AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1408620


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1408620 MtrunA17_Chr1g0175861 98.039 102 2 0 3 104 57 158 2.36e-67 199
Msa1408620 MtrunA17_Chr4g0026361 39.726 73 44 0 6 78 40 112 5.89e-16 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1408620 AT2G41945.1 72.222 90 25 0 7 96 61 150 1.28e-34 117
Msa1408620 AT2G41945.2 70.652 92 27 0 6 97 60 151 3.48e-34 115
Msa1408620 AT2G41945.3 50.388 129 26 1 7 97 61 189 1.31e-26 97.8
Msa1408620 AT5G18250.1 41.333 75 44 0 6 80 41 115 2.57e-15 67.0
Msa1408620 AT3G04040.1 40.000 75 45 0 6 80 45 119 4.60e-14 63.9

Find 44 sgRNAs with CRISPR-Local

Find 388 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTCCATTGTTGATATTTGC+AGG 0.287789 tig0023402:-29171 Msa1408620:CDS
TCCTCGAGTGCATCACATTA+TGG 0.309834 tig0023402:-24866 Msa1408620:CDS
GCAGTTCATGGTTTGAATAA+TGG 0.316010 tig0023402:-29773 Msa1408620:intron
TAACGCCTGCTCCCTAAAAC+AGG 0.381534 tig0023402:+24534 None:intergenic
GCAGGAGCTAGTGCTGCATT+TGG 0.402229 tig0023402:-29153 Msa1408620:CDS
ATTACATGCATGGCACATTA+CGG 0.413451 tig0023402:-24751 Msa1408620:three_prime_UTR
ATACCGTCTTGTGGATGGTT+AGG 0.417981 tig0023402:-24677 Msa1408620:three_prime_UTR
ATGCATGGCACATTACGGTT+TGG 0.426746 tig0023402:-24746 Msa1408620:three_prime_UTR
GAATAGGTTGGCTCCGGGGT+TGG 0.430200 tig0023402:-29809 Msa1408620:intron
TGTAGTTCTCTTCAATATGC+CGG 0.430246 tig0023402:+24828 None:intergenic
TTGGTTGAATAGGTTGGCTC+CGG 0.433387 tig0023402:-29815 Msa1408620:intron
TGCACTCGAGGAGGCATAAT+AGG 0.440530 tig0023402:+24877 None:intergenic
CCTCTTCAGATGCGGTGGAT+TGG 0.458771 tig0023402:+24802 None:intergenic
GGAATGCTTAGTGCAGTTCA+TGG 0.470593 tig0023402:-29785 Msa1408620:CDS
TGGTTGAATAGGTTGGCTCC+GGG 0.479944 tig0023402:-29814 Msa1408620:intron
CTACATACCCCAACCACAAA+AGG 0.489011 tig0023402:+29392 None:intergenic
TAGGTTGGCTCCGGGGTTGG+TGG 0.490007 tig0023402:-29806 Msa1408620:CDS
GTAGTTCTCTTCAATATGCC+GGG 0.506415 tig0023402:+24829 None:intergenic
CAGAAATACCGTCTTGTGGA+TGG 0.531395 tig0023402:-24682 Msa1408620:three_prime_UTR
CCAATCCACCGCATCTGAAG+AGG 0.536200 tig0023402:-24802 Msa1408620:CDS
GGAGCTAGTGCTGCATTTGG+AGG 0.542358 tig0023402:-29150 Msa1408620:intron
ACTGTGAGTTGAGCGAACTT+TGG 0.549262 tig0023402:+24905 None:intergenic
GTGGATGGTTAGGATTTCTG+AGG 0.558777 tig0023402:-24667 Msa1408620:three_prime_UTR
TATCTTCAAAATCGTCTGAA+AGG 0.560254 tig0023402:-29428 Msa1408620:CDS
CAGAGCCTCTTCAGATGCGG+TGG 0.561601 tig0023402:+24797 None:intergenic
CCACAAGACGGTATTTCTGC+AGG 0.562112 tig0023402:+24686 None:intergenic
GCACCATACTATTCAAAATG+AGG 0.566027 tig0023402:+24557 None:intergenic
ACCACAAAAGGCAGCCACTT+CGG 0.566772 tig0023402:+29404 None:intergenic
TGTGTCATTCATTACATGCA+TGG 0.574984 tig0023402:-24761 Msa1408620:three_prime_UTR
TCCATAATGTGATGCACTCG+AGG 0.582689 tig0023402:+24865 None:intergenic
ATGGAATCTCTCTTCTCACC+CGG 0.593167 tig0023402:-24847 Msa1408620:CDS
CCTGCAAATATCAACAATGG+AGG 0.613468 tig0023402:+29171 None:intergenic
ACTAAGCATTCCACCAACCC+CGG 0.621472 tig0023402:+29796 None:intergenic
GAAGAGAATGGGAACAAGAG+AGG 0.622376 tig0023402:-30719 None:intergenic
TGTAATGAATGACACATGAA+AGG 0.625094 tig0023402:+24768 None:intergenic
