Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0522640 | XP_003603719.2 | 95.197 | 229 | 11 | 0 | 21 | 249 | 22 | 250 | 1.18e-156 | 462 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0522640 | sp|Q8RY67|WAKLO_ARATH | 33.061 | 245 | 141 | 8 | 10 | 239 | 22 | 258 | 1.00e-31 | 125 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0522640 | G7J4M9 | 95.197 | 229 | 11 | 0 | 21 | 249 | 22 | 250 | 5.63e-157 | 462 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0027390 | Msa0522640 | 0.805732 | 1.157867e-49 | -8.615850e-47 |
| Msa0165300 | Msa0522640 | 0.802259 | 6.107755e-49 | -8.615850e-47 |
| Msa0187030 | Msa0522640 | 0.805078 | 1.588329e-49 | -8.615850e-47 |
| Msa0188050 | Msa0522640 | 0.804876 | 1.749939e-49 | -8.615850e-47 |
| Msa0196020 | Msa0522640 | -0.808169 | 3.534397e-50 | -8.615850e-47 |
| Msa0365490 | Msa0522640 | 0.807827 | 4.178612e-50 | -8.615850e-47 |
| Msa0388030 | Msa0522640 | -0.808998 | 2.350750e-50 | -8.615850e-47 |
| Msa0397460 | Msa0522640 | 0.801754 | 7.756629e-49 | -8.615850e-47 |
| Msa0445280 | Msa0522640 | 0.805626 | 1.219228e-49 | -8.615850e-47 |
| Msa0458440 | Msa0522640 | 0.802096 | 6.598533e-49 | -8.615850e-47 |
| Msa0239690 | Msa0522640 | 0.801856 | 7.389548e-49 | -8.615850e-47 |
| Msa0317740 | Msa0522640 | 0.801725 | 7.861550e-49 | -8.615850e-47 |
| Msa0522640 | Msa0626280 | 0.806728 | 7.144289e-50 | -8.615850e-47 |
| Msa0522640 | Msa0648520 | 0.833499 | 5.150724e-56 | -8.615850e-47 |
| Msa0522640 | Msa0691050 | 0.826464 | 2.674853e-54 | -8.615850e-47 |
| Msa0522640 | Msa0735160 | 0.826098 | 3.268593e-54 | -8.615850e-47 |
| Msa0522640 | Msa0756530 | 0.807279 | 5.461625e-50 | -8.615850e-47 |
| Msa0522640 | Msa0780280 | 0.807254 | 5.529858e-50 | -8.615850e-47 |
| Msa0522640 | Msa0795070 | 0.803491 | 3.398615e-49 | -8.615850e-47 |
| Msa0522640 | Msa0821800 | 0.808466 | 3.054504e-50 | -8.615850e-47 |
| Msa0522640 | Msa0939120 | 0.820289 | 7.421330e-53 | -8.615850e-47 |
| Msa0522640 | Msa1010070 | 0.801716 | 7.895473e-49 | -8.615850e-47 |
| Msa0522640 | Msa1031820 | 0.811574 | 6.540020e-51 | -8.615850e-47 |
| Msa0522640 | Msa1176270 | 0.808137 | 3.590188e-50 | -8.615850e-47 |
| Msa0522640 | Msa1352540 | -0.817288 | 3.563714e-52 | -8.615850e-47 |
| Msa0522640 | Msa1408620 | -0.812701 | 3.713322e-51 | -8.615850e-47 |
| Msa0522640 | Msa1422840 | 0.808927 | 2.434939e-50 | -8.615850e-47 |
| Msa0522640 | Msa1433220 | 0.805745 | 1.150836e-49 | -8.615850e-47 |
| Msa0522640 | Msa1466090 | 0.802272 | 6.070227e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0522640 | MtrunA17_Chr3g0141261 | 95.197 | 229 | 11 | 0 | 21 | 249 | 22 | 250 | 1.08e-160 | 462 |
