AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1010350


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1010350 MtrunA17_Chr7g0221371 96.970 231 7 0 1 231 1 231 4.82e-169 464
Msa1010350 MtrunA17_Chr4g0020161 94.220 173 10 0 59 231 1 173 5.25e-122 343
Msa1010350 MtrunA17_Chr7g0270171 73.057 193 47 2 44 231 1 193 6.67e-102 293
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1010350 AT5G23710.1 37.209 215 128 3 21 231 19 230 2.57e-47 156

Find 52 sgRNAs with CRISPR-Local

Find 275 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGATGACAAGTACTGGATA+TGG 0.326445 7_1:+13315301 Msa1010350:CDS
CGGCGAAGTGTGACTCCAAA+TGG 0.352806 7_1:-13313535 None:intergenic
ATGAAACGTTTGCAAGAATC+TGG 0.362818 7_1:+13314809 Msa1010350:CDS
GATGTTTGGAGTGGGTTAAA+AGG 0.362955 7_1:+13315197 Msa1010350:CDS
AAGCAGTGTATATAACAAAT+AGG 0.375937 7_1:-13313481 Msa1010340:intron
GGCACTTATAAACAAGAGTA+TGG 0.381632 7_1:+13314988 Msa1010350:CDS
GAGCCTTCCAAGGATATAAC+TGG 0.383383 7_1:+13315070 Msa1010350:CDS
TGAAAATAGACACATGTTGT+TGG 0.391859 7_1:-13315463 None:intergenic
TTCCACATGTGATGGATGTT+TGG 0.402495 7_1:+13315183 Msa1010350:CDS
GTGCTTGCAATGCATTTCAT+TGG 0.426796 7_1:+13315153 Msa1010350:CDS
GAAATGGTTGGATTTCTGAA+TGG 0.445730 7_1:+13315486 Msa1010350:exon
TAGAGTATACGCTCTTCATC+TGG 0.446970 7_1:-13314869 None:intergenic
TGTTTATTAAGCGCAGCAAT+AGG 0.447212 7_1:-13314959 None:intergenic
ATGCCCACCAGTTATATCCT+TGG 0.459091 7_1:-13315077 None:intergenic
ATGCGGGAGCTTCAGTGCAC+CGG 0.461180 7_1:-13315548 None:intergenic
ACTGAAGCTCCCGCATATGC+AGG 0.462732 7_1:+13315555 Msa1010350:three_prime_UTR
GCTCCCGCATATGCAGGGTC+CGG 0.466464 7_1:+13315561 Msa1010350:three_prime_UTR
TTCCCGGACCCTGCATATGC+GGG 0.471788 7_1:-13315564 None:intergenic
TGGAGTGGGTTAAAAGGAGT+GGG 0.480413 7_1:+13315203 Msa1010350:CDS
CTTCCCGGACCCTGCATATG+CGG 0.484509 7_1:-13315565 None:intergenic
AGATGACAAGTACTGGATAT+GGG 0.485810 7_1:+13315302 Msa1010350:CDS
CTCCCGCATATGCAGGGTCC+GGG 0.491023 7_1:+13315562 Msa1010350:three_prime_UTR
AAATGGTTGGATTTCTGAAT+GGG 0.494317 7_1:+13315487 Msa1010350:exon
CAAAGGTATAAAGATCTACA+TGG 0.502338 7_1:+13315036 Msa1010350:CDS
ATAATGCAGATGACAAGTAC+TGG 0.506988 7_1:+13315295 Msa1010350:CDS
GGCGAAGTGTGACTCCAAAT+GGG 0.521369 7_1:-13313534 None:intergenic
ATACTTAGCAAGGAAAACTC+AGG 0.536886 7_1:+13314899 Msa1010350:CDS
AGCGACCACCGATTCTCGCC+GGG 0.543848 7_1:-13313572 None:intergenic
TATAAACAAGAGTATGGTAA+AGG 0.546896 7_1:+13314994 Msa1010350:CDS
CATTTGGAGTCACACTTCGC+CGG 0.552787 7_1:+13313536 Msa1010350:five_prime_UTR
TTGGAGTGGGTTAAAAGGAG+TGG 0.562912 7_1:+13315202 Msa1010350:CDS
TGCGGGAGCTTCAGTGCACC+GGG 0.565941 7_1:-13315547 None:intergenic
AACAGAATTTGAGCCTTCCA+AGG 0.568058 7_1:+13315060 Msa1010350:CDS
TATTAAGCGCAGCAATAGGA+AGG 0.568531 7_1:-13314955 None:intergenic
GAGAGAGTTTCCACATGTGA+TGG 0.576485 7_1:+13315175 Msa1010350:CDS
TTGTTACATATGCAAAAGCA+AGG 0.588438 7_1:+13315354 Msa1010350:CDS
GTCATCACAACTCAAGTCAC+GGG 0.589333 7_1:+13315226 Msa1010350:CDS
CTGAAGCTCCCGCATATGCA+GGG 0.595138 7_1:+13315556 Msa1010350:three_prime_UTR
TGCGCTTAATAAACACATGA+AGG 0.598707 7_1:+13314967 Msa1010350:CDS
CTATGACCTTATACTTAGCA+AGG 0.601401 7_1:+13314889 Msa1010350:CDS
CCACCAGTTATATCCTTGGA+AGG 0.602371 7_1:-13315073 None:intergenic
GGTCATCACAACTCAAGTCA+CGG 0.608686 7_1:+13315225 Msa1010350:CDS
CCTTCCAAGGATATAACTGG+TGG 0.618508 7_1:+13315073 Msa1010350:CDS
