 5.479610e-50 | -8.615850e-47 |
| Msa0502230 | Msa0933230 | 0.801058 | 1.076738e-48 | -8.615850e-47 |
| Msa0502230 | Msa0933310 | 0.810931 | 9.016311e-51 | -8.615850e-47 |
| Msa0502230 | Msa0964310 | 0.800258 | 1.568444e-48 | -8.615850e-47 |
| Msa0502230 | Msa0971090 | 0.806111 | 9.637998e-50 | -8.615850e-47 |
| Msa0502230 | Msa1010350 | 0.805889 | 1.073305e-49 | -8.615850e-47 |
| Msa0502230 | Msa1078170 | 0.810488 | 1.124323e-50 | -8.615850e-47 |
| Msa0502230 | Msa1085260 | 0.803738 | 3.020446e-49 | -8.615850e-47 |
| Msa0502230 | Msa1303240 | 0.808490 | 3.018437e-50 | -8.615850e-47 |
| Msa0502230 | Msa1303250 | 0.806148 | 9.466568e-50 | -8.615850e-47 |
| Msa0502230 | Msa1353980 | 0.805528 | 1.277946e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0502230 | MtrunA17_Chr3g0100321 | 92.816 | 348 | 18 | 2 | 1 | 345 | 1 | 344 | 0.0 | 602 |
| Msa0502230 | MtrunA17_Chr5g0402651 | 39.151 | 212 | 91 | 4 | 163 | 341 | 134 | 340 | 1.62e-45 | 158 |
| Msa0502230 | MtrunA17_Chr5g0402651 | 36.082 | 97 | 62 | 0 | 143 | 239 | 247 | 343 | 6.59e-15 | 74.7 |
| Msa0502230 | MtrunA17_Chr5g0408111 | 39.785 | 93 | 55 | 1 | 145 | 236 | 39 | 131 | 3.94e-17 | 77.0 |
| Msa0502230 | MtrunA17_Chr5g0393651 | 41.111 | 90 | 51 | 2 | 148 | 236 | 54 | 142 | 6.49e-15 | 71.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0502230 | AT4G22360.1 | 43.112 | 392 | 165 | 10 | 4 | 345 | 2 | 385 | 4.56e-95 | 288 |
| Msa0502230 | AT3G19080.4 | 41.905 | 210 | 99 | 4 | 151 | 341 | 255 | 460 | 1.38e-48 | 170 |
| Msa0502230 | AT3G19080.4 | 46.591 | 88 | 45 | 1 | 151 | 238 | 108 | 193 | 7.38e-21 | 93.6 |
| Msa0502230 | AT3G19080.4 | 43.750 | 64 | 36 | 0 | 176 | 239 | 400 | 463 | 6.44e-13 | 69.7 |
| Msa0502230 | AT3G19080.3 | 41.905 | 210 | 99 | 4 | 151 | 341 | 255 | 460 | 1.38e-48 | 170 |
| Msa0502230 | AT3G19080.3 | 46.591 | 88 | 45 | 1 | 151 | 238 | 108 | 193 | 7.38e-21 | 93.6 |
| Msa0502230 | AT3G19080.3 | 43.750 | 64 | 36 | 0 | 176 | 239 | 400 | 463 | 6.44e-13 | 69.7 |
| Msa0502230 | AT3G19080.1 | 40.865 | 208 | 102 | 4 | 151 | 341 | 255 | 458 | 2.87e-46 | 164 |
| Msa0502230 | AT3G19080.1 | 46.591 | 88 | 45 | 1 | 151 | 238 | 108 | 193 | 8.42e-21 | 93.6 |
| Msa0502230 | AT3G19080.1 | 43.750 | 64 | 36 | 0 | 176 | 239 | 398 | 461 | 6.77e-13 | 69.7 |
| Msa0502230 | AT3G19080.2 | 43.931 | 173 | 74 | 4 | 151 | 304 | 255 | 423 | 4.02e-38 | 141 |
| Msa0502230 | AT3G19080.2 | 46.591 | 88 | 45 | 1 | 151 | 238 | 108 | 193 | 1.11e-20 | 92.8 |
| Msa0502230 | AT1G49520.1 | 31.489 | 235 | 111 | 5 | 151 | 339 | 94 | 324 | 1.66e-33 | 127 |
| Msa0502230 | AT1G49520.1 | 48.333 | 120 | 54 | 2 | 148 | 261 | 240 | 357 | 1.04e-29 | 117 |
| Msa0502230 | AT2G14880.1 | 35.714 | 126 | 80 | 1 | 112 | 236 | 16 | 141 | 8.21e-19 | 82.0 |
| Msa0502230 | AT4G34290.1 | 41.250 | 80 | 46 | 1 | 158 | 236 | 65 | 144 | 2.78e-15 | 72.4 |
| Msa0502230 | AT2G35605.1 | 36.364 | 99 | 61 | 2 | 139 | 235 | 7 | 105 | 1.65e-14 | 69.3 |
| Msa0502230 | AT2G35605.1 | 41.667 | 72 | 39 | 2 | 270 | 340 | 36 | 105 | 4.21e-12 | 62.8 |
| Msa0502230 | AT3G03590.1 | 37.179 | 78 | 48 | 1 | 160 | 236 | 63 | 140 | 1.24e-13 | 67.8 |
Find 92 sgRNAs with CRISPR-Local
Find 349 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTTCTACCTTCTGTTTCTT+TGG | 0.162830 | 3_4:-44292614 | None:intergenic |
| ATAGCATGAGTCATGATTTA+AGG | 0.231163 | 3_4:-44295208 | None:intergenic |
| CCTGGCCCACCTCTTCTCTT+TGG | 0.232095 | 3_4:-44292147 | None:intergenic |
| CTTCTACCTTCTGTTTCTTT+GGG | 0.237243 | 3_4:-44292613 | None:intergenic |
| ACCTCAGTCCTTGGCATTGC+TGG | 0.239037 | 3_4:-44292225 | None:intergenic |
| GTAGTGAATGTTCTTGTTCT+AGG | 0.242603 | 3_4:-44289978 | None:intergenic |
| ACAGGGACAGAATGGGAATT+AGG | 0.246973 | 3_4:-44290224 | None:intergenic |
| CATTCTGTCCCTGTTAGTTC+TGG | 0.268792 | 3_4:+44290233 | Msa0502230:CDS |
| ATGTATAATCTTCTGATAAT+AGG | 0.269379 | 3_4:+44295169 | Msa0502230:three_prime_UTR |
| CAGAGGTTCTGAGACGTATC+TGG | 0.269452 | 3_4:+44292741 | Msa0502230:CDS |
| AGAAGGAACAACTTTACTTT+TGG | 0.271743 | 3_4:+44295067 | Msa0502230:three_prime_UTR |
| TTCAAGATCCTAGCAATAAA+AGG | 0.297134 | 3_4:+44292388 | Msa0502230:CDS |
| TGGTGTTTCGCCTGAACTTC+AGG | 0.324608 | 3_4:+44292188 | Msa0502230:CDS |
| CAGGGACAGAATGGGAATTA+GGG | 0.330301 | 3_4:-44290223 | None:intergenic |
| ATCTTGACTACATGTTGATA+TGG | 0.338380 | 3_4:+44294979 | Msa0502230:three_prime_UTR |
| GCAAAGCTTCAGGAGATCTT+TGG | 0.344392 | 3_4:+44293457 | Msa0502230:CDS |
| TCTTTCTCTTTCTGTCTCTC+TGG | 0.349042 | 3_4:-44289794 | None:intergenic |
| CCACCTCTTCTCTTTGGCTT+AGG | 0.349409 | 3_4:-44292141 | None:intergenic |
| CCTGAACTTCAGGTCATTGT+TGG | 0.353643 | 3_4:+44292198 | Msa0502230:CDS |
| AAGATCAGCTTGTACTATAC+TGG | 0.361972 | 3_4:-44294961 | None:intergenic |
| GTTCAAGATGAATAAGTTAC+TGG | 0.364033 | 3_4:+44292467 | Msa0502230:CDS |
| ACCTTCTGTTTCTTTGGGGC+AGG | 0.373808 | 3_4:-44292608 | None:intergenic |
| TTTAAACTGAAACTAATTAA+CGG | 0.374779 | 3_4:-44289846 | None:intergenic |
| TTACGAAAACCAGAACTAAC+AGG | 0.375629 | 3_4:-44290242 | None:intergenic |
| CAGTCCTTGGCATTGCTGGC+TGG | 0.378386 | 3_4:-44292221 | None:intergenic |
| AAATAAAACTAACCTTTCCT+TGG | 0.382535 | 3_4:-44290345 | None:intergenic |
| ATGATGCTGACAACATTCTA+TGG | 0.385466 | 3_4:+44293546 | Msa0502230:exon |
| TGATGACGGCCCAATACTTC+AGG | 0.388126 | 3_4:-44293508 | None:intergenic |
| AATGTGTGATGCAAAGCTTC+AGG | 0.389346 | 3_4:+44293447 | Msa0502230:CDS |
| TGTGAAAGCATTTCAGCGTT+GGG | 0.397157 | 3_4:+44293481 | Msa0502230:CDS |
