Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0735160 | XP_003615222.1 | 94.845 | 194 | 3 | 2 | 1 | 193 | 1 | 188 | 2.43e-127 | 366 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0735160 | G7KBE5 | 94.845 | 194 | 3 | 2 | 1 | 193 | 1 | 188 | 1.16e-127 | 366 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003560 | Msa0735160 | 0.800675 | 1.289575e-48 | -8.615850e-47 |
| Msa0027390 | Msa0735160 | 0.826251 | 3.005808e-54 | -8.615850e-47 |
| Msa0042550 | Msa0735160 | 0.827498 | 1.513213e-54 | -8.615850e-47 |
| Msa0043730 | Msa0735160 | 0.822867 | 1.882811e-53 | -8.615850e-47 |
| Msa0048000 | Msa0735160 | 0.802862 | 4.586218e-49 | -8.615850e-47 |
| Msa0055070 | Msa0735160 | 0.805167 | 1.521300e-49 | -8.615850e-47 |
| Msa0076670 | Msa0735160 | 0.804911 | 1.720646e-49 | -8.615850e-47 |
| Msa0077450 | Msa0735160 | 0.813004 | 3.188007e-51 | -8.615850e-47 |
| Msa0078610 | Msa0735160 | 0.828538 | 8.503664e-55 | -8.615850e-47 |
| Msa0085720 | Msa0735160 | 0.807907 | 4.018594e-50 | -8.615850e-47 |
| Msa0101020 | Msa0735160 | 0.804808 | 1.808522e-49 | -8.615850e-47 |
| Msa0613460 | Msa0735160 | 0.803185 | 3.932257e-49 | -8.615850e-47 |
| Msa0624120 | Msa0735160 | 0.834776 | 2.464221e-56 | -8.615850e-47 |
| Msa0626280 | Msa0735160 | 0.800269 | 1.560096e-48 | -8.615850e-47 |
| Msa0626990 | Msa0735160 | 0.830574 | 2.720510e-55 | -8.615850e-47 |
| Msa0627350 | Msa0735160 | 0.834811 | 2.415808e-56 | -8.615850e-47 |
| Msa0629630 | Msa0735160 | 0.801242 | 9.877242e-49 | -8.615850e-47 |
| Msa0648520 | Msa0735160 | 0.824857 | 6.430259e-54 | -8.615850e-47 |
| Msa0654010 | Msa0735160 | 0.831611 | 1.513299e-55 | -8.615850e-47 |
| Msa0658570 | Msa0735160 | 0.818099 | 2.338626e-52 | -8.615850e-47 |
| Msa0677080 | Msa0735160 | 0.823765 | 1.161340e-53 | -8.615850e-47 |
| Msa0679550 | Msa0735160 | 0.825191 | 5.362866e-54 | -8.615850e-47 |
| Msa0691050 | Msa0735160 | 0.815104 | 1.096844e-51 | -8.615850e-47 |
| Msa0693380 | Msa0735160 | 0.817477 | 3.232393e-52 | -8.615850e-47 |
| Msa0696410 | Msa0735160 | 0.828275 | 9.843405e-55 | -8.615850e-47 |
| Msa0713240 | Msa0735160 | 0.816231 | 6.151071e-52 | -8.615850e-47 |
| Msa0714960 | Msa0735160 | 0.820596 | 6.309931e-53 | -8.615850e-47 |
| Msa0715110 | Msa0735160 | 0.836483 | 9.113389e-57 | -8.615850e-47 |
| Msa0715140 | Msa0735160 | 0.805086 | 1.582192e-49 | -8.615850e-47 |
| Msa0715150 | Msa0735160 | 0.806531 | 7.863392e-50 | -8.615850e-47 |
| Msa0715410 | Msa0735160 | 0.822440 | 2.365819e-53 | -8.615850e-47 |
| Msa0724950 | Msa0735160 | 0.819720 | 1.001231e-52 | -8.615850e-47 |
| Msa0731180 | Msa0735160 | 0.800776 | 1.229849e-48 | -8.615850e-47 |
| Msa0735160 | Msa0755070 | 0.825853 | 3.737148e-54 | -8.615850e-47 |
| Msa0735160 | Msa0756530 | 0.811444 | 6.980296e-51 | -8.615850e-47 |
| Msa0735160 | Msa0757050 | 0.814513 | 1.482861e-51 | -8.615850e-47 |
| Msa0735160 | Msa0763080 | 0.809644 | 1.708919e-50 | -8.615850e-47 |
| Msa0735160 | Msa0773310 | 0.882683 | 8.477976e-71 | -8.615850e-47 |
| Msa0735160 | Msa0780280 | 0.811302 | 7.492117e-51 | -8.615850e-47 |
| Msa0735160 | Msa0798030 | 0.822438 | 2.369131e-53 | -8.615850e-47 |
| Msa0735160 | Msa0798070 | 0.800461 | 1.425423e-48 | -8.615850e-47 |
| Msa0735160 | Msa0800770 | 0.800936 | 1.140843e-48 | -8.615850e-47 |
| Msa0735160 | Msa0810760 | 0.893055 | 8.970363e-75 | -8.615850e-47 |
| Msa0735160 | Msa0818110 | 0.801257 | 9.805571e-49 | -8.615850e-47 |
| Msa0735160 | Msa0821800 | 0.823135 | 1.630261e-53 | -8.615850e-47 |
| Msa0735160 | Msa0827470 | 0.817840 | 2.675783e-52 | -8.615850e-47 |
