AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0089360


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0089360 MtrunA17_Chr1g0207801 98.565 418 6 0 1 418 1 418 0.0 858
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0089360 AT1G49820.1 76.978 417 94 1 3 417 2 418 0.0 687

Find 111 sgRNAs with CRISPR-Local

Find 330 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCAAAGTGCAGTGAATTTA+TGG 0.184173 1_2:+70827952 None:intergenic
ATTCCTAGGAAACTTGATTT+TGG 0.205496 1_2:-70829076 Msa0089360:CDS
AAAGAGACACCTTATCATTT+TGG 0.222077 1_2:+70827803 None:intergenic
TTTGATTGGTATGCGTTATT+TGG 0.235748 1_2:-70830568 Msa0089360:CDS
CTGTGTTATGCAGGCATATA+AGG 0.253321 1_2:-70828018 Msa0089360:intron
TTATACTCAGAAACTTTATA+TGG 0.271029 1_2:+70829416 None:intergenic
AGAATGTTTGATTATACTTT+TGG 0.271788 1_2:+70831033 None:intergenic
CCATAAATTCACTGCACTTT+GGG 0.304944 1_2:-70827952 Msa0089360:CDS
GGAGAAATTGTTGTCGAGTT+TGG 0.308716 1_2:+70830903 None:intergenic
TTCCACTAACTAAAAGTTAG+AGG 0.311550 1_2:+70826468 None:intergenic
CAGATAAATGATGGATGTTA+AGG 0.312759 1_2:+70826909 None:intergenic
GTTAGTGGAAGTAAAGTATA+TGG 0.332090 1_2:-70826455 Msa0089360:three_prime_UTR
CATCATTAAATGTGTTGTTC+TGG 0.333827 1_2:-70826725 Msa0089360:three_prime_UTR
AAACGATGAAGACGAAATTA+AGG 0.335482 1_2:+70830848 None:intergenic
TATGCTCTTTCTTTCGTCAT+TGG 0.340213 1_2:+70830675 None:intergenic
GTTCTACCACGGAGCATAAA+CGG 0.342649 1_2:-70830428 Msa0089360:CDS
GGTCCATAAAATGCAAATTC+AGG 0.347893 1_2:+70829120 None:intergenic
CTCAGAAAAGGGTTGATTGC+TGG 0.353861 1_2:-70830528 Msa0089360:CDS
TTTCACGACAGTCTCGGATT+TGG 0.354955 1_2:-70827831 Msa0089360:CDS
CCGTGATGCTGAGGCTGTTC+GGG 0.363989 1_2:-70829369 Msa0089360:CDS
CTATAGCCGACGCTGGTAAA+CGG 0.376012 1_2:-70827065 Msa0089360:CDS
GATCGTACTATGTCTTTGAT+TGG 0.376412 1_2:-70830582 Msa0089360:CDS
GTACAGTGAATAAACTTTCT+CGG 0.379897 1_2:-70826813 Msa0089360:three_prime_UTR
TCAGGATTGTTATAGATTCC+TGG 0.385724 1_2:+70827894 None:intergenic
ACCGTGATGCTGAGGCTGTT+CGG 0.390427 1_2:-70829370 Msa0089360:CDS
TTCACTGTACATAATTTGAC+AGG 0.394864 1_2:+70826826 None:intergenic
TAGTATTATTCTAGCCTTTG+AGG 0.396801 1_2:-70831217 Msa0089360:five_prime_UTR
TATAGCCGACGCTGGTAAAC+GGG 0.401581 1_2:-70827064 Msa0089360:CDS
GCTGGTGAGGCATATCTTCC+AGG 0.401989 1_2:-70827912 Msa0089360:CDS
TGACTGGAAGTGTGAATAAC+TGG 0.406268 1_2:+70831111 None:intergenic
ACCATAAATTCACTGCACTT+TGG 0.416058 1_2:-70827953 Msa0089360:CDS
TGGTGTTGAGTATCCTTTGT+TGG 0.418687 1_2:-70830508 Msa0089360:CDS
CTGATACACAGGAGAATTGT+TGG 0.419083 1_2:-70827114 Msa0089360:intron
ATTTAATATTGTAACTTCAA+TGG 0.421723 1_2:-70826610 Msa0089360:three_prime_UTR
TAACTGGAGTTCATTGAATC+TGG 0.422881 1_2:+70831127 None:intergenic
TTCATTTAGGTTCTGTGAGA+GGG 0.429000 1_2:-70829217 Msa0089360:intron
CCACATATAATTCTCAGAAA+AGG 0.429159 1_2:-70830540 Msa0089360:CDS
CGATCAAAATGATAGACTTC+AGG 0.437577 1_2:+70830600 None:intergenic
TTCTACCACGGAGCATAAAC+GGG 0.443750 1_2:-70830427 Msa0089360:CDS
TCTCCTATGCAACGAACATA+TGG 0.446044 1_2:+70830705 None:intergenic
GCCATCTCCGACTTCTTTGA+CGG 0.448574 1_2:+70830873 None:intergenic
TGTACAAGTAGTTGAACATC+AGG 0.451446 1_2:+70827876 None:intergenic
CACATATAATTCTCAGAAAA+GGG 0.451881 1_2:-70830539 Msa0089360:CDS
TATTGTAACTTCAATGGTTG+CGG 0.463964 1_2:-70826604 Msa0089360:three_prime_UTR
CAGAACAACACATTTAATGA+TGG 0.467605 1_2:+70826726 None:intergenic
AAGCCAAAATCAAGTTTCCT+AGG 0.467754 1_2:+70829073 None:intergenic
GAAGTAAAGTATATGGCTGT+TGG 0.469690 1_2:-70826448 None:intergenic
TTAAGACAATTGCAGACACT+TGG 0.472640 1_2:-70827986 Msa0089360:CDS
AATTAGAGAACCAATGAAAA+GGG 0.474294 1_2:+70826518 None:intergenic
AGTATTATTCTAGCCTTTGA+GGG 0.474596 1_2:-70831216 Msa0089360:five_prime_UTR
GCGGGAATGTGGAGTTATGC+AGG 0.477746 1_2:-70829466 Msa0089360:CDS
TTTGATATCGGAGCATTCCT+AGG 0.479894 1_2:-70829090 Msa0089360:CDS
TACTCAATTATCAAATATGA+TGG 0.481575 1_2:-70826653 Msa0089360:three_prime_UTR
TTGCCATATGTTCGTTGCAT+AGG 0.482313 1_2:-70830708 Msa0089360:CDS
TATACTCAGAAACTTTATAT+GGG 0.482549 1_2:+70829417 None:intergenic
AAATTAGAGAACCAATGAAA+AGG 0.482746 1_2:+70826517 None:intergenic
ATTATCAAATATGATGGATC+CGG 0.483722 1_2:-70826647 Msa0089360:three_prime_UTR
ACGGGCAACCTGTGAACGGC+GGG 0.494513 1_2:-70827046 Msa0089360:CDS
TAGGTTCTGTGAGAGGGCTC+AGG 0.499778 1_2:-70829211 Msa0089360:CDS
ATCAAGTGCCCGCCGTTCAC+AGG 0.500202 1_2:+70827038 None:intergenic
AGGAAAGTGTAGTGATTGAC+TGG 0.503777 1_2:+70831095 None:intergenic
GTTCATTTAGGTTCTGTGAG+AGG 0.506829 1_2:-70829218 Msa0089360:intron
GACTTCTTTGACGGATAAGT+CGG 0.509303 1_2:+70830882 None:intergenic