| TCTGCTGCTGTTGCTTCTGA+TGG | 0.407509 | 3_4:+44290281 | Msa0502230:CDS |
| TCATAAGATTGATTTCATTA+CGG | 0.416190 | 3_4:+44290055 | Msa0502230:CDS |
| GTCTTGTGGTTTGTCTAACT+TGG | 0.417429 | 3_4:+44295110 | Msa0502230:three_prime_UTR |
| GACACTTACTGGTTGGTTCA+AGG | 0.428875 | 3_4:-44292506 | None:intergenic |
| AGAGAAAGTTGAGTTCGAAA+TGG | 0.437384 | 3_4:+44289896 | Msa0502230:exon |
| CCAACAATGACCTGAAGTTC+AGG | 0.437958 | 3_4:-44292198 | None:intergenic |
| GTTGGGGATACCTGAAGTAT+TGG | 0.445363 | 3_4:+44293498 | Msa0502230:CDS |
| TCAGTTATCAACATGAACTA+AGG | 0.447768 | 3_4:-44295035 | None:intergenic |
| ACAGAAGGTAGAAGTGGAGG+TGG | 0.456299 | 3_4:+44292622 | Msa0502230:CDS |
| GTTTGTCTAACTTGGCACTT+AGG | 0.456404 | 3_4:+44295118 | Msa0502230:three_prime_UTR |
| CCAAAGAGAAGAGGTGGGCC+AGG | 0.457587 | 3_4:+44292147 | Msa0502230:CDS |
| TAGTGAATGTTCTTGTTCTA+GGG | 0.461545 | 3_4:-44289977 | None:intergenic |
| TTGGGGATACCTGAAGTATT+GGG | 0.462750 | 3_4:+44293499 | Msa0502230:CDS |
| AATAAAACTAACCTTTCCTT+GGG | 0.475091 | 3_4:-44290344 | None:intergenic |
| CAGAACTAACAGGGACAGAA+TGG | 0.475549 | 3_4:-44290232 | None:intergenic |
| ATAACTGATGACTTAGTAGA+AGG | 0.479453 | 3_4:+44295050 | Msa0502230:three_prime_UTR |
| TCAGAGCTTCAATCTAAACT+TGG | 0.482612 | 3_4:+44290017 | Msa0502230:CDS |
| ACACTTACTGGTTGGTTCAA+GGG | 0.489866 | 3_4:-44292505 | None:intergenic |
| GAGCTTCAATCTAAACTTGG+TGG | 0.498120 | 3_4:+44290020 | Msa0502230:CDS |
| ATCTGTTGCTTACCTCTAGC+TGG | 0.502557 | 3_4:-44292781 | None:intergenic |
| GCATCACACATTATTGCCAT+AGG | 0.502699 | 3_4:-44293436 | None:intergenic |
| CTGTGAAAGCATTTCAGCGT+TGG | 0.504171 | 3_4:+44293480 | Msa0502230:CDS |
| CAAAGTTTGTTGAGACCTCC+TGG | 0.504237 | 3_4:-44292165 | None:intergenic |
| GTGGAGGTTGTTGTAACTGC+TGG | 0.508571 | 3_4:-44290142 | None:intergenic |
| GGAGGTCTCAACAAACTTTG+TGG | 0.509262 | 3_4:+44292168 | Msa0502230:CDS |
| ATTACAGAAGGAGTAGGAGC+AGG | 0.516633 | 3_4:-44292662 | None:intergenic |
| GTAGGATCCTGTGAATCCTA+TGG | 0.516880 | 3_4:+44293420 | Msa0502230:intron |
| AGTTGTTGTTGAGGTGGTGG+AGG | 0.517315 | 3_4:-44290158 | None:intergenic |
| ATTGAAGCTCTGAAACAACT+TGG | 0.527269 | 3_4:-44290007 | None:intergenic |
| ATTGCACAAACCTCAGTCCT+TGG | 0.533376 | 3_4:-44292234 | None:intergenic |
| TTCTACCTTCTGTTTCTTTG+GGG | 0.537116 | 3_4:-44292612 | None:intergenic |
| ATTATTGCCATAGGATTCAC+AGG | 0.541812 | 3_4:-44293427 | None:intergenic |
| CCTTTCCTTGGGAAGCACAT+TGG | 0.545092 | 3_4:-44290333 | None:intergenic |
| ATAAGTTGTTGTTGAGGTGG+TGG | 0.546802 | 3_4:-44290161 | None:intergenic |
| AAAGAAACAGAAGGTAGAAG+TGG | 0.549856 | 3_4:+44292616 | Msa0502230:CDS |
| CCTAAGCCAAAGAGAAGAGG+TGG | 0.550410 | 3_4:+44292141 | Msa0502230:CDS |
| AGAGGTTCTGAGACGTATCT+GGG | 0.551085 | 3_4:+44292742 | Msa0502230:CDS |
| AGAACTAACAGGGACAGAAT+GGG | 0.551168 | 3_4:-44290231 | None:intergenic |
| AAAGAAATAAGTTGTTGTTG+AGG | 0.551177 | 3_4:-44290167 | None:intergenic |
| GATATTATTACAGAAGGAGT+AGG | 0.560211 | 3_4:-44292668 | None:intergenic |
| TTCTGCCAATGTGCTTCCCA+AGG | 0.564524 | 3_4:+44290328 | Msa0502230:CDS |
| CAGCCTAAGCCAAAGAGAAG+AGG | 0.603240 | 3_4:+44292138 | Msa0502230:CDS |
| CCAATGTGCTTCCCAAGGAA+AGG | 0.603566 | 3_4:+44290333 | Msa0502230:CDS |
| CAGTTATCAACATGAACTAA+GGG | 0.604874 | 3_4:-44295034 | None:intergenic |
| CTTAGGTTAGAGTGACATGT+TGG | 0.606178 | 3_4:+44295135 | Msa0502230:three_prime_UTR |
| TTGGCCAGCCAGCAATGCCA+AGG | 0.609629 | 3_4:+44292217 | Msa0502230:CDS |
| GAAACAGAAGGTAGAAGTGG+AGG | 0.610921 | 3_4:+44292619 | Msa0502230:CDS |
| GTGAAAGCATTTCAGCGTTG+GGG | 0.616279 | 3_4:+44293482 | Msa0502230:CDS |
| GAAATAAGTTGTTGTTGAGG+TGG | 0.616298 | 3_4:-44290164 | None:intergenic |
| GAATCAGATATTATTACAGA+AGG | 0.623638 | 3_4:-44292674 | None:intergenic |
| GCCAGCAATGCCAAGGACTG+AGG | 0.626383 | 3_4:+44292224 | Msa0502230:CDS |
| AAGAGAAGAGGTGGGCCAGG+AGG | 0.630229 | 3_4:+44292150 | Msa0502230:CDS |
| GCCTGCCCCAAAGAAACAGA+AGG | 0.639243 | 3_4:+44292607 | Msa0502230:CDS |
| CTAAGCCAAAGAGAAGAGGT+GGG | 0.646298 | 3_4:+44292142 | Msa0502230:CDS |
| TACGAAAACCAGAACTAACA+GGG | 0.651580 | 3_4:-44290241 | None:intergenic |
| TTAGATTGTGAAGCAACTGT+GGG | 0.655273 | 3_4:+44292344 | Msa0502230:intron |
| CATTAAAGTCAACCAGCTAG+AGG | 0.656824 | 3_4:+44292769 | Msa0502230:CDS |
| TTTAGATTGTGAAGCAACTG+TGG | 0.662946 | 3_4:+44292343 | Msa0502230:intron |
| CAGAAGGTAGAAGTGGAGGT+GGG | 0.682865 | 3_4:+44292623 | Msa0502230:CDS |
| AAGGGAGATGTTACAGACAG+AGG | 0.685952 | 3_4:+44292724 | Msa0502230:CDS |
| ACTGCGTGTGGTGTTTGAGA+CGG | 0.710853 | 3_4:+44292431 | Msa0502230:CDS |
| TTGCAACGATGAACTGCGTG+TGG | 0.712023 | 3_4:+44292419 | Msa0502230:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTATTGTTTTTGAAA+TGG | + | chr3_4:44290613-44290632 | Msa0502230:intron | 10.0% |
| !! | AATATAATAATAACAAAGAT+AGG | - | chr3_4:44293759-44293778 | None:intergenic | 10.0% |
| !! | TTTAAACTGAAACTAATTAA+CGG | - | chr3_4:44289849-44289868 | None:intergenic | 15.0% |
| !!! | GTTTTTTTATGTTGTAATTT+TGG | + | chr3_4:44290730-44290749 | Msa0502230:intron | 15.0% |
| !!! | AATTTTCTGTTTTGAATTAT+TGG | + | chr3_4:44291176-44291195 | Msa0502230:intron | 15.0% |
| !! | AATTATTGGAGTTATATAAT+GGG | + | chr3_4:44291190-44291209 | Msa0502230:intron | 15.0% |
| !! | TATAAAGAACAAATTATGTA+TGG | + | chr3_4:44293346-44293365 | Msa0502230:intron | 15.0% |
| !!! | CTTTGTTATTATTATATTTC+AGG | + | chr3_4:44293761-44293780 | Msa0502230:intron | 15.0% |
| !! | TTGAAAAAGGTTAAAATATT+TGG | + | chr3_4:44294487-44294506 | Msa0502230:intron | 15.0% |