| Msa0735160 | Msa0828660 | 0.804668 | 1.934576e-49 | -8.615850e-47 |
| Msa0735160 | Msa0834440 | 0.829638 | 4.603301e-55 | -8.615850e-47 |
| Msa0735160 | Msa0845070 | 0.838688 | 2.478094e-57 | -8.615850e-47 |
| Msa0735160 | Msa0847880 | 0.806773 | 6.991468e-50 | -8.615850e-47 |
| Msa0735160 | Msa0860400 | 0.807831 | 4.171064e-50 | -8.615850e-47 |
| Msa0735160 | Msa0861830 | 0.813073 | 3.078168e-51 | -8.615850e-47 |
| Msa0735160 | Msa0870530 | 0.804864 | 1.760687e-49 | -8.615850e-47 |
| Msa0735160 | Msa0873860 | 0.801739 | 7.812807e-49 | -8.615850e-47 |
| Msa0735160 | Msa0885610 | 0.801171 | 1.020924e-48 | -8.615850e-47 |
| Msa0735160 | Msa0903700 | 0.802289 | 6.021109e-49 | -8.615850e-47 |
| Msa0735160 | Msa0908170 | 0.810413 | 1.167079e-50 | -8.615850e-47 |
| Msa0735160 | Msa0939120 | 0.800494 | 1.403581e-48 | -8.615850e-47 |
| Msa0735160 | Msa0960740 | 0.800284 | 1.549058e-48 | -8.615850e-47 |
| Msa0735160 | Msa0973150 | 0.800958 | 1.128667e-48 | -8.615850e-47 |
| Msa0735160 | Msa0975940 | 0.802868 | 4.573842e-49 | -8.615850e-47 |
| Msa0735160 | Msa0994740 | 0.811259 | 7.654539e-51 | -8.615850e-47 |
| Msa0735160 | Msa1005410 | 0.812449 | 4.215315e-51 | -8.615850e-47 |
| Msa0735160 | Msa1006850 | 0.816397 | 5.648624e-52 | -8.615850e-47 |
| Msa0735160 | Msa1021510 | 0.851010 | 1.172123e-60 | -8.615850e-47 |
| Msa0735160 | Msa1031820 | 0.827650 | 1.391526e-54 | -8.615850e-47 |
| Msa0735160 | Msa1032170 | 0.808767 | 2.633827e-50 | -8.615850e-47 |
| Msa0735160 | Msa1033780 | 0.800481 | 1.412400e-48 | -8.615850e-47 |
| Msa0735160 | Msa1047720 | 0.821238 | 4.489231e-53 | -8.615850e-47 |
| Msa0735160 | Msa1070690 | 0.808957 | 2.399453e-50 | -8.615850e-47 |
| Msa0735160 | Msa1082500 | 0.809854 | 1.540238e-50 | -8.615850e-47 |
| Msa0735160 | Msa1084260 | 0.813344 | 2.683903e-51 | -8.615850e-47 |
| Msa0735160 | Msa1105500 | 0.846126 | 2.641572e-59 | -8.615850e-47 |
| Msa0735160 | Msa1115280 | 0.826600 | 2.481539e-54 | -8.615850e-47 |
| Msa0735160 | Msa1118760 | 0.815952 | 7.100335e-52 | -8.615850e-47 |
| Msa0735160 | Msa1127770 | 0.806386 | 8.437439e-50 | -8.615850e-47 |
| Msa0735160 | Msa1133570 | 0.817332 | 3.484485e-52 | -8.615850e-47 |
| Msa0735160 | Msa1135880 | 0.822390 | 2.430453e-53 | -8.615850e-47 |
| Msa0735160 | Msa1158660 | 0.815528 | 8.827415e-52 | -8.615850e-47 |
| Msa0735160 | Msa1171730 | 0.804112 | 2.525868e-49 | -8.615850e-47 |
| Msa0735160 | Msa1182130 | 0.817394 | 3.373851e-52 | -8.615850e-47 |
| Msa0735160 | Msa1229600 | 0.809135 | 2.198001e-50 | -8.615850e-47 |
| Msa0735160 | Msa1247030 | 0.838826 | 2.283621e-57 | -8.615850e-47 |
| Msa0735160 | Msa1288450 | 0.818351 | 2.050967e-52 | -8.615850e-47 |
| Msa0735160 | Msa1299070 | 0.811452 | 6.952318e-51 | -8.615850e-47 |
| Msa0735160 | Msa1307550 | 0.823074 | 1.684982e-53 | -8.615850e-47 |
| Msa0735160 | Msa1307740 | 0.804701 | 1.903972e-49 | -8.615850e-47 |
| Msa0735160 | Msa1310210 | 0.811353 | 7.303084e-51 | -8.615850e-47 |
| Msa0735160 | Msa1314770 | 0.801307 | 9.578860e-49 | -8.615850e-47 |
| Msa0735160 | Msa1317580 | 0.804396 | 2.204594e-49 | -8.615850e-47 |
| Msa0735160 | Msa1335710 | 0.832472 | 9.273827e-56 | -8.615850e-47 |
| Msa0735160 | Msa1338250 | 0.806004 | 1.015310e-49 | -8.615850e-47 |
| Msa0735160 | Msa1340810 | 0.800557 | 1.362668e-48 | -8.615850e-47 |
| Msa0735160 | Msa1360240 | 0.808864 | 2.511113e-50 | -8.615850e-47 |
| Msa0735160 | Msa1366300 | 0.806406 | 8.353884e-50 | -8.615850e-47 |
| Msa0735160 | Msa1372150 | 0.828109 | 1.079037e-54 | -8.615850e-47 |
| Msa0735160 | Msa1376890 | 0.827367 | 1.626957e-54 | -8.615850e-47 |
