AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0655560


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0655560 MtrunA17_Chr8g0375271 94.865 370 12 1 1 370 1 363 0.0 710
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0655560 AT2G36740.1 58.807 352 129 4 14 358 9 351 3.13e-126 367
Msa0655560 AT2G36740.2 62.376 303 105 3 10 305 5 305 5.14e-116 340

Find 85 sgRNAs with CRISPR-Local

Find 323 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCATCATTATCATCAATTT+TGG 0.077559 4_3:+64247889 None:intergenic
GAAGAAAATCTTATCTAATT+TGG 0.115613 4_3:-64247921 Msa0655560:CDS
GGCTTATATGATTCAGTTTC+TGG 0.127458 4_3:-64244202 Msa0655560:CDS
AATTATGAACTTGAGGAATT+TGG 0.176156 4_3:-64246915 Msa0655560:CDS
TCGCCTTTCTTCCTTATTAC+TGG 0.196750 4_3:+64247098 None:intergenic
TATGATTCAGTTTCTGGATA+TGG 0.207235 4_3:-64244196 Msa0655560:CDS
GTGCATAAAACTGTCTTTAA+TGG 0.216607 4_3:-64246848 Msa0655560:CDS
CCGCGATTTCAGCTTCTTCT+TGG 0.241131 4_3:+64248172 None:intergenic
CAATGGCTTCTTTCATGATT+TGG 0.245034 4_3:+64243968 None:intergenic
TTCAACAAGATGAATTGTTC+TGG 0.284399 4_3:-64248236 Msa0655560:CDS
CAACCTGTTTGCGTTATTAC+TGG 0.293930 4_3:-64245341 Msa0655560:CDS
CTCTAGAAAAGAAACGAATA+TGG 0.304931 4_3:-64244227 Msa0655560:CDS
TTAACTTCAAATCTTTCTTA+AGG 0.305053 4_3:-64243793 Msa0655560:three_prime_UTR
GGCTGTTCTTCATCGGGTTC+AGG 0.307025 4_3:+64248025 None:intergenic
TAACTTCAAATCTTTCTTAA+GGG 0.318251 4_3:-64243792 Msa0655560:three_prime_UTR
GAGGCCTGTTTCAGTAATCT+TGG 0.349648 4_3:-64243888 Msa0655560:three_prime_UTR
GCGAACAATGACGGAAGTTC+TGG 0.369171 4_3:+64247793 None:intergenic
GTTGGGATTAAAATAGAAAC+AGG 0.376767 4_3:-64243917 Msa0655560:three_prime_UTR
AGGCCTGTTTCAGTAATCTT+GGG 0.383670 4_3:-64243887 Msa0655560:three_prime_UTR
ACAATGGAGGAAAAGAATTC+AGG 0.384881 4_3:-64248348 Msa0655560:CDS
ATAACGCAAACAGGTTGTTC+TGG 0.392827 4_3:+64245347 None:intergenic
CGTATTTGGAGTTTACTAAA+GGG 0.400482 4_3:-64246706 Msa0655560:CDS
GCGTATGGCAGCCCAGTCTT+TGG 0.402777 4_3:+64245138 None:intergenic
GATATTGGAGATAACCTTGT+AGG 0.403997 4_3:+64247730 None:intergenic
ATGCGAAGGAGGTAATGATT+AGG 0.411108 4_3:-64247823 Msa0655560:CDS
AGATGAATTGTTCTGGGGTC+AGG 0.416421 4_3:-64248229 Msa0655560:CDS
ATACACTACATATCACAAAA+TGG 0.416807 4_3:-64246818 Msa0655560:intron
CACGATTCAAACCTCAGGTT+GGG 0.438979 4_3:-64243934 Msa0655560:three_prime_UTR
AGACCCAAGATTACTGAAAC+AGG 0.443789 4_3:+64243884 None:intergenic
TCAACAAGATGAATTGTTCT+GGG 0.454323 4_3:-64248235 Msa0655560:CDS
ATCTTGTCTCGGGTATTGTA+TGG 0.456155 4_3:+64243664 None:intergenic
TAGAGAATAGTTTGATAATG+AGG 0.464509 4_3:+64243735 None:intergenic
TTAGCCAATGTCGTCTTCGC+AGG 0.468618 4_3:+64247956 None:intergenic
AAATAGAAACAGGGTATTTG+AGG 0.471877 4_3:-64243907 Msa0655560:three_prime_UTR
TCGTATTTGGAGTTTACTAA+AGG 0.472369 4_3:-64246707 Msa0655560:CDS
CCTCCTTCGCATCATCGTCC+TGG 0.473697 4_3:+64247834 None:intergenic
CACATGATCGGTCCTTGGCT+CGG 0.478772 4_3:-64244123 Msa0655560:CDS
GAATGGCTTCTCTTTCAGCT+TGG 0.491571 4_3:+64247771 None:intergenic
AGTTACGTCTTGATCGAAAT+CGG 0.494921 4_3:+64248137 None:intergenic
GAGATCGAATCTTCTACTGC+TGG 0.496740 4_3:-64248316 Msa0655560:CDS
AAACCAGTAATAACGCAAAC+AGG 0.498211 4_3:+64245338 None:intergenic
AAGAAAGGCTCTTACTTGGC+AGG 0.501328 4_3:+64245314 None:intergenic
CAGTAATCTTGGGTCTTCTG+TGG 0.507755 4_3:-64243877 Msa0655560:three_prime_UTR
AGTTTGATAATGAGGAAATG+AGG 0.513822 4_3:+64243743 None:intergenic
ATATATTAGAATCTTGTCTC+GGG 0.515538 4_3:+64243654 None:intergenic
TTCATCACGATTCAAACCTC+AGG 0.516830 4_3:-64243939 Msa0655560:three_prime_UTR
TGGGCCCCAAGAGAAGGTTC+GGG 0.516834 4_3:-64248420 None:intergenic
TTCAGCTTGGCGAACAATGA+CGG 0.524822 4_3:+64247784 None:intergenic
ACATCCACATGATCGGTCCT+TGG 0.525200 4_3:-64244128 Msa0655560:CDS
AGGTACCGTGATCCAAAGAC+TGG 0.525622 4_3:-64245150 Msa0655560:CDS
GAATCTTCATCCTCAAAAGT+AGG 0.528439 4_3:+64244088 None:intergenic
CTGCAGAAATTATGAACTTG+AGG 0.529753 4_3:-64246922 Msa0655560:intron
GTTTGATAATGAGGAAATGA+GGG 0.533328 4_3:+64243744 None:intergenic
TGCTTTGAGAGCTTCGCGAA+TGG 0.533499 4_3:+64247754 None:intergenic
AATATATTAGAATCTTGTCT+CGG 0.537809 4_3:+64243653 None:intergenic
TCTAGAAAAGAAACGAATAT+GGG 0.542033 4_3:-64244226 Msa0655560:CDS
TCACGATTCAAACCTCAGGT+TGG 0.550303 4_3:-64243935 Msa0655560:three_prime_UTR
AAAATATACATCCACATGAT+CGG 0.556585 4_3:-64244135 Msa0655560:CDS
AAAATTGATGATAATGATGA+CGG 0.559093 4_3:-64247887 Msa0655560:CDS