| !!! | TCATAAGATTGATTTCATTA+CGG | + | chr3_4:44290055-44290074 | Msa0502230:CDS | 20.0% |
| !!! | GTTGTAATTTTGGAAATAAA+TGG | + | chr3_4:44290740-44290759 | Msa0502230:intron | 20.0% |
| !! | AATAAATGGTAAGAAAGATA+TGG | + | chr3_4:44290754-44290773 | Msa0502230:intron | 20.0% |
| !!! | AAATGAGGTTTTTTTTTGAA+AGG | + | chr3_4:44290887-44290906 | Msa0502230:intron | 20.0% |
| !! | GAATTATTGGAGTTATATAA+TGG | + | chr3_4:44291189-44291208 | Msa0502230:intron | 20.0% |
| !! | ACAAAACAAAAATCTCATTT+CGG | - | chr3_4:44291442-44291461 | None:intergenic | 20.0% |
| !!! | ATTTTTGTTTTGTAGTTGTT+AGG | + | chr3_4:44291449-44291468 | Msa0502230:intron | 20.0% |
| !!! | TTTTTGTTTTGTAGTTGTTA+GGG | + | chr3_4:44291450-44291469 | Msa0502230:intron | 20.0% |
| !! | AAATGAAATATTTCGTTGTT+GGG | + | chr3_4:44291484-44291503 | Msa0502230:intron | 20.0% |
| !! | CAATTTACATATTATAAACG+TGG | + | chr3_4:44292285-44292304 | Msa0502230:intron | 20.0% |
| !!! | TTTATAATTTGTGGATTGAA+TGG | + | chr3_4:44292320-44292339 | Msa0502230:intron | 20.0% |
| !! | GGTAATATTTCATAAAATTG+TGG | + | chr3_4:44292537-44292556 | Msa0502230:intron | 20.0% |
| !! | TATTTAACTGTTAAGTCAAT+TGG | + | chr3_4:44293676-44293695 | Msa0502230:intron | 20.0% |
| !! | TACTTCTATAAAATTAAGCA+TGG | + | chr3_4:44293815-44293834 | Msa0502230:intron | 20.0% |
| !! | TTATTGAGAAACATAACAAA+AGG | + | chr3_4:44293862-44293881 | Msa0502230:intron | 20.0% |
| !!! | ATAGTTTCTTCTAGTTATAT+TGG | + | chr3_4:44293924-44293943 | Msa0502230:intron | 20.0% |
| !!! | CTTAATTTGAAACATGTAAA+GGG | + | chr3_4:44294021-44294040 | Msa0502230:intron | 20.0% |
| !!! | ATATTTTAACCTTTTTCAAG+TGG | - | chr3_4:44294486-44294505 | None:intergenic | 20.0% |
| !! | ACAAACTGTTAATTATCAAA+GGG | - | chr3_4:44294836-44294855 | None:intergenic | 20.0% |
| !! | AACAAACTGTTAATTATCAA+AGG | - | chr3_4:44294837-44294856 | None:intergenic | 20.0% |
| !!! | AACTTGATAACATGAAATAT+TGG | + | chr3_4:44294902-44294921 | Msa0502230:intron | 20.0% |
| !!! | TAACATGAAATATTGGTTTT+TGG | + | chr3_4:44294909-44294928 | Msa0502230:intron | 20.0% |
| !! | ATGTATAATCTTCTGATAAT+AGG | + | chr3_4:44295169-44295188 | Msa0502230:three_prime_UTR | 20.0% |
| !! | AAAGAAATAAGTTGTTGTTG+AGG | - | chr3_4:44290170-44290189 | None:intergenic | 25.0% |
| ! | AATAAAACTAACCTTTCCTT+GGG | - | chr3_4:44290347-44290366 | None:intergenic | 25.0% |
| ! | AAATAAAACTAACCTTTCCT+TGG | - | chr3_4:44290348-44290367 | None:intergenic | 25.0% |
| !! | ATCTTTGCAATTTTAAGCTA+TGG | - | chr3_4:44290487-44290506 | None:intergenic | 25.0% |
| ! | AAAGATTAATCCATCAAGTA+AGG | + | chr3_4:44290501-44290520 | Msa0502230:intron | 25.0% |
| ! | AAGATTAATCCATCAAGTAA+GGG | + | chr3_4:44290502-44290521 | Msa0502230:intron | 25.0% |
| ! | TCGTATATGATAGAACATTA+TGG | + | chr3_4:44290801-44290820 | Msa0502230:intron | 25.0% |
| !!! | TCATTGTAATTTTGGAAATG+AGG | + | chr3_4:44290872-44290891 | Msa0502230:intron | 25.0% |
| !!! | AGTTATGTTTTGTTATGCAA+TGG | + | chr3_4:44290973-44290992 | Msa0502230:intron | 25.0% |
| !! | ATTTTATCCATCTTAGCATA+AGG | - | chr3_4:44291159-44291178 | None:intergenic | 25.0% |
| !!! | TTTTATTTGAGCTTATCTAC+TGG | + | chr3_4:44291225-44291244 | Msa0502230:intron | 25.0% |
| !!! | AAGTCATAAGTTGTTTTCAT+AGG | - | chr3_4:44291281-44291300 | None:intergenic | 25.0% |
| ! | GAAATGAAATATTTCGTTGT+TGG | + | chr3_4:44291483-44291502 | Msa0502230:intron | 25.0% |
| !! | TTTTGAACGAAATATTCAAG+TGG | + | chr3_4:44291558-44291577 | Msa0502230:intron | 25.0% |
| ! | ATGTTTATGAAAATGATACG+TGG | + | chr3_4:44291649-44291668 | Msa0502230:intron | 25.0% |
| ! | AATAGCAGATTGTTGAAATT+CGG | + | chr3_4:44291766-44291785 | Msa0502230:intron | 25.0% |
| ! | CCACAAATTATAAATCTTGA+TGG | - | chr3_4:44292314-44292333 | None:intergenic | 25.0% |
| ! | CCATCAAGATTTATAATTTG+TGG | + | chr3_4:44292311-44292330 | Msa0502230:intron | 25.0% |
| !! | ATTATCTTCCTTTTATTGCT+AGG | - | chr3_4:44292399-44292418 | None:intergenic | 25.0% |
| ! | GAATCAGATATTATTACAGA+AGG | - | chr3_4:44292677-44292696 | None:intergenic | 25.0% |
| ! | TAGAGCTCTATGAATAAATT+AGG | - | chr3_4:44293150-44293169 | None:intergenic | 25.0% |
| !! | ATTCATAGAGCTCTAATATT+TGG | + | chr3_4:44293155-44293174 | Msa0502230:intron | 25.0% |
| ! | GTAAAAGTTTATCTTCAACA+CGG | + | chr3_4:44293269-44293288 | Msa0502230:intron | 25.0% |
| ! | CTCACTCTTGTAATTATAAA+GGG | - | chr3_4:44293952-44293971 | None:intergenic | 25.0% |
| ! | TCTCACTCTTGTAATTATAA+AGG | - | chr3_4:44293953-44293972 | None:intergenic | 25.0% |
| ! | CAATGTTAAATTGCTAATGA+AGG | - | chr3_4:44293981-44294000 | None:intergenic | 25.0% |
| !! | GCTTAATTTGAAACATGTAA+AGG | + | chr3_4:44294020-44294039 | Msa0502230:intron | 25.0% |
| !! | TATTCAATTACTAGTCTGAT+TGG | - | chr3_4:44294397-44294416 | None:intergenic | 25.0% |
| ! | ATGTACATCACTAATGTAAA+GGG | - | chr3_4:44294712-44294731 | None:intergenic | 25.0% |
| ! | TATGTACATCACTAATGTAA+AGG | - | chr3_4:44294713-44294732 | None:intergenic | 25.0% |
| TAGTGAATGTTCTTGTTCTA+GGG | - | chr3_4:44289980-44289999 | None:intergenic | 30.0% | |
| ! | TGCAATTTTAAGCTATGGTT+TGG | - | chr3_4:44290482-44290501 | None:intergenic | 30.0% |
| !!! | TTTTGAAATGGTTGCATGAA+TGG | + | chr3_4:44290625-44290644 | Msa0502230:intron | 30.0% |
| ! | TTTGAAATGGTTGCATGAAT+GGG | + | chr3_4:44290626-44290645 | Msa0502230:intron | 30.0% |
| AATGAGTCAAATGAGGAAAA+TGG | + | chr3_4:44290650-44290669 | Msa0502230:intron | 30.0% | |