| Msa0735160 | Msa1379850 | 0.828939 | 6.802363e-55 | -8.615850e-47 |
| Msa0735160 | Msa1390120 | 0.803607 | 3.215206e-49 | -8.615850e-47 |
| Msa0735160 | Msa1393410 | 0.812363 | 4.402735e-51 | -8.615850e-47 |
| Msa0735160 | Msa1395530 | 0.804017 | 2.643450e-49 | -8.615850e-47 |
| Msa0735160 | Msa1397260 | 0.823017 | 1.736613e-53 | -8.615850e-47 |
| Msa0735160 | Msa1400070 | 0.820420 | 6.922791e-53 | -8.615850e-47 |
| Msa0735160 | Msa1401140 | 0.821498 | 3.910839e-53 | -8.615850e-47 |
| Msa0735160 | Msa1404540 | 0.806130 | 9.552947e-50 | -8.615850e-47 |
| Msa0735160 | Msa1407650 | 0.815469 | 9.097039e-52 | -8.615850e-47 |
| Msa0735160 | Msa1431060 | 0.815690 | 8.122708e-52 | -8.615850e-47 |
| Msa0735160 | Msa1433220 | 0.833048 | 6.670369e-56 | -8.615850e-47 |
| Msa0735160 | Msa1435400 | 0.847530 | 1.091044e-59 | -8.615850e-47 |
| Msa0735160 | Msa1435420 | 0.814182 | 1.754512e-51 | -8.615850e-47 |
| Msa0735160 | Msa1440940 | 0.829116 | 6.161389e-55 | -8.615850e-47 |
| Msa0735160 | Msa1445220 | 0.823935 | 1.059275e-53 | -8.615850e-47 |
| Msa0137570 | Msa0735160 | 0.812514 | 4.079620e-51 | -8.615850e-47 |
| Msa0139700 | Msa0735160 | 0.809577 | 1.766096e-50 | -8.615850e-47 |
| Msa0165300 | Msa0735160 | 0.821758 | 3.406253e-53 | -8.615850e-47 |
| Msa0169820 | Msa0735160 | 0.818521 | 1.877062e-52 | -8.615850e-47 |
| Msa0170140 | Msa0735160 | 0.803887 | 2.813212e-49 | -8.615850e-47 |
| Msa0178510 | Msa0735160 | 0.837193 | 6.006665e-57 | -8.615850e-47 |
| Msa0182570 | Msa0735160 | 0.802565 | 5.282229e-49 | -8.615850e-47 |
| Msa0187830 | Msa0735160 | 0.804008 | 2.654667e-49 | -8.615850e-47 |
| Msa0188050 | Msa0735160 | 0.848858 | 4.688811e-60 | -8.615850e-47 |
| Msa0199800 | Msa0735160 | -0.812641 | 3.828344e-51 | -8.615850e-47 |
| Msa0227230 | Msa0735160 | 0.802976 | 4.343560e-49 | -8.615850e-47 |
| Msa0236700 | Msa0735160 | -0.802881 | 4.545092e-49 | -8.615850e-47 |
| Msa0365490 | Msa0735160 | 0.824826 | 6.539398e-54 | -8.615850e-47 |
| Msa0377530 | Msa0735160 | 0.800039 | 1.737343e-48 | -8.615850e-47 |
| Msa0378380 | Msa0735160 | 0.818972 | 1.482486e-52 | -8.615850e-47 |
| Msa0388030 | Msa0735160 | -0.840675 | 7.538165e-58 | -8.615850e-47 |
| Msa0422500 | Msa0735160 | 0.802301 | 5.986696e-49 | -8.615850e-47 |
| Msa0427980 | Msa0735160 | 0.803335 | 3.660825e-49 | -8.615850e-47 |
| Msa0436370 | Msa0735160 | 0.827867 | 1.234053e-54 | -8.615850e-47 |
| Msa0445280 | Msa0735160 | 0.834924 | 2.262311e-56 | -8.615850e-47 |
| Msa0450350 | Msa0735160 | 0.817039 | 4.055131e-52 | -8.615850e-47 |
| Msa0458440 | Msa0735160 | 0.813693 | 2.249367e-51 | -8.615850e-47 |
| Msa0464900 | Msa0735160 | 0.816342 | 5.810956e-52 | -8.615850e-47 |
| Msa0468130 | Msa0735160 | 0.803154 | 3.990633e-49 | -8.615850e-47 |
| Msa0473240 | Msa0735160 | 0.825551 | 4.406754e-54 | -8.615850e-47 |
| Msa0239690 | Msa0735160 | 0.841653 | 4.169513e-58 | -8.615850e-47 |
| Msa0260810 | Msa0735160 | 0.801573 | 8.447625e-49 | -8.615850e-47 |
| Msa0266240 | Msa0735160 | 0.818830 | 1.596961e-52 | -8.615850e-47 |
| Msa0276920 | Msa0735160 | 0.810148 | 1.331099e-50 | -8.615850e-47 |
| Msa0277790 | Msa0735160 | 0.805494 | 1.299276e-49 | -8.615850e-47 |
| Msa0322680 | Msa0735160 | 0.800376 | 1.483556e-48 | -8.615850e-47 |
| Msa0335040 | Msa0735160 | 0.817362 | 3.430516e-52 | -8.615850e-47 |
| Msa0340710 | Msa0735160 | 0.801618 | 8.270731e-49 | -8.615850e-47 |
| Msa0344870 | Msa0735160 | 0.805430 | 1.340302e-49 | -8.615850e-47 |
| Msa0350840 | Msa0735160 | 0.801278 | 9.708192e-49 | -8.615850e-47 |
| Msa0356890 | Msa0735160 | -0.805454 | 1.324467e-49 | -8.615850e-47 |