| Msa0522640 | MtrunA17_Chr8g0374031 | 38.428 | 229 | 127 | 8 | 25 | 247 | 32 | 252 | 4.68e-43 | 154 |
| Msa0522640 | MtrunA17_Chr5g0403051 | 36.759 | 253 | 139 | 11 | 1 | 247 | 8 | 245 | 4.16e-41 | 149 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0522640 | AT4G00955.1 | 35.776 | 232 | 130 | 9 | 17 | 240 | 24 | 244 | 4.24e-37 | 131 |
| Msa0522640 | AT4G00955.2 | 35.776 | 232 | 130 | 9 | 17 | 240 | 24 | 244 | 4.50e-37 | 132 |
| Msa0522640 | AT2G23450.2 | 33.061 | 245 | 141 | 8 | 10 | 239 | 22 | 258 | 1.02e-32 | 125 |
| Msa0522640 | AT2G23450.1 | 33.061 | 245 | 141 | 8 | 10 | 239 | 22 | 258 | 1.02e-32 | 125 |
| Msa0522640 | AT5G66790.1 | 32.016 | 253 | 145 | 10 | 3 | 247 | 4 | 237 | 1.55e-21 | 93.6 |
Find 62 sgRNAs with CRISPR-Local
Find 134 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAAGATTAATGATAATAAA+AGG | 0.293541 | 3_4:-75936492 | None:intergenic |
| TTTCGTGAATGAGACAAAAT+TGG | 0.295358 | 3_4:+75936930 | Msa0522640:CDS |
| TTCGGATTCGGCGATTTCTT+TGG | 0.297053 | 3_4:+75937011 | Msa0522640:CDS |
| TACCCATTCGGATTCTCTTC+CGG | 0.330119 | 3_4:+75936586 | Msa0522640:CDS |
| GAGACAAAATTGGACCGAAT+TGG | 0.382849 | 3_4:+75936940 | Msa0522640:CDS |
| GACGAAGATTTCGCCGTTGA+CGG | 0.389511 | 3_4:-75936632 | None:intergenic |
| CACAAACACGCACCTACTTC+GGG | 0.390740 | 3_4:+75936754 | Msa0522640:CDS |
| TCACCGATTGATCGAAAGCC+TGG | 0.401470 | 3_4:+75937117 | Msa0522640:CDS |
| TGAAGATTTGAGAAAGAGTT+CGG | 0.406170 | 3_4:+75936993 | Msa0522640:CDS |
| GAGCTTGGGTGGTGGATTCA+TGG | 0.412291 | 3_4:+75937048 | Msa0522640:CDS |
| TTGATCGAAAGCCTGGGTTT+CGG | 0.418760 | 3_4:+75937124 | Msa0522640:CDS |
| TAAAGTATTTGCATCCAATT+CGG | 0.428447 | 3_4:-75936954 | None:intergenic |
| TTTGAGAAAGAGTTCGGATT+CGG | 0.430264 | 3_4:+75936999 | Msa0522640:CDS |
| GTTGCGGAGGCGCCGGTAGC+AGG | 0.433619 | 3_4:+75936872 | Msa0522640:CDS |
| TTTCGGTGCCAGTGTGATGA+AGG | 0.454779 | 3_4:+75937141 | Msa0522640:CDS |
| AGTTGGTGAAACGTTTCAAA+TGG | 0.461113 | 3_4:-75936724 | None:intergenic |
| GAAGTAGCTACGATTGAGCT+TGG | 0.462364 | 3_4:+75937033 | Msa0522640:CDS |
| TCACAAACACGCACCTACTT+CGG | 0.462694 | 3_4:+75936753 | Msa0522640:CDS |
| AAACCCTTCCCCTACCCATT+CGG | 0.462762 | 3_4:+75936574 | Msa0522640:CDS |
| CGCCGTTGACGGTGCAGTTG+AGG | 0.469177 | 3_4:-75936621 | None:intergenic |
| GATAATAAAAGGATTAGAAG+TGG | 0.473334 | 3_4:-75936481 | None:intergenic |
| GAAGAGAATCCGAATGGGTA+GGG | 0.474501 | 3_4:-75936583 | None:intergenic |
| TGTCTTACCTTGTTCTATAC+CGG | 0.476629 | 3_4:+75936810 | Msa0522640:CDS |