| AAAATGGCATGAATGAAAGA+GGG | + | chr3_4:44290666-44290685 | Msa0502230:intron | 30.0% | |
| !! | AGACTTGGTCATTGTAATTT+TGG | + | chr3_4:44290864-44290883 | Msa0502230:intron | 30.0% |
| !!! | TGAGGTTTTTTTTTGAAAGG+CGG | + | chr3_4:44290890-44290909 | Msa0502230:intron | 30.0% |
| !!! | TTTGTTGTTTTGTCGTAGTT+TGG | + | chr3_4:44290921-44290940 | Msa0502230:intron | 30.0% |
| !!! | TTGTTGTTTTGTCGTAGTTT+GGG | + | chr3_4:44290922-44290941 | Msa0502230:intron | 30.0% |
| TTAAGCTAATCTCATACATC+AGG | - | chr3_4:44291059-44291078 | None:intergenic | 30.0% | |
| !! | AGTTATATAATGGGCATGTT+TGG | + | chr3_4:44291199-44291218 | Msa0502230:intron | 30.0% |
| TTATGCTATAAGCTGAAACA+GGG | + | chr3_4:44291335-44291354 | Msa0502230:intron | 30.0% | |
| AAAAACAGCATGAATGTAAG+AGG | + | chr3_4:44291360-44291379 | Msa0502230:intron | 30.0% | |
| AAAACAGCATGAATGTAAGA+GGG | + | chr3_4:44291361-44291380 | Msa0502230:intron | 30.0% | |
| ATCTACTATCAAATGATGCT+GGG | + | chr3_4:44291535-44291554 | Msa0502230:intron | 30.0% | |
| TTGTCAAATAGCAGTTATAG+CGG | - | chr3_4:44291813-44291832 | None:intergenic | 30.0% | |
| TGATATGATGTGTTATATCC+TGG | + | chr3_4:44292035-44292054 | Msa0502230:intron | 30.0% | |
| TAATTGCTTTCTGTTTGCAA+TGG | + | chr3_4:44292064-44292083 | Msa0502230:intron | 30.0% | |
| TTTCTGTTTGCAATGGTATT+TGG | + | chr3_4:44292071-44292090 | Msa0502230:intron | 30.0% | |
| TTCAAGATCCTAGCAATAAA+AGG | + | chr3_4:44292388-44292407 | Msa0502230:CDS | 30.0% | |
| GTTCAAGATGAATAAGTTAC+TGG | + | chr3_4:44292467-44292486 | Msa0502230:CDS | 30.0% | |
| !! | TGTTTGATTTGTTCATGCTT+TGG | + | chr3_4:44292571-44292590 | Msa0502230:intron | 30.0% |
| GATATTATTACAGAAGGAGT+AGG | - | chr3_4:44292671-44292690 | None:intergenic | 30.0% | |
| !! | GATTCACTTGCTAACTTTTT+CGG | + | chr3_4:44292692-44292711 | Msa0502230:CDS | 30.0% |
| TAAACCAAGATGTTAAAGTG+AGG | - | chr3_4:44292944-44292963 | None:intergenic | 30.0% | |
| TAACATCTTGGTTTAGTACA+TGG | + | chr3_4:44292949-44292968 | Msa0502230:intron | 30.0% | |
| CAGAAAATAATTGCAACGAT+AGG | - | chr3_4:44293076-44293095 | None:intergenic | 30.0% | |
| TGTTACCACAATTCAATCTA+GGG | + | chr3_4:44293096-44293115 | Msa0502230:intron | 30.0% | |
| GCTAAAAGACTTAACATATC+CGG | - | chr3_4:44293128-44293147 | None:intergenic | 30.0% | |
| TTATGTGAACACAAACAGAT+AGG | + | chr3_4:44293201-44293220 | Msa0502230:intron | 30.0% | |
| TGATTCTCTCACAAATAGAT+TGG | + | chr3_4:44293301-44293320 | Msa0502230:intron | 30.0% | |
| TTATGTATGGTGAACTTTGT+TGG | + | chr3_4:44293359-44293378 | Msa0502230:intron | 30.0% | |
| ATCTCCTAAAAATGTGATGA+CGG | - | chr3_4:44293525-44293544 | None:intergenic | 30.0% | |
| !! | AGAAAATAAGAGCACTACAA+AGG | - | chr3_4:44293606-44293625 | None:intergenic | 30.0% |
| AACAAAGATAGGAATTTGCA+GGG | - | chr3_4:44293748-44293767 | None:intergenic | 30.0% | |
| TAACAAAGATAGGAATTTGC+AGG | - | chr3_4:44293749-44293768 | None:intergenic | 30.0% | |
| CAAATTACAACGTGTAACAA+GGG | - | chr3_4:44294140-44294159 | None:intergenic | 30.0% | |
| TCAAATTACAACGTGTAACA+AGG | - | chr3_4:44294141-44294160 | None:intergenic | 30.0% | |
| TTGTTACACGTTGTAATTTG+AGG | + | chr3_4:44294140-44294159 | Msa0502230:intron | 30.0% | |
| ! | TATTGCGTTGTGTTTTATCT+AGG | + | chr3_4:44294244-44294263 | Msa0502230:intron | 30.0% |
| TAATTGAATAGAGACCTTGT+TGG | + | chr3_4:44294407-44294426 | Msa0502230:intron | 30.0% | |
| !!! | TTTAACCTTTTTCAAGTGGT+CGG | - | chr3_4:44294482-44294501 | None:intergenic | 30.0% |
| TTACATTAGTGATGTACATG+AGG | + | chr3_4:44294515-44294534 | Msa0502230:intron | 30.0% | |
| TACATTAGTGATGTACATGA+GGG | + | chr3_4:44294516-44294535 | Msa0502230:intron | 30.0% | |
| !!! | TTACCCTATTTTTACACAAG+AGG | - | chr3_4:44294613-44294632 | None:intergenic | 30.0% |
| TCTTGTGTAAAAATAGGGTA+AGG | + | chr3_4:44294612-44294631 | Msa0502230:intron | 30.0% | |
| TGAGGCACATTCATAAATTA+GGG | - | chr3_4:44294767-44294786 | None:intergenic | 30.0% | |
| ATGAGGCACATTCATAAATT+AGG | - | chr3_4:44294768-44294787 | None:intergenic | 30.0% | |
| GGATAAACACATACAAAATG+AGG | - | chr3_4:44294785-44294804 | None:intergenic | 30.0% | |
| ATCTTGACTACATGTTGATA+TGG | + | chr3_4:44294979-44294998 | Msa0502230:three_prime_UTR | 30.0% | |
| CAGTTATCAACATGAACTAA+GGG | - | chr3_4:44295037-44295056 | None:intergenic | 30.0% | |
| TCAGTTATCAACATGAACTA+AGG | - | chr3_4:44295038-44295057 | None:intergenic | 30.0% | |
| ATAACTGATGACTTAGTAGA+AGG | + | chr3_4:44295050-44295069 | Msa0502230:three_prime_UTR | 30.0% | |
| ! | AGAAGGAACAACTTTACTTT+TGG | + | chr3_4:44295067-44295086 | Msa0502230:three_prime_UTR | 30.0% |
| !! | GAAGGAACAACTTTACTTTT+GGG | + | chr3_4:44295068-44295087 | Msa0502230:three_prime_UTR | 30.0% |
| ATAGCATGAGTCATGATTTA+AGG | - | chr3_4:44295211-44295230 | None:intergenic | 30.0% | |
| AGAGAAAGTTGAGTTCGAAA+TGG | + | chr3_4:44289896-44289915 | Msa0502230:exon | 35.0% | |
| GTAGTGAATGTTCTTGTTCT+AGG | - | chr3_4:44289981-44290000 | None:intergenic | 35.0% | |
| !! | ATTGAAGCTCTGAAACAACT+TGG | - | chr3_4:44290010-44290029 | None:intergenic | 35.0% |
| TCAGAGCTTCAATCTAAACT+TGG | + | chr3_4:44290017-44290036 | Msa0502230:CDS | 35.0% | |
| ! | GAAATAAGTTGTTGTTGAGG+TGG | - | chr3_4:44290167-44290186 | None:intergenic | 35.0% |
| !! | GGAATTAGGGTTTTGATGAA+GGG | - | chr3_4:44290213-44290232 | None:intergenic | 35.0% |
| TACGAAAACCAGAACTAACA+GGG | - | chr3_4:44290244-44290263 | None:intergenic | 35.0% | |
| TTACGAAAACCAGAACTAAC+AGG | - | chr3_4:44290245-44290264 | None:intergenic | 35.0% | |
| GTTGGAAGAGATCTCTTTAA+CGG | + | chr3_4:44290578-44290597 | Msa0502230:intron | 35.0% | |