| Msa0484780 | Msa0735160 | 0.820167 | 7.913258e-53 | -8.615850e-47 |
| Msa0491520 | Msa0735160 | 0.801537 | 8.592102e-49 | -8.615850e-47 |
| Msa0492710 | Msa0735160 | 0.808400 | 3.156032e-50 | -8.615850e-47 |
| Msa0505060 | Msa0735160 | 0.809181 | 2.147987e-50 | -8.615850e-47 |
| Msa0506790 | Msa0735160 | 0.819774 | 9.735456e-53 | -8.615850e-47 |
| Msa0516370 | Msa0735160 | 0.805495 | 1.298878e-49 | -8.615850e-47 |
| Msa0517490 | Msa0735160 | 0.819098 | 1.388174e-52 | -8.615850e-47 |
| Msa0518560 | Msa0735160 | 0.812229 | 4.709673e-51 | -8.615850e-47 |
| Msa0519190 | Msa0735160 | 0.807115 | 5.916412e-50 | -8.615850e-47 |
| Msa0522640 | Msa0735160 | 0.826098 | 3.268593e-54 | -8.615850e-47 |
| Msa0530650 | Msa0735160 | 0.828756 | 7.532623e-55 | -8.615850e-47 |
| Msa0535320 | Msa0735160 | 0.810930 | 9.024179e-51 | -8.615850e-47 |
| Msa0558690 | Msa0735160 | 0.814936 | 1.195222e-51 | -8.615850e-47 |
| Msa0567020 | Msa0735160 | 0.814021 | 1.904314e-51 | -8.615850e-47 |
| Msa0572420 | Msa0735160 | 0.811569 | 6.555555e-51 | -8.615850e-47 |
| Msa0572480 | Msa0735160 | 0.814692 | 1.353808e-51 | -8.615850e-47 |
| Msa0573040 | Msa0735160 | 0.830392 | 3.013594e-55 | -8.615850e-47 |
| Msa0587190 | Msa0735160 | 0.827824 | 1.264081e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0735160 | MtrunA17_Chr5g0427021 | 94.845 | 194 | 3 | 2 | 1 | 193 | 1 | 188 | 2.24e-131 | 366 |
| Msa0735160 | MtrunA17_Chr7g0231881 | 46.970 | 66 | 33 | 1 | 14 | 79 | 5 | 68 | 9.20e-14 | 65.1 |
| Msa0735160 | MtrunA17_Chr8g0334651 | 45.614 | 57 | 31 | 0 | 17 | 73 | 8 | 64 | 4.49e-13 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0735160 | AT1G02070.1 | 52.830 | 53 | 16 | 2 | 17 | 64 | 5 | 53 | 1.23e-11 | 60.1 |
Find 35 sgRNAs with CRISPR-Local
Find 133 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGCTTCTGATGGTGATTT+TGG | 0.180402 | 5_1:+50206087 | None:intergenic |
| TTTGGTTTCTTCATTGGTTT+TGG | 0.200009 | 5_1:+50206105 | None:intergenic |
| GATGAAGAATTTGAAGAGTT+TGG | 0.223033 | 5_1:+50206240 | None:intergenic |
| ACCTGTGTTGAGATCGGATT+TGG | 0.307776 | 5_1:+50206655 | None:intergenic |
| TCGCACGTTAAAATGACATT+AGG | 0.309724 | 5_1:+50205696 | None:intergenic |
| CAACTTAATGAAGTTATGTT+TGG | 0.318699 | 5_1:-50205543 | Msa0735160:three_prime_UTR |
| CTTATTCCTGAAAACTTGTT+TGG | 0.327849 | 5_1:+50205921 | None:intergenic |
| TTAGTTATGTACATTGCATT+AGG | 0.341687 | 5_1:+50205761 | None:intergenic |
| AAAAGTAGTAATAATAATAT+TGG | 0.354978 | 5_1:-50205949 | Msa0735160:CDS |
| CGCACGTTAAAATGACATTA+GGG | 0.360940 | 5_1:+50205697 | None:intergenic |
| CGAGTTGAAACTAAAATAGA+TGG | 0.362041 | 5_1:+50206039 | None:intergenic |
| CACATGCAACACTCTGTCTT+TGG | 0.364915 | 5_1:+50206723 | None:intergenic |
| TGTTGCATGTGTGGGGATCT+TGG | 0.374832 | 5_1:-50206711 | Msa0735160:CDS |
| AATCATCACAAACGGTGCTT+TGG | 0.403206 | 5_1:-50206010 | Msa0735160:CDS |
| CGCAAAAGAATCATCACAAA+CGG | 0.503705 | 5_1:-50206018 | Msa0735160:CDS |
| CAGAAGAAGGGAGTAATCAA+AGG | 0.509405 | 5_1:-50206153 | Msa0735160:CDS |
| TTAAATACCTGTGTTGAGAT+CGG | 0.514874 | 5_1:+50206649 | None:intergenic |
| AGCTATTAGGACTGAATTGA+CGG | 0.515966 | 5_1:-50205577 | Msa0735160:three_prime_UTR |
| TTAATGAAGTTATGTTTGGA+TGG | 0.537344 | 5_1:-50205539 | Msa0735160:three_prime_UTR |
| GATAGATGAAGAACTAGTAG+AGG | 0.538946 | 5_1:+50206854 | None:intergenic |
| GGAGATGTTGATGATGCTAT+TGG | 0.539445 | 5_1:+50206060 | None:intergenic |
| AAGGGAGTAATCAAAGGAAG+TGG | 0.542816 | 5_1:-50206147 | Msa0735160:CDS |
| AATGAAAGCACAGAAGATGA+AGG | 0.559578 | 5_1:-50206204 | Msa0735160:CDS |