CTCCAAACATCCATCACATG+TGG 0.618959 7_1:-13315185 None:intergenic
TACTTAGCAAGGAAAACTCA+GGG 0.624253 7_1:+13314900 Msa1010350:CDS
GATGACAAGTACTGGATATG+GGG 0.631855 7_1:+13315303 Msa1010350:CDS
GGAGTGGGTTAAAAGGAGTG+GGG 0.639610 7_1:+13315204 Msa1010350:CDS
CATGTGATGGATGTTTGGAG+TGG 0.639686 7_1:+13315188 Msa1010350:CDS
ATGTGATGGATGTTTGGAGT+GGG 0.644389 7_1:+13315189 Msa1010350:CDS
TGTTACATATGCAAAAGCAA+GGG 0.651007 7_1:+13315355 Msa1010350:CDS
AAAGGTATAAAGATCTACAT+GGG 0.652631 7_1:+13315037 Msa1010350:CDS
CTTCCAAGGATATAACTGGT+GGG 0.673279 7_1:+13315074 Msa1010350:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATATATATATATATAAAA+AGG + chr7_1:13315520-13315539 Msa1010350:three_prime_UTR 0.0%
!! TATATATATATATATAAAAA+GGG + chr7_1:13315521-13315540 Msa1010350:three_prime_UTR 0.0%
!! TTATATATATATATATAAAA+AGG + chr7_1:13315520-13315539 Msa1010350:three_prime_UTR 0.0%
!! TATATATATATATATAAAAA+GGG + chr7_1:13315521-13315540 Msa1010350:three_prime_UTR 0.0%
!!! ATTTTTTTTTTTTTGCATTT+TGG + chr7_1:13313937-13313956 Msa1010350:intron 10.0%
!!! AGCAATATATTAAATATTTT+TGG + chr7_1:13314294-13314313 Msa1010350:intron 10.0%
!! AAGATATAAAATATACAAAA+GGG - chr7_1:13314330-13314349 None:intergenic 10.0%
!! TAAGATATAAAATATACAAA+AGG - chr7_1:13314331-13314350 None:intergenic 10.0%
!! AATTAATTATATCATTCAAA+TGG - chr7_1:13314756-13314775 None:intergenic 10.0%
!!! ATTTTTTTTTTTTTGCATTT+TGG + chr7_1:13313937-13313956 Msa1010350:intron 10.0%
!!! AGCAATATATTAAATATTTT+TGG + chr7_1:13314294-13314313 Msa1010350:intron 10.0%
!! AAGATATAAAATATACAAAA+GGG - chr7_1:13314330-13314349 None:intergenic 10.0%
!! TAAGATATAAAATATACAAA+AGG - chr7_1:13314331-13314350 None:intergenic 10.0%
!! AATTAATTATATCATTCAAA+TGG - chr7_1:13314756-13314775 None:intergenic 10.0%
!!! TAATTTATAACTTCATTTTC+AGG + chr7_1:13314674-13314693 Msa1010350:intron 15.0%
!!! TAATTTATAACTTCATTTTC+AGG + chr7_1:13314674-13314693 Msa1010350:intron 15.0%
!! TTAGAAAATTGTTTATGCTA+TGG + chr7_1:13313773-13313792 Msa1010350:intron 20.0%
!! CAGATCTAAACATTATATAT+TGG - chr7_1:13313985-13314004 None:intergenic 20.0%
!!! TCATATCATATAGATTTTCA+TGG - chr7_1:13314156-13314175 None:intergenic 20.0%
!! AAATATATAACAAAAGCAGA+TGG - chr7_1:13314198-13314217 None:intergenic 20.0%
!!! GTTATATATTTTGTGATACT+TGG + chr7_1:13314207-13314226 Msa1010350:intron 20.0%
!!! CTTTATACCTTTGTTTTTAA+TGG - chr7_1:13315029-13315048 None:intergenic 20.0%
!! TTAGAAAATTGTTTATGCTA+TGG + chr7_1:13313773-13313792 Msa1010350:intron 20.0%
!! CAGATCTAAACATTATATAT+TGG - chr7_1:13313985-13314004 None:intergenic 20.0%
!!! TCATATCATATAGATTTTCA+TGG - chr7_1:13314156-13314175 None:intergenic 20.0%
!! AAATATATAACAAAAGCAGA+TGG - chr7_1:13314198-13314217 None:intergenic 20.0%
!!! GTTATATATTTTGTGATACT+TGG + chr7_1:13314207-13314226 Msa1010350:intron 20.0%
!!! CTTTATACCTTTGTTTTTAA+TGG - chr7_1:13315029-13315048 None:intergenic 20.0%
! AAGCAGTGTATATAACAAAT+AGG - chr7_1:13313484-13313503 Msa1010340:intron 25.0%
!! GTACTGTTGTTTATAGTTTA+TGG + chr7_1:13313795-13313814 Msa1010350:intron 25.0%
! CTAAACATTATATATTGGTG+TGG - chr7_1:13313980-13313999 None:intergenic 25.0%
!!! ATATGCACATTTTAAGTGAA+TGG + chr7_1:13314058-13314077 Msa1010350:intron 25.0%
!!! TATGCACATTTTAAGTGAAT+GGG + chr7_1:13314059-13314078 Msa1010350:intron 25.0%
!!! CTTTTGGTGTTTTTATTCAA+AGG + chr7_1:13314436-13314455 Msa1010350:intron 25.0%