TTTCTGAGAATTATATGTGG+TGG 0.510662 1_2:+70830543 None:intergenic
GTTATGCAGGCTCACTGAGC+AGG 0.511628 1_2:-70829453 Msa0089360:CDS
TCGAGTTTGGATGAAAGTGC+AGG 0.512775 1_2:+70830916 None:intergenic
CTCCATGGGAAGCTGGGAGA+TGG 0.513986 1_2:-70826785 Msa0089360:three_prime_UTR
TTTGGATGAAAGTGCAGGGA+TGG 0.516292 1_2:+70830921 None:intergenic
TAGACTTCAGGAACATGATC+AGG 0.522053 1_2:+70830612 None:intergenic
GTTAGAGGATAATAGAGAGA+AGG 0.525840 1_2:+70826483 None:intergenic
TCAATGGTTGCGGTAACTCT+CGG 0.526955 1_2:-70826594 Msa0089360:three_prime_UTR
AGAACAACACATTTAATGAT+GGG 0.530669 1_2:+70826727 None:intergenic
TACATAATAATCAATGGTTG+CGG 0.539557 1_2:-70826554 Msa0089360:three_prime_UTR
TTGGCGCTGCCAAAATGATA+AGG 0.541695 1_2:-70827812 Msa0089360:intron
TAAATCAGTAGAAGCAGTAC+CGG 0.544812 1_2:+70826628 None:intergenic
GTTTATGCTCCGTGGTAGAA+CGG 0.550540 1_2:+70830430 None:intergenic
GATTTATTTCACGACAGTCT+CGG 0.553286 1_2:-70827837 Msa0089360:CDS
TACCATCTCCCAGCTTCCCA+TGG 0.559221 1_2:+70826783 None:intergenic
TTATGCAGGCATATAAGGAA+TGG 0.565476 1_2:-70828013 Msa0089360:intron
TGTTGGTGTGGCACATGTTG+AGG 0.565977 1_2:-70827097 Msa0089360:CDS
TTCGTTGCATAGGAGAATCA+TGG 0.568476 1_2:-70830698 Msa0089360:CDS
AAGTTTCTGAGTATAATCGC+TGG 0.568636 1_2:-70829409 Msa0089360:CDS
GACAAAAGAACCGTTGGTGT+TGG 0.569843 1_2:+70830825 None:intergenic
GACTTATCCGTCAAAGAAGT+CGG 0.577212 1_2:-70830880 Msa0089360:CDS
GTCATTGGCGTTGAAAGAAG+AGG 0.581400 1_2:-70830646 Msa0089360:CDS
TCCGTCAAAGAAGTCGGAGA+TGG 0.584966 1_2:-70830874 Msa0089360:CDS
AGAAATTCGACATGATGAAG+TGG 0.586484 1_2:+70830992 None:intergenic
TCAGCATCACGGTCAAGATG+AGG 0.591643 1_2:+70829380 None:intergenic
TCATCTTGACCGTGATGCTG+AGG 0.596291 1_2:-70829378 Msa0089360:CDS
CAGCATCACGGTCAAGATGA+GGG 0.597293 1_2:+70829381 None:intergenic
GTAAACGGGCAACCTGTGAA+CGG 0.615166 1_2:-70827050 Msa0089360:CDS
TTCATCGTTTCCAACACCAA+CGG 0.620059 1_2:-70830835 Msa0089360:CDS
GGTTGCCCGTTTACCAGCGT+CGG 0.622026 1_2:+70827059 None:intergenic
AACGGGCAACCTGTGAACGG+CGG 0.625939 1_2:-70827047 Msa0089360:CDS
CCCGAACAGCCTCAGCATCA+CGG 0.629555 1_2:+70829369 None:intergenic
GAACAACACATTTAATGATG+GGG 0.629567 1_2:+70826728 None:intergenic
GCTCCGATATCAAAACCCAT+TGG 0.631526 1_2:+70829099 None:intergenic
CGAGTTTGGATGAAAGTGCA+GGG 0.636609 1_2:+70830917 None:intergenic
TCATTGGCGTTGAAAGAAGA+GGG 0.636857 1_2:-70830645 Msa0089360:CDS
TCTACACACTGGTTCTGTGA+TGG 0.638431 1_2:-70829172 Msa0089360:CDS
TCTGCTTTACCGTTCTACCA+CGG 0.645741 1_2:-70830439 Msa0089360:CDS
TTTGATGACAAAAGAACCGT+TGG 0.648397 1_2:+70830819 None:intergenic
AGGGCTCAGGCACTAATACA+CGG 0.649727 1_2:-70829198 Msa0089360:CDS
GACATGTGATCAGCCAACAA+AGG 0.649738 1_2:+70830495 None:intergenic
TCACTGTACATAATTTGACA+GGG 0.652804 1_2:+70826827 None:intergenic
AAAGTGCAGTGAATTTATGG+TGG 0.659695 1_2:+70827955 None:intergenic
CTTGAATCTATAGCCGACGC+TGG 0.665528 1_2:-70827072 Msa0089360:CDS
ACCGTCCCGTTTATGCTCCG+TGG 0.667752 1_2:+70830422 None:intergenic
ACCACGGAGCATAAACGGGA+CGG 0.670985 1_2:-70830423 Msa0089360:intron
ACACAGGAGAATTGTTGGTG+TGG 0.730427 1_2:-70827109 Msa0089360:intron
ATACACGGAGATCTACACAC+TGG 0.737182 1_2:-70829183 Msa0089360:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAATAAAACAAAAAAAC+TGG - chr1_2:70826480-70826499 Msa0089360:three_prime_UTR 10.0%
!!! CTTTTTTCTATTTTTAATAA+TGG - chr1_2:70826919-70826938 Msa0089360:three_prime_UTR 10.0%
!!! TGTTTTTTTTATAAAAAACT+CGG + chr1_2:70828099-70828118 None:intergenic 10.0%
!! ATAAAAAAAATAAAAAACAG+TGG - chr1_2:70830367-70830386 Msa0089360:intron 10.0%
!!! TTAATCTTTTCATTTGAAAA+TGG - chr1_2:70827811-70827830 Msa0089360:intron 15.0%
!! AAGAATATTAATTGTCTATA+AGG + chr1_2:70827865-70827884 None:intergenic 15.0%
!! ATGAAAATTTATGTTCATTT+AGG - chr1_2:70828443-70828462 Msa0089360:intron 15.0%
!!! TTGAAGTTTTTATTTTACTT+TGG - chr1_2:70828807-70828826 Msa0089360:intron 15.0%
!!! CTCATTATTTTTATTAAAAG+AGG + chr1_2:70829913-70829932 None:intergenic 15.0%
!!! CTCTTTTAATAAAAATAATG+AGG - chr1_2:70829911-70829930 Msa0089360:intron 15.0%
!!! GTTGTTTTAATATAAATTCA+CGG - chr1_2:70830215-70830234 Msa0089360:intron 15.0%
!! GTAATAAAAATAACTTCTAA+TGG + chr1_2:70830998-70831017 None:intergenic 15.0%
!! ATTTAATATTGTAACTTCAA+TGG - chr1_2:70831063-70831082 Msa0089360:five_prime_UTR 15.0%
!!! GTATTTTACATAATAATCAA+TGG - chr1_2:70831113-70831132 Msa0089360:five_prime_UTR 15.0%
!!! AGAATGTTTGATTATACTTT+TGG + chr1_2:70826643-70826662 None:intergenic 20.0%
!! CAAACAAATAAATATGTTAC+GGG + chr1_2:70827305-70827324 None:intergenic 20.0%
!! GCAAACAAATAAATATGTTA+CGG + chr1_2:70827306-70827325 None:intergenic 20.0%