| AGTCTATATCTTGTTTAACT+CGG | 0.560190 | 5_1:-50206926 | Msa0735160:five_prime_UTR |
| GCGACAAGGAAAATTAGAAT+CGG | 0.571787 | 5_1:-50205677 | Msa0735160:three_prime_UTR |
| TTGAGTACTCAATGAGGTTG+TGG | 0.572693 | 5_1:-50205645 | Msa0735160:three_prime_UTR |
| ATAGATAACATGACAAGCAA+AGG | 0.583254 | 5_1:-50206768 | Msa0735160:exon |
| AAGACAGAGTGTTGCATGTG+TGG | 0.591608 | 5_1:-50206720 | Msa0735160:CDS |
| GTGCTTTGGAAGAGAAGTTG+AGG | 0.598720 | 5_1:-50205996 | Msa0735160:CDS |
| AGACAGAGTGTTGCATGTGT+GGG | 0.608298 | 5_1:-50206719 | Msa0735160:CDS |
| GCCAAATCCGATCTCAACAC+AGG | 0.610494 | 5_1:-50206656 | Msa0735160:intron |
| GTACTCAATGAGGTTGTGGT+AGG | 0.617424 | 5_1:-50205641 | Msa0735160:three_prime_UTR |
| GACAGAGTGTTGCATGTGTG+GGG | 0.680628 | 5_1:-50206718 | Msa0735160:CDS |
| TGTTGATTGAGTACTCAATG+AGG | 0.683702 | 5_1:-50205651 | Msa0735160:three_prime_UTR |
| TTGGTGTCTGAGTCAGAACG+AGG | 0.720670 | 5_1:-50206268 | Msa0735160:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTCATTAAAAAAAAGATTAA+GGG | + | chr5_1:50205757-50205776 | None:intergenic | 10.0% |
| !! | TTTCATTAAAAAAAAGATTA+AGG | + | chr5_1:50205758-50205777 | None:intergenic | 10.0% |
| !! | AAAAGTAGTAATAATAATAT+TGG | - | chr5_1:50206411-50206430 | Msa0735160:intron | 10.0% |
| !!! | TAATATATAGTATTTTGTTT+TGG | - | chr5_1:50206567-50206586 | Msa0735160:intron | 10.0% |
| !! | AATTATAAAAAGTTTATTTG+CGG | - | chr5_1:50206906-50206925 | Msa0735160:five_prime_UTR | 10.0% |
| !! | TTCATTAAAAAAAAGATTAA+GGG | + | chr5_1:50205757-50205776 | None:intergenic | 10.0% |
| !! | TTTCATTAAAAAAAAGATTA+AGG | + | chr5_1:50205758-50205777 | None:intergenic | 10.0% |
| !! | AAAAGTAGTAATAATAATAT+TGG | - | chr5_1:50206411-50206430 | Msa0735160:intron | 10.0% |
| !!! | TAATATATAGTATTTTGTTT+TGG | - | chr5_1:50206567-50206586 | Msa0735160:intron | 10.0% |
| !! | TATTGTATTTAAATTTAGTG+AGG | - | chr5_1:50205911-50205930 | Msa0735160:CDS | 15.0% |
| !! | AAACAAAAAAAGAAAAGAAA+AGG | - | chr5_1:50206524-50206543 | Msa0735160:intron | 15.0% |
| !! | AACAAAAAAAGAAAAGAAAA+GGG | - | chr5_1:50206525-50206544 | Msa0735160:intron | 15.0% |
| !! | TATTGTATTTAAATTTAGTG+AGG | - | chr5_1:50205911-50205930 | Msa0735160:CDS | 15.0% |
| !! | AAACAAAAAAAGAAAAGAAA+AGG | - | chr5_1:50206524-50206543 | Msa0735160:intron | 15.0% |
| !! | AACAAAAAAAGAAAAGAAAA+GGG | - | chr5_1:50206525-50206544 | Msa0735160:intron | 15.0% |
| !!! | AATTTTTTTGTTATTTGGTG+TGG | - | chr5_1:50205979-50205998 | Msa0735160:CDS | 20.0% |
| !!! | AATTTTTTGGAACATGTAAT+TGG | - | chr5_1:50206073-50206092 | Msa0735160:CDS | 20.0% |
| !!! | AAAAAATTGTTTTCAGAAGA+AGG | - | chr5_1:50206194-50206213 | Msa0735160:CDS | 20.0% |
| !!! | AAAAATTGTTTTCAGAAGAA+GGG | - | chr5_1:50206195-50206214 | Msa0735160:CDS | 20.0% |
| !!! | AATTTTTTTGTTATTTGGTG+TGG | - | chr5_1:50205979-50205998 | Msa0735160:CDS | 20.0% |
| !!! | AATTTTTTGGAACATGTAAT+TGG | - | chr5_1:50206073-50206092 | Msa0735160:CDS | 20.0% |
| !!! | AAAAAATTGTTTTCAGAAGA+AGG | - | chr5_1:50206194-50206213 | Msa0735160:CDS | 20.0% |
| !!! | AAAAATTGTTTTCAGAAGAA+GGG | - | chr5_1:50206195-50206214 | Msa0735160:CDS | 20.0% |
| !! | AGTCTATATCTTGTTTAACT+CGG | - | chr5_1:50205434-50205453 | Msa0735160:three_prime_UTR | 25.0% |
| !!! | CTCTTTACCTTTTTTATTTG+TGG | - | chr5_1:50205476-50205495 | Msa0735160:three_prime_UTR | 25.0% |
| ! | CTAATGACCACAAATAAAAA+AGG | + | chr5_1:50205486-50205505 | None:intergenic | 25.0% |
| !! | TACCTACAAAATTTTCATGA+AGG | + | chr5_1:50206027-50206046 | None:intergenic | 25.0% |
| !!! | TATCCAACAACAGAATTTTT+TGG | - | chr5_1:50206060-50206079 | Msa0735160:CDS | 25.0% |