!!! TGTTTTTATTCAAAGGTTTC+TGG + chr7_1:13314443-13314462 Msa1010350:intron 25.0%
! GAACATGGAAAAAACAAAAT+AGG - chr7_1:13314597-13314616 None:intergenic 25.0%
!! TTTGACATTTTTCTCTTGTA+AGG + chr7_1:13314785-13314804 Msa1010350:intron 25.0%
!! TATAAACAAGAGTATGGTAA+AGG + chr7_1:13314994-13315013 Msa1010350:CDS 25.0%
!!! ATACCTTTGTTTTTAATGGA+AGG - chr7_1:13315025-13315044 None:intergenic 25.0%
!! AAAGGTATAAAGATCTACAT+GGG + chr7_1:13315037-13315056 Msa1010350:CDS 25.0%
! AAGCAGTGTATATAACAAAT+AGG - chr7_1:13313484-13313503 Msa1010340:intron 25.0%
!! GTACTGTTGTTTATAGTTTA+TGG + chr7_1:13313795-13313814 Msa1010350:intron 25.0%
! CTAAACATTATATATTGGTG+TGG - chr7_1:13313980-13313999 None:intergenic 25.0%
!!! ATATGCACATTTTAAGTGAA+TGG + chr7_1:13314058-13314077 Msa1010350:intron 25.0%
!!! TATGCACATTTTAAGTGAAT+GGG + chr7_1:13314059-13314078 Msa1010350:intron 25.0%
!!! CTTTTGGTGTTTTTATTCAA+AGG + chr7_1:13314436-13314455 Msa1010350:intron 25.0%
!!! TGTTTTTATTCAAAGGTTTC+TGG + chr7_1:13314443-13314462 Msa1010350:intron 25.0%
! GAACATGGAAAAAACAAAAT+AGG - chr7_1:13314597-13314616 None:intergenic 25.0%
!! TTTGACATTTTTCTCTTGTA+AGG + chr7_1:13314785-13314804 Msa1010350:intron 25.0%
!! TATAAACAAGAGTATGGTAA+AGG + chr7_1:13314994-13315013 Msa1010350:CDS 25.0%
!!! ATACCTTTGTTTTTAATGGA+AGG - chr7_1:13315025-13315044 None:intergenic 25.0%
!! AAAGGTATAAAGATCTACAT+GGG + chr7_1:13315037-13315056 Msa1010350:CDS 25.0%
!! TTTAGCTTGAACAAAGAGAA+AGG - chr7_1:13313617-13313636 None:intergenic 30.0%
! TTTCTTTGGTTTCTTTGTGA+TGG + chr7_1:13313914-13313933 Msa1010350:intron 30.0%
TGTATTAACTTTGACAAAGC+TGG + chr7_1:13314091-13314110 Msa1010350:intron 30.0%
!! AGTCATTTTCTTTTCCTAAG+AGG - chr7_1:13314121-13314140 None:intergenic 30.0%
! ATCATATAGATTTTCATGGC+AGG - chr7_1:13314152-13314171 None:intergenic 30.0%
CACATTCAAGATAAAGAAAG+TGG + chr7_1:13314270-13314289 Msa1010350:intron 30.0%
!! TGCTATTTCATCATGATTCA+TGG + chr7_1:13314413-13314432 Msa1010350:intron 30.0%
!! TCTGCTACTTGTTATTTGTT+TGG + chr7_1:13314493-13314512 Msa1010350:intron 30.0%
! AGTTTTCCTTGCTAAGTATA+AGG - chr7_1:13314898-13314917 None:intergenic 30.0%
CTTCCTTCCATTAAAAACAA+AGG + chr7_1:13315019-13315038 Msa1010350:CDS 30.0%
! CAAAGGTATAAAGATCTACA+TGG + chr7_1:13315036-13315055 Msa1010350:CDS 30.0%
! AGAAGAGATTTTGCAAACTT+TGG + chr7_1:13315258-13315277 Msa1010350:CDS 30.0%
TTGTTACATATGCAAAAGCA+AGG + chr7_1:13315354-13315373 Msa1010350:CDS 30.0%
TGTTACATATGCAAAAGCAA+GGG + chr7_1:13315355-13315374 Msa1010350:CDS 30.0%
TGACAAGAAAAACATGGAAA+GGG - chr7_1:13315406-13315425 None:intergenic 30.0%
TTGACAAGAAAAACATGGAA+AGG - chr7_1:13315407-13315426 None:intergenic 30.0%
! TTCCATGTTTTTCTTGTCAA+CGG + chr7_1:13315407-13315426 Msa1010350:CDS 30.0%
TGAAAATAGACACATGTTGT+TGG - chr7_1:13315466-13315485 None:intergenic 30.0%
! CATGTGTCTATTTTCAGAAA+TGG + chr7_1:13315470-13315489 Msa1010350:CDS 30.0%
! TGTCTATTTTCAGAAATGGT+TGG + chr7_1:13315474-13315493 Msa1010350:CDS 30.0%
AAATGGTTGGATTTCTGAAT+GGG + chr7_1:13315487-13315506 Msa1010350:exon 30.0%
TATATATAAAAAGGGCAACC+CGG + chr7_1:13315529-13315548 Msa1010350:three_prime_UTR 30.0%
!! TTTAGCTTGAACAAAGAGAA+AGG - chr7_1:13313617-13313636 None:intergenic 30.0%
! TTTCTTTGGTTTCTTTGTGA+TGG + chr7_1:13313914-13313933 Msa1010350:intron 30.0%
TGTATTAACTTTGACAAAGC+TGG + chr7_1:13314091-13314110 Msa1010350:intron 30.0%
!! AGTCATTTTCTTTTCCTAAG+AGG - chr7_1:13314121-13314140 None:intergenic 30.0%