| AACCCAGGCTTTCGATCAAT+CGG | 0.488045 | 3_4:-75937120 | None:intergenic |
| CACATGATTGGTGGCACTCA+CGG | 0.493442 | 3_4:-75936543 | None:intergenic |
| CGCCTCAACTGCACCGTCAA+CGG | 0.495987 | 3_4:+75936619 | Msa0522640:CDS |
| TCTGATGGTTGCGGAGGCGC+CGG | 0.496608 | 3_4:+75936865 | Msa0522640:CDS |
| GATGAAGGGTTCGTCGGCGA+TGG | 0.498815 | 3_4:+75937156 | Msa0522640:CDS |
| AAGTGGGTGATTTGTGATCA+TGG | 0.499499 | 3_4:-75936464 | None:intergenic |
| GTTTGTGAGAACCACATGAT+TGG | 0.507340 | 3_4:-75936555 | None:intergenic |
| GTTGAGGCGAATTTCGCAAC+CGG | 0.510614 | 3_4:-75936605 | None:intergenic |
| CTACGATTGAGCTTGGGTGG+TGG | 0.511824 | 3_4:+75937040 | Msa0522640:CDS |
| TGACTAGGAAGCAGAGTCTC+CGG | 0.520911 | 3_4:-75936829 | None:intergenic |
| TTTGAGTTTACCGATTGGAC+TGG | 0.528462 | 3_4:-75936664 | None:intergenic |
| ATAATAAAAGGATTAGAAGT+GGG | 0.530014 | 3_4:-75936480 | None:intergenic |
| AAGTAGCTACGATTGAGCTT+GGG | 0.536267 | 3_4:+75937034 | Msa0522640:CDS |
| GAATCCGAATGGGTAGGGGA+AGG | 0.537804 | 3_4:-75936578 | None:intergenic |
| AATCCGAATGGGTAGGGGAA+GGG | 0.546204 | 3_4:-75936577 | None:intergenic |
| CGGAGAATTTCCAGTCCAAT+CGG | 0.547925 | 3_4:+75936654 | Msa0522640:CDS |
| CGTGTTTGTGACTGAAGAGT+TGG | 0.553318 | 3_4:-75936741 | None:intergenic |
| ACAACTCAATTTCCTGCTAC+CGG | 0.554358 | 3_4:-75936884 | None:intergenic |
| TACTGTTTGAGTTTACCGAT+TGG | 0.554620 | 3_4:-75936669 | None:intergenic |
| GAATCTGAATCTGATGGTTG+CGG | 0.557496 | 3_4:+75936856 | Msa0522640:CDS |
| TTCGGTGCCAGTGTGATGAA+GGG | 0.566847 | 3_4:+75937142 | Msa0522640:CDS |
| GATTCTGTTGCAGAACTGTA+CGG | 0.583598 | 3_4:+75936783 | Msa0522640:CDS |
| AAGAGAATCCGAATGGGTAG+GGG | 0.585744 | 3_4:-75936582 | None:intergenic |
| CACCGATTGATCGAAAGCCT+GGG | 0.586453 | 3_4:+75937118 | Msa0522640:CDS |
| GATTCAGATTCGAATTGACT+AGG | 0.589842 | 3_4:-75936844 | None:intergenic |
| AACCGGAAGAGAATCCGAAT+GGG | 0.591125 | 3_4:-75936588 | None:intergenic |
| AGAATCACGTTTCCCGAAGT+AGG | 0.594729 | 3_4:-75936766 | None:intergenic |
| CAGTGTGATGAAGGGTTCGT+CGG | 0.603505 | 3_4:+75937150 | Msa0522640:CDS |
| GGAAGAGAATCCGAATGGGT+AGG | 0.605393 | 3_4:-75936584 | None:intergenic |
| CAATTCGAATCTGAATCTGA+TGG | 0.608458 | 3_4:+75936850 | Msa0522640:CDS |
| TCACACTGGCACCGAAACCC+AGG | 0.608467 | 3_4:-75937135 | None:intergenic |
| TAGCTACGATTGAGCTTGGG+TGG | 0.610196 | 3_4:+75937037 | Msa0522640:CDS |
| CAACCGGAAGAGAATCCGAA+TGG | 0.611094 | 3_4:-75936589 | None:intergenic |
| TGTGAGAACCACATGATTGG+TGG | 0.612408 | 3_4:-75936552 | None:intergenic |