| ! | TTAGTTATGTACATTGCATT+AGG | + | chr5_1:50206602-50206621 | None:intergenic | 25.0% |
| !! | ATATTTTGTGTGAAGCTATT+AGG | - | chr5_1:50206770-50206789 | Msa0735160:exon | 25.0% |
| ! | CAACTTAATGAAGTTATGTT+TGG | - | chr5_1:50206817-50206836 | Msa0735160:five_prime_UTR | 25.0% |
| ! | TTAATGAAGTTATGTTTGGA+TGG | - | chr5_1:50206821-50206840 | Msa0735160:five_prime_UTR | 25.0% |
| !! | AGTCTATATCTTGTTTAACT+CGG | - | chr5_1:50205434-50205453 | Msa0735160:three_prime_UTR | 25.0% |
| !!! | CTCTTTACCTTTTTTATTTG+TGG | - | chr5_1:50205476-50205495 | Msa0735160:three_prime_UTR | 25.0% |
| ! | CTAATGACCACAAATAAAAA+AGG | + | chr5_1:50205486-50205505 | None:intergenic | 25.0% |
| !! | TACCTACAAAATTTTCATGA+AGG | + | chr5_1:50206027-50206046 | None:intergenic | 25.0% |
| !!! | TATCCAACAACAGAATTTTT+TGG | - | chr5_1:50206060-50206079 | Msa0735160:CDS | 25.0% |
| ! | TTAGTTATGTACATTGCATT+AGG | + | chr5_1:50206602-50206621 | None:intergenic | 25.0% |
| !! | ATATTTTGTGTGAAGCTATT+AGG | - | chr5_1:50206770-50206789 | Msa0735160:exon | 25.0% |
| ! | CAACTTAATGAAGTTATGTT+TGG | - | chr5_1:50206817-50206836 | Msa0735160:five_prime_UTR | 25.0% |
| ! | TTAATGAAGTTATGTTTGGA+TGG | - | chr5_1:50206821-50206840 | Msa0735160:five_prime_UTR | 25.0% |
| ATAGATAACATGACAAGCAA+AGG | - | chr5_1:50205592-50205611 | Msa0735160:three_prime_UTR | 30.0% | |
| ! | AGATTTTGCATAGAAAAAGC+TGG | + | chr5_1:50205684-50205703 | None:intergenic | 30.0% |
| TTAAATACCTGTGTTGAGAT+CGG | + | chr5_1:50205714-50205733 | None:intergenic | 30.0% | |
| ! | CTCCTTCATGAAAATTTTGT+AGG | - | chr5_1:50206022-50206041 | Msa0735160:CDS | 30.0% |
| GTTCCAAAAAATTCTGTTGT+TGG | + | chr5_1:50206066-50206085 | None:intergenic | 30.0% | |
| GATGAAGAATTTGAAGAGTT+TGG | + | chr5_1:50206123-50206142 | None:intergenic | 30.0% | |
| !!! | TTTGGTTTCTTCATTGGTTT+TGG | + | chr5_1:50206258-50206277 | None:intergenic | 30.0% |
| ! | CGAGTTGAAACTAAAATAGA+TGG | + | chr5_1:50206324-50206343 | None:intergenic | 30.0% |
| ! | CTTATTCCTGAAAACTTGTT+TGG | + | chr5_1:50206442-50206461 | None:intergenic | 30.0% |
| !! | CAAACAAGTTTTCAGGAATA+AGG | - | chr5_1:50206440-50206459 | Msa0735160:intron | 30.0% |
| !! | TTTTCAGGAATAAGGTAAGA+AGG | - | chr5_1:50206448-50206467 | Msa0735160:intron | 30.0% |
| ATAGATAACATGACAAGCAA+AGG | - | chr5_1:50205592-50205611 | Msa0735160:three_prime_UTR | 30.0% | |
| ! | AGATTTTGCATAGAAAAAGC+TGG | + | chr5_1:50205684-50205703 | None:intergenic | 30.0% |
| TTAAATACCTGTGTTGAGAT+CGG | + | chr5_1:50205714-50205733 | None:intergenic | 30.0% | |
| ! | CTCCTTCATGAAAATTTTGT+AGG | - | chr5_1:50206022-50206041 | Msa0735160:CDS | 30.0% |
| GTTCCAAAAAATTCTGTTGT+TGG | + | chr5_1:50206066-50206085 | None:intergenic | 30.0% | |
| GATGAAGAATTTGAAGAGTT+TGG | + | chr5_1:50206123-50206142 | None:intergenic | 30.0% | |
| !!! | TTTGGTTTCTTCATTGGTTT+TGG | + | chr5_1:50206258-50206277 | None:intergenic | 30.0% |
| ! | CGAGTTGAAACTAAAATAGA+TGG | + | chr5_1:50206324-50206343 | None:intergenic | 30.0% |
| ! | CTTATTCCTGAAAACTTGTT+TGG | + | chr5_1:50206442-50206461 | None:intergenic | 30.0% |
| !! | CAAACAAGTTTTCAGGAATA+AGG | - | chr5_1:50206440-50206459 | Msa0735160:intron | 30.0% |
| !! | TTTTCAGGAATAAGGTAAGA+AGG | - | chr5_1:50206448-50206467 | Msa0735160:intron | 30.0% |
| !!! | ACTCGGTTTAGTCTTTTTTG+TGG | - | chr5_1:50205451-50205470 | Msa0735160:three_prime_UTR | 35.0% |
| !!! | CTCGGTTTAGTCTTTTTTGT+GGG | - | chr5_1:50205452-50205471 | Msa0735160:three_prime_UTR | 35.0% |
| GATAGATGAAGAACTAGTAG+AGG | + | chr5_1:50205509-50205528 | None:intergenic | 35.0% | |
| !! | TTGTTATTTGGTGTGGTCTT+TGG | - | chr5_1:50205986-50206005 | Msa0735160:CDS | 35.0% |