!!! TTTTAAATTTGTCTCTGTAT+TGG - chr1_2:70827417-70827436 Msa0089360:intron 20.0%
!!! TATCTTTTGTTATAGAAAGA+GGG + chr1_2:70827548-70827567 None:intergenic 20.0%
!!! TTATCTTTTGTTATAGAAAG+AGG + chr1_2:70827549-70827568 None:intergenic 20.0%
!! TATACTCAGAAACTTTATAT+GGG + chr1_2:70828259-70828278 None:intergenic 20.0%
!! TTATACTCAGAAACTTTATA+TGG + chr1_2:70828260-70828279 None:intergenic 20.0%
!!! ATAATACTTTGATTTTAGCT+CGG + chr1_2:70828357-70828376 None:intergenic 20.0%
!!! AAGTTTTTATTTTACTTTGG+CGG - chr1_2:70828810-70828829 Msa0089360:intron 20.0%
!! CTAATATTATCTGTAAAAGA+TGG + chr1_2:70829394-70829413 None:intergenic 20.0%
!!! TTTTGAAAACAGATAAATGA+TGG + chr1_2:70830776-70830795 None:intergenic 20.0%
!! TACTCAATTATCAAATATGA+TGG - chr1_2:70831020-70831039 Msa0089360:five_prime_UTR 20.0%
!!! TGTTTTATTTTTTCCCTCAA+AGG + chr1_2:70826473-70826492 None:intergenic 25.0%
! CACATATAATTCTCAGAAAA+GGG - chr1_2:70827134-70827153 Msa0089360:intron 25.0%
! ATAAGTTGTTTATCCAAACA+GGG + chr1_2:70827504-70827523 None:intergenic 25.0%
! AATAAGTTGTTTATCCAAAC+AGG + chr1_2:70827505-70827524 None:intergenic 25.0%
! AAGACTCAAATATTTACCAA+GGG + chr1_2:70827789-70827808 None:intergenic 25.0%
! AAAGACTCAAATATTTACCA+AGG + chr1_2:70827790-70827809 None:intergenic 25.0%
!! TCTTTTCATTTGAAAATGGA+TGG - chr1_2:70827815-70827834 Msa0089360:CDS 25.0%
! ATAGTAATATATAACCCACA+TGG - chr1_2:70827891-70827910 Msa0089360:CDS 25.0%
! TAGTAATATATAACCCACAT+GGG - chr1_2:70827892-70827911 Msa0089360:CDS 25.0%
! CAAGAATAAATTAAGACCAA+TGG + chr1_2:70828165-70828184 None:intergenic 25.0%
!!! TAATGCAGTAGTTTGTTTTT+TGG - chr1_2:70828410-70828429 Msa0089360:intron 25.0%
!!! AATGCAGTAGTTTGTTTTTT+GGG - chr1_2:70828411-70828430 Msa0089360:intron 25.0%
! GAGAATAGAATGAAAAGAAT+GGG + chr1_2:70828700-70828719 None:intergenic 25.0%
! TGAGAATAGAATGAAAAGAA+TGG + chr1_2:70828701-70828720 None:intergenic 25.0%
!! GTTACTAGACATATATTTTC+TGG - chr1_2:70828725-70828744 Msa0089360:intron 25.0%
! AAAACTGTAAATAAGAACGA+AGG + chr1_2:70828943-70828962 None:intergenic 25.0%
!! TATGCATTAGATTTTTCACA+TGG + chr1_2:70829082-70829101 None:intergenic 25.0%
!! AATTTCCTATTCTTTGTTTG+TGG + chr1_2:70829107-70829126 None:intergenic 25.0%
!! CTCTAAAAAATATCATATGC+TGG + chr1_2:70829494-70829513 None:intergenic 25.0%
!!! TTTTTAGAGAATCAACATTC+TGG - chr1_2:70829505-70829524 Msa0089360:intron 25.0%
! TAACCCATAAATCATAAACA+CGG + chr1_2:70829974-70829993 None:intergenic 25.0%
! ACAATCATTAGAGAGATAAA+TGG - chr1_2:70829999-70830018 Msa0089360:intron 25.0%
! AGTTTCTATTGTCAAAAAGA+TGG - chr1_2:70830025-70830044 Msa0089360:intron 25.0%
! AGTCACATCTTAGTTTATTT+GGG - chr1_2:70830051-70830070 Msa0089360:intron 25.0%
!! ATCTTTTATGGACAAAGATT+AGG + chr1_2:70830504-70830523 None:intergenic 25.0%
! TGTGTATCAGATAATTGAAA+TGG + chr1_2:70830549-70830568 None:intergenic 25.0%
! ATTTCAATTATCTGATACAC+AGG - chr1_2:70830548-70830567 Msa0089360:CDS 25.0%
! AGAACAACACATTTAATGAT+GGG + chr1_2:70830949-70830968 None:intergenic 25.0%
!!! ATTATCAAATATGATGGATC+CGG - chr1_2:70831026-70831045 Msa0089360:five_prime_UTR 25.0%
! TACATAATAATCAATGGTTG+CGG - chr1_2:70831119-70831138 Msa0089360:five_prime_UTR 25.0%
! AATTAGAGAACCAATGAAAA+GGG + chr1_2:70831158-70831177 None:intergenic 25.0%
! AAATTAGAGAACCAATGAAA+AGG + chr1_2:70831159-70831178 None:intergenic 25.0%
! TAGTATTATTCTAGCCTTTG+AGG - chr1_2:70826456-70826475 Msa0089360:three_prime_UTR 30.0%
! AGTATTATTCTAGCCTTTGA+GGG - chr1_2:70826457-70826476 Msa0089360:three_prime_UTR 30.0%
!! TGATTATACTTTTGGAAGAG+AGG + chr1_2:70826635-70826654 None:intergenic 30.0%
AAACGATGAAGACGAAATTA+AGG + chr1_2:70826828-70826847 None:intergenic 30.0%
! TTGAAGAAGAGATGAAGTTT+TGG + chr1_2:70826890-70826909 None:intergenic 30.0%
!! AAGAGCATATTTTGAGTCAT+TGG - chr1_2:70827012-70827031 Msa0089360:CDS 30.0%
TTTGATTGGTATGCGTTATT+TGG - chr1_2:70827105-70827124 Msa0089360:CDS 30.0%
! TTTCTGAGAATTATATGTGG+TGG + chr1_2:70827133-70827152 None:intergenic 30.0%
!! CCTTTTCTGAGAATTATATG+TGG + chr1_2:70827136-70827155 None:intergenic 30.0%
CCACATATAATTCTCAGAAA+AGG - chr1_2:70827133-70827152 Msa0089360:intron 30.0%
! TGATCACATGTCTGATTTTA+TGG - chr1_2:70827189-70827208 Msa0089360:intron 30.0%
AATATGTTACGGGTATGAAA+AGG + chr1_2:70827295-70827314 None:intergenic 30.0%
!! TGATTTGCTTTGTTCTTGTT+AGG - chr1_2:70827478-70827497 Msa0089360:intron 30.0%
AGACTCAAATATTTACCAAG+GGG + chr1_2:70827788-70827807 None:intergenic 30.0%
TTTATAAAAAACTCGGCATC+CGG + chr1_2:70828092-70828111 None:intergenic 30.0%
TGGTAACATAACATGTCTTA+CGG + chr1_2:70828145-70828164 None:intergenic 30.0%
AAGACATGTTATGTTACCAT+TGG - chr1_2:70828146-70828165 Msa0089360:intron 30.0%