| CGACGAACCCTTCATCACAC+TGG | 0.634528 | 3_4:-75937149 | None:intergenic |
| TCTGAATCTGATGGTTGCGG+AGG | 0.636590 | 3_4:+75936859 | Msa0522640:CDS |
| CGTGAGTGCCACCAATCATG+TGG | 0.638959 | 3_4:+75936544 | Msa0522640:CDS |
| GTCAACGGCGAAATCTTCGT+CGG | 0.675764 | 3_4:+75936634 | Msa0522640:CDS |
| AGAGTCTCCGGTATAGAACA+AGG | 0.682951 | 3_4:-75936817 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAAAGATTAATGATAATAAA+AGG | - | chr3_4:75936495-75936514 | None:intergenic | 15.0% |
| !! | GAAAGATTAATGATAATAAA+AGG | - | chr3_4:75936495-75936514 | None:intergenic | 15.0% |
| !! | ATAATAAAAGGATTAGAAGT+GGG | - | chr3_4:75936483-75936502 | None:intergenic | 20.0% |
| !! | ATAATAAAAGGATTAGAAGT+GGG | - | chr3_4:75936483-75936502 | None:intergenic | 20.0% |
| ! | GATAATAAAAGGATTAGAAG+TGG | - | chr3_4:75936484-75936503 | None:intergenic | 25.0% |
| !! | TAAAGTATTTGCATCCAATT+CGG | - | chr3_4:75936957-75936976 | None:intergenic | 25.0% |
| ! | GATAATAAAAGGATTAGAAG+TGG | - | chr3_4:75936484-75936503 | None:intergenic | 25.0% |
| !! | TAAAGTATTTGCATCCAATT+CGG | - | chr3_4:75936957-75936976 | None:intergenic | 25.0% |
| ! | AATTTTGTCTCATTCACGAA+AGG | - | chr3_4:75936931-75936950 | None:intergenic | 30.0% |
| TTTCGTGAATGAGACAAAAT+TGG | + | chr3_4:75936930-75936949 | Msa0522640:CDS | 30.0% | |
| TGAAGATTTGAGAAAGAGTT+CGG | + | chr3_4:75936993-75937012 | Msa0522640:CDS | 30.0% | |
| ! | AATTTTGTCTCATTCACGAA+AGG | - | chr3_4:75936931-75936950 | None:intergenic | 30.0% |
| TTTCGTGAATGAGACAAAAT+TGG | + | chr3_4:75936930-75936949 | Msa0522640:CDS | 30.0% | |
| TGAAGATTTGAGAAAGAGTT+CGG | + | chr3_4:75936993-75937012 | Msa0522640:CDS | 30.0% | |
| ! | TACTGTTTGAGTTTACCGAT+TGG | - | chr3_4:75936672-75936691 | None:intergenic | 35.0% |
| !! | AGTTGGTGAAACGTTTCAAA+TGG | - | chr3_4:75936727-75936746 | None:intergenic | 35.0% |
| TGTCTTACCTTGTTCTATAC+CGG | + | chr3_4:75936810-75936829 | Msa0522640:CDS | 35.0% | |
| GATTCAGATTCGAATTGACT+AGG | - | chr3_4:75936847-75936866 | None:intergenic | 35.0% | |
| CAATTCGAATCTGAATCTGA+TGG | + | chr3_4:75936850-75936869 | Msa0522640:CDS | 35.0% | |
| TTTGAGAAAGAGTTCGGATT+CGG | + | chr3_4:75936999-75937018 | Msa0522640:CDS | 35.0% | |
| ! | TACTGTTTGAGTTTACCGAT+TGG | - | chr3_4:75936672-75936691 | None:intergenic | 35.0% |
| !! | AGTTGGTGAAACGTTTCAAA+TGG | - | chr3_4:75936727-75936746 | None:intergenic | 35.0% |
| TGTCTTACCTTGTTCTATAC+CGG | + | chr3_4:75936810-75936829 | Msa0522640:CDS | 35.0% | |
| GATTCAGATTCGAATTGACT+AGG | - | chr3_4:75936847-75936866 | None:intergenic | 35.0% | |