| TTGAAATGGTTGCATGAATG+GGG | + | chr3_4:44290627-44290646 | Msa0502230:intron | 35.0% | |
| GAAAATGGCATGAATGAAAG+AGG | + | chr3_4:44290665-44290684 | Msa0502230:intron | 35.0% | |
| AAATGGCATGAATGAAAGAG+GGG | + | chr3_4:44290667-44290686 | Msa0502230:intron | 35.0% | |
| !!! | GAGGTTTTTTTTTGAAAGGC+GGG | + | chr3_4:44290891-44290910 | Msa0502230:intron | 35.0% |
| AAATTCAATCTTTCGCGAGT+AGG | + | chr3_4:44291097-44291116 | Msa0502230:intron | 35.0% | |
| !! | GCATTCTAGTTCTACTTGAA+TGG | - | chr3_4:44291131-44291150 | None:intergenic | 35.0% |
| CTTATGCTATAAGCTGAAAC+AGG | + | chr3_4:44291334-44291353 | Msa0502230:intron | 35.0% | |
| TAGTTGTTAGGGTGTAAAGA+GGG | + | chr3_4:44291461-44291480 | Msa0502230:intron | 35.0% | |
| !! | TTCGTTGTTGGGTATTGATA+TGG | + | chr3_4:44291495-44291514 | Msa0502230:intron | 35.0% |
| !! | TGTTGGGTATTGATATGGTA+TGG | + | chr3_4:44291500-44291519 | Msa0502230:intron | 35.0% |
| !! | GTTGGGTATTGATATGGTAT+GGG | + | chr3_4:44291501-44291520 | Msa0502230:intron | 35.0% |
| GATCTACTATCAAATGATGC+TGG | + | chr3_4:44291534-44291553 | Msa0502230:intron | 35.0% | |
| ! | GTGAAAGCTTTATCCTAAGA+TGG | + | chr3_4:44291590-44291609 | Msa0502230:intron | 35.0% |
| ! | TTTTATGTATAGCAGCTAGC+CGG | - | chr3_4:44291919-44291938 | None:intergenic | 35.0% |
| AGAAAGCAATTAACAAGACC+AGG | - | chr3_4:44292056-44292075 | None:intergenic | 35.0% | |
| CAAGATAACAACATGTGTGT+AGG | - | chr3_4:44292111-44292130 | None:intergenic | 35.0% | |
| TTTAGATTGTGAAGCAACTG+TGG | + | chr3_4:44292343-44292362 | Msa0502230:intron | 35.0% | |
| TTAGATTGTGAAGCAACTGT+GGG | + | chr3_4:44292344-44292363 | Msa0502230:intron | 35.0% | |
| ! | TTCTACCTTCTGTTTCTTTG+GGG | - | chr3_4:44292615-44292634 | None:intergenic | 35.0% |
| ! | CTTCTACCTTCTGTTTCTTT+GGG | - | chr3_4:44292616-44292635 | None:intergenic | 35.0% |
| ! | ACTTCTACCTTCTGTTTCTT+TGG | - | chr3_4:44292617-44292636 | None:intergenic | 35.0% |
| AAAGAAACAGAAGGTAGAAG+TGG | + | chr3_4:44292616-44292635 | Msa0502230:CDS | 35.0% | |
| ! | AGAAGAAAAAGCATATGCAC+TGG | - | chr3_4:44292911-44292930 | None:intergenic | 35.0% |
| GTGTTACCACAATTCAATCT+AGG | + | chr3_4:44293095-44293114 | Msa0502230:intron | 35.0% | |
| TTTGACCCTAGATTGAATTG+TGG | - | chr3_4:44293104-44293123 | None:intergenic | 35.0% | |
| ! | ATTCAATCTAGGGTCAAAAC+CGG | + | chr3_4:44293106-44293125 | Msa0502230:intron | 35.0% |
| ! | AGCTCTAATATTTGGCACTT+TGG | + | chr3_4:44293163-44293182 | Msa0502230:intron | 35.0% |
| TGAACACTTGAAGGCAAATA+TGG | + | chr3_4:44293244-44293263 | Msa0502230:intron | 35.0% | |
| ACGACCTTGAATATACTTGT+AGG | + | chr3_4:44293402-44293421 | Msa0502230:intron | 35.0% | |
| GGATCCTACAAGTATATTCA+AGG | - | chr3_4:44293409-44293428 | None:intergenic | 35.0% | |
| ATTATTGCCATAGGATTCAC+AGG | - | chr3_4:44293430-44293449 | None:intergenic | 35.0% | |
| ATGATGCTGACAACATTCTA+TGG | + | chr3_4:44293546-44293565 | Msa0502230:exon | 35.0% | |
| !! | TAAGAGCACTACAAAGGTTA+TGG | - | chr3_4:44293600-44293619 | None:intergenic | 35.0% |
| !! | GAACCTCTTTCAAGTTTCAA+CGG | + | chr3_4:44293626-44293645 | Msa0502230:intron | 35.0% |
| ! | TCAACAGCTTTGTAGAGAAT+AGG | - | chr3_4:44293653-44293672 | None:intergenic | 35.0% |
| TTCAGGATGATATTGTTGCA+TGG | + | chr3_4:44293778-44293797 | Msa0502230:intron | 35.0% | |
| ! | TACACGTTGTAATTTGAGGT+TGG | + | chr3_4:44294144-44294163 | Msa0502230:intron | 35.0% |
| ! | ACACGTTGTAATTTGAGGTT+GGG | + | chr3_4:44294145-44294164 | Msa0502230:intron | 35.0% |
| CTTAGAGATTCGAGTAAAGT+GGG | + | chr3_4:44294202-44294221 | Msa0502230:intron | 35.0% | |
| AGTGGGCAATTTCTATTACT+AGG | + | chr3_4:44294219-44294238 | Msa0502230:intron | 35.0% | |
| ! | GTTCTAACTCAGGTTTTCTA+TGG | - | chr3_4:44294348-44294367 | None:intergenic | 35.0% |
| ! | CTGATTCTAAGTTCTAACTC+AGG | - | chr3_4:44294358-44294377 | None:intergenic | 35.0% |
| ACATTAGTGATGTACATGAG+GGG | + | chr3_4:44294517-44294536 | Msa0502230:intron | 35.0% | |
| ACAGCCTCTTGTGTAAAAAT+AGG | + | chr3_4:44294606-44294625 | Msa0502230:intron | 35.0% | |
| CAGCCTCTTGTGTAAAAATA+GGG | + | chr3_4:44294607-44294626 | Msa0502230:intron | 35.0% | |
| GAGGCACATTCATAAATTAG+GGG | - | chr3_4:44294766-44294785 | None:intergenic | 35.0% | |
| ATCATGTGCAAACTTGAGTA+AGG | - | chr3_4:44294806-44294825 | None:intergenic | 35.0% | |
| !! | CAGTTTGTTTTTCAGCTTGA+TGG | + | chr3_4:44294848-44294867 | Msa0502230:intron | 35.0% |
| AAGATCAGCTTGTACTATAC+TGG | - | chr3_4:44294964-44294983 | None:intergenic | 35.0% | |
| !! | AACAACTTTACTTTTGGGAG+TGG | + | chr3_4:44295073-44295092 | Msa0502230:three_prime_UTR | 35.0% |
| !!! | CACTATGTTTTTAGGTCTTG+TGG | + | chr3_4:44295096-44295115 | Msa0502230:three_prime_UTR | 35.0% |
| TCTTTCTCTTTCTGTCTCTC+TGG | - | chr3_4:44289797-44289816 | None:intergenic | 40.0% | |
| GAGCTTCAATCTAAACTTGG+TGG | + | chr3_4:44290020-44290039 | Msa0502230:CDS | 40.0% | |
| ! | ATAAGTTGTTGTTGAGGTGG+TGG | - | chr3_4:44290164-44290183 | None:intergenic | 40.0% |
| !! | GGTTTTGATGAAGGGCAAAA+TGG | - | chr3_4:44290205-44290224 | None:intergenic | 40.0% |
| !! | GGGAATTAGGGTTTTGATGA+AGG | - | chr3_4:44290214-44290233 | None:intergenic | 40.0% |
| AGAACTAACAGGGACAGAAT+GGG | - | chr3_4:44290234-44290253 | None:intergenic | 40.0% | |
| AGTGTTAAGCCCTTACTTGA+TGG | - | chr3_4:44290514-44290533 | None:intergenic | 40.0% | |
| !!! | GGATTTTAACTCATGACCTC+TGG | + | chr3_4:44290551-44290570 | Msa0502230:intron | 40.0% |
| ATCTCTTCCAACTTAACCAG+AGG | - | chr3_4:44290570-44290589 | None:intergenic | 40.0% | |