! GATCCTGAATTTGCATTTTA+TGG - chr1_2:70828550-70828569 Msa0089360:intron 30.0%
! ATTTGCATTTTATGGACCAA+TGG - chr1_2:70828558-70828577 Msa0089360:intron 30.0%
! TTTGCATTTTATGGACCAAT+GGG - chr1_2:70828559-70828578 Msa0089360:intron 30.0%
! ATTCCTAGGAAACTTGATTT+TGG - chr1_2:70828597-70828616 Msa0089360:intron 30.0%
CAATAAAGACATGGAAAAAG+AGG + chr1_2:70828676-70828695 None:intergenic 30.0%
! CTCTTTTTCCATGTCTTTAT+TGG - chr1_2:70828674-70828693 Msa0089360:intron 30.0%
! ACTAGACATATATTTTCTGG+TGG - chr1_2:70828728-70828747 Msa0089360:intron 30.0%
TAGATCTCTATCTCTAGTTA+TGG - chr1_2:70828776-70828795 Msa0089360:intron 30.0%
ATGATACCCTAAAGATATGT+AGG + chr1_2:70828873-70828892 None:intergenic 30.0%
TTCTCTGAATTAGGATAACA+AGG + chr1_2:70829019-70829038 None:intergenic 30.0%
TTGTTATCCTAATTCAGAGA+AGG - chr1_2:70829018-70829037 Msa0089360:intron 30.0%
ATAAGCCACAAACAAAGAAT+AGG - chr1_2:70829099-70829118 Msa0089360:CDS 30.0%
! CATGATATCGTCTTTGTTTA+TGG + chr1_2:70829205-70829224 None:intergenic 30.0%
TGTTTGATGTACAGAGTAAT+GGG + chr1_2:70829272-70829291 None:intergenic 30.0%
TGAATAGACTTGTGGAATTT+GGG - chr1_2:70829347-70829366 Msa0089360:CDS 30.0%
CTTCAATTGTTAGTAGTGTT+GGG + chr1_2:70829426-70829445 None:intergenic 30.0%
TCTTCAATTGTTAGTAGTGT+TGG + chr1_2:70829427-70829446 None:intergenic 30.0%
ACTACTAACAATTGAAGACT+TGG - chr1_2:70829429-70829448 Msa0089360:CDS 30.0%
!!! TCCTACATTGACTAGTTTTT+AGG - chr1_2:70829551-70829570 Msa0089360:intron 30.0%
TCCTAAAAACTAGTCAATGT+AGG + chr1_2:70829555-70829574 None:intergenic 30.0%
!!! TTTCAGTTTTTTCCTTGTTG+AGG - chr1_2:70829585-70829604 Msa0089360:intron 30.0%
TATAGAAACGCAAAGTTTAG+AGG + chr1_2:70829620-70829639 None:intergenic 30.0%
! AAAGAGACACCTTATCATTT+TGG + chr1_2:70829873-70829892 None:intergenic 30.0%
ATGTCCGTGTTTATGATTTA+TGG - chr1_2:70829967-70829986 Msa0089360:intron 30.0%
TGTCCGTGTTTATGATTTAT+GGG - chr1_2:70829968-70829987 Msa0089360:intron 30.0%
GAGTCACATCTTAGTTTATT+TGG - chr1_2:70830050-70830069 Msa0089360:intron 30.0%
TAGTTTATTTGGGCATTAGA+AGG - chr1_2:70830061-70830080 Msa0089360:intron 30.0%
AGTTTATTTGGGCATTAGAA+GGG - chr1_2:70830062-70830081 Msa0089360:intron 30.0%
AATTATAGTGAGAGATTACG+AGG - chr1_2:70830100-70830119 Msa0089360:intron 30.0%
! ATACATTTTTCCACAAGGTA+GGG + chr1_2:70830191-70830210 None:intergenic 30.0%
CCAGAACAAAAAATGTGTAA+TGG + chr1_2:70830396-70830415 None:intergenic 30.0%
!!! CCATTACACATTTTTTGTTC+TGG - chr1_2:70830393-70830412 Msa0089360:intron 30.0%
!! AACCTATTTATTTTTCCTGG+AGG + chr1_2:70830435-70830454 None:intergenic 30.0%
!! TGGAACCTATTTATTTTTCC+TGG + chr1_2:70830438-70830457 None:intergenic 30.0%
TCTTTGTCCATAAAAGATTG+AGG - chr1_2:70830506-70830525 Msa0089360:CDS 30.0%
!! CAGATAAATGATGGATGTTA+AGG + chr1_2:70830767-70830786 None:intergenic 30.0%
TCACTGTACATAATTTGACA+GGG + chr1_2:70830849-70830868 None:intergenic 30.0%
TTCACTGTACATAATTTGAC+AGG + chr1_2:70830850-70830869 None:intergenic 30.0%
GTACAGTGAATAAACTTTCT+CGG - chr1_2:70830860-70830879 Msa0089360:CDS 30.0%
GAACAACACATTTAATGATG+GGG + chr1_2:70830948-70830967 None:intergenic 30.0%
CAGAACAACACATTTAATGA+TGG + chr1_2:70830950-70830969 None:intergenic 30.0%
! CATCATTAAATGTGTTGTTC+TGG - chr1_2:70830948-70830967 Msa0089360:CDS 30.0%
TATTGTAACTTCAATGGTTG+CGG - chr1_2:70831069-70831088 Msa0089360:five_prime_UTR 30.0%
! TGCTAATTTTCCCTTTTCAT+TGG - chr1_2:70831145-70831164 Msa0089360:five_prime_UTR 30.0%
!! ATCCTCTAACTTTTAGTTAG+TGG - chr1_2:70831203-70831222 Msa0089360:five_prime_UTR 30.0%
TTCCACTAACTAAAAGTTAG+AGG + chr1_2:70831208-70831227 None:intergenic 30.0%
GTTAGTGGAAGTAAAGTATA+TGG - chr1_2:70831218-70831237 Msa0089360:five_prime_UTR 30.0%
TAACTGGAGTTCATTGAATC+TGG + chr1_2:70826549-70826568 None:intergenic 35.0%
!!! GCTACTGTTGTTTTACAGTT+GGG + chr1_2:70826606-70826625 None:intergenic 35.0%
AGAAATTCGACATGATGAAG+TGG + chr1_2:70826684-70826703 None:intergenic 35.0%
! TTTGATGACAAAAGAACCGT+TGG + chr1_2:70826857-70826876 None:intergenic 35.0%
TATGCTCTTTCTTTCGTCAT+TGG + chr1_2:70827001-70827020 None:intergenic 35.0%
CGATCAAAATGATAGACTTC+AGG + chr1_2:70827076-70827095 None:intergenic 35.0%
GATCGTACTATGTCTTTGAT+TGG - chr1_2:70827091-70827110 Msa0089360:CDS 35.0%
TTCAGCTCAACTGAATTTCA+GGG + chr1_2:70827390-70827409 None:intergenic 35.0%
TTTCAGCTCAACTGAATTTC+AGG + chr1_2:70827391-70827410 None:intergenic 35.0%
TGTCTCTGTATTGGAAACAT+TGG - chr1_2:70827426-70827445 Msa0089360:intron 35.0%
AATTGTAAGTACTTGCGAGA+CGG + chr1_2:70827737-70827756 None:intergenic 35.0%
GTACTTACAATTATGCCAGT+AGG - chr1_2:70827745-70827764 Msa0089360:intron 35.0%