| CAATTCGAATCTGAATCTGA+TGG | + | chr3_4:75936850-75936869 | Msa0522640:CDS | 35.0% | |
| TTTGAGAAAGAGTTCGGATT+CGG | + | chr3_4:75936999-75937018 | Msa0522640:CDS | 35.0% | |
| GTTTGTGAGAACCACATGAT+TGG | - | chr3_4:75936558-75936577 | None:intergenic | 40.0% | |
| ! | TTTGAGTTTACCGATTGGAC+TGG | - | chr3_4:75936667-75936686 | None:intergenic | 40.0% |
| GATTCTGTTGCAGAACTGTA+CGG | + | chr3_4:75936783-75936802 | Msa0522640:CDS | 40.0% | |
| GAATCTGAATCTGATGGTTG+CGG | + | chr3_4:75936856-75936875 | Msa0522640:CDS | 40.0% | |
| ACAACTCAATTTCCTGCTAC+CGG | - | chr3_4:75936887-75936906 | None:intergenic | 40.0% | |
| GAGACAAAATTGGACCGAAT+TGG | + | chr3_4:75936940-75936959 | Msa0522640:CDS | 40.0% | |
| AAGTAGCTACGATTGAGCTT+GGG | + | chr3_4:75937034-75937053 | Msa0522640:CDS | 40.0% | |
| GTTTGTGAGAACCACATGAT+TGG | - | chr3_4:75936558-75936577 | None:intergenic | 40.0% | |
| ! | TTTGAGTTTACCGATTGGAC+TGG | - | chr3_4:75936667-75936686 | None:intergenic | 40.0% |
| GATTCTGTTGCAGAACTGTA+CGG | + | chr3_4:75936783-75936802 | Msa0522640:CDS | 40.0% | |
| GAATCTGAATCTGATGGTTG+CGG | + | chr3_4:75936856-75936875 | Msa0522640:CDS | 40.0% | |
| ACAACTCAATTTCCTGCTAC+CGG | - | chr3_4:75936887-75936906 | None:intergenic | 40.0% | |
| GAGACAAAATTGGACCGAAT+TGG | + | chr3_4:75936940-75936959 | Msa0522640:CDS | 40.0% | |
| AAGTAGCTACGATTGAGCTT+GGG | + | chr3_4:75937034-75937053 | Msa0522640:CDS | 40.0% | |
| TGTGAGAACCACATGATTGG+TGG | - | chr3_4:75936555-75936574 | None:intergenic | 45.0% | |
| AAGAGAATCCGAATGGGTAG+GGG | - | chr3_4:75936585-75936604 | None:intergenic | 45.0% | |
| GAAGAGAATCCGAATGGGTA+GGG | - | chr3_4:75936586-75936605 | None:intergenic | 45.0% | |
| TACCCATTCGGATTCTCTTC+CGG | + | chr3_4:75936586-75936605 | Msa0522640:CDS | 45.0% | |
| AACCGGAAGAGAATCCGAAT+GGG | - | chr3_4:75936591-75936610 | None:intergenic | 45.0% | |
| CGGAGAATTTCCAGTCCAAT+CGG | + | chr3_4:75936654-75936673 | Msa0522640:CDS | 45.0% | |
| CGTGTTTGTGACTGAAGAGT+TGG | - | chr3_4:75936744-75936763 | None:intergenic | 45.0% | |
| TCACAAACACGCACCTACTT+CGG | + | chr3_4:75936753-75936772 | Msa0522640:CDS | 45.0% | |
| AGAATCACGTTTCCCGAAGT+AGG | - | chr3_4:75936769-75936788 | None:intergenic | 45.0% | |
| AGAGTCTCCGGTATAGAACA+AGG | - | chr3_4:75936820-75936839 | None:intergenic | 45.0% | |
| TTCGGATTCGGCGATTTCTT+TGG | + | chr3_4:75937011-75937030 | Msa0522640:CDS | 45.0% | |
| GAAGTAGCTACGATTGAGCT+TGG | + | chr3_4:75937033-75937052 | Msa0522640:CDS | 45.0% | |
| AACCCAGGCTTTCGATCAAT+CGG | - | chr3_4:75937123-75937142 | None:intergenic | 45.0% | |