AAGTTTACTTGCAATCAAGA+AGG 0.566909 4_3:+64245076 None:intergenic
CAGCCAGTAATAAGGAAGAA+AGG 0.573774 4_3:-64247101 Msa0655560:CDS
AGCTCTCAAAGCAACCTACA+AGG 0.574053 4_3:-64247744 Msa0655560:intron
CGTGCATCTCGAGCGACAAG+AGG 0.584790 4_3:-64248291 Msa0655560:CDS
GTATTTGGAGTTTACTAAAG+GGG 0.598121 4_3:-64246705 Msa0655560:CDS
CGCACATTCTTGAGACGTTG+TGG 0.601571 4_3:+64246661 None:intergenic
CGAGCCAAGGACCGATCATG+TGG 0.604117 4_3:+64244124 None:intergenic
AAGTGTTAACACTGAACAGA+AGG 0.605319 4_3:-64248394 Msa0655560:five_prime_UTR
ATATCCTGCGAAGACGACAT+TGG 0.607051 4_3:-64247960 Msa0655560:CDS
GGAGAAGAAAATGTCACAAG+AGG 0.609231 4_3:-64247075 Msa0655560:CDS
TGTGATATGTAGTGTATCTG+TGG 0.609479 4_3:+64246824 None:intergenic
GCAGCCCAGTCTTTGGATCA+CGG 0.611548 4_3:+64245145 None:intergenic
CAACCAGGACGATGATGCGA+AGG 0.612565 4_3:-64247837 Msa0655560:CDS
AAACAACAAGAACAACAACC+AGG 0.612812 4_3:-64247852 Msa0655560:CDS
CCAGGACGATGATGCGAAGG+AGG 0.615528 4_3:-64247834 Msa0655560:CDS
ATCGTGATGAAGCACAGCAA+TGG 0.617402 4_3:+64243951 None:intergenic
AAGATTCTGACTAACTGCCT+TGG 0.625749 4_3:-64244072 Msa0655560:intron
AGAAAAGAAACGAATATGGG+AGG 0.647868 4_3:-64244223 Msa0655560:CDS
CGAGCGAGTTAGTACAATGG+AGG 0.651028 4_3:-64248361 Msa0655560:exon
GTGCGAGCGAGTTAGTACAA+TGG 0.652562 4_3:-64248364 Msa0655560:exon
AATTCTACGAAACCGAGCCA+AGG 0.655235 4_3:+64244111 None:intergenic
CAACAAGATGAATTGTTCTG+GGG 0.658361 4_3:-64248234 Msa0655560:CDS
CCAAGAAGAAGCTGAAATCG+CGG 0.669602 4_3:-64248172 Msa0655560:CDS
AGTAATAAGGAAGAAAGGCG+AGG 0.677909 4_3:-64247096 Msa0655560:CDS
GGTACCGTGATCCAAAGACT+GGG 0.697285 4_3:-64245149 Msa0655560:CDS
TTGGGATTAAAATAGAAACA+GGG 0.733790 4_3:-64243916 Msa0655560:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATGTTTTTTTTCTTTTTTT+TGG - chr4_3:64244924-64244943 Msa0655560:intron 10.0%
!!! TTTAATCTATTGTTGTTATA+AGG + chr4_3:64244568-64244587 None:intergenic 15.0%
!!! CTAACTAATTTTTGTAAATT+CGG + chr4_3:64245757-64245776 None:intergenic 15.0%
!! TTCAATACAAAAAAAATTGA+CGG - chr4_3:64246348-64246367 Msa0655560:intron 15.0%
!!! GTTTAATTAGTTTAAAGTTA+GGG - chr4_3:64246370-64246389 Msa0655560:intron 15.0%
!! TACTGTTATAAAAGAATATT+AGG + chr4_3:64247024-64247043 None:intergenic 15.0%
!!! ATCATAAAAAGTTATCTTTT+TGG + chr4_3:64247092-64247111 None:intergenic 15.0%
!! TTATAAGAACAATTATAACT+AGG + chr4_3:64247537-64247556 None:intergenic 15.0%
!! TATAAAAGAAGACTAAAAAT+AGG + chr4_3:64248019-64248038 None:intergenic 15.0%
!!! TTTTTATCAAAAAATGAGTA+GGG + chr4_3:64248220-64248239 None:intergenic 15.0%
!! GAAGAAAATCTTATCTAATT+TGG - chr4_3:64244129-64244148 Msa0655560:CDS 20.0%
!!! TCATCATTATCATCAATTTT+GGG + chr4_3:64244163-64244182 None:intergenic 20.0%
!!! AAAATTGATGATAATGATGA+CGG - chr4_3:64244163-64244182 Msa0655560:CDS 20.0%
!! TTATTTCAATAATCTTTCTG+GGG + chr4_3:64244639-64244658 None:intergenic 20.0%
!! CTTATTTCAATAATCTTTCT+GGG + chr4_3:64244640-64244659 None:intergenic 20.0%
!! AACTTAAATGCTTATCATAT+AGG + chr4_3:64244845-64244864 None:intergenic 20.0%
!! AATATAGTGCTAGAATAAAA+GGG + chr4_3:64245416-64245435 None:intergenic 20.0%
!! AAATATAGTGCTAGAATAAA+AGG + chr4_3:64245417-64245436 None:intergenic 20.0%
!!! TTTATTCTAGCACTATATTT+TGG - chr4_3:64245417-64245436 Msa0655560:intron 20.0%
!!! ATTAGTTTATAGACAATAAC+TGG - chr4_3:64245572-64245591 Msa0655560:intron 20.0%
!!! ATTTTTGTAAATTCGGTATT+TGG + chr4_3:64245750-64245769 None:intergenic 20.0%
!! CGAATTTACAAAAATTAGTT+AGG - chr4_3:64245755-64245774 Msa0655560:intron 20.0%
!! TACAAAAATTAGTTAGGTTT+AGG - chr4_3:64245761-64245780 Msa0655560:intron 20.0%
!!! ACTAAGTGTTTTAGATAATT+AGG - chr4_3:64246041-64246060 Msa0655560:intron 20.0%
!!! CTAAGTGTTTTAGATAATTA+GGG - chr4_3:64246042-64246061 Msa0655560:intron 20.0%
!!! GTAAAACTTTTTCTACTTAA+AGG + chr4_3:64246161-64246180 None:intergenic 20.0%
!!! GGTTTAATTAGTTTAAAGTT+AGG - chr4_3:64246369-64246388 Msa0655560:intron 20.0%
!! AAAAAAAAAAATAGTTCAGC+CGG - chr4_3:64246814-64246833 Msa0655560:intron 20.0%
!!! CTTTTAAAATAATTCGACAA+CGG - chr4_3:64246946-64246965 Msa0655560:intron 20.0%
!! TAATTCAATAACATCATAGT+GGG + chr4_3:64247204-64247223 None:intergenic 20.0%
!!! TAAATATAAAAGCATTCATG+TGG - chr4_3:64247654-64247673 Msa0655560:intron 20.0%
!!! AAATATAAAAGCATTCATGT+GGG - chr4_3:64247655-64247674 Msa0655560:intron 20.0%
!!! TGCTTGTAATTGATTTTAAT+TGG - chr4_3:64247765-64247784 Msa0655560:CDS 20.0%