!! GTTTTATTGAGCTTACCTAC+TGG + chr1_2:70827763-70827782 None:intergenic 35.0%
ATTGTCTATAAGGCACAAGA+AGG + chr1_2:70827855-70827874 None:intergenic 35.0%
! CTCATGGTGCAAATTTTTGT+GGG - chr1_2:70827979-70827998 Msa0089360:CDS 35.0%
!! AGCTTGCTTTGGCTTTAAAT+GGG - chr1_2:70828015-70828034 Msa0089360:intron 35.0%
TTATAAAAAACTCGGCATCC+GGG + chr1_2:70828091-70828110 None:intergenic 35.0%
AAGTTTCTGAGTATAATCGC+TGG - chr1_2:70828264-70828283 Msa0089360:intron 35.0%
! TTCATTTAGGTTCTGTGAGA+GGG - chr1_2:70828456-70828475 Msa0089360:intron 35.0%
GGTCCATAAAATGCAAATTC+AGG + chr1_2:70828556-70828575 None:intergenic 35.0%
AAGCCAAAATCAAGTTTCCT+AGG + chr1_2:70828603-70828622 None:intergenic 35.0%
!!! GATTTTGGCTTTCTTTTCTC+AGG - chr1_2:70828612-70828631 Msa0089360:intron 35.0%
AAGCAGTCCTACATATCTTT+AGG - chr1_2:70828863-70828882 Msa0089360:intron 35.0%
AGCAGTCCTACATATCTTTA+GGG - chr1_2:70828864-70828883 Msa0089360:intron 35.0%
GGATAACAAGGAACTAGTTA+TGG + chr1_2:70829007-70829026 None:intergenic 35.0%
TTGTTTATGGCATATGCCTT+GGG + chr1_2:70829192-70829211 None:intergenic 35.0%
TTTGTTTATGGCATATGCCT+TGG + chr1_2:70829193-70829212 None:intergenic 35.0%
AGAGAGAATCGTAGTATAAG+GGG + chr1_2:70829249-70829268 None:intergenic 35.0%
GAGAGAGAATCGTAGTATAA+GGG + chr1_2:70829250-70829269 None:intergenic 35.0%
GTGTTTGATGTACAGAGTAA+TGG + chr1_2:70829273-70829292 None:intergenic 35.0%
TAGAGCGGAAAAAAGTAGTT+AGG + chr1_2:70829307-70829326 None:intergenic 35.0%
GTGAATAGACTTGTGGAATT+TGG - chr1_2:70829346-70829365 Msa0089360:CDS 35.0%
GAATAGACTTGTGGAATTTG+GGG - chr1_2:70829348-70829367 Msa0089360:CDS 35.0%
ACATGACAGAGTAATTCTCA+TGG - chr1_2:70829454-70829473 Msa0089360:CDS 35.0%
AGGATAACAAAACCTCAACA+AGG + chr1_2:70829600-70829619 None:intergenic 35.0%
TTTAACACACTGTGTTATGC+AGG - chr1_2:70829646-70829665 Msa0089360:intron 35.0%
TTATGCAGGCATATAAGGAA+TGG - chr1_2:70829660-70829679 Msa0089360:intron 35.0%
TTAAGACAATTGCAGACACT+TGG - chr1_2:70829687-70829706 Msa0089360:intron 35.0%
AAAGTGCAGTGAATTTATGG+TGG + chr1_2:70829721-70829740 None:intergenic 35.0%
ACCATAAATTCACTGCACTT+TGG - chr1_2:70829720-70829739 Msa0089360:intron 35.0%
CCATAAATTCACTGCACTTT+GGG - chr1_2:70829721-70829740 Msa0089360:intron 35.0%
!! CTTTGGGATGAGCATAAAAA+TGG - chr1_2:70829737-70829756 Msa0089360:intron 35.0%
TCAGGATTGTTATAGATTCC+TGG + chr1_2:70829782-70829801 None:intergenic 35.0%
TGTACAAGTAGTTGAACATC+AGG + chr1_2:70829800-70829819 None:intergenic 35.0%
GATTTATTTCACGACAGTCT+CGG - chr1_2:70829836-70829855 Msa0089360:intron 35.0%
GTTTATTTGGGCATTAGAAG+GGG - chr1_2:70830063-70830082 Msa0089360:intron 35.0%
GAGGTCAATGATCTATCTTT+AGG - chr1_2:70830119-70830138 Msa0089360:intron 35.0%
TCAATGATCTATCTTTAGGC+TGG - chr1_2:70830123-70830142 Msa0089360:intron 35.0%
! CATACATTTTTCCACAAGGT+AGG + chr1_2:70830192-70830211 None:intergenic 35.0%
CTACCTTGTGGAAAAATGTA+TGG - chr1_2:70830190-70830209 Msa0089360:intron 35.0%
! CAACCATACATTTTTCCACA+AGG + chr1_2:70830196-70830215 None:intergenic 35.0%
ACCAAGTAATCAAGTCCAAA+GGG - chr1_2:70830263-70830282 Msa0089360:intron 35.0%
AGCCTCCAGGAAAAATAAAT+AGG - chr1_2:70830430-70830449 Msa0089360:CDS 35.0%
TATGGACAAAGATTAGGTCA+GGG + chr1_2:70830498-70830517 None:intergenic 35.0%
TTATGGACAAAGATTAGGTC+AGG + chr1_2:70830499-70830518 None:intergenic 35.0%
! CATGACACCTCAATCTTTTA+TGG + chr1_2:70830516-70830535 None:intergenic 35.0%
!!! CAGCAATTTTAGTTCTGACA+AGG - chr1_2:70830724-70830743 Msa0089360:intron 35.0%
TAAATCAGTAGAAGCAGTAC+CGG + chr1_2:70831048-70831067 None:intergenic 35.0%
GTTAGAGGATAATAGAGAGA+AGG + chr1_2:70831193-70831212 None:intergenic 35.0%
! TGACTGGAAGTGTGAATAAC+TGG + chr1_2:70826565-70826584 None:intergenic 40.0%
! AGGAAAGTGTAGTGATTGAC+TGG + chr1_2:70826581-70826600 None:intergenic 40.0%
!!! TGTTGTTTTACAGTTGGGTC+AGG + chr1_2:70826601-70826620 None:intergenic 40.0%
!!! CGCTACTGTTGTTTTACAGT+TGG + chr1_2:70826607-70826626 None:intergenic 40.0%
! ATCAGTGTTTTCTCGTTCAG+AGG + chr1_2:70826718-70826737 None:intergenic 40.0%
GGAGAAATTGTTGTCGAGTT+TGG + chr1_2:70826773-70826792 None:intergenic 40.0%
! GACTTCTTTGACGGATAAGT+CGG + chr1_2:70826794-70826813 None:intergenic 40.0%
GACTTATCCGTCAAAGAAGT+CGG - chr1_2:70826793-70826812 Msa0089360:three_prime_UTR 40.0%
TTCATCGTTTCCAACACCAA+CGG - chr1_2:70826838-70826857 Msa0089360:three_prime_UTR 40.0%
! CGGTTCTTTTGTCATCAAAC+AGG - chr1_2:70826858-70826877 Msa0089360:three_prime_UTR 40.0%
GGGTTTCATTGCATTGTTGT+AGG - chr1_2:70826940-70826959 Msa0089360:three_prime_UTR 40.0%
TTGCCATATGTTCGTTGCAT+AGG - chr1_2:70826965-70826984 Msa0089360:CDS 40.0%