| TTGATCGAAAGCCTGGGTTT+CGG | + | chr3_4:75937124-75937143 | Msa0522640:CDS | 45.0% | |
| !!! | GATGGTTTTTTGGCTGGAAC+TGG | + | chr3_4:75937174-75937193 | Msa0522640:CDS | 45.0% |
| TGTGAGAACCACATGATTGG+TGG | - | chr3_4:75936555-75936574 | None:intergenic | 45.0% | |
| AAGAGAATCCGAATGGGTAG+GGG | - | chr3_4:75936585-75936604 | None:intergenic | 45.0% | |
| GAAGAGAATCCGAATGGGTA+GGG | - | chr3_4:75936586-75936605 | None:intergenic | 45.0% | |
| TACCCATTCGGATTCTCTTC+CGG | + | chr3_4:75936586-75936605 | Msa0522640:CDS | 45.0% | |
| AACCGGAAGAGAATCCGAAT+GGG | - | chr3_4:75936591-75936610 | None:intergenic | 45.0% | |
| CGGAGAATTTCCAGTCCAAT+CGG | + | chr3_4:75936654-75936673 | Msa0522640:CDS | 45.0% | |
| CGTGTTTGTGACTGAAGAGT+TGG | - | chr3_4:75936744-75936763 | None:intergenic | 45.0% | |
| TCACAAACACGCACCTACTT+CGG | + | chr3_4:75936753-75936772 | Msa0522640:CDS | 45.0% | |
| AGAATCACGTTTCCCGAAGT+AGG | - | chr3_4:75936769-75936788 | None:intergenic | 45.0% | |
| AGAGTCTCCGGTATAGAACA+AGG | - | chr3_4:75936820-75936839 | None:intergenic | 45.0% | |
| TTCGGATTCGGCGATTTCTT+TGG | + | chr3_4:75937011-75937030 | Msa0522640:CDS | 45.0% | |
| GAAGTAGCTACGATTGAGCT+TGG | + | chr3_4:75937033-75937052 | Msa0522640:CDS | 45.0% | |
| AACCCAGGCTTTCGATCAAT+CGG | - | chr3_4:75937123-75937142 | None:intergenic | 45.0% | |
| TTGATCGAAAGCCTGGGTTT+CGG | + | chr3_4:75937124-75937143 | Msa0522640:CDS | 45.0% | |
| !!! | GATGGTTTTTTGGCTGGAAC+TGG | + | chr3_4:75937174-75937193 | Msa0522640:CDS | 45.0% |
| ! | CACATGATTGGTGGCACTCA+CGG | - | chr3_4:75936546-75936565 | None:intergenic | 50.0% |
| AAACCCTTCCCCTACCCATT+CGG | + | chr3_4:75936574-75936593 | Msa0522640:CDS | 50.0% | |
| AATCCGAATGGGTAGGGGAA+GGG | - | chr3_4:75936580-75936599 | None:intergenic | 50.0% | |
| GGAAGAGAATCCGAATGGGT+AGG | - | chr3_4:75936587-75936606 | None:intergenic | 50.0% | |
| CAACCGGAAGAGAATCCGAA+TGG | - | chr3_4:75936592-75936611 | None:intergenic | 50.0% | |
| GTTGAGGCGAATTTCGCAAC+CGG | - | chr3_4:75936608-75936627 | None:intergenic | 50.0% | |
| GACGAAGATTTCGCCGTTGA+CGG | - | chr3_4:75936635-75936654 | None:intergenic | 50.0% | |
| GTCAACGGCGAAATCTTCGT+CGG | + | chr3_4:75936634-75936653 | Msa0522640:CDS | 50.0% | |
| CACAAACACGCACCTACTTC+GGG | + | chr3_4:75936754-75936773 | Msa0522640:CDS | 50.0% | |
| TGACTAGGAAGCAGAGTCTC+CGG | - | chr3_4:75936832-75936851 | None:intergenic | 50.0% | |
| TCTGAATCTGATGGTTGCGG+AGG | + | chr3_4:75936859-75936878 | Msa0522640:CDS | 50.0% | |
| TAGCTACGATTGAGCTTGGG+TGG | + | chr3_4:75937037-75937056 | Msa0522640:CDS | 50.0% | |