! ATCATATAGATTTTCATGGC+AGG - chr7_1:13314152-13314171 None:intergenic 30.0%
CACATTCAAGATAAAGAAAG+TGG + chr7_1:13314270-13314289 Msa1010350:intron 30.0%
!! TGCTATTTCATCATGATTCA+TGG + chr7_1:13314413-13314432 Msa1010350:intron 30.0%
!! TCTGCTACTTGTTATTTGTT+TGG + chr7_1:13314493-13314512 Msa1010350:intron 30.0%
! AGTTTTCCTTGCTAAGTATA+AGG - chr7_1:13314898-13314917 None:intergenic 30.0%
CTTCCTTCCATTAAAAACAA+AGG + chr7_1:13315019-13315038 Msa1010350:CDS 30.0%
! CAAAGGTATAAAGATCTACA+TGG + chr7_1:13315036-13315055 Msa1010350:CDS 30.0%
! AGAAGAGATTTTGCAAACTT+TGG + chr7_1:13315258-13315277 Msa1010350:CDS 30.0%
TTGTTACATATGCAAAAGCA+AGG + chr7_1:13315354-13315373 Msa1010350:CDS 30.0%
TGTTACATATGCAAAAGCAA+GGG + chr7_1:13315355-13315374 Msa1010350:CDS 30.0%
TGACAAGAAAAACATGGAAA+GGG - chr7_1:13315406-13315425 None:intergenic 30.0%
TTGACAAGAAAAACATGGAA+AGG - chr7_1:13315407-13315426 None:intergenic 30.0%
! TTCCATGTTTTTCTTGTCAA+CGG + chr7_1:13315407-13315426 Msa1010350:CDS 30.0%
TGAAAATAGACACATGTTGT+TGG - chr7_1:13315466-13315485 None:intergenic 30.0%
! CATGTGTCTATTTTCAGAAA+TGG + chr7_1:13315470-13315489 Msa1010350:CDS 30.0%
! TGTCTATTTTCAGAAATGGT+TGG + chr7_1:13315474-13315493 Msa1010350:CDS 30.0%
AAATGGTTGGATTTCTGAAT+GGG + chr7_1:13315487-13315506 Msa1010350:exon 30.0%
TATATATAAAAAGGGCAACC+CGG + chr7_1:13315529-13315548 Msa1010350:three_prime_UTR 30.0%
!!! ATGGGTTTTTGAGACAACAA+GGG - chr7_1:13313519-13313538 Msa1010340:intron 35.0%
!!! AATGGGTTTTTGAGACAACA+AGG - chr7_1:13313520-13313539 None:intergenic 35.0%
TGTTGTCTCAAAAACCCATT+TGG + chr7_1:13313520-13313539 Msa1010350:five_prime_UTR 35.0%
AGAAACCAAAGAAACACCAT+AGG - chr7_1:13313908-13313927 None:intergenic 35.0%
ATAATGTTTAGATCTGTCCC+TGG + chr7_1:13313989-13314008 Msa1010350:intron 35.0%
AATTGATCAATGCCTTACCA+GGG - chr7_1:13314009-13314028 None:intergenic 35.0%
AAATTGATCAATGCCTTACC+AGG - chr7_1:13314010-13314029 None:intergenic 35.0%
! ATAGATTTTCATGGCAGGTT+AGG - chr7_1:13314147-13314166 None:intergenic 35.0%
TTGTGATACTTGGAATGCAT+TGG + chr7_1:13314217-13314236 Msa1010350:intron 35.0%
! TCATCATGATTCATGGCTTT+TGG + chr7_1:13314420-13314439 Msa1010350:intron 35.0%
CCATGTTCCAAAATTTGAGA+CGG + chr7_1:13314609-13314628 Msa1010350:intron 35.0%
! TTCCAAAATTTGAGACGGAA+AGG + chr7_1:13314614-13314633 Msa1010350:intron 35.0%
! TCCAAAATTTGAGACGGAAA+GGG + chr7_1:13314615-13314634 Msa1010350:intron 35.0%
ATGAAACGTTTGCAAGAATC+TGG + chr7_1:13314809-13314828 Msa1010350:CDS 35.0%
!! TTTTTGTCGTTTCTGTTGAG+AGG - chr7_1:13314837-13314856 None:intergenic 35.0%
ACAGAAACGACAAAAACTGT+CGG + chr7_1:13314841-13314860 Msa1010350:CDS 35.0%
CTATGACCTTATACTTAGCA+AGG + chr7_1:13314889-13314908 Msa1010350:CDS 35.0%
ATACTTAGCAAGGAAAACTC+AGG + chr7_1:13314899-13314918 Msa1010350:CDS 35.0%
TACTTAGCAAGGAAAACTCA+GGG + chr7_1:13314900-13314919 Msa1010350:CDS 35.0%
TGTTTATTAAGCGCAGCAAT+AGG - chr7_1:13314962-13314981 None:intergenic 35.0%
TGCGCTTAATAAACACATGA+AGG + chr7_1:13314967-13314986 Msa1010350:CDS 35.0%
GGCACTTATAAACAAGAGTA+TGG + chr7_1:13314988-13315007 Msa1010350:CDS 35.0%
ATAATGCAGATGACAAGTAC+TGG + chr7_1:13315295-13315314 Msa1010350:CDS 35.0%
!! AGATGACAAGTACTGGATAT+GGG + chr7_1:13315302-13315321 Msa1010350:CDS 35.0%
! GATTTTGCATCTATTCCTGT+TGG + chr7_1:13315325-13315344 Msa1010350:CDS 35.0%
! ATGTAACAAGTTTTGCCAAC+AGG - chr7_1:13315343-13315362 None:intergenic 35.0%