!!! GCTTGTAATTGATTTTAATT+GGG - chr4_3:64247766-64247785 Msa0655560:CDS 20.0%
!!! CTTGTAATTGATTTTAATTG+GGG - chr4_3:64247767-64247786 Msa0655560:CDS 20.0%
!!! CTTTTTATCAAAAAATGAGT+AGG + chr4_3:64248221-64248240 None:intergenic 20.0%
!! TTAACTTCAAATCTTTCTTA+AGG - chr4_3:64248257-64248276 Msa0655560:CDS 20.0%
!! TAACTTCAAATCTTTCTTAA+GGG - chr4_3:64248258-64248277 Msa0655560:CDS 20.0%
!! AATATATTAGAATCTTGTCT+CGG + chr4_3:64248400-64248419 None:intergenic 20.0%
!! TAATTCTTCTTGATTTTCTC+AGG - chr4_3:64244000-64244019 Msa0655560:intron 25.0%
!! GTCATCATTATCATCAATTT+TGG + chr4_3:64244164-64244183 None:intergenic 25.0%
! TGAATCACAGAAAAAGATAT+TGG + chr4_3:64244338-64244357 None:intergenic 25.0%
!! ATCTTTTTCTGTGATTCATT+AGG - chr4_3:64244340-64244359 Msa0655560:intron 25.0%
!! TCTTTTTCTGTGATTCATTA+GGG - chr4_3:64244341-64244360 Msa0655560:intron 25.0%
! GCTTATTTCAATAATCTTTC+TGG + chr4_3:64244641-64244660 None:intergenic 25.0%
! AATAAGCTTATAACAGCTTA+TGG - chr4_3:64244654-64244673 Msa0655560:intron 25.0%
! TACATAGATTCTGTTAAGAT+TGG + chr4_3:64244744-64244763 None:intergenic 25.0%
! CTTAACAGAATCTATGTAAA+TGG - chr4_3:64244746-64244765 Msa0655560:intron 25.0%
! AAGCATAATTGAAACATCAA+AGG + chr4_3:64245102-64245121 None:intergenic 25.0%
!! TGATGTTTCAATTATGCTTT+TGG - chr4_3:64245103-64245122 Msa0655560:CDS 25.0%
! AATTATGAACTTGAGGAATT+TGG - chr4_3:64245135-64245154 Msa0655560:CDS 25.0%
! ATACACTACATATCACAAAA+TGG - chr4_3:64245232-64245251 Msa0655560:intron 25.0%
! ACAGATTGCTATATGTAAAA+TGG + chr4_3:64245306-64245325 None:intergenic 25.0%
!!! AGCAATCTGTTTATTTTTTC+AGG - chr4_3:64245316-64245335 Msa0655560:intron 25.0%
! ATGTAATATATTCCGTTTCT+TGG - chr4_3:64245459-64245478 Msa0655560:intron 25.0%
! AATGACGAAACAATTTCTTT+GGG + chr4_3:64245516-64245535 None:intergenic 25.0%
! AAATTAGTTAGGTTTAGGAA+AGG - chr4_3:64245766-64245785 Msa0655560:intron 25.0%
! ATGTATAGTAAACAATGAGT+AGG - chr4_3:64245804-64245823 Msa0655560:intron 25.0%
!! TATCTAAAACACTTAGTTGT+GGG + chr4_3:64246038-64246057 None:intergenic 25.0%
!! TTATCTAAAACACTTAGTTG+TGG + chr4_3:64246039-64246058 None:intergenic 25.0%
! TAAGATTTGCAACTATGTAT+GGG - chr4_3:64246191-64246210 Msa0655560:intron 25.0%
! GAATTCGTTAGAGAAAAAAT+TGG - chr4_3:64246319-64246338 Msa0655560:intron 25.0%
!! TAACAATATTTGAGGTACAA+TGG + chr4_3:64246861-64246880 None:intergenic 25.0%
! TTGTACCTCAAATATTGTTA+AGG - chr4_3:64246861-64246880 Msa0655560:CDS 25.0%
! AATTCAATAACATCATAGTG+GGG + chr4_3:64247203-64247222 None:intergenic 25.0%
! GTAATTCAATAACATCATAG+TGG + chr4_3:64247205-64247224 None:intergenic 25.0%
! AGGATTAAACACAATTTCAT+GGG + chr4_3:64247517-64247536 None:intergenic 25.0%
! TAGGATTAAACACAATTTCA+TGG + chr4_3:64247518-64247537 None:intergenic 25.0%
! TCTAGAAAAGAAACGAATAT+GGG - chr4_3:64247824-64247843 Msa0655560:CDS 25.0%
! AAAATATACATCCACATGAT+CGG - chr4_3:64247915-64247934 Msa0655560:CDS 25.0%
! AAAAGAAGACTAAAAATAGG+AGG + chr4_3:64248016-64248035 None:intergenic 25.0%
! TTGGGATTAAAATAGAAACA+GGG - chr4_3:64248134-64248153 Msa0655560:intron 25.0%
!! GTTTGACTAATAGTTTTCTT+TGG - chr4_3:64248280-64248299 Msa0655560:CDS 25.0%
!!! TAGAGAATAGTTTGATAATG+AGG + chr4_3:64248318-64248337 None:intergenic 25.0%
! ATATATTAGAATCTTGTCTC+GGG + chr4_3:64248399-64248418 None:intergenic 25.0%
TTCAACAAGATGAATTGTTC+TGG - chr4_3:64243814-64243833 Msa0655560:three_prime_UTR 30.0%
TCAACAAGATGAATTGTTCT+GGG - chr4_3:64243815-64243834 Msa0655560:three_prime_UTR 30.0%
! ATTCTTTCATCATCGTTTTG+TGG + chr4_3:64244049-64244068 None:intergenic 30.0%
! TCATTATCATCAATTTTGGG+AGG + chr4_3:64244160-64244179 None:intergenic 30.0%
CTATCTTGAAAAACAGCTTA+TGG + chr4_3:64244509-64244528 None:intergenic 30.0%
! AACATTTTCAGACCATAATC+AGG + chr4_3:64244910-64244929 None:intergenic 30.0%
GGTCAATATTAGAATACACT+TGG - chr4_3:64245024-64245043 Msa0655560:intron 30.0%
GAAAACTAAAACAAACAAGC+AGG + chr4_3:64245072-64245091 None:intergenic 30.0%
GTGCATAAAACTGTCTTTAA+TGG - chr4_3:64245202-64245221 Msa0655560:intron 30.0%
ACTACATATCACAAAATGGT+TGG - chr4_3:64245236-64245255 Msa0655560:intron 30.0%
!! TGCATTTAGTTTGGTTGTAT+TGG - chr4_3:64245274-64245293 Msa0655560:intron 30.0%
!!! TTTTTCAGGTTGTTCGTATT+TGG - chr4_3:64245330-64245349 Msa0655560:CDS 30.0%
! TCGTATTTGGAGTTTACTAA+AGG - chr4_3:64245343-64245362 Msa0655560:CDS 30.0%
! CGTATTTGGAGTTTACTAAA+GGG - chr4_3:64245344-64245363 Msa0655560:CDS 30.0%