| ! | TCACCGATTGATCGAAAGCC+TGG | + | chr3_4:75937117-75937136 | Msa0522640:CDS | 50.0% |
| ! | CACCGATTGATCGAAAGCCT+GGG | + | chr3_4:75937118-75937137 | Msa0522640:CDS | 50.0% |
| !! | TTTCGGTGCCAGTGTGATGA+AGG | + | chr3_4:75937141-75937160 | Msa0522640:CDS | 50.0% |
| !! | TTCGGTGCCAGTGTGATGAA+GGG | + | chr3_4:75937142-75937161 | Msa0522640:CDS | 50.0% |
| CAGTGTGATGAAGGGTTCGT+CGG | + | chr3_4:75937150-75937169 | Msa0522640:CDS | 50.0% | |
| !!! | GTTCGTCGGCGATGGTTTTT+TGG | + | chr3_4:75937164-75937183 | Msa0522640:CDS | 50.0% |
| ! | CACATGATTGGTGGCACTCA+CGG | - | chr3_4:75936546-75936565 | None:intergenic | 50.0% |
| AAACCCTTCCCCTACCCATT+CGG | + | chr3_4:75936574-75936593 | Msa0522640:CDS | 50.0% | |
| AATCCGAATGGGTAGGGGAA+GGG | - | chr3_4:75936580-75936599 | None:intergenic | 50.0% | |
| GGAAGAGAATCCGAATGGGT+AGG | - | chr3_4:75936587-75936606 | None:intergenic | 50.0% | |
| CAACCGGAAGAGAATCCGAA+TGG | - | chr3_4:75936592-75936611 | None:intergenic | 50.0% | |
| GTTGAGGCGAATTTCGCAAC+CGG | - | chr3_4:75936608-75936627 | None:intergenic | 50.0% | |
| GACGAAGATTTCGCCGTTGA+CGG | - | chr3_4:75936635-75936654 | None:intergenic | 50.0% | |
| GTCAACGGCGAAATCTTCGT+CGG | + | chr3_4:75936634-75936653 | Msa0522640:CDS | 50.0% | |
| CACAAACACGCACCTACTTC+GGG | + | chr3_4:75936754-75936773 | Msa0522640:CDS | 50.0% | |
| TGACTAGGAAGCAGAGTCTC+CGG | - | chr3_4:75936832-75936851 | None:intergenic | 50.0% | |
| TCTGAATCTGATGGTTGCGG+AGG | + | chr3_4:75936859-75936878 | Msa0522640:CDS | 50.0% | |
| TAGCTACGATTGAGCTTGGG+TGG | + | chr3_4:75937037-75937056 | Msa0522640:CDS | 50.0% | |
| ! | TCACCGATTGATCGAAAGCC+TGG | + | chr3_4:75937117-75937136 | Msa0522640:CDS | 50.0% |
| ! | CACCGATTGATCGAAAGCCT+GGG | + | chr3_4:75937118-75937137 | Msa0522640:CDS | 50.0% |
| !! | TTTCGGTGCCAGTGTGATGA+AGG | + | chr3_4:75937141-75937160 | Msa0522640:CDS | 50.0% |
| !! | TTCGGTGCCAGTGTGATGAA+GGG | + | chr3_4:75937142-75937161 | Msa0522640:CDS | 50.0% |
| CAGTGTGATGAAGGGTTCGT+CGG | + | chr3_4:75937150-75937169 | Msa0522640:CDS | 50.0% | |
| !!! | GTTCGTCGGCGATGGTTTTT+TGG | + | chr3_4:75937164-75937183 | Msa0522640:CDS | 50.0% |
| CGTGAGTGCCACCAATCATG+TGG | + | chr3_4:75936544-75936563 | Msa0522640:CDS | 55.0% | |
| GAATCCGAATGGGTAGGGGA+AGG | - | chr3_4:75936581-75936600 | None:intergenic | 55.0% | |
| CTACGATTGAGCTTGGGTGG+TGG | + | chr3_4:75937040-75937059 | Msa0522640:CDS | 55.0% | |
| !! | GAGCTTGGGTGGTGGATTCA+TGG | + | chr3_4:75937048-75937067 | Msa0522640:CDS | 55.0% |
| CGACGAACCCTTCATCACAC+TGG | - | chr3_4:75937152-75937171 | None:intergenic | 55.0% | |