| ! | GAGATCTCTTTAACGGCTTT+TGG | + | chr3_4:44290585-44290604 | Msa0502230:intron | 40.0% |
| AATGGGGAATGAGTCAAATG+AGG | + | chr3_4:44290643-44290662 | Msa0502230:intron | 40.0% | |
| ! | TCGTAGTTTGGGTTTAAAGC+TGG | + | chr3_4:44290933-44290952 | Msa0502230:intron | 40.0% |
| ! | CGTAGTTTGGGTTTAAAGCT+GGG | + | chr3_4:44290934-44290953 | Msa0502230:intron | 40.0% |
| TCAGATCTGTGTAATGATGC+TGG | + | chr3_4:44291004-44291023 | Msa0502230:intron | 40.0% | |
| CAGATCTGTGTAATGATGCT+GGG | + | chr3_4:44291005-44291024 | Msa0502230:intron | 40.0% | |
| GTAGTTGTTAGGGTGTAAAG+AGG | + | chr3_4:44291460-44291479 | Msa0502230:intron | 40.0% | |
| CTGAAAAAGCAGTCCATCTT+AGG | - | chr3_4:44291606-44291625 | None:intergenic | 40.0% | |
| AAATGATACGTGGATGCCAT+AGG | + | chr3_4:44291659-44291678 | Msa0502230:intron | 40.0% | |
| ATTTCCAGGATTCGAACCTA+TGG | - | chr3_4:44291678-44291697 | None:intergenic | 40.0% | |
| TCGTTCTCGTTCTACTTGTT+GGG | + | chr3_4:44291700-44291719 | Msa0502230:intron | 40.0% | |
| ! | ACACTTACTGGTTGGTTCAA+GGG | - | chr3_4:44292508-44292527 | None:intergenic | 40.0% |
| TTGAACCAACCAGTAAGTGT+CGG | + | chr3_4:44292508-44292527 | Msa0502230:intron | 40.0% | |
| CATTAAAGTCAACCAGCTAG+AGG | + | chr3_4:44292769-44292788 | Msa0502230:CDS | 40.0% | |
| AATGCTAGTGTGCATGAACT+TGG | - | chr3_4:44292821-44292840 | None:intergenic | 40.0% | |
| ACCAAGATGTTAAAGTGAGG+TGG | - | chr3_4:44292941-44292960 | None:intergenic | 40.0% | |
| GATAGGTGTTCAAGCTTCTA+TGG | + | chr3_4:44293218-44293237 | Msa0502230:intron | 40.0% | |
| CTATGGCAATGAACACTTGA+AGG | + | chr3_4:44293235-44293254 | Msa0502230:intron | 40.0% | |
| GCATCACACATTATTGCCAT+AGG | - | chr3_4:44293439-44293458 | None:intergenic | 40.0% | |
| AATGTGTGATGCAAAGCTTC+AGG | + | chr3_4:44293447-44293466 | Msa0502230:CDS | 40.0% | |
| !! | TGTGAAAGCATTTCAGCGTT+GGG | + | chr3_4:44293481-44293500 | Msa0502230:CDS | 40.0% |
| ! | TTGGGGATACCTGAAGTATT+GGG | + | chr3_4:44293499-44293518 | Msa0502230:CDS | 40.0% |
| CAGGCAAATATCTCAGTTCA+GGG | - | chr3_4:44294057-44294076 | None:intergenic | 40.0% | |
| GCTTAGAGATTCGAGTAAAG+TGG | + | chr3_4:44294201-44294220 | Msa0502230:intron | 40.0% | |
| !! | CGCTTTAAGAGTTGTAGCAA+AGG | - | chr3_4:44294292-44294311 | None:intergenic | 40.0% |
| TTGCTACAACTCTTAAAGCG+AGG | + | chr3_4:44294292-44294311 | Msa0502230:intron | 40.0% | |
| ! | ACTCAGGTTTTCTATGGTAC+AGG | - | chr3_4:44294342-44294361 | None:intergenic | 40.0% |
| CTTGTTGGAAAACATGACCT+GGG | + | chr3_4:44294422-44294441 | Msa0502230:intron | 40.0% | |
| ATGAACCGACCACTTGAAAA+AGG | + | chr3_4:44294474-44294493 | Msa0502230:intron | 40.0% | |
| TAAAGTTGTAGTCATGCGAC+TGG | + | chr3_4:44294558-44294577 | Msa0502230:intron | 40.0% | |
| GTTGCGTACAATACACCAAA+TGG | + | chr3_4:44294634-44294653 | Msa0502230:intron | 40.0% | |
| CGTACAATACACCAAATGGT+GGG | + | chr3_4:44294638-44294657 | Msa0502230:intron | 40.0% | |
| ! | GTCTTGTGGTTTGTCTAACT+TGG | + | chr3_4:44295110-44295129 | Msa0502230:three_prime_UTR | 40.0% |
| GTTTGTCTAACTTGGCACTT+AGG | + | chr3_4:44295118-44295137 | Msa0502230:three_prime_UTR | 40.0% | |
| CTTAGGTTAGAGTGACATGT+TGG | + | chr3_4:44295135-44295154 | Msa0502230:three_prime_UTR | 40.0% | |
| CAGGGACAGAATGGGAATTA+GGG | - | chr3_4:44290226-44290245 | None:intergenic | 45.0% | |
| ACAGGGACAGAATGGGAATT+AGG | - | chr3_4:44290227-44290246 | None:intergenic | 45.0% | |
| CAGAACTAACAGGGACAGAA+TGG | - | chr3_4:44290235-44290254 | None:intergenic | 45.0% | |
| CATTCTGTCCCTGTTAGTTC+TGG | + | chr3_4:44290233-44290252 | Msa0502230:CDS | 45.0% | |
| CACTGCTTCATTCTCAGAGT+TGG | + | chr3_4:44290530-44290549 | Msa0502230:intron | 45.0% | |
| CTCATGACCTCTGGTTAAGT+TGG | + | chr3_4:44290560-44290579 | Msa0502230:intron | 45.0% | |
| GCATGAATGAAAGAGGGGTT+TGG | + | chr3_4:44290672-44290691 | Msa0502230:intron | 45.0% | |
| CTTATCCCACTAAGTGCAGT+CGG | - | chr3_4:44290846-44290865 | None:intergenic | 45.0% | |
| GCACTTAGTGGGATAAGACT+TGG | + | chr3_4:44290849-44290868 | Msa0502230:intron | 45.0% | |
| !!! | TGCTGGGCTGTTTTAGTTGT+AGG | + | chr3_4:44291021-44291040 | Msa0502230:intron | 45.0% |
| GCGAATGCCTTATGCTAAGA+TGG | + | chr3_4:44291149-44291168 | Msa0502230:intron | 45.0% | |
| GAACGAGAACGACTATTTCC+AGG | - | chr3_4:44291692-44291711 | None:intergenic | 45.0% | |
| GTCGTTCTCGTTCTACTTGT+TGG | + | chr3_4:44291699-44291718 | Msa0502230:intron | 45.0% | |
| TGTGTCAGTGCTGTCAATCA+CGG | + | chr3_4:44291730-44291749 | Msa0502230:intron | 45.0% | |
| TGCATCTACCATTTCCAAGC+CGG | + | chr3_4:44291950-44291969 | Msa0502230:intron | 45.0% | |
| CTAAGCCAAAGAGAAGAGGT+GGG | + | chr3_4:44292142-44292161 | Msa0502230:CDS | 45.0% | |
| !! | CAAAGTTTGTTGAGACCTCC+TGG | - | chr3_4:44292168-44292187 | None:intergenic | 45.0% |
| GGAGGTCTCAACAAACTTTG+TGG | + | chr3_4:44292168-44292187 | Msa0502230:CDS | 45.0% | |
| CCAACAATGACCTGAAGTTC+AGG | - | chr3_4:44292201-44292220 | None:intergenic | 45.0% | |
| CCTGAACTTCAGGTCATTGT+TGG | + | chr3_4:44292198-44292217 | Msa0502230:CDS | 45.0% | |
| ATTGCACAAACCTCAGTCCT+TGG | - | chr3_4:44292237-44292256 | None:intergenic | 45.0% | |
| ! | GACACTTACTGGTTGGTTCA+AGG | - | chr3_4:44292509-44292528 | None:intergenic | 45.0% |
| TGAACCAACCAGTAAGTGTC+GGG | + | chr3_4:44292509-44292528 | Msa0502230:intron | 45.0% | |
| GAAACAGAAGGTAGAAGTGG+AGG | + | chr3_4:44292619-44292638 | Msa0502230:CDS | 45.0% | |
| ATTACAGAAGGAGTAGGAGC+AGG | - | chr3_4:44292665-44292684 | None:intergenic | 45.0% | |