! GTATTTGGAGTTTACTAAAG+GGG - chr4_3:64245345-64245364 Msa0655560:CDS 30.0%
GAACTTTATGAACCAAGAAA+CGG + chr4_3:64245474-64245493 None:intergenic 30.0%
CAATGACGAAACAATTTCTT+TGG + chr4_3:64245517-64245536 None:intergenic 30.0%
CAAAGAAATTGTTTCGTCAT+TGG - chr4_3:64245515-64245534 Msa0655560:intron 30.0%
TAGACAATAACTGGAATAAC+TGG - chr4_3:64245581-64245600 Msa0655560:intron 30.0%
! TTCAGATGGTATCATTTTAC+TGG - chr4_3:64245641-64245660 Msa0655560:intron 30.0%
TGACATTATAACAAGTGCTA+AGG - chr4_3:64245674-64245693 Msa0655560:intron 30.0%
! GCAGTTGAACATAAATGTTT+TGG - chr4_3:64245698-64245717 Msa0655560:intron 30.0%
!!! ATAAATGTTTTGGAGACCAA+GGG - chr4_3:64245708-64245727 Msa0655560:intron 30.0%
ATAGTAAACAATGAGTAGGA+AGG - chr4_3:64245808-64245827 Msa0655560:intron 30.0%
ACATAGTTGCAAATCTTACT+AGG + chr4_3:64246189-64246208 None:intergenic 30.0%
GTAAGATTTGCAACTATGTA+TGG - chr4_3:64246190-64246209 Msa0655560:intron 30.0%
!! ATGTTGGTAACTCTTACAAA+TGG - chr4_3:64246476-64246495 Msa0655560:intron 30.0%
!! TGTTGGTAACTCTTACAAAT+GGG - chr4_3:64246477-64246496 Msa0655560:intron 30.0%
! TGAGAAGAATTTAAAGTACC+CGG - chr4_3:64246543-64246562 Msa0655560:intron 30.0%
! TACATAGAATTTTCTGATGC+CGG + chr4_3:64246565-64246584 None:intergenic 30.0%
TCACATCAATACATCAAGAA+AGG + chr4_3:64246754-64246773 None:intergenic 30.0%
TTATAATCCAACTGAACTAC+TGG + chr4_3:64246794-64246813 None:intergenic 30.0%
GAACTCCTTAACAATATTTG+AGG + chr4_3:64246869-64246888 None:intergenic 30.0%
AAGTTTACTTGCAATCAAGA+AGG + chr4_3:64246977-64246996 None:intergenic 30.0%
GTTAATGTGATTCACTTCAT+AGG - chr4_3:64247045-64247064 Msa0655560:intron 30.0%
!!! TTTTTTTTTTCCTTCTGCAG+TGG - chr4_3:64247134-64247153 Msa0655560:intron 30.0%
TATTGTTGGATAGCTAATGA+TGG - chr4_3:64247399-64247418 Msa0655560:intron 30.0%
ATTGTTGGATAGCTAATGAT+GGG - chr4_3:64247400-64247419 Msa0655560:intron 30.0%
TCTGAAAAGCTAGAGAAATT+GGG + chr4_3:64247458-64247477 None:intergenic 30.0%
TGGTTAATGATAGTAGGATT+AGG - chr4_3:64247681-64247700 Msa0655560:intron 30.0%
! CTCTAGAAAAGAAACGAATA+TGG - chr4_3:64247823-64247842 Msa0655560:CDS 30.0%
! TATGATTCAGTTTCTGGATA+TGG - chr4_3:64247854-64247873 Msa0655560:CDS 30.0%
AATGCATCGTTATTACAAGA+GGG + chr4_3:64248047-64248066 None:intergenic 30.0%
TAATGCATCGTTATTACAAG+AGG + chr4_3:64248048-64248067 None:intergenic 30.0%
GTTGGGATTAAAATAGAAAC+AGG - chr4_3:64248133-64248152 Msa0655560:intron 30.0%
! AAATAGAAACAGGGTATTTG+AGG - chr4_3:64248143-64248162 Msa0655560:CDS 30.0%
!! GTTTGATAATGAGGAAATGA+GGG + chr4_3:64248309-64248328 None:intergenic 30.0%
!! AGTTTGATAATGAGGAAATG+AGG + chr4_3:64248310-64248329 None:intergenic 30.0%
AAGTGTTAACACTGAACAGA+AGG - chr4_3:64243656-64243675 Msa0655560:three_prime_UTR 35.0%
ACAATGGAGGAAAAGAATTC+AGG - chr4_3:64243702-64243721 Msa0655560:three_prime_UTR 35.0%
CAACAAGATGAATTGTTCTG+GGG - chr4_3:64243816-64243835 Msa0655560:three_prime_UTR 35.0%
AGTTACGTCTTGATCGAAAT+CGG + chr4_3:64243916-64243935 None:intergenic 35.0%
! TAATCGGTGTGAATGAGTTT+TGG + chr4_3:64243945-64243964 None:intergenic 35.0%
AAACAACAAGAACAACAACC+AGG - chr4_3:64244198-64244217 Msa0655560:CDS 35.0%
GATATTGGAGATAACCTTGT+AGG + chr4_3:64244323-64244342 None:intergenic 35.0%
TGTATTTGTGCTCATCTAGT+GGG - chr4_3:64244429-64244448 Msa0655560:intron 35.0%
AGATAGCTTATGCTTCTGTT+TGG - chr4_3:64244523-64244542 Msa0655560:intron 35.0%
CTTATAACAGCTTATGGACA+TGG - chr4_3:64244660-64244679 Msa0655560:intron 35.0%
GTTCTTCTAAACAATATCCC+AGG - chr4_3:64244688-64244707 Msa0655560:intron 35.0%
! AGCATTTAAGTTAGAAGCAC+TGG - chr4_3:64244853-64244872 Msa0655560:intron 35.0%
TTCCAAACAACACCTGATTA+TGG - chr4_3:64244895-64244914 Msa0655560:intron 35.0%
CTGCAGAAATTATGAACTTG+AGG - chr4_3:64245128-64245147 Msa0655560:CDS 35.0%
TGTGATATGTAGTGTATCTG+TGG + chr4_3:64245229-64245248 None:intergenic 35.0%
CATTCCATGTGCATTTAGTT+TGG - chr4_3:64245265-64245284 Msa0655560:intron 35.0%
ACAACCAAACTAAATGCACA+TGG + chr4_3:64245272-64245291 None:intergenic 35.0%
AATAACTGGACACATTCCAA+AGG - chr4_3:64245595-64245614 Msa0655560:intron 35.0%
!!! CATAAATGTTTTGGAGACCA+AGG - chr4_3:64245707-64245726 Msa0655560:intron 35.0%
TTAGTTAGGTTTAGGAAAGG+AGG - chr4_3:64245769-64245788 Msa0655560:intron 35.0%
TCTTGTGTAAAAACAGGGTA+AGG + chr4_3:64245933-64245952 None:intergenic 35.0%
!!! TTACCCTGTTTTTACACAAG+AGG - chr4_3:64245932-64245951 Msa0655560:intron 35.0%