| ! | AATGAAAGCACAGAAGATGA+AGG | - | chr5_1:50206156-50206175 | Msa0735160:CDS | 35.0% |
| !!! | GGTGATTTTGGTTTCTTCAT+TGG | + | chr5_1:50206264-50206283 | None:intergenic | 35.0% |
| !! | TTTGCTTCTGATGGTGATTT+TGG | + | chr5_1:50206276-50206295 | None:intergenic | 35.0% |
| !! | ATTGGTGATTTTGCTTCTGA+TGG | + | chr5_1:50206285-50206304 | None:intergenic | 35.0% |
| CGCAAAAGAATCATCACAAA+CGG | - | chr5_1:50206342-50206361 | Msa0735160:intron | 35.0% | |
| CGCACGTTAAAATGACATTA+GGG | + | chr5_1:50206666-50206685 | None:intergenic | 35.0% | |
| TCGCACGTTAAAATGACATT+AGG | + | chr5_1:50206667-50206686 | None:intergenic | 35.0% | |
| GCGACAAGGAAAATTAGAAT+CGG | - | chr5_1:50206683-50206702 | Msa0735160:CDS | 35.0% | |
| ! | TGTTGATTGAGTACTCAATG+AGG | - | chr5_1:50206709-50206728 | Msa0735160:CDS | 35.0% |
| AGCTATTAGGACTGAATTGA+CGG | - | chr5_1:50206783-50206802 | Msa0735160:five_prime_UTR | 35.0% | |
| GTTTGGATGGAAGAGAAAAA+AGG | - | chr5_1:50206834-50206853 | Msa0735160:five_prime_UTR | 35.0% | |
| !!! | ACTCGGTTTAGTCTTTTTTG+TGG | - | chr5_1:50205451-50205470 | Msa0735160:three_prime_UTR | 35.0% |
| !!! | CTCGGTTTAGTCTTTTTTGT+GGG | - | chr5_1:50205452-50205471 | Msa0735160:three_prime_UTR | 35.0% |
| GATAGATGAAGAACTAGTAG+AGG | + | chr5_1:50205509-50205528 | None:intergenic | 35.0% | |
| !! | TTGTTATTTGGTGTGGTCTT+TGG | - | chr5_1:50205986-50206005 | Msa0735160:CDS | 35.0% |
| ! | AATGAAAGCACAGAAGATGA+AGG | - | chr5_1:50206156-50206175 | Msa0735160:CDS | 35.0% |
| !!! | GGTGATTTTGGTTTCTTCAT+TGG | + | chr5_1:50206264-50206283 | None:intergenic | 35.0% |
| !! | TTTGCTTCTGATGGTGATTT+TGG | + | chr5_1:50206276-50206295 | None:intergenic | 35.0% |
| !! | ATTGGTGATTTTGCTTCTGA+TGG | + | chr5_1:50206285-50206304 | None:intergenic | 35.0% |
| CGCAAAAGAATCATCACAAA+CGG | - | chr5_1:50206342-50206361 | Msa0735160:intron | 35.0% | |
| CGCACGTTAAAATGACATTA+GGG | + | chr5_1:50206666-50206685 | None:intergenic | 35.0% | |
| TCGCACGTTAAAATGACATT+AGG | + | chr5_1:50206667-50206686 | None:intergenic | 35.0% | |
| GCGACAAGGAAAATTAGAAT+CGG | - | chr5_1:50206683-50206702 | Msa0735160:CDS | 35.0% | |
| ! | TGTTGATTGAGTACTCAATG+AGG | - | chr5_1:50206709-50206728 | Msa0735160:CDS | 35.0% |
| AGCTATTAGGACTGAATTGA+CGG | - | chr5_1:50206783-50206802 | Msa0735160:five_prime_UTR | 35.0% | |
| GTTTGGATGGAAGAGAAAAA+AGG | - | chr5_1:50206834-50206853 | Msa0735160:five_prime_UTR | 35.0% | |
| CAGAAGAAGGGAGTAATCAA+AGG | - | chr5_1:50206207-50206226 | Msa0735160:CDS | 40.0% | |
| AAGGGAGTAATCAAAGGAAG+TGG | - | chr5_1:50206213-50206232 | Msa0735160:CDS | 40.0% | |
| !! | GGAGATGTTGATGATGCTAT+TGG | + | chr5_1:50206303-50206322 | None:intergenic | 40.0% |
| AATCATCACAAACGGTGCTT+TGG | - | chr5_1:50206350-50206369 | Msa0735160:intron | 40.0% | |
| ! | GTGTGACCAAACAAGTTTTC+AGG | - | chr5_1:50206433-50206452 | Msa0735160:intron | 40.0% |
| !!! | TGTCATTTTAACGTGCGACA+AGG | - | chr5_1:50206669-50206688 | Msa0735160:CDS | 40.0% |
| TTGAGTACTCAATGAGGTTG+TGG | - | chr5_1:50206715-50206734 | Msa0735160:CDS | 40.0% | |
| GGATGGAAGAGAAAAAAGGA+CGG | - | chr5_1:50206838-50206857 | Msa0735160:five_prime_UTR | 40.0% | |
| CAGAAGAAGGGAGTAATCAA+AGG | - | chr5_1:50206207-50206226 | Msa0735160:CDS | 40.0% | |
| AAGGGAGTAATCAAAGGAAG+TGG | - | chr5_1:50206213-50206232 | Msa0735160:CDS | 40.0% | |
| !! | GGAGATGTTGATGATGCTAT+TGG | + | chr5_1:50206303-50206322 | None:intergenic | 40.0% |
| AATCATCACAAACGGTGCTT+TGG | - | chr5_1:50206350-50206369 | Msa0735160:intron | 40.0% | |
| ! | GTGTGACCAAACAAGTTTTC+AGG | - | chr5_1:50206433-50206452 | Msa0735160:intron | 40.0% |