TCTCCTATGCAACGAACATA+TGG + chr1_2:70826971-70826990 None:intergenic 40.0%
TTCGTTGCATAGGAGAATCA+TGG - chr1_2:70826975-70826994 Msa0089360:CDS 40.0%
! TCATTGGCGTTGAAAGAAGA+GGG - chr1_2:70827028-70827047 Msa0089360:CDS 40.0%
TAGACTTCAGGAACATGATC+AGG + chr1_2:70827064-70827083 None:intergenic 40.0%
! TGGTGTTGAGTATCCTTTGT+TGG - chr1_2:70827165-70827184 Msa0089360:intron 40.0%
CGGGTATGAAAAGGTGAAAA+GGG + chr1_2:70827286-70827305 None:intergenic 40.0%
ACGGGTATGAAAAGGTGAAA+AGG + chr1_2:70827287-70827306 None:intergenic 40.0%
AGCTCAATAAAACAACCCCT+TGG - chr1_2:70827770-70827789 Msa0089360:intron 40.0%
CCACAAAAATTTGCACCATG+AGG + chr1_2:70827981-70828000 None:intergenic 40.0%
! CCTCATGGTGCAAATTTTTG+TGG - chr1_2:70827978-70827997 Msa0089360:CDS 40.0%
!! GAGCTTGCTTTGGCTTTAAA+TGG - chr1_2:70828014-70828033 Msa0089360:intron 40.0%
! CATGCAGTTGCTGAATTTTG+CGG - chr1_2:70828188-70828207 Msa0089360:intron 40.0%
! ATGCAGTTGCTGAATTTTGC+GGG - chr1_2:70828189-70828208 Msa0089360:intron 40.0%
! GTTCATTTAGGTTCTGTGAG+AGG - chr1_2:70828455-70828474 Msa0089360:intron 40.0%
!! GGACCAATGGGTTTTGATAT+CGG - chr1_2:70828571-70828590 Msa0089360:intron 40.0%
! TTTGATATCGGAGCATTCCT+AGG - chr1_2:70828583-70828602 Msa0089360:intron 40.0%
!! TTGGCTTTCTTTTCTCAGGA+TGG - chr1_2:70828616-70828635 Msa0089360:intron 40.0%
CAAGCAAACGATAGAACAGT+AGG - chr1_2:70828649-70828668 Msa0089360:intron 40.0%
AGAATGGGCCAATAAAGACA+TGG + chr1_2:70828685-70828704 None:intergenic 40.0%
!! TACTTTGGCGGATTTGTACA+TGG - chr1_2:70828822-70828841 Msa0089360:intron 40.0%
GATTTGTACATGGAAGAAGC+TGG - chr1_2:70828832-70828851 Msa0089360:intron 40.0%
CAAGGTTCCTTCTCTGAATT+AGG + chr1_2:70829028-70829047 None:intergenic 40.0%
CTAATTCAGAGAAGGAACCT+TGG - chr1_2:70829026-70829045 Msa0089360:intron 40.0%
AGATAGCTTCTTCCATAGCT+GGG + chr1_2:70829167-70829186 None:intergenic 40.0%
AAGATAGCTTCTTCCATAGC+TGG + chr1_2:70829168-70829187 None:intergenic 40.0%
ATCGTAGTATAAGGGGTCAA+GGG + chr1_2:70829242-70829261 None:intergenic 40.0%
AATCGTAGTATAAGGGGTCA+AGG + chr1_2:70829243-70829262 None:intergenic 40.0%
GGAGAGAGAATCGTAGTATA+AGG + chr1_2:70829251-70829270 None:intergenic 40.0%
!!! ACTACTTTTTTCCGCTCTAC+TGG - chr1_2:70829308-70829327 Msa0089360:intron 40.0%
TTCCACAAGTCTATTCACAC+AGG + chr1_2:70829344-70829363 None:intergenic 40.0%
CTGTGTTATGCAGGCATATA+AGG - chr1_2:70829655-70829674 Msa0089360:intron 40.0%
CCCAAAGTGCAGTGAATTTA+TGG + chr1_2:70829724-70829743 None:intergenic 40.0%
GATGAGCATAAAAATGGTGC+TGG - chr1_2:70829743-70829762 Msa0089360:intron 40.0%
GACCAAGTAATCAAGTCCAA+AGG - chr1_2:70830262-70830281 Msa0089360:intron 40.0%
GTTATATTCACTAAGCCTCC+AGG - chr1_2:70830417-70830436 Msa0089360:intron 40.0%
CTGATACACAGGAGAATTGT+TGG - chr1_2:70830559-70830578 Msa0089360:CDS 40.0%
! ACTTTCTCGGTTTTTCTCCA+TGG - chr1_2:70830873-70830892 Msa0089360:CDS 40.0%
! CTTTCTCGGTTTTTCTCCAT+GGG - chr1_2:70830874-70830893 Msa0089360:CDS 40.0%
! TTTGGATGAAAGTGCAGGGA+TGG + chr1_2:70826755-70826774 None:intergenic 45.0%
! CGAGTTTGGATGAAAGTGCA+GGG + chr1_2:70826759-70826778 None:intergenic 45.0%
! TCGAGTTTGGATGAAAGTGC+AGG + chr1_2:70826760-70826779 None:intergenic 45.0%
GACAAAAGAACCGTTGGTGT+TGG + chr1_2:70826851-70826870 None:intergenic 45.0%
! GTCATTGGCGTTGAAAGAAG+AGG - chr1_2:70827027-70827046 Msa0089360:CDS 45.0%
! CTCAGAAAAGGGTTGATTGC+TGG - chr1_2:70827145-70827164 Msa0089360:intron 45.0%
GACATGTGATCAGCCAACAA+AGG + chr1_2:70827181-70827200 None:intergenic 45.0%
TCTGCTTTACCGTTCTACCA+CGG - chr1_2:70827234-70827253 Msa0089360:intron 45.0%
GTTTATGCTCCGTGGTAGAA+CGG + chr1_2:70827246-70827265 None:intergenic 45.0%
GTTCTACCACGGAGCATAAA+CGG - chr1_2:70827245-70827264 Msa0089360:intron 45.0%
TTCTACCACGGAGCATAAAC+GGG - chr1_2:70827246-70827265 Msa0089360:intron 45.0%
!! AACATTGGTTCCTTGACGTG+TGG - chr1_2:70827441-70827460 Msa0089360:intron 45.0%
TGTTCTTGTTAGGCCCTGTT+TGG - chr1_2:70827488-70827507 Msa0089360:intron 45.0%
TAAGTACTTGCGAGACGGTT+TGG + chr1_2:70827732-70827751 None:intergenic 45.0%
! AGTCCATACAGAGCTTGCTT+TGG - chr1_2:70828004-70828023 Msa0089360:CDS 45.0%
AAGCCAAAGCAAGCTCTGTA+TGG + chr1_2:70828010-70828029 None:intergenic 45.0%
TTTAAATGGGCCCCCACTAA+TGG - chr1_2:70828028-70828047 Msa0089360:intron 45.0%
!! GATTGATCTCCCGGATTAGT+AGG - chr1_2:70828058-70828077 Msa0089360:intron 45.0%
! TGCTGAATTTTGCGGGAATG+TGG - chr1_2:70828196-70828215 Msa0089360:intron 45.0%
ATACACGGAGATCTACACAC+TGG - chr1_2:70828490-70828509 Msa0089360:intron 45.0%
!! TCTACACACTGGTTCTGTGA+TGG - chr1_2:70828501-70828520 Msa0089360:intron 45.0%
GCTCCGATATCAAAACCCAT+TGG + chr1_2:70828577-70828596 None:intergenic 45.0%