ATCCGTTGACAAGAAAAACA+TGG - chr7_1:13315412-13315431 None:intergenic 35.0%
GAAATGGTTGGATTTCTGAA+TGG + chr7_1:13315486-13315505 Msa1010350:exon 35.0%
!!! ATGGGTTTTTGAGACAACAA+GGG - chr7_1:13313519-13313538 Msa1010340:intron 35.0%
!!! AATGGGTTTTTGAGACAACA+AGG - chr7_1:13313520-13313539 None:intergenic 35.0%
TGTTGTCTCAAAAACCCATT+TGG + chr7_1:13313520-13313539 Msa1010350:five_prime_UTR 35.0%
AGAAACCAAAGAAACACCAT+AGG - chr7_1:13313908-13313927 None:intergenic 35.0%
ATAATGTTTAGATCTGTCCC+TGG + chr7_1:13313989-13314008 Msa1010350:intron 35.0%
AATTGATCAATGCCTTACCA+GGG - chr7_1:13314009-13314028 None:intergenic 35.0%
AAATTGATCAATGCCTTACC+AGG - chr7_1:13314010-13314029 None:intergenic 35.0%
! ATAGATTTTCATGGCAGGTT+AGG - chr7_1:13314147-13314166 None:intergenic 35.0%
TTGTGATACTTGGAATGCAT+TGG + chr7_1:13314217-13314236 Msa1010350:intron 35.0%
! TCATCATGATTCATGGCTTT+TGG + chr7_1:13314420-13314439 Msa1010350:intron 35.0%
CCATGTTCCAAAATTTGAGA+CGG + chr7_1:13314609-13314628 Msa1010350:intron 35.0%
! TTCCAAAATTTGAGACGGAA+AGG + chr7_1:13314614-13314633 Msa1010350:intron 35.0%
! TCCAAAATTTGAGACGGAAA+GGG + chr7_1:13314615-13314634 Msa1010350:intron 35.0%
ATGAAACGTTTGCAAGAATC+TGG + chr7_1:13314809-13314828 Msa1010350:CDS 35.0%
!! TTTTTGTCGTTTCTGTTGAG+AGG - chr7_1:13314837-13314856 None:intergenic 35.0%
ACAGAAACGACAAAAACTGT+CGG + chr7_1:13314841-13314860 Msa1010350:CDS 35.0%
CTATGACCTTATACTTAGCA+AGG + chr7_1:13314889-13314908 Msa1010350:CDS 35.0%
ATACTTAGCAAGGAAAACTC+AGG + chr7_1:13314899-13314918 Msa1010350:CDS 35.0%
TACTTAGCAAGGAAAACTCA+GGG + chr7_1:13314900-13314919 Msa1010350:CDS 35.0%
TGTTTATTAAGCGCAGCAAT+AGG - chr7_1:13314962-13314981 None:intergenic 35.0%
TGCGCTTAATAAACACATGA+AGG + chr7_1:13314967-13314986 Msa1010350:CDS 35.0%
GGCACTTATAAACAAGAGTA+TGG + chr7_1:13314988-13315007 Msa1010350:CDS 35.0%
ATAATGCAGATGACAAGTAC+TGG + chr7_1:13315295-13315314 Msa1010350:CDS 35.0%
!! AGATGACAAGTACTGGATAT+GGG + chr7_1:13315302-13315321 Msa1010350:CDS 35.0%
! GATTTTGCATCTATTCCTGT+TGG + chr7_1:13315325-13315344 Msa1010350:CDS 35.0%
! ATGTAACAAGTTTTGCCAAC+AGG - chr7_1:13315343-13315362 None:intergenic 35.0%
ATCCGTTGACAAGAAAAACA+TGG - chr7_1:13315412-13315431 None:intergenic 35.0%
GAAATGGTTGGATTTCTGAA+TGG + chr7_1:13315486-13315505 Msa1010350:exon 35.0%
TGAGACAACAAGGGGAAAAA+CGG - chr7_1:13313510-13313529 Msa1010340:intron 40.0%
!!! TGGGTTTTTGAGACAACAAG+GGG - chr7_1:13313518-13313537 Msa1010340:intron 40.0%
!! GAAATAGGTTCTGAATGTGC+AGG - chr7_1:13313881-13313900 None:intergenic 40.0%
AGAACCTATTTCCCTTCCTA+TGG + chr7_1:13313889-13313908 Msa1010350:intron 40.0%
AACACCATAGGAAGGGAAAT+AGG - chr7_1:13313896-13313915 None:intergenic 40.0%
CCAAAGAAACACCATAGGAA+GGG - chr7_1:13313903-13313922 None:intergenic 40.0%
ACCAAAGAAACACCATAGGA+AGG - chr7_1:13313904-13313923 None:intergenic 40.0%
CCAATGTAACTATGAAGCCA+CGG - chr7_1:13314382-13314401 None:intergenic 40.0%
CGTGGCTTCATAGTTACATT+GGG + chr7_1:13314380-13314399 Msa1010350:intron 40.0%
!!! CCGTCTCAAATTTTGGAACA+TGG - chr7_1:13314612-13314631 None:intergenic 40.0%
! ACCCTTTCCGTCTCAAATTT+TGG - chr7_1:13314619-13314638 None:intergenic 40.0%
TAGAGTATACGCTCTTCATC+TGG - chr7_1:13314872-13314891 None:intergenic 40.0%
TATTAAGCGCAGCAATAGGA+AGG - chr7_1:13314958-13314977 None:intergenic 40.0%
AACAGAATTTGAGCCTTCCA+AGG + chr7_1:13315060-13315079 Msa1010350:CDS 40.0%
CTTCCAAGGATATAACTGGT+GGG + chr7_1:13315074-13315093 Msa1010350:CDS 40.0%