| AAGGGAGATGTTACAGACAG+AGG | + | chr3_4:44292724-44292743 | Msa0502230:CDS | 45.0% | |
| !! | AGAGGTTCTGAGACGTATCT+GGG | + | chr3_4:44292742-44292761 | Msa0502230:CDS | 45.0% |
| ! | ATCTGTTGCTTACCTCTAGC+TGG | - | chr3_4:44292784-44292803 | None:intergenic | 45.0% |
| !! | GCACTGGTTAGCAAAACTAC+AGG | - | chr3_4:44292895-44292914 | None:intergenic | 45.0% |
| GCCACCTCACTTTAACATCT+TGG | + | chr3_4:44292937-44292956 | Msa0502230:intron | 45.0% | |
| GTAGGATCCTGTGAATCCTA+TGG | + | chr3_4:44293420-44293439 | Msa0502230:intron | 45.0% | |
| GCAAAGCTTCAGGAGATCTT+TGG | + | chr3_4:44293457-44293476 | Msa0502230:CDS | 45.0% | |
| !! | CTGTGAAAGCATTTCAGCGT+TGG | + | chr3_4:44293480-44293499 | Msa0502230:CDS | 45.0% |
| !! | GTGAAAGCATTTCAGCGTTG+GGG | + | chr3_4:44293482-44293501 | Msa0502230:CDS | 45.0% |
| GTTGGGGATACCTGAAGTAT+TGG | + | chr3_4:44293498-44293517 | Msa0502230:CDS | 45.0% | |
| ! | TGGGCCGTCATCACATTTTT+AGG | + | chr3_4:44293518-44293537 | Msa0502230:CDS | 45.0% |
| GGTCCGTTGAAACTTGAAAG+AGG | - | chr3_4:44293632-44293651 | None:intergenic | 45.0% | |
| GCAGGCAAATATCTCAGTTC+AGG | - | chr3_4:44294058-44294077 | None:intergenic | 45.0% | |
| TGAGATATTTGCCTGCTCCA+TGG | + | chr3_4:44294062-44294081 | Msa0502230:intron | 45.0% | |
| GAGATATTTGCCTGCTCCAT+GGG | + | chr3_4:44294063-44294082 | Msa0502230:intron | 45.0% | |
| AGATATTTGCCTGCTCCATG+GGG | + | chr3_4:44294064-44294083 | Msa0502230:intron | 45.0% | |
| ! | ACTGCATTGATGCATCCCTT+CGG | - | chr3_4:44294110-44294129 | None:intergenic | 45.0% |
| TGAGGTTGGGTCTTGAAGTT+TGG | + | chr3_4:44294158-44294177 | Msa0502230:intron | 45.0% | |
| ! | CCAGGTCATGTTTTCCAACA+AGG | - | chr3_4:44294424-44294443 | None:intergenic | 45.0% |
| CCTTGTTGGAAAACATGACC+TGG | + | chr3_4:44294421-44294440 | Msa0502230:intron | 45.0% | |
| !! | TGACCTGGGCGTTTTTAACT+AGG | + | chr3_4:44294436-44294455 | Msa0502230:intron | 45.0% |
| AAGCCTAGTTAAAAACGCCC+AGG | - | chr3_4:44294442-44294461 | None:intergenic | 45.0% | |
| ATGTACATGAGGGGTAACCT+TGG | + | chr3_4:44294526-44294545 | Msa0502230:intron | 45.0% | |
| ! | TTACACAAGAGGCTGTTTCC+AGG | - | chr3_4:44294602-44294621 | None:intergenic | 45.0% |
| GCGTACAATACACCAAATGG+TGG | + | chr3_4:44294637-44294656 | Msa0502230:intron | 45.0% | |
| CACTAATGTAAAGGGCAACC+CGG | - | chr3_4:44294704-44294723 | None:intergenic | 45.0% | |
| ! | GGGAGTGGCACTATGTTTTT+AGG | + | chr3_4:44295088-44295107 | Msa0502230:three_prime_UTR | 45.0% |
| GTGGAGGTTGTTGTAACTGC+TGG | - | chr3_4:44290145-44290164 | None:intergenic | 50.0% | |
| ! | AGTTGTTGTTGAGGTGGTGG+AGG | - | chr3_4:44290161-44290180 | None:intergenic | 50.0% |
| ! | TCTGCTGCTGTTGCTTCTGA+TGG | + | chr3_4:44290281-44290300 | Msa0502230:CDS | 50.0% |
| TTCTGCCAATGTGCTTCCCA+AGG | + | chr3_4:44290328-44290347 | Msa0502230:CDS | 50.0% | |
| ! | CCTTTCCTTGGGAAGCACAT+TGG | - | chr3_4:44290336-44290355 | None:intergenic | 50.0% |
| CCAATGTGCTTCCCAAGGAA+AGG | + | chr3_4:44290333-44290352 | Msa0502230:CDS | 50.0% | |
| ACTAAGTGCAGTCGGCTACA+TGG | - | chr3_4:44290838-44290857 | None:intergenic | 50.0% | |
| ATGTAGCCGACTGCACTTAG+TGG | + | chr3_4:44290837-44290856 | Msa0502230:intron | 50.0% | |
| TGTAGCCGACTGCACTTAGT+GGG | + | chr3_4:44290838-44290857 | Msa0502230:intron | 50.0% | |
| GATGCCATAGGTTCGAATCC+TGG | + | chr3_4:44291671-44291690 | Msa0502230:intron | 50.0% | |
| GTGTCAGTGCTGTCAATCAC+GGG | + | chr3_4:44291731-44291750 | Msa0502230:intron | 50.0% | |
| ATTTCCAAGCCGGACCTGAT+GGG | + | chr3_4:44291960-44291979 | Msa0502230:intron | 50.0% | |
| CAGCCTAAGCCAAAGAGAAG+AGG | + | chr3_4:44292138-44292157 | Msa0502230:CDS | 50.0% | |
| ! | CCACCTCTTCTCTTTGGCTT+AGG | - | chr3_4:44292144-44292163 | None:intergenic | 50.0% |
| CCTAAGCCAAAGAGAAGAGG+TGG | + | chr3_4:44292141-44292160 | Msa0502230:CDS | 50.0% | |
| TGGTGTTTCGCCTGAACTTC+AGG | + | chr3_4:44292188-44292207 | Msa0502230:CDS | 50.0% | |
| TTGCAACGATGAACTGCGTG+TGG | + | chr3_4:44292419-44292438 | Msa0502230:CDS | 50.0% | |
| ACTGCGTGTGGTGTTTGAGA+CGG | + | chr3_4:44292431-44292450 | Msa0502230:CDS | 50.0% | |
| ! | GAACCAACCAGTAAGTGTCG+GGG | + | chr3_4:44292510-44292529 | Msa0502230:intron | 50.0% |
| TAACCCCGACACTTACTGGT+TGG | - | chr3_4:44292516-44292535 | None:intergenic | 50.0% | |
| !! | ACCAGTAAGTGTCGGGGTTA+TGG | + | chr3_4:44292516-44292535 | Msa0502230:intron | 50.0% |
| ACCATAACCCCGACACTTAC+TGG | - | chr3_4:44292520-44292539 | None:intergenic | 50.0% | |
| !! | ACCTTCTGTTTCTTTGGGGC+AGG | - | chr3_4:44292611-44292630 | None:intergenic | 50.0% |
| ACAGAAGGTAGAAGTGGAGG+TGG | + | chr3_4:44292622-44292641 | Msa0502230:CDS | 50.0% | |
| CAGAAGGTAGAAGTGGAGGT+GGG | + | chr3_4:44292623-44292642 | Msa0502230:CDS | 50.0% | |
| !!! | GCTAACTTTTTCGGCGCTAC+TGG | + | chr3_4:44292701-44292720 | Msa0502230:CDS | 50.0% |
| !!! | ACTTTTTCGGCGCTACTGGA+AGG | + | chr3_4:44292705-44292724 | Msa0502230:CDS | 50.0% |
| !!! | CTTTTTCGGCGCTACTGGAA+GGG | + | chr3_4:44292706-44292725 | Msa0502230:CDS | 50.0% |
| !! | CAGAGGTTCTGAGACGTATC+TGG | + | chr3_4:44292741-44292760 | Msa0502230:CDS | 50.0% |
| !! | TGATGACGGCCCAATACTTC+AGG | - | chr3_4:44293511-44293530 | None:intergenic | 50.0% |
| GAAGGGATGCATCAATGCAG+TGG | + | chr3_4:44294109-44294128 | Msa0502230:intron | 50.0% | |
| CAACTTTACCAGTTGCGCCA+AGG | - | chr3_4:44294546-44294565 | None:intergenic | 50.0% | |
| GTTGTAGTCATGCGACTGGA+AGG | + | chr3_4:44294562-44294581 | Msa0502230:intron | 50.0% | |
| ! | ATGCGGGAGCTTTAGTGAAC+CGG | + | chr3_4:44294682-44294701 | Msa0502230:intron | 50.0% |