GGGTCTATCTTACAAAAGAA+AGG - chr4_3:64246062-64246081 Msa0655560:intron 35.0%
TTGAAGTAGAGAAATGCTTC+AGG - chr4_3:64246123-64246142 Msa0655560:intron 35.0%
TATGTATGGGTCAGAAATGT+TGG - chr4_3:64246204-64246223 Msa0655560:intron 35.0%
ATGTATGGGTCAGAAATGTT+GGG - chr4_3:64246205-64246224 Msa0655560:intron 35.0%
GCAATCATGAGCATAAATGA+TGG - chr4_3:64246237-64246256 Msa0655560:intron 35.0%
TGAGCATAAATGATGGTTGT+AGG - chr4_3:64246244-64246263 Msa0655560:intron 35.0%
AAGTTAGGGTAGCTACTATA+TGG - chr4_3:64246384-64246403 Msa0655560:intron 35.0%
TTCAACCTCGCATATTATGA+AGG + chr4_3:64246450-64246469 None:intergenic 35.0%
ATAATATGCGAGGTTGAAGA+TGG - chr4_3:64246452-64246471 Msa0655560:intron 35.0%
GTAACTCTTACAAATGGGTA+GGG - chr4_3:64246482-64246501 Msa0655560:intron 35.0%
TAACTCTTACAAATGGGTAG+GGG - chr4_3:64246483-64246502 Msa0655560:intron 35.0%
! ACATAGAATTTTCTGATGCC+GGG + chr4_3:64246564-64246583 None:intergenic 35.0%
AAACCAGTAATAACGCAAAC+AGG + chr4_3:64246715-64246734 None:intergenic 35.0%
TTGATTACCAGTAGTTCAGT+TGG - chr4_3:64246784-64246803 Msa0655560:intron 35.0%
ATAGACAAAGGGAAATCTTC+CGG + chr4_3:64246836-64246855 None:intergenic 35.0%
GTACAATGGCTATAGACAAA+GGG + chr4_3:64246847-64246866 None:intergenic 35.0%
! AAAGCTTCTTTTGTAGCGTA+TGG + chr4_3:64246930-64246949 None:intergenic 35.0%
GGTTTGATCTAATGTTCCAT+AGG - chr4_3:64247155-64247174 Msa0655560:intron 35.0%
TTGATCTAATGTTCCATAGG+AGG - chr4_3:64247158-64247177 Msa0655560:intron 35.0%
CTTAAGATGACATGGTTCAT+TGG + chr4_3:64247281-64247300 None:intergenic 35.0%
TGAACCATGTCATCTTAAGA+AGG - chr4_3:64247282-64247301 Msa0655560:intron 35.0%
CTTTCCTTCTTAAGATGACA+TGG + chr4_3:64247289-64247308 None:intergenic 35.0%
!!! TTTTCTTAGTCTTGAAGTCC+AGG - chr4_3:64247368-64247387 Msa0655560:intron 35.0%
!! TTTCTTAGTCTTGAAGTCCA+GGG - chr4_3:64247369-64247388 Msa0655560:intron 35.0%
! CTCTGAAAAGCTAGAGAAAT+TGG + chr4_3:64247459-64247478 None:intergenic 35.0%
TAAACACAATTTCATGGGTG+TGG + chr4_3:64247512-64247531 None:intergenic 35.0%
AGAAAAGAAACGAATATGGG+AGG - chr4_3:64247827-64247846 Msa0655560:CDS 35.0%
GGCTTATATGATTCAGTTTC+TGG - chr4_3:64247848-64247867 Msa0655560:CDS 35.0%
!! TCGTAGAATTCCTACTTTTG+AGG - chr4_3:64247952-64247971 Msa0655560:CDS 35.0%
GAATCTTCATCCTCAAAAGT+AGG + chr4_3:64247965-64247984 None:intergenic 35.0%
GGAGGAAAAAAAAATCACCA+AGG + chr4_3:64247998-64248017 None:intergenic 35.0%
CAATGGCTTCTTTCATGATT+TGG + chr4_3:64248085-64248104 None:intergenic 35.0%
!!! TCTATTTTAATCCCAACCTG+AGG + chr4_3:64248130-64248149 None:intergenic 35.0%
! TTTTGTGGCTGTTCTTCATC+GGG + chr4_3:64244034-64244053 None:intergenic 40.0%
! GTTTTGTGGCTGTTCTTCAT+CGG + chr4_3:64244035-64244054 None:intergenic 40.0%
ATGCGAAGGAGGTAATGATT+AGG - chr4_3:64244227-64244246 Msa0655560:CDS 40.0%
GTGTATTTGTGCTCATCTAG+TGG - chr4_3:64244428-64244447 Msa0655560:intron 40.0%
GCTCTCACAAATAATCTCAC+AGG + chr4_3:64244462-64244481 None:intergenic 40.0%
ATCTACTAGCATAAGCACCT+GGG + chr4_3:64244708-64244727 None:intergenic 40.0%
TATCTACTAGCATAAGCACC+TGG + chr4_3:64244709-64244728 None:intergenic 40.0%
!! GACCATAATCAGGTGTTGTT+TGG + chr4_3:64244900-64244919 None:intergenic 40.0%
!!! TTTTGGCTCAGCCAGTAATA+AGG - chr4_3:64244941-64244960 Msa0655560:intron 40.0%
CAGCCAGTAATAAGGAAGAA+AGG - chr4_3:64244949-64244968 Msa0655560:intron 40.0%
TCGCCTTTCTTCCTTATTAC+TGG + chr4_3:64244955-64244974 None:intergenic 40.0%
AGTAATAAGGAAGAAAGGCG+AGG - chr4_3:64244954-64244973 Msa0655560:intron 40.0%
GGAGAAGAAAATGTCACAAG+AGG - chr4_3:64244975-64244994 Msa0655560:intron 40.0%
!! CTTTTAGAAGCTGCTCAAAC+AGG - chr4_3:64245003-64245022 Msa0655560:intron 40.0%
CTGAAACAAAGCCTATACCA+AGG + chr4_3:64245626-64245645 None:intergenic 40.0%
!! GGTATAGGCTTTGTTTCAGA+TGG - chr4_3:64245627-64245646 Msa0655560:intron 40.0%
ACAACTCAAGAGAAATCCCT+TGG + chr4_3:64245727-64245746 None:intergenic 40.0%
TTAGGTTTAGGAAAGGAGGA+TGG - chr4_3:64245773-64245792 Msa0655560:intron 40.0%
! AGAGTACCCACAACTAAGTA+AGG - chr4_3:64245832-64245851 Msa0655560:intron 40.0%
GAGTACCCACAACTAAGTAA+GGG - chr4_3:64245833-64245852 Msa0655560:intron 40.0%
CGTACAATACACCAAATGGT+GGG + chr4_3:64245907-64245926 None:intergenic 40.0%
CAGCCTCTTGTGTAAAAACA+GGG + chr4_3:64245938-64245957 None:intergenic 40.0%
ACAGCCTCTTGTGTAAAAAC+AGG + chr4_3:64245939-64245958 None:intergenic 40.0%
!! TTACACAAGAGGCTGTTTCT+AGG - chr4_3:64245943-64245962 Msa0655560:intron 40.0%