GTGCTTGCAATGCATTTCAT+TGG + chr7_1:13315153-13315172 Msa1010350:CDS 40.0%
!! TTCCACATGTGATGGATGTT+TGG + chr7_1:13315183-13315202 Msa1010350:CDS 40.0%
!! ATGTGATGGATGTTTGGAGT+GGG + chr7_1:13315189-13315208 Msa1010350:CDS 40.0%
!! GATGTTTGGAGTGGGTTAAA+AGG + chr7_1:13315197-13315216 Msa1010350:CDS 40.0%
!! CAGATGACAAGTACTGGATA+TGG + chr7_1:13315301-13315320 Msa1010350:CDS 40.0%
!! GATGACAAGTACTGGATATG+GGG + chr7_1:13315303-13315322 Msa1010350:CDS 40.0%
! ACGGATGAGCTTTTGTTCAA+CGG + chr7_1:13315426-13315445 Msa1010350:CDS 40.0%
! ATGAGCTTTTGTTCAACGGA+TGG + chr7_1:13315430-13315449 Msa1010350:CDS 40.0%
TGAGACAACAAGGGGAAAAA+CGG - chr7_1:13313510-13313529 Msa1010340:intron 40.0%
!!! TGGGTTTTTGAGACAACAAG+GGG - chr7_1:13313518-13313537 Msa1010340:intron 40.0%
!! GAAATAGGTTCTGAATGTGC+AGG - chr7_1:13313881-13313900 None:intergenic 40.0%
AGAACCTATTTCCCTTCCTA+TGG + chr7_1:13313889-13313908 Msa1010350:intron 40.0%
AACACCATAGGAAGGGAAAT+AGG - chr7_1:13313896-13313915 None:intergenic 40.0%
CCAAAGAAACACCATAGGAA+GGG - chr7_1:13313903-13313922 None:intergenic 40.0%
ACCAAAGAAACACCATAGGA+AGG - chr7_1:13313904-13313923 None:intergenic 40.0%
CCAATGTAACTATGAAGCCA+CGG - chr7_1:13314382-13314401 None:intergenic 40.0%
CGTGGCTTCATAGTTACATT+GGG + chr7_1:13314380-13314399 Msa1010350:intron 40.0%
!!! CCGTCTCAAATTTTGGAACA+TGG - chr7_1:13314612-13314631 None:intergenic 40.0%
! ACCCTTTCCGTCTCAAATTT+TGG - chr7_1:13314619-13314638 None:intergenic 40.0%
TAGAGTATACGCTCTTCATC+TGG - chr7_1:13314872-13314891 None:intergenic 40.0%
TATTAAGCGCAGCAATAGGA+AGG - chr7_1:13314958-13314977 None:intergenic 40.0%
AACAGAATTTGAGCCTTCCA+AGG + chr7_1:13315060-13315079 Msa1010350:CDS 40.0%
CTTCCAAGGATATAACTGGT+GGG + chr7_1:13315074-13315093 Msa1010350:CDS 40.0%
GTGCTTGCAATGCATTTCAT+TGG + chr7_1:13315153-13315172 Msa1010350:CDS 40.0%
!! TTCCACATGTGATGGATGTT+TGG + chr7_1:13315183-13315202 Msa1010350:CDS 40.0%
!! ATGTGATGGATGTTTGGAGT+GGG + chr7_1:13315189-13315208 Msa1010350:CDS 40.0%
!! GATGTTTGGAGTGGGTTAAA+AGG + chr7_1:13315197-13315216 Msa1010350:CDS 40.0%
!! CAGATGACAAGTACTGGATA+TGG + chr7_1:13315301-13315320 Msa1010350:CDS 40.0%
!! GATGACAAGTACTGGATATG+GGG + chr7_1:13315303-13315322 Msa1010350:CDS 40.0%
! ACGGATGAGCTTTTGTTCAA+CGG + chr7_1:13315426-13315445 Msa1010350:CDS 40.0%
! ATGAGCTTTTGTTCAACGGA+TGG + chr7_1:13315430-13315449 Msa1010350:CDS 40.0%
CCCTTCCTATGGTGTTTCTT+TGG + chr7_1:13313900-13313919 Msa1010350:intron 45.0%
GTTTAGATCTGTCCCTGGTA+AGG + chr7_1:13313994-13314013 Msa1010350:intron 45.0%
TGTCATCCCAATGACTACTC+AGG + chr7_1:13314351-13314370 Msa1010350:intron 45.0%
GTAACTATGAAGCCACGGTT+CGG - chr7_1:13314377-13314396 None:intergenic 45.0%
CCGTGGCTTCATAGTTACAT+TGG + chr7_1:13314379-13314398 Msa1010350:intron 45.0%
GAGCCTTCCAAGGATATAAC+TGG + chr7_1:13315070-13315089 Msa1010350:CDS 45.0%
CCACCAGTTATATCCTTGGA+AGG - chr7_1:13315076-13315095 None:intergenic 45.0%
CCTTCCAAGGATATAACTGG+TGG + chr7_1:13315073-13315092 Msa1010350:CDS 45.0%
ATGCCCACCAGTTATATCCT+TGG - chr7_1:13315080-13315099 None:intergenic 45.0%
! GTGGGCATTTTTACAGCGAA+GGG + chr7_1:13315092-13315111 Msa1010350:CDS 45.0%
GAGAGAGTTTCCACATGTGA+TGG + chr7_1:13315175-13315194 Msa1010350:CDS 45.0%
CTCCAAACATCCATCACATG+TGG - chr7_1:13315188-13315207 None:intergenic 45.0%
!! CATGTGATGGATGTTTGGAG+TGG + chr7_1:13315188-13315207 Msa1010350:CDS 45.0%