| !!! | TGTCATTTTAACGTGCGACA+AGG | - | chr5_1:50206669-50206688 | Msa0735160:CDS | 40.0% |
| TTGAGTACTCAATGAGGTTG+TGG | - | chr5_1:50206715-50206734 | Msa0735160:CDS | 40.0% | |
| GGATGGAAGAGAAAAAAGGA+CGG | - | chr5_1:50206838-50206857 | Msa0735160:five_prime_UTR | 40.0% | |
| CACATGCAACACTCTGTCTT+TGG | + | chr5_1:50205640-50205659 | None:intergenic | 45.0% | |
| !! | AAGACAGAGTGTTGCATGTG+TGG | - | chr5_1:50205640-50205659 | Msa0735160:three_prime_UTR | 45.0% |
| !! | AGACAGAGTGTTGCATGTGT+GGG | - | chr5_1:50205641-50205660 | Msa0735160:three_prime_UTR | 45.0% |
| ACCTGTGTTGAGATCGGATT+TGG | + | chr5_1:50205708-50205727 | None:intergenic | 45.0% | |
| !! | GTGCTTTGGAAGAGAAGTTG+AGG | - | chr5_1:50206364-50206383 | Msa0735160:intron | 45.0% |
| GTACTCAATGAGGTTGTGGT+AGG | - | chr5_1:50206719-50206738 | Msa0735160:CDS | 45.0% | |
| CACATGCAACACTCTGTCTT+TGG | + | chr5_1:50205640-50205659 | None:intergenic | 45.0% | |
| !! | AAGACAGAGTGTTGCATGTG+TGG | - | chr5_1:50205640-50205659 | Msa0735160:three_prime_UTR | 45.0% |
| !! | AGACAGAGTGTTGCATGTGT+GGG | - | chr5_1:50205641-50205660 | Msa0735160:three_prime_UTR | 45.0% |
| ACCTGTGTTGAGATCGGATT+TGG | + | chr5_1:50205708-50205727 | None:intergenic | 45.0% | |
| !! | GTGCTTTGGAAGAGAAGTTG+AGG | - | chr5_1:50206364-50206383 | Msa0735160:intron | 45.0% |
| GTACTCAATGAGGTTGTGGT+AGG | - | chr5_1:50206719-50206738 | Msa0735160:CDS | 45.0% | |
| !!! | ATAAATTTTATATTTTTGTA+AGG | - | chr5_1:50205854-50205873 | Msa0735160:three_prime_UTR | 5.0% |
| !!! | AATATAATTTTTTTGTTATT+TGG | - | chr5_1:50205974-50205993 | Msa0735160:CDS | 5.0% |
| !!! | ATAAATTTTATATTTTTGTA+AGG | - | chr5_1:50205854-50205873 | Msa0735160:three_prime_UTR | 5.0% |
| !!! | AATATAATTTTTTTGTTATT+TGG | - | chr5_1:50205974-50205993 | Msa0735160:CDS | 5.0% |
| !! | GACAGAGTGTTGCATGTGTG+GGG | - | chr5_1:50205642-50205661 | Msa0735160:three_prime_UTR | 50.0% |
| TGTTGCATGTGTGGGGATCT+TGG | - | chr5_1:50205649-50205668 | Msa0735160:three_prime_UTR | 50.0% | |
| GCCAAATCCGATCTCAACAC+AGG | - | chr5_1:50205704-50205723 | Msa0735160:three_prime_UTR | 50.0% | |
| ! | TTGGTGTCTGAGTCAGAACG+AGG | - | chr5_1:50206092-50206111 | Msa0735160:CDS | 50.0% |
| !! | GACAGAGTGTTGCATGTGTG+GGG | - | chr5_1:50205642-50205661 | Msa0735160:three_prime_UTR | 50.0% |
| TGTTGCATGTGTGGGGATCT+TGG | - | chr5_1:50205649-50205668 | Msa0735160:three_prime_UTR | 50.0% | |
| GCCAAATCCGATCTCAACAC+AGG | - | chr5_1:50205704-50205723 | Msa0735160:three_prime_UTR | 50.0% | |
| ! | TTGGTGTCTGAGTCAGAACG+AGG | - | chr5_1:50206092-50206111 | Msa0735160:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 50205422 | 50206960 | 50205422 | ID=Msa0735160;Name=Msa0735160 |
| chr5_1 | mRNA | 50205422 | 50206960 | 50205422 | ID=Msa0735160-mRNA-1;Parent=Msa0735160;Name=Msa0735160-mRNA-1;_AED=0.01;_eAED=0.01;_QI=179|1|1|1|1|1|2|460|193 |
| chr5_1 | exon | 50205422 | 50206338 | 50205422 | ID=Msa0735160-mRNA-1:exon:14211;Parent=Msa0735160-mRNA-1 |
| chr5_1 | exon | 50206657 | 50206960 | 50206657 | ID=Msa0735160-mRNA-1:exon:14210;Parent=Msa0735160-mRNA-1 |
| chr5_1 | five_prime_UTR | 50206782 | 50206960 | 50206782 | ID=Msa0735160-mRNA-1:five_prime_utr;Parent=Msa0735160-mRNA-1 |
| chr5_1 | CDS | 50206657 | 50206781 | 50206657 | ID=Msa0735160-mRNA-1:cds;Parent=Msa0735160-mRNA-1 |
| chr5_1 | CDS | 50205882 | 50206338 | 50205882 | ID=Msa0735160-mRNA-1:cds;Parent=Msa0735160-mRNA-1 |
| chr5_1 | three_prime_UTR | 50205422 | 50205881 | 50205422 | ID=Msa0735160-mRNA-1:three_prime_utr;Parent=Msa0735160-mRNA-1 |
| Gene Sequence |
| Protein sequence |