GTTGTTGTCATGTGACTGTA+AGG + chr4_3:64245983-64246002 None:intergenic 40.0%
ATGTCCCACAATATCCAAAC+AGG - chr4_3:64246095-64246114 Msa0655560:intron 40.0%
CTGTCCTGTTTGGATATTGT+GGG + chr4_3:64246102-64246121 None:intergenic 40.0%
ATGATGGTTGTAGGAATGAG+TGG - chr4_3:64246253-64246272 Msa0655560:intron 40.0%
TTGTAGGAATGAGTGGAGTA+TGG - chr4_3:64246260-64246279 Msa0655560:intron 40.0%
TGTAGGAATGAGTGGAGTAT+GGG - chr4_3:64246261-64246280 Msa0655560:intron 40.0%
! CATATTATGAAGGCATGTGG+TGG + chr4_3:64246440-64246459 None:intergenic 40.0%
! TCGCATATTATGAAGGCATG+TGG + chr4_3:64246443-64246462 None:intergenic 40.0%
ACATGCCTTCATAATATGCG+AGG - chr4_3:64246442-64246461 Msa0655560:intron 40.0%
GGTAACTCTTACAAATGGGT+AGG - chr4_3:64246481-64246500 Msa0655560:intron 40.0%
AACTCTTACAAATGGGTAGG+GGG - chr4_3:64246484-64246503 Msa0655560:intron 40.0%
ATAACGCAAACAGGTTGTTC+TGG + chr4_3:64246706-64246725 None:intergenic 40.0%
CAACCTGTTTGCGTTATTAC+TGG - chr4_3:64246709-64246728 Msa0655560:CDS 40.0%
CATCAAGAAAGGCTCTTACT+TGG + chr4_3:64246743-64246762 None:intergenic 40.0%
GGTACAATGGCTATAGACAA+AGG + chr4_3:64246848-64246867 None:intergenic 40.0%
AAGGAGTTCTCTCTTGATAC+AGG - chr4_3:64246880-64246899 Msa0655560:CDS 40.0%
TTAGATCAAACCACTGCAGA+AGG + chr4_3:64247147-64247166 None:intergenic 40.0%
! AACATCATAGTGGGGAAAAC+TGG + chr4_3:64247195-64247214 None:intergenic 40.0%
AAGCTAGAGAAATTGGGTGA+AGG + chr4_3:64247452-64247471 None:intergenic 40.0%
!!! TCTAGCTTTTCAGAGAGAGA+TGG - chr4_3:64247464-64247483 Msa0655560:intron 40.0%
CTGTAAGAGCTATTGCATGA+GGG - chr4_3:64247624-64247643 Msa0655560:intron 40.0%
TGTAAGAGCTATTGCATGAG+GGG - chr4_3:64247625-64247644 Msa0655560:intron 40.0%
!! AAAAGCATTCATGTGGGAGT+TGG - chr4_3:64247661-64247680 Msa0655560:intron 40.0%
! GGGAGTTGGTTAATGATAGT+AGG - chr4_3:64247675-64247694 Msa0655560:intron 40.0%
!! GGGATTATTTTGCAGCATTC+TGG - chr4_3:64247787-64247806 Msa0655560:CDS 40.0%
! GTCGATCTCTTTTTCTTGGT+TGG + chr4_3:64247884-64247903 None:intergenic 40.0%
! CGTTGTCGATCTCTTTTTCT+TGG + chr4_3:64247888-64247907 None:intergenic 40.0%
AAGATTCTGACTAACTGCCT+TGG - chr4_3:64247978-64247997 Msa0655560:CDS 40.0%
TTCATCACGATTCAAACCTC+AGG - chr4_3:64248111-64248130 Msa0655560:intron 40.0%
AGGCCTGTTTCAGTAATCTT+GGG - chr4_3:64248163-64248182 Msa0655560:CDS 40.0%
AGACCCAAGATTACTGAAAC+AGG + chr4_3:64248169-64248188 None:intergenic 40.0%
! ATCTTGTCTCGGGTATTGTA+TGG + chr4_3:64248389-64248408 None:intergenic 40.0%
GAGATCGAATCTTCTACTGC+TGG - chr4_3:64243734-64243753 Msa0655560:three_prime_UTR 45.0%
!! AGATGAATTGTTCTGGGGTC+AGG - chr4_3:64243821-64243840 Msa0655560:three_prime_UTR 45.0%
CCAAGAAGAAGCTGAAATCG+CGG - chr4_3:64243878-64243897 Msa0655560:three_prime_UTR 45.0%
ATATCCTGCGAAGACGACAT+TGG - chr4_3:64244090-64244109 Msa0655560:CDS 45.0%
TTCAGCTTGGCGAACAATGA+CGG + chr4_3:64244269-64244288 None:intergenic 45.0%
GAATGGCTTCTCTTTCAGCT+TGG + chr4_3:64244282-64244301 None:intergenic 45.0%
AGCTCTCAAAGCAACCTACA+AGG - chr4_3:64244306-64244325 Msa0655560:intron 45.0%
ACTGGACACATTCCAAAGGA+AGG - chr4_3:64245599-64245618 Msa0655560:intron 45.0%
ACATTCCAAAGGAAGGACCT+TGG - chr4_3:64245606-64245625 Msa0655560:intron 45.0%
CTATACCAAGGTCCTTCCTT+TGG + chr4_3:64245614-64245633 None:intergenic 45.0%
CAAAGGAAGGACCTTGGTAT+AGG - chr4_3:64245612-64245631 Msa0655560:intron 45.0%
GGTTGCCCTTACTTAGTTGT+GGG + chr4_3:64245841-64245860 None:intergenic 45.0%
ACAACTAAGTAAGGGCAACC+CGG - chr4_3:64245841-64245860 Msa0655560:intron 45.0%
GCGTACAATACACCAAATGG+TGG + chr4_3:64245908-64245927 None:intergenic 45.0%
GCTGCGTACAATACACCAAA+TGG + chr4_3:64245911-64245930 None:intergenic 45.0%
TCATGTGACTGTAAGGTCAC+GGG + chr4_3:64245976-64245995 None:intergenic 45.0%
GTCATGTGACTGTAAGGTCA+CGG + chr4_3:64245977-64245996 None:intergenic 45.0%
!! ACTTAGTTGTGGGTACTGAG+GGG + chr4_3:64246028-64246047 None:intergenic 45.0%
!! CACTTAGTTGTGGGTACTGA+GGG + chr4_3:64246029-64246048 None:intergenic 45.0%
! ACACTTAGTTGTGGGTACTG+AGG + chr4_3:64246030-64246049 None:intergenic 45.0%
CCTGTCCTGTTTGGATATTG+TGG + chr4_3:64246103-64246122 None:intergenic 45.0%
CCACAATATCCAAACAGGAC+AGG - chr4_3:64246100-64246119 Msa0655560:intron 45.0%
CTACTTCAACCTGTCCTGTT+TGG + chr4_3:64246112-64246131 None:intergenic 45.0%
! AAGCCTTATCCCACTAAGTG+GGG + chr4_3:64246626-64246645 None:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+GGG + chr4_3:64246627-64246646 None:intergenic 45.0%