| TCAGTGCTGTCAATCACGGG+CGG | + | chr3_4:44291734-44291753 | Msa0502230:intron | 55.0% | |
| TGTCAATCACGGGCGGATAG+TGG | + | chr3_4:44291741-44291760 | Msa0502230:intron | 55.0% | |
| TGATACCGCGTTGCTGTAGC+CGG | + | chr3_4:44291897-44291916 | Msa0502230:intron | 55.0% | |
| !! | CATCAGGTCCGGCTTGGAAA+TGG | - | chr3_4:44291961-44291980 | None:intergenic | 55.0% |
| CATTTCCAAGCCGGACCTGA+TGG | + | chr3_4:44291959-44291978 | Msa0502230:intron | 55.0% | |
| TGCCAAACTCCCATCAGGTC+CGG | - | chr3_4:44291972-44291991 | None:intergenic | 55.0% | |
| CAGACTGCCAAACTCCCATC+AGG | - | chr3_4:44291977-44291996 | None:intergenic | 55.0% | |
| ACCTCAGTCCTTGGCATTGC+TGG | - | chr3_4:44292228-44292247 | None:intergenic | 55.0% | |
| GCCTGCCCCAAAGAAACAGA+AGG | + | chr3_4:44292607-44292626 | Msa0502230:CDS | 55.0% | |
| TGCCTGCTCCATGGGGTTAT+TGG | + | chr3_4:44294071-44294090 | Msa0502230:intron | 55.0% | |
| TGCCAATAACCCCATGGAGC+AGG | - | chr3_4:44294076-44294095 | None:intergenic | 55.0% | |
| GTGCACTGCCAATAACCCCA+TGG | - | chr3_4:44294082-44294101 | None:intergenic | 55.0% | |
| ! | TTGATGCATCCCTTCGGTGC+TGG | - | chr3_4:44294104-44294123 | None:intergenic | 55.0% |
| GTCATGCGACTGGAAGGTCA+CGG | + | chr3_4:44294568-44294587 | Msa0502230:intron | 55.0% | |
| TCATGCGACTGGAAGGTCAC+GGG | + | chr3_4:44294569-44294588 | Msa0502230:intron | 55.0% | |
| AAGGTCACGGGTTCAAGTCC+TGG | + | chr3_4:44294581-44294600 | Msa0502230:intron | 55.0% | |
| CTAAAGCTCCCGCATACGCA+GGG | - | chr3_4:44294677-44294696 | None:intergenic | 55.0% | |
| ACTAAAGCTCCCGCATACGC+AGG | - | chr3_4:44294678-44294697 | None:intergenic | 55.0% | |
| ! | TGCGGGAGCTTTAGTGAACC+GGG | + | chr3_4:44294683-44294702 | Msa0502230:intron | 55.0% |
| AACTCCCATCAGGTCCGGCT+TGG | - | chr3_4:44291967-44291986 | None:intergenic | 60.0% | |
| AGCCGGACCTGATGGGAGTT+TGG | + | chr3_4:44291967-44291986 | Msa0502230:intron | 60.0% | |
| CCTGGCCCACCTCTTCTCTT+TGG | - | chr3_4:44292150-44292169 | None:intergenic | 60.0% | |
| CCAAAGAGAAGAGGTGGGCC+AGG | + | chr3_4:44292147-44292166 | Msa0502230:CDS | 60.0% | |
| AAGAGAAGAGGTGGGCCAGG+AGG | + | chr3_4:44292150-44292169 | Msa0502230:CDS | 60.0% | |
| TTGGCCAGCCAGCAATGCCA+AGG | + | chr3_4:44292217-44292236 | Msa0502230:CDS | 60.0% | |
| CAGTCCTTGGCATTGCTGGC+TGG | - | chr3_4:44292224-44292243 | None:intergenic | 60.0% | |
| GCCAGCAATGCCAAGGACTG+AGG | + | chr3_4:44292224-44292243 | Msa0502230:CDS | 60.0% | |
| AGGGGTAACCTTGGCGCAAC+TGG | + | chr3_4:44294535-44294554 | Msa0502230:intron | 60.0% | |
| ! | CAAATGGTGGGACCCCTTCC+CGG | + | chr3_4:44294650-44294669 | Msa0502230:intron | 60.0% |
| GCTAGCCGGCTACAGCAACG+CGG | - | chr3_4:44291905-44291924 | None:intergenic | 65.0% | |
| ! | TGGCAGTGCACCAGCACCGA+AGG | + | chr3_4:44294091-44294110 | Msa0502230:intron | 65.0% |
| ! | GGCAGTGCACCAGCACCGAA+GGG | + | chr3_4:44294092-44294111 | Msa0502230:intron | 65.0% |
| CGGGAAGGGGTCCCACCATT+TGG | - | chr3_4:44294652-44294671 | None:intergenic | 65.0% | |
| CATACGCAGGGTCCGGGAAG+GGG | - | chr3_4:44294665-44294684 | None:intergenic | 65.0% | |
| GCATACGCAGGGTCCGGGAA+GGG | - | chr3_4:44294666-44294685 | None:intergenic | 65.0% | |
| CTTCCCGGACCCTGCGTATG+CGG | + | chr3_4:44294665-44294684 | Msa0502230:intron | 65.0% | |
| TTCCCGGACCCTGCGTATGC+GGG | + | chr3_4:44294666-44294685 | Msa0502230:intron | 65.0% | |
| CGCATACGCAGGGTCCGGGA+AGG | - | chr3_4:44294667-44294686 | None:intergenic | 70.0% | |
| CTCCCGCATACGCAGGGTCC+GGG | - | chr3_4:44294671-44294690 | None:intergenic | 70.0% | |
| GCTCCCGCATACGCAGGGTC+CGG | - | chr3_4:44294672-44294691 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 44289765 | 44295261 | 44289765 | ID=Msa0502230;Name=Msa0502230 |
| chr3_4 | mRNA | 44289765 | 44295261 | 44289765 | ID=Msa0502230-mRNA-1;Parent=Msa0502230;Name=Msa0502230-mRNA-1;_AED=0.16;_eAED=0.16;_QI=150|1|1|1|0.8|0.83|6|342|345 |
| chr3_4 | exon | 44289765 | 44290354 | 44289765 | ID=Msa0502230-mRNA-1:exon:9463;Parent=Msa0502230-mRNA-1 |
| chr3_4 | exon | 44292134 | 44292245 | 44292134 | ID=Msa0502230-mRNA-1:exon:9464;Parent=Msa0502230-mRNA-1 |
| chr3_4 | exon | 44292348 | 44292519 | 44292348 | ID=Msa0502230-mRNA-1:exon:9465;Parent=Msa0502230-mRNA-1 |
| chr3_4 | exon | 44292603 | 44292790 | 44292603 | ID=Msa0502230-mRNA-1:exon:9466;Parent=Msa0502230-mRNA-1 |
| chr3_4 | exon | 44293424 | 44293567 | 44293424 | ID=Msa0502230-mRNA-1:exon:9467;Parent=Msa0502230-mRNA-1 |
| chr3_4 | exon | 44294938 | 44295261 | 44294938 | ID=Msa0502230-mRNA-1:exon:9468;Parent=Msa0502230-mRNA-1 |
| chr3_4 | five_prime_UTR | 44289765 | 44289914 | 44289765 | ID=Msa0502230-mRNA-1:five_prime_utr;Parent=Msa0502230-mRNA-1 |
| chr3_4 | CDS | 44289915 | 44290354 | 44289915 | ID=Msa0502230-mRNA-1:cds;Parent=Msa0502230-mRNA-1 |
| chr3_4 | CDS | 44292134 | 44292245 | 44292134 | ID=Msa0502230-mRNA-1:cds;Parent=Msa0502230-mRNA-1 |
| chr3_4 | CDS | 44292348 | 44292519 | 44292348 | ID=Msa0502230-mRNA-1:cds;Parent=Msa0502230-mRNA-1 |
| chr3_4 | CDS | 44292603 | 44292790 | 44292603 | ID=Msa0502230-mRNA-1:cds;Parent=Msa0502230-mRNA-1 |
| chr3_4 | CDS | 44293424 | 44293549 | 44293424 | ID=Msa0502230-mRNA-1:cds;Parent=Msa0502230-mRNA-1 |
| chr3_4 | three_prime_UTR | 44293550 | 44293567 | 44293550 | ID=Msa0502230-mRNA-1:three_prime_utr;Parent=Msa0502230-mRNA-1 |
| chr3_4 | three_prime_UTR | 44294938 | 44295261 | 44294938 | ID=Msa0502230-mRNA-1:three_prime_utr;Parent=Msa0502230-mRNA-1 |
| Gene Sequence |
| Protein sequence |