| !!! | GTCGGCGATGGTTTTTTGGC+TGG | + | chr3_4:75937168-75937187 | Msa0522640:CDS | 55.0% |
| !! | TTTTGGCTGGAACTGGCTGC+CGG | + | chr3_4:75937181-75937200 | Msa0522640:CDS | 55.0% |
| GGAACTGGCTGCCGGAAAAA+AGG | + | chr3_4:75937189-75937208 | Msa0522640:CDS | 55.0% | |
| CGTGAGTGCCACCAATCATG+TGG | + | chr3_4:75936544-75936563 | Msa0522640:CDS | 55.0% | |
| GAATCCGAATGGGTAGGGGA+AGG | - | chr3_4:75936581-75936600 | None:intergenic | 55.0% | |
| CTACGATTGAGCTTGGGTGG+TGG | + | chr3_4:75937040-75937059 | Msa0522640:CDS | 55.0% | |
| !! | GAGCTTGGGTGGTGGATTCA+TGG | + | chr3_4:75937048-75937067 | Msa0522640:CDS | 55.0% |
| CGACGAACCCTTCATCACAC+TGG | - | chr3_4:75937152-75937171 | None:intergenic | 55.0% | |
| !!! | GTCGGCGATGGTTTTTTGGC+TGG | + | chr3_4:75937168-75937187 | Msa0522640:CDS | 55.0% |
| !! | TTTTGGCTGGAACTGGCTGC+CGG | + | chr3_4:75937181-75937200 | Msa0522640:CDS | 55.0% |
| GGAACTGGCTGCCGGAAAAA+AGG | + | chr3_4:75937189-75937208 | Msa0522640:CDS | 55.0% | |
| CGCCTCAACTGCACCGTCAA+CGG | + | chr3_4:75936619-75936638 | Msa0522640:CDS | 60.0% | |
| ! | TCACACTGGCACCGAAACCC+AGG | - | chr3_4:75937138-75937157 | None:intergenic | 60.0% |
| GATGAAGGGTTCGTCGGCGA+TGG | + | chr3_4:75937156-75937175 | Msa0522640:CDS | 60.0% | |
| CGCCTCAACTGCACCGTCAA+CGG | + | chr3_4:75936619-75936638 | Msa0522640:CDS | 60.0% | |
| ! | TCACACTGGCACCGAAACCC+AGG | - | chr3_4:75937138-75937157 | None:intergenic | 60.0% |
| GATGAAGGGTTCGTCGGCGA+TGG | + | chr3_4:75937156-75937175 | Msa0522640:CDS | 60.0% | |
| CGCCGTTGACGGTGCAGTTG+AGG | - | chr3_4:75936624-75936643 | None:intergenic | 65.0% | |
| ! | TCTGATGGTTGCGGAGGCGC+CGG | + | chr3_4:75936865-75936884 | Msa0522640:CDS | 65.0% |
| CGCCGTTGACGGTGCAGTTG+AGG | - | chr3_4:75936624-75936643 | None:intergenic | 65.0% | |
| ! | TCTGATGGTTGCGGAGGCGC+CGG | + | chr3_4:75936865-75936884 | Msa0522640:CDS | 65.0% |
| !! | GTTGCGGAGGCGCCGGTAGC+AGG | + | chr3_4:75936872-75936891 | Msa0522640:CDS | 75.0% |
| !! | GTTGCGGAGGCGCCGGTAGC+AGG | + | chr3_4:75936872-75936891 | Msa0522640:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 75936466 | 75937215 | 75936466 | ID=Msa0522640;Name=Msa0522640 |
| chr3_4 | mRNA | 75936466 | 75937215 | 75936466 | ID=Msa0522640-mRNA-1;Parent=Msa0522640;Name=Msa0522640-mRNA-1;_AED=0.40;_eAED=0.40;_QI=0|-1|0|1|-1|1|1|0|249 |
| chr3_4 | exon | 75936466 | 75937215 | 75936466 | ID=Msa0522640-mRNA-1:exon:21824;Parent=Msa0522640-mRNA-1 |
| chr3_4 | CDS | 75936466 | 75937215 | 75936466 | ID=Msa0522640-mRNA-1:cds;Parent=Msa0522640-mRNA-1 |
| Gene Sequence |
| Protein sequence |