ACTAGTTATGGTCACCATGC+AGG + chr1_2:70828995-70829014 None:intergenic 45.0%
!! GCATAAAAATGGTGCTGGTG+AGG - chr1_2:70829748-70829767 Msa0089360:intron 45.0%
TTTCACGACAGTCTCGGATT+TGG - chr1_2:70829842-70829861 Msa0089360:intron 45.0%
TTGGCGCTGCCAAAATGATA+AGG - chr1_2:70829861-70829880 Msa0089360:intron 45.0%
ACAAGGTAGGGTCGATTACA+TGG + chr1_2:70830179-70830198 None:intergenic 45.0%
ATGTAATCGACCCTACCTTG+TGG - chr1_2:70830178-70830197 Msa0089360:intron 45.0%
GCCCTTTGGACTTGATTACT+TGG + chr1_2:70830267-70830286 None:intergenic 45.0%
! CTTGACACGAACAGGTGTTT+TGG + chr1_2:70830458-70830477 None:intergenic 45.0%
ACAAAGATTAGGTCAGGGCA+CGG + chr1_2:70830493-70830512 None:intergenic 45.0%
ACACAGGAGAATTGTTGGTG+TGG - chr1_2:70830564-70830583 Msa0089360:CDS 45.0%
! GTTTTTCTCCATGGGAAGCT+GGG - chr1_2:70830882-70830901 Msa0089360:CDS 45.0%
TCAATGGTTGCGGTAACTCT+CGG - chr1_2:70831079-70831098 Msa0089360:five_prime_UTR 45.0%
!!! TTTTTTCTATTTTTAATAAT+GGG - chr1_2:70826920-70826939 Msa0089360:three_prime_UTR 5.0%
TCCGTCAAAGAAGTCGGAGA+TGG - chr1_2:70826799-70826818 Msa0089360:three_prime_UTR 50.0%
GCCATCTCCGACTTCTTTGA+CGG + chr1_2:70826803-70826822 None:intergenic 50.0%
CGATTGACAACCACACGTCA+AGG + chr1_2:70827454-70827473 None:intergenic 50.0%
!! GTGGTGTAGGCTTTAGACCT+TGG - chr1_2:70827923-70827942 Msa0089360:CDS 50.0%
CTTGAGAGGATCACACTCCA+AGG + chr1_2:70827943-70827962 None:intergenic 50.0%
CTTGGAGTGTGATCCTCTCA+AGG - chr1_2:70827941-70827960 Msa0089360:CDS 50.0%
TGTGATCCTCTCAAGGTCTC+AGG - chr1_2:70827948-70827967 Msa0089360:CDS 50.0%
TCCTCTCAAGGTCTCAGGTT+CGG - chr1_2:70827953-70827972 Msa0089360:CDS 50.0%
AATCGCACCGTCCATTAGTG+GGG + chr1_2:70828042-70828061 None:intergenic 50.0%
CAATCGCACCGTCCATTAGT+GGG + chr1_2:70828043-70828062 None:intergenic 50.0%
TCAATCGCACCGTCCATTAG+TGG + chr1_2:70828044-70828063 None:intergenic 50.0%
CAGCATCACGGTCAAGATGA+GGG + chr1_2:70828295-70828314 None:intergenic 50.0%
TCAGCATCACGGTCAAGATG+AGG + chr1_2:70828296-70828315 None:intergenic 50.0%
TCATCTTGACCGTGATGCTG+AGG - chr1_2:70828295-70828314 Msa0089360:intron 50.0%
AGGGCTCAGGCACTAATACA+CGG - chr1_2:70828475-70828494 Msa0089360:intron 50.0%
GTTCTCATGCTTTGCCTGCA+TGG - chr1_2:70828978-70828997 Msa0089360:intron 50.0%
CCAGATCAACATGCATGCCA+AGG + chr1_2:70829046-70829065 None:intergenic 50.0%
CCTTGGCATGCATGTTGATC+TGG - chr1_2:70829043-70829062 Msa0089360:CDS 50.0%
AAGAGTAGAGCTCCCAGCTA+TGG - chr1_2:70829152-70829171 Msa0089360:CDS 50.0%
GGAAGAAGCTATCTTGCCCA+AGG - chr1_2:70829173-70829192 Msa0089360:CDS 50.0%
GGCCTGTGTGAATAGACTTG+TGG - chr1_2:70829339-70829358 Msa0089360:CDS 50.0%
CTGCTCAAACAAGAGCCCTT+TGG + chr1_2:70830281-70830300 None:intergenic 50.0%
! CAAAGGGCTCTTGTTTGAGC+AGG - chr1_2:70830279-70830298 Msa0089360:intron 50.0%
ACTCTGGACTTGACACGAAC+AGG + chr1_2:70830466-70830485 None:intergenic 50.0%
TGTTGGTGTGGCACATGTTG+AGG - chr1_2:70830576-70830595 Msa0089360:CDS 50.0%
CTTGAATCTATAGCCGACGC+TGG - chr1_2:70830601-70830620 Msa0089360:CDS 50.0%
CTATAGCCGACGCTGGTAAA+CGG - chr1_2:70830608-70830627 Msa0089360:CDS 50.0%
TATAGCCGACGCTGGTAAAC+GGG - chr1_2:70830609-70830628 Msa0089360:CDS 50.0%
GTAAACGGGCAACCTGTGAA+CGG - chr1_2:70830623-70830642 Msa0089360:CDS 50.0%
! GGTTTTTCTCCATGGGAAGC+TGG - chr1_2:70830881-70830900 Msa0089360:CDS 50.0%
ACCACGGAGCATAAACGGGA+CGG - chr1_2:70827250-70827269 Msa0089360:intron 55.0%
!! ATAACCCACATGGGCTAGCC+TGG - chr1_2:70827901-70827920 Msa0089360:CDS 55.0%
! GGTCTAAAGCCTACACCACC+AGG + chr1_2:70827922-70827941 None:intergenic 55.0%
TCCGAACCTGAGACCTTGAG+AGG + chr1_2:70827957-70827976 None:intergenic 55.0%
GTCTCAGGTTCGGATCCTCA+TGG - chr1_2:70827963-70827982 Msa0089360:CDS 55.0%
AATGGGCCCCCACTAATGGA+CGG - chr1_2:70828032-70828051 Msa0089360:intron 55.0%
ATCGCACCGTCCATTAGTGG+GGG + chr1_2:70828041-70828060 None:intergenic 55.0%
!! CTCCCGGATTAGTAGGTCGT+TGG - chr1_2:70828065-70828084 Msa0089360:intron 55.0%
GGCCAACGACCTACTAATCC+GGG + chr1_2:70828070-70828089 None:intergenic 55.0%
GGGCCAACGACCTACTAATC+CGG + chr1_2:70828071-70828090 None:intergenic 55.0%
! GGATTAGTAGGTCGTTGGCC+CGG - chr1_2:70828070-70828089 Msa0089360:intron 55.0%
GCGGGAATGTGGAGTTATGC+AGG - chr1_2:70828207-70828226 Msa0089360:intron 55.0%
GTTATGCAGGCTCACTGAGC+AGG - chr1_2:70828220-70828239 Msa0089360:intron 55.0%
ACCGTGATGCTGAGGCTGTT+CGG - chr1_2:70828303-70828322 Msa0089360:intron 55.0%
TAGGTTCTGTGAGAGGGCTC+AGG - chr1_2:70828462-70828481 Msa0089360:intron 55.0%
! TCCGCTCTACTGGCTGTGTT+AGG - chr1_2:70829318-70829337 Msa0089360:intron 55.0%
GCCTAACACAGCCAGTAGAG+CGG + chr1_2:70829322-70829341 None:intergenic 55.0%