!! TTGGAGTGGGTTAAAAGGAG+TGG + chr7_1:13315202-13315221 Msa1010350:CDS 45.0%
!! TGGAGTGGGTTAAAAGGAGT+GGG + chr7_1:13315203-13315222 Msa1010350:CDS 45.0%
GGTCATCACAACTCAAGTCA+CGG + chr7_1:13315225-13315244 Msa1010350:CDS 45.0%
GTCATCACAACTCAAGTCAC+GGG + chr7_1:13315226-13315245 Msa1010350:CDS 45.0%
CCCTTCCTATGGTGTTTCTT+TGG + chr7_1:13313900-13313919 Msa1010350:intron 45.0%
GTTTAGATCTGTCCCTGGTA+AGG + chr7_1:13313994-13314013 Msa1010350:intron 45.0%
TGTCATCCCAATGACTACTC+AGG + chr7_1:13314351-13314370 Msa1010350:intron 45.0%
GTAACTATGAAGCCACGGTT+CGG - chr7_1:13314377-13314396 None:intergenic 45.0%
CCGTGGCTTCATAGTTACAT+TGG + chr7_1:13314379-13314398 Msa1010350:intron 45.0%
GAGCCTTCCAAGGATATAAC+TGG + chr7_1:13315070-13315089 Msa1010350:CDS 45.0%
CCACCAGTTATATCCTTGGA+AGG - chr7_1:13315076-13315095 None:intergenic 45.0%
CCTTCCAAGGATATAACTGG+TGG + chr7_1:13315073-13315092 Msa1010350:CDS 45.0%
ATGCCCACCAGTTATATCCT+TGG - chr7_1:13315080-13315099 None:intergenic 45.0%
! GTGGGCATTTTTACAGCGAA+GGG + chr7_1:13315092-13315111 Msa1010350:CDS 45.0%
GAGAGAGTTTCCACATGTGA+TGG + chr7_1:13315175-13315194 Msa1010350:CDS 45.0%
CTCCAAACATCCATCACATG+TGG - chr7_1:13315188-13315207 None:intergenic 45.0%
!! CATGTGATGGATGTTTGGAG+TGG + chr7_1:13315188-13315207 Msa1010350:CDS 45.0%
!! TTGGAGTGGGTTAAAAGGAG+TGG + chr7_1:13315202-13315221 Msa1010350:CDS 45.0%
!! TGGAGTGGGTTAAAAGGAGT+GGG + chr7_1:13315203-13315222 Msa1010350:CDS 45.0%
GGTCATCACAACTCAAGTCA+CGG + chr7_1:13315225-13315244 Msa1010350:CDS 45.0%
GTCATCACAACTCAAGTCAC+GGG + chr7_1:13315226-13315245 Msa1010350:CDS 45.0%
GGCGAAGTGTGACTCCAAAT+GGG - chr7_1:13313537-13313556 None:intergenic 50.0%
! CATTTGGAGTCACACTTCGC+CGG + chr7_1:13313536-13313555 Msa1010350:five_prime_UTR 50.0%
! GCCGGAAAACTCCATTTTCC+CGG + chr7_1:13313554-13313573 Msa1010350:five_prime_UTR 50.0%
! GCCGGGAAAATGGAGTTTTC+CGG - chr7_1:13313558-13313577 None:intergenic 50.0%
! TCCATTTTCCCGGCGAGAAT+CGG + chr7_1:13313564-13313583 Msa1010350:five_prime_UTR 50.0%
ACAAAGCTGGTGTGCCTCTT+AGG + chr7_1:13314104-13314123 Msa1010350:intron 50.0%
GTTCGGCCTGAGTAGTCATT+GGG - chr7_1:13314360-13314379 None:intergenic 50.0%
! GGTGGGCATTTTTACAGCGA+AGG + chr7_1:13315091-13315110 Msa1010350:CDS 50.0%
!! GGAGTGGGTTAAAAGGAGTG+GGG + chr7_1:13315204-13315223 Msa1010350:CDS 50.0%
GGCGAAGTGTGACTCCAAAT+GGG - chr7_1:13313537-13313556 None:intergenic 50.0%
! CATTTGGAGTCACACTTCGC+CGG + chr7_1:13313536-13313555 Msa1010350:five_prime_UTR 50.0%
! GCCGGAAAACTCCATTTTCC+CGG + chr7_1:13313554-13313573 Msa1010350:five_prime_UTR 50.0%
! GCCGGGAAAATGGAGTTTTC+CGG - chr7_1:13313558-13313577 None:intergenic 50.0%
! TCCATTTTCCCGGCGAGAAT+CGG + chr7_1:13313564-13313583 Msa1010350:five_prime_UTR 50.0%
ACAAAGCTGGTGTGCCTCTT+AGG + chr7_1:13314104-13314123 Msa1010350:intron 50.0%
GTTCGGCCTGAGTAGTCATT+GGG - chr7_1:13314360-13314379 None:intergenic 50.0%
! GGTGGGCATTTTTACAGCGA+AGG + chr7_1:13315091-13315110 Msa1010350:CDS 50.0%
!! GGAGTGGGTTAAAAGGAGTG+GGG + chr7_1:13315204-13315223 Msa1010350:CDS 50.0%
CGGCGAAGTGTGACTCCAAA+TGG - chr7_1:13313538-13313557 None:intergenic 55.0%
! ACCGATTCTCGCCGGGAAAA+TGG - chr7_1:13313568-13313587 None:intergenic 55.0%
! ATTTTCCCGGCGAGAATCGG+TGG + chr7_1:13313567-13313586 Msa1010350:five_prime_UTR 55.0%
GGTTCGGCCTGAGTAGTCAT+TGG - chr7_1:13314361-13314380 None:intergenic 55.0%
ACTGAAGCTCCCGCATATGC+AGG + chr7_1:13315555-13315574 Msa1010350:three_prime_UTR 55.0%