AAGAAAGGCTCTTACTTGGC+AGG + chr4_3:64246739-64246758 None:intergenic 45.0%
GATGCTCAACTTGCGTCATT+TGG - chr4_3:64247325-64247344 Msa0655560:intron 45.0%
TCCAGGGCACATACTATTGT+TGG - chr4_3:64247385-64247404 Msa0655560:intron 45.0%
TCCAACAATAGTATGTGCCC+TGG + chr4_3:64247389-64247408 None:intergenic 45.0%
TACAGCTTGACGTGTAGAGT+TGG + chr4_3:64247609-64247628 None:intergenic 45.0%
GCTGTAAGAGCTATTGCATG+AGG - chr4_3:64247623-64247642 Msa0655560:intron 45.0%
AATTCTACGAAACCGAGCCA+AGG + chr4_3:64247942-64247961 None:intergenic 45.0%
ATCGTGATGAAGCACAGCAA+TGG + chr4_3:64248102-64248121 None:intergenic 45.0%
TCACGATTCAAACCTCAGGT+TGG - chr4_3:64248115-64248134 Msa0655560:intron 45.0%
CACGATTCAAACCTCAGGTT+GGG - chr4_3:64248116-64248135 Msa0655560:intron 45.0%
GAGGCCTGTTTCAGTAATCT+TGG - chr4_3:64248162-64248181 Msa0655560:CDS 45.0%
CAGTAATCTTGGGTCTTCTG+TGG - chr4_3:64248173-64248192 Msa0655560:CDS 45.0%
!! AATTGAATTAATTAATTAAT+CGG + chr4_3:64243961-64243980 None:intergenic 5.0%
GTGCGAGCGAGTTAGTACAA+TGG - chr4_3:64243686-64243705 Msa0655560:three_prime_UTR 50.0%
CGAGCGAGTTAGTACAATGG+AGG - chr4_3:64243689-64243708 Msa0655560:three_prime_UTR 50.0%
CCGCGATTTCAGCTTCTTCT+TGG + chr4_3:64243881-64243900 None:intergenic 50.0%
TTAGCCAATGTCGTCTTCGC+AGG + chr4_3:64244097-64244116 None:intergenic 50.0%
! GCGAACAATGACGGAAGTTC+TGG + chr4_3:64244260-64244279 None:intergenic 50.0%
!! TGCTTTGAGAGCTTCGCGAA+TGG + chr4_3:64244299-64244318 None:intergenic 50.0%
!!! GGAGCGAGTTTTAGCTAGAG+AGG - chr4_3:64245156-64245175 Msa0655560:intron 50.0%
CGCACATTCTTGAGACGTTG+TGG + chr4_3:64245392-64245411 None:intergenic 50.0%
GGGTTGCCCTTACTTAGTTG+TGG + chr4_3:64245842-64245861 None:intergenic 50.0%
CAACTTTACCAGTTGCCCCA+AGG - chr4_3:64245999-64246018 Msa0655560:intron 50.0%
GTGGGCATACTGAGATGGAT+AGG - chr4_3:64246288-64246307 Msa0655560:intron 50.0%
CGAGGTTGAAGATGGCATGT+TGG - chr4_3:64246460-64246479 Msa0655560:intron 50.0%
TTATAGCCGACCCCACTTAG+TGG - chr4_3:64246613-64246632 Msa0655560:intron 50.0%
TATAGCCGACCCCACTTAGT+GGG - chr4_3:64246614-64246633 Msa0655560:intron 50.0%
CTTATCCCACTAAGTGGGGT+CGG + chr4_3:64246622-64246641 None:intergenic 50.0%
! CCAAGCCTTATCCCACTAAG+TGG + chr4_3:64246628-64246647 None:intergenic 50.0%
CCACTTAGTGGGATAAGGCT+TGG - chr4_3:64246625-64246644 Msa0655560:intron 50.0%
! AGGTACCGTGATCCAAAGAC+TGG - chr4_3:64246900-64246919 Msa0655560:CDS 50.0%
GGTACCGTGATCCAAAGACT+GGG - chr4_3:64246901-64246920 Msa0655560:CDS 50.0%
! ATTGGGTGAAGGCACATGCA+TGG + chr4_3:64247441-64247460 None:intergenic 50.0%
ACATCCACATGATCGGTCCT+TGG - chr4_3:64247922-64247941 Msa0655560:CDS 50.0%
GGCTGTTCTTCATCGGGTTC+AGG + chr4_3:64244028-64244047 None:intergenic 55.0%
CAACCAGGACGATGATGCGA+AGG - chr4_3:64244213-64244232 Msa0655560:CDS 55.0%
! GGTACTGAGGGGTAACCTTG+GGG + chr4_3:64246017-64246036 None:intergenic 55.0%
!! GGGTACTGAGGGGTAACCTT+GGG + chr4_3:64246018-64246037 None:intergenic 55.0%
!! TGGGTACTGAGGGGTAACCT+TGG + chr4_3:64246019-64246038 None:intergenic 55.0%
TGAGTGGAGTATGGGACGAG+TGG - chr4_3:64246269-64246288 Msa0655560:intron 55.0%
GAGTGGAGTATGGGACGAGT+GGG - chr4_3:64246270-64246289 Msa0655560:intron 55.0%
GACGAGTGGGCATACTGAGA+TGG - chr4_3:64246283-64246302 Msa0655560:intron 55.0%
CGACCCCACTTAGTGGGATA+AGG - chr4_3:64246620-64246639 Msa0655560:intron 55.0%
GCAGCCCAGTCTTTGGATCA+CGG + chr4_3:64246908-64246927 None:intergenic 55.0%
GGTCTGCAGTCATCCTCCTA+TGG + chr4_3:64247174-64247193 None:intergenic 55.0%
CACATGATCGGTCCTTGGCT+CGG - chr4_3:64247927-64247946 Msa0655560:CDS 55.0%
CGTGCATCTCGAGCGACAAG+AGG - chr4_3:64243759-64243778 Msa0655560:three_prime_UTR 60.0%
CCTCCTTCGCATCATCGTCC+TGG + chr4_3:64244219-64244238 None:intergenic 60.0%
CCAGGACGATGATGCGAAGG+AGG - chr4_3:64244216-64244235 Msa0655560:CDS 60.0%
ATGCGGGAGCTTCAGTGCAC+CGG + chr4_3:64245863-64245882 None:intergenic 60.0%
ACTGAAGCTCCCGCATACGC+AGG - chr4_3:64245867-64245886 Msa0655560:intron 60.0%
CTGAAGCTCCCGCATACGCA+GGG - chr4_3:64245868-64245887 Msa0655560:intron 60.0%
TTCCTGGACCCTGCGTATGC+GGG + chr4_3:64245879-64245898 None:intergenic 60.0%
CTTCCTGGACCCTGCGTATG+CGG + chr4_3:64245880-64245899 None:intergenic 60.0%
GCATACGCAGGGTCCAGGAA+GGG - chr4_3:64245879-64245898 Msa0655560:intron 60.0%
CATACGCAGGGTCCAGGAAG+GGG - chr4_3:64245880-64245899 Msa0655560:intron 60.0%