GCTGGTGAGGCATATCTTCC+AGG - chr1_2:70829761-70829780 Msa0089360:intron 55.0%
TACCATCTCCCAGCTTCCCA+TGG + chr1_2:70830893-70830912 None:intergenic 55.0%
ACCGTCCCGTTTATGCTCCG+TGG + chr1_2:70827254-70827273 None:intergenic 60.0%
! ACCACCAGGCTAGCCCATGT+GGG + chr1_2:70827908-70827927 None:intergenic 60.0%
!! ATGGGCTAGCCTGGTGGTGT+AGG - chr1_2:70827910-70827929 Msa0089360:CDS 60.0%
GGACGGTGCGATTGATCTCC+CGG - chr1_2:70828049-70828068 Msa0089360:intron 60.0%
CCCGAACAGCCTCAGCATCA+CGG + chr1_2:70828307-70828326 None:intergenic 60.0%
CCGTGATGCTGAGGCTGTTC+GGG - chr1_2:70828304-70828323 Msa0089360:intron 60.0%
GTCAGGGCACGGTGATACTC+TGG + chr1_2:70830482-70830501 None:intergenic 60.0%
GGTTGCCCGTTTACCAGCGT+CGG + chr1_2:70830617-70830636 None:intergenic 60.0%
AACGGGCAACCTGTGAACGG+CGG - chr1_2:70830626-70830645 Msa0089360:CDS 60.0%
ATCAAGTGCCCGCCGTTCAC+AGG + chr1_2:70830638-70830657 None:intergenic 60.0%
CTCCATGGGAAGCTGGGAGA+TGG - chr1_2:70830888-70830907 Msa0089360:CDS 60.0%
!! ACCCACATGGGCTAGCCTGG+TGG - chr1_2:70827904-70827923 Msa0089360:CDS 65.0%
! CACCACCAGGCTAGCCCATG+TGG + chr1_2:70827909-70827928 None:intergenic 65.0%
ACGGGCAACCTGTGAACGGC+GGG - chr1_2:70830627-70830646 Msa0089360:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 70826449 70831246 70826449 ID=Msa0089360;Name=Msa0089360
chr1_2 mRNA 70826449 70831246 70826449 ID=Msa0089360-mRNA-1;Parent=Msa0089360;Name=Msa0089360-mRNA-1;_AED=0.02;_eAED=0.02;_QI=242|1|1|1|1|1|6|511|418
chr1_2 exon 70826449 70827125 70826449 ID=Msa0089360-mRNA-1:exon:24433;Parent=Msa0089360-mRNA-1
chr1_2 exon 70827813 70828027 70827813 ID=Msa0089360-mRNA-1:exon:24432;Parent=Msa0089360-mRNA-1
chr1_2 exon 70829029 70829230 70829029 ID=Msa0089360-mRNA-1:exon:24431;Parent=Msa0089360-mRNA-1
chr1_2 exon 70829326 70829500 70829326 ID=Msa0089360-mRNA-1:exon:24430;Parent=Msa0089360-mRNA-1
chr1_2 exon 70830424 70830733 70830424 ID=Msa0089360-mRNA-1:exon:24429;Parent=Msa0089360-mRNA-1
chr1_2 exon 70830816 70831246 70830816 ID=Msa0089360-mRNA-1:exon:24428;Parent=Msa0089360-mRNA-1
chr1_2 five_prime_UTR 70831005 70831246 70831005 ID=Msa0089360-mRNA-1:five_prime_utr;Parent=Msa0089360-mRNA-1
chr1_2 CDS 70830816 70831004 70830816 ID=Msa0089360-mRNA-1:cds;Parent=Msa0089360-mRNA-1
chr1_2 CDS 70830424 70830733 70830424 ID=Msa0089360-mRNA-1:cds;Parent=Msa0089360-mRNA-1
chr1_2 CDS 70829326 70829500 70829326 ID=Msa0089360-mRNA-1:cds;Parent=Msa0089360-mRNA-1
chr1_2 CDS 70829029 70829230 70829029 ID=Msa0089360-mRNA-1:cds;Parent=Msa0089360-mRNA-1
chr1_2 CDS 70827813 70828027 70827813 ID=Msa0089360-mRNA-1:cds;Parent=Msa0089360-mRNA-1
chr1_2 CDS 70826960 70827125 70826960 ID=Msa0089360-mRNA-1:cds;Parent=Msa0089360-mRNA-1
chr1_2 three_prime_UTR 70826449 70826959 70826449 ID=Msa0089360-mRNA-1:three_prime_utr;Parent=Msa0089360-mRNA-1
Gene Sequence

>Msa0089360

ATGTCGAATTTCTCAGAGTTCAAACCTCTGAACGAGAAAACACTGATCGAGTACATAAAATCCATCCCTGCACTTTCATCCAAACTCGACAACAATTTCTCCGACTTATCCGTCAAAGAAGTCGGAGATGGCAACCTTAATTTCGTCTTCATCGTTTCCAACACCAACGGTTCTTTTGTCATCAAACAGGCTTTGCCATATGTTCGTTGCATAGGAGAATCATGGCCAATGACGAAAGAAAGAGCATATTTTGAGTCATTGGCGTTGAAAGAAGAGGGTAAATTGAGTCCTGATCATGTTCCTGAAGTCTATCATTTTGATCGTACTATGTCTTTGATTGGTATGCGTTATTTGGAGCCACCACATATAATTCTCAGAAAAGGGTTGATTGCTGGTGTTGAGTATCCTTTGTTGGCTGATCACATGTCTGATTTTATGGCTAATACACTCTTCTTTACTTCTCTGCTTTACCGTTCTACCACGGAGCATAAACGGGACGTTGCTGAATTTTGCGGGAATGTGGAGTTATGCAGGCTCACTGAGCAGGTTGTTTTCTCTGACCCATATAAAGTTTCTGAGTATAATCGCTGGACTTGCCCTCATCTTGACCGTGATGCTGAGGCTGTTCGGGAAGACAATCTACTGAAGCTTGAAGTTGCCGAGCTAAAATCAAAGTTCTGTGAGAGGGCTCAGGCACTAATACACGGAGATCTACACACTGGTTCTGTGATGGTTACTCGTGAATCAACTCAAGTTATTGATCCTGAATTTGCATTTTATGGACCAATGGGTTTTGATATCGGAGCATTCCTAGGAAACTTGATTTTGGCTTTCTTTTCTCAGGATGGACATGCTGATCAAGCAAACGATAGAACAGCATATAAGGAATGGATTCTTAAGACAATTGCAGACACTTGGAATCTTTTCCACCATAAATTCACTGCACTTTGGGATGAGCATAAAAATGGTGCTGGTGAGGCATATCTTCCAGGAATCTATAACAATCCTGATGTTCAACTACTTGTACAGAAGAAATACATGACAGATTTATTTCACGACAGTCTCGGATTTGGCGCTGCCAAAATGATAAGGAGAATTGTTGGTGTGGCACATGTTGAGGATCTTGAATCTATAGCCGACGCTGGTAAACGGGCAACCTGTGAACGGCGGGCACTTGATTTAGCTAAGATGCTTCTCAAAGAAAGAAGAAAATTTGAGAGCATTTCTGAAATTGTCTCAGCAATTCAGCAATTTTAG

Protein sequence

>Msa0089360

MSNFSEFKPLNEKTLIEYIKSIPALSSKLDNNFSDLSVKEVGDGNLNFVFIVSNTNGSFVIKQALPYVRCIGESWPMTKERAYFESLALKEEGKLSPDHVPEVYHFDRTMSLIGMRYLEPPHIILRKGLIAGVEYPLLADHMSDFMANTLFFTSLLYRSTTEHKRDVAEFCGNVELCRLTEQVVFSDPYKVSEYNRWTCPHLDRDAEAVREDNLLKLEVAELKSKFCERAQALIHGDLHTGSVMVTRESTQVIDPEFAFYGPMGFDIGAFLGNLILAFFSQDGHADQANDRTAYKEWILKTIADTWNLFHHKFTALWDEHKNGAGEAYLPGIYNNPDVQLLVQKKYMTDLFHDSLGFGAAKMIRRIVGVAHVEDLESIADAGKRATCERRALDLAKMLLKERRKFESISEIVSAIQQF*