CTGAAGCTCCCGCATATGCA+GGG + chr7_1:13315556-13315575 Msa1010350:three_prime_UTR 55.0%
CGGCGAAGTGTGACTCCAAA+TGG - chr7_1:13313538-13313557 None:intergenic 55.0%
! ACCGATTCTCGCCGGGAAAA+TGG - chr7_1:13313568-13313587 None:intergenic 55.0%
! ATTTTCCCGGCGAGAATCGG+TGG + chr7_1:13313567-13313586 Msa1010350:five_prime_UTR 55.0%
GGTTCGGCCTGAGTAGTCAT+TGG - chr7_1:13314361-13314380 None:intergenic 55.0%
ACTGAAGCTCCCGCATATGC+AGG + chr7_1:13315555-13315574 Msa1010350:three_prime_UTR 55.0%
CTGAAGCTCCCGCATATGCA+GGG + chr7_1:13315556-13315575 Msa1010350:three_prime_UTR 55.0%
!! AAGCGACCACCGATTCTCGC+CGG - chr7_1:13313576-13313595 None:intergenic 60.0%
TGACTACTCAGGCCGAACCG+TGG + chr7_1:13314362-13314381 Msa1010350:intron 60.0%
ATGCGGGAGCTTCAGTGCAC+CGG - chr7_1:13315551-13315570 None:intergenic 60.0%
!! AAGCGACCACCGATTCTCGC+CGG - chr7_1:13313576-13313595 None:intergenic 60.0%
TGACTACTCAGGCCGAACCG+TGG + chr7_1:13314362-13314381 Msa1010350:intron 60.0%
ATGCGGGAGCTTCAGTGCAC+CGG - chr7_1:13315551-13315570 None:intergenic 60.0%
!! AGCGACCACCGATTCTCGCC+GGG - chr7_1:13313575-13313594 None:intergenic 65.0%
TGCGGGAGCTTCAGTGCACC+GGG - chr7_1:13315550-13315569 None:intergenic 65.0%
GCTCCCGCATATGCAGGGTC+CGG + chr7_1:13315561-13315580 Msa1010350:three_prime_UTR 65.0%
CTCCCGCATATGCAGGGTCC+GGG + chr7_1:13315562-13315581 Msa1010350:three_prime_UTR 65.0%
!! AGCGACCACCGATTCTCGCC+GGG - chr7_1:13313575-13313594 None:intergenic 65.0%
TGCGGGAGCTTCAGTGCACC+GGG - chr7_1:13315550-13315569 None:intergenic 65.0%
GCTCCCGCATATGCAGGGTC+CGG + chr7_1:13315561-13315580 Msa1010350:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 13313474 13315584 13313474 ID=Msa1010350;Name=Msa1010350
chr7_1 mRNA 13313474 13315584 13313474 ID=Msa1010350-mRNA-1;Parent=Msa1010350;Name=Msa1010350-mRNA-1;_AED=0.00;_eAED=0.00;_QI=132|0|0.5|1|0|0.5|2|80|231
chr7_1 exon 13313474 13313605 13313474 ID=Msa1010350-mRNA-1:exon:3352;Parent=Msa1010350-mRNA-1
chr7_1 exon 13314809 13315584 13314809 ID=Msa1010350-mRNA-1:exon:3353;Parent=Msa1010350-mRNA-1
chr7_1 five_prime_UTR 13313474 13313605 13313474 ID=Msa1010350-mRNA-1:five_prime_utr;Parent=Msa1010350-mRNA-1
chr7_1 CDS 13314809 13315504 13314809 ID=Msa1010350-mRNA-1:cds;Parent=Msa1010350-mRNA-1
chr7_1 three_prime_UTR 13315505 13315584 13315505 ID=Msa1010350-mRNA-1:three_prime_utr;Parent=Msa1010350-mRNA-1
Gene Sequence

>Msa1010350

ATGAAACGTTTGCAAGAATCTGGTTCCTCTCAACAGAAACGACAAAAACTGTCGGCGCTGCCAGATGAAGAGCGTATACTCTATGACCTTATACTTAGCAAGGAAAACTCAGGGATCTCAAAAACAGACATGAGAAGAGAAACAAACCTTCCTATTGCTGCGCTTAATAAACACATGAAGGCACTTATAAACAAGAGTATGGTAAAGGAACTTCCTTCCATTAAAAACAAAGGTATAAAGATCTACATGGGAACAGAATTTGAGCCTTCCAAGGATATAACTGGTGGGCATTTTTACAGCGAAGGGAGTCTTGATACGCTTTTTATAGATGCTCTAAAGACAGTGTGCTTGCAATGCATTTCATTGGAGAGAGTTTCCACATGTGATGGATGTTTGGAGTGGGTTAAAAGGAGTGGGGTCATCACAACTCAAGTCACGGGAGAACAAATAGAAGAGATTTTGCAAACTTTGGTTTTAGATGATGAGATAATGCAGATGACAAGTACTGGATATGGGGATTTTGCATCTATTCCTGTTGGCAAAACTTGTTACATATGCAAAAGCAAGGGTGAAAAGAAATCTGCTGACTCGACTCCCTTTCCATGTTTTTCTTGTCAACGGATGAGCTTTTGTTCAACGGATGGCGTTGTCTCTCCAACAACATGTGTCTATTTTCAGAAATGGTTGGATTTCTGA

Protein sequence

>Msa1010350

MKRLQESGSSQQKRQKLSALPDEERILYDLILSKENSGISKTDMRRETNLPIAALNKHMKALINKSMVKELPSIKNKGIKIYMGTEFEPSKDITGGHFYSEGSLDTLFIDALKTVCLQCISLERVSTCDGCLEWVKRSGVITTQVTGEQIEEILQTLVLDDEIMQMTSTGYGDFASIPVGKTCYICKSKGEKKSADSTPFPCFSCQRMSFCSTDGVVSPTTCVYFQKWLDF*