! CAAATGGTGGGACCCCTTCC+TGG + chr4_3:64245895-64245914 None:intergenic 60.0%
CAGGAAGGGGTCCCACCATT+TGG - chr4_3:64245893-64245912 Msa0655560:intron 60.0%
AGGGGTAACCTTGGGGCAAC+TGG + chr4_3:64246010-64246029 None:intergenic 60.0%
GCGTATGGCAGCCCAGTCTT+TGG + chr4_3:64246915-64246934 None:intergenic 60.0%
CGAGCCAAGGACCGATCATG+TGG + chr4_3:64247929-64247948 None:intergenic 60.0%
TGCGGGAGCTTCAGTGCACC+GGG + chr4_3:64245862-64245881 None:intergenic 65.0%
CGCATACGCAGGGTCCAGGA+AGG - chr4_3:64245878-64245897 Msa0655560:intron 65.0%
CTCCCGCATACGCAGGGTCC+AGG - chr4_3:64245874-64245893 Msa0655560:intron 70.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 64243641 64248431 64243641 ID=Msa0655560;Name=Msa0655560
chr4_3 mRNA 64243641 64248431 64243641 ID=Msa0655560-mRNA-1;Parent=Msa0655560;Name=Msa0655560-mRNA-1;_AED=0.04;_eAED=0.04;_QI=64|0.87|0.88|1|0.87|0.77|9|360|370
chr4_3 exon 64243641 64243992 64243641 ID=Msa0655560-mRNA-1:exon:18150;Parent=Msa0655560-mRNA-1
chr4_3 exon 64244073 64244270 64244073 ID=Msa0655560-mRNA-1:exon:18149;Parent=Msa0655560-mRNA-1
chr4_3 exon 64245084 64245170 64245084 ID=Msa0655560-mRNA-1:exon:18148;Parent=Msa0655560-mRNA-1
chr4_3 exon 64245329 64245371 64245329 ID=Msa0655560-mRNA-1:exon:18147;Parent=Msa0655560-mRNA-1
chr4_3 exon 64246666 64246734 64246666 ID=Msa0655560-mRNA-1:exon:18146;Parent=Msa0655560-mRNA-1
chr4_3 exon 64246819 64246938 64246819 ID=Msa0655560-mRNA-1:exon:18145;Parent=Msa0655560-mRNA-1
chr4_3 exon 64247048 64247120 64247048 ID=Msa0655560-mRNA-1:exon:18144;Parent=Msa0655560-mRNA-1
chr4_3 exon 64247745 64248050 64247745 ID=Msa0655560-mRNA-1:exon:18143;Parent=Msa0655560-mRNA-1
chr4_3 exon 64248143 64248431 64248143 ID=Msa0655560-mRNA-1:exon:18142;Parent=Msa0655560-mRNA-1
chr4_3 five_prime_UTR 64248368 64248431 64248368 ID=Msa0655560-mRNA-1:five_prime_utr;Parent=Msa0655560-mRNA-1
chr4_3 CDS 64248143 64248367 64248143 ID=Msa0655560-mRNA-1:cds;Parent=Msa0655560-mRNA-1
chr4_3 CDS 64247745 64248050 64247745 ID=Msa0655560-mRNA-1:cds;Parent=Msa0655560-mRNA-1
chr4_3 CDS 64247048 64247120 64247048 ID=Msa0655560-mRNA-1:cds;Parent=Msa0655560-mRNA-1
chr4_3 CDS 64246819 64246938 64246819 ID=Msa0655560-mRNA-1:cds;Parent=Msa0655560-mRNA-1
chr4_3 CDS 64246666 64246734 64246666 ID=Msa0655560-mRNA-1:cds;Parent=Msa0655560-mRNA-1
chr4_3 CDS 64245329 64245371 64245329 ID=Msa0655560-mRNA-1:cds;Parent=Msa0655560-mRNA-1
chr4_3 CDS 64245084 64245170 64245084 ID=Msa0655560-mRNA-1:cds;Parent=Msa0655560-mRNA-1
chr4_3 CDS 64244081 64244270 64244081 ID=Msa0655560-mRNA-1:cds;Parent=Msa0655560-mRNA-1
chr4_3 three_prime_UTR 64244073 64244080 64244073 ID=Msa0655560-mRNA-1:three_prime_utr;Parent=Msa0655560-mRNA-1
chr4_3 three_prime_UTR 64243641 64243992 64243641 ID=Msa0655560-mRNA-1:three_prime_utr;Parent=Msa0655560-mRNA-1
Gene Sequence

>Msa0655560

ATGGAGGAAAAGAATTCAGGCGAAGAAGAGAGATCGAATCTTCTACTGCTGGATCGTGCATCTCGAGCGACAAGAGGTAAACGTCTTTCGAAGCTTCTCGACGACGAAGTTCAACAAGATGAATTGTTCTGGGGTCAGGATGCTCTCAAAGAAGAAGACGAAGACGATAACTACCAAGAAGAAGCTGAAATCGCGGACGAATTCGACTCCGATTTCGATCAAGACGAGCCTGAACCCGATGAAGAACAGCCACAAAACGATGATGAAAGAATGCATAAAAAGAAGCGATTGATATATCCTGCGAAGACGACATTGGCTAAAAAGAAGAAAAAGAAGAAAATCTTATCTAATTTGGATGATCCTCCCAAAATTGATGATAATGATGACGGAGATGATGATAAAAACAACAAGAACAACAACCAGGACGATGATGCGAAGGAGGTAATGATTAGGAAGTCTACCAGAACTTCCGTCATTGTTCGCCAAGCTGAAAGAGAAGCCATTCGCGAAGCTCTCAAAGCAACCTACAAGCCAGTAATAAGGAAGAAAGGCGAGGAGAAGAAAATGTCACAAGAGGAGATGCTTTTAGAAGCTGCTCAAACAGAAATTATGAACTTGAGGAATTTGGAGCGAGTTTTAGCTAGAGAGGAAGAAGTTAAGAGAAGAGCTATTGTGCATAAAACTGTCTTTAATGGTCCACAGATACACTACATATCACAAAATGGTTGTTCGTATTTGGAGTTTACTAAAGGGGCATCATTTCACTCAGATATTGCCACAACGTCTCAAGAATATCCAGAACAACCTGTTTGCGTTATTACTGGTTTGCCTGCCAAGTACCGTGATCCAAAGACTGGGCTGCCATACGCTACAAAAGAAGCTTTTAAAATAATTCGACAACGGTATGACCTTCTTGATTGCAACATTCTGGATGAAAGTGCAAACTCTAGAAAAGAAACGAATATGGGAGGCTTATATGATTCAGTTTCTGGATATGGTTTTCCAACCAAGAAAAAGAGATCGACAACGCGAGATAAAAATATACATCCACATGATCGGTCCTTGGCTCGGTTTCGTAGAATTCCTACTTTTGAGGATGAAGATTCTGACTAA

Protein sequence

>Msa0655560

MEEKNSGEEERSNLLLLDRASRATRGKRLSKLLDDEVQQDELFWGQDALKEEDEDDNYQEEAEIADEFDSDFDQDEPEPDEEQPQNDDERMHKKKRLIYPAKTTLAKKKKKKKILSNLDDPPKIDDNDDGDDDKNNKNNNQDDDAKEVMIRKSTRTSVIVRQAEREAIREALKATYKPVIRKKGEEKKMSQEEMLLEAAQTEIMNLRNLERVLAREEEVKRRAIVHKTVFNGPQIHYISQNGCSYLEFTKGASFHSDIATTSQEYPEQPVCVITGLPAKYRDPKTGLPYATKEAFKIIRQRYDLLDCNILDESANSRKETNMGGLYDSVSGYGFPTKKKRSTTRDKNIHPHDRSLARFRRIPTFEDEDSD*