CTGCAAATATCAACAATGGA+GGG 0.626439 tig0023402:+29172 None:intergenic
GCTCCTGCAAATATCAACAA+TGG 0.627454 tig0023402:+29168 None:intergenic
CTTCAGAGCCTCTTCAGATG+CGG 0.642723 tig0023402:+24794 None:intergenic
CCTGCAGAAATACCGTCTTG+TGG 0.651087 tig0023402:-24686 Msa1408620:three_prime_UTR
AATCCTAACCATCCACAAGA+CGG 0.662743 tig0023402:+24674 None:intergenic
ATCGTCTGAAAGGACCGAAG+TGG 0.670749 tig0023402:-29418 Msa1408620:CDS
GGTTGAATAGGTTGGCTCCG+GGG 0.673049 tig0023402:-29813 Msa1408620:intron
AACGCCTGCTCCCTAAAACA+GGG 0.697601 tig0023402:+24535 None:intergenic
ATAATGTGATGCACTCGAGG+AGG 0.699813 tig0023402:+24868 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATACTATTTAATTTGTTAA+TGG - tig0023402:25691-25710 Msa1408620:intron 10.0%
!!! TAATTTCATTTTATACTTAT+CGG + tig0023402:26760-26779 None:intergenic 10.0%
!! AATATATTATAAATTAGCAA+CGG - tig0023402:28469-28488 Msa1408620:intron 10.0%
!!! TGTTAATATCAATAAGATTT+TGG - tig0023402:25060-25079 Msa1408620:intron 15.0%
!!! GTTAATATCAATAAGATTTT+GGG - tig0023402:25061-25080 Msa1408620:intron 15.0%
!! TAATTCACGTTATAATTATT+TGG - tig0023402:25586-25605 Msa1408620:intron 15.0%
!! AATTCACGTTATAATTATTT+GGG - tig0023402:25587-25606 Msa1408620:intron 15.0%
!! AAATATTGCTCTTTAATATT+TGG - tig0023402:25746-25765 Msa1408620:intron 15.0%
!! TGATTCAATTAACAAAAAAT+GGG + tig0023402:26214-26233 None:intergenic 15.0%
!! ATGATTCAATTAACAAAAAA+TGG + tig0023402:26215-26234 None:intergenic 15.0%
!!! AGATTTTTAACAAAACTAAT+TGG - tig0023402:26270-26289 Msa1408620:intron 15.0%
!! TTACTTCTATTAAAATAATG+AGG - tig0023402:26777-26796 Msa1408620:intron 15.0%
!! TACTTCTATTAAAATAATGA+GGG - tig0023402:26778-26797 Msa1408620:intron 15.0%
!!! TTTGTATTATTCAGTTTTTT+TGG - tig0023402:27136-27155 Msa1408620:intron 15.0%
!! ACATATAAATTGTTTCAATA+TGG + tig0023402:27411-27430 None:intergenic 15.0%
!! AAAAAAAAAAATGAAAATGC+AGG - tig0023402:27492-27511 Msa1408620:intron 15.0%
!!! ATATTTTTCACATAAAAACT+TGG - tig0023402:28783-28802 Msa1408620:intron 15.0%
!!! CGTTTTAAAAAAATCAAATT+GGG + tig0023402:28992-29011 None:intergenic 15.0%
!!! ACGTTTTAAAAAAATCAAAT+TGG + tig0023402:28993-29012 None:intergenic 15.0%
!! TCTATTTATCTCTATAAATA+GGG + tig0023402:29574-29593 None:intergenic 15.0%
!!! CTGATTTTTCTATTTATTTA+GGG + tig0023402:29602-29621 None:intergenic 15.0%
!! TTAAATATCCAATAGTAATA+TGG - tig0023402:30253-30272 Msa1408620:intron 15.0%
!!! TTTTGTTTTGATTTGTGTTT+AGG - tig0023402:24823-24842 Msa1408620:CDS 20.0%
!!! ATGAAAATACATTTTTTCGT+TGG + tig0023402:24934-24953 None:intergenic 20.0%
!!! ATGGTAATTTTACTTTTGTT+TGG - tig0023402:25457-25476 Msa1408620:intron 20.0%
!! ATCATATTGTTTATTGATAG+TGG - tig0023402:25662-25681 Msa1408620:intron 20.0%
!! ATTTAAACAAAGTAGGTATT+TGG + tig0023402:25730-25749 None:intergenic 20.0%
!! CCAATTTATTATATGTTTCT+CGG - tig0023402:26100-26119 Msa1408620:intron 20.0%
!! ATTCAATTAACAAAAAATGG+GGG + tig0023402:26212-26231 None:intergenic 20.0%
!! GATTCAATTAACAAAAAATG+GGG + tig0023402:26213-26232 None:intergenic 20.0%
!!! TTTTAACAAAACTAATTGGA+TGG - tig0023402:26274-26293 Msa1408620:intron 20.0%
!!! AGGATTTTATGAATCATAAT+GGG + tig0023402:26469-26488 None:intergenic 20.0%
!!! TAGGATTTTATGAATCATAA+TGG + tig0023402:26470-26489 None:intergenic 20.0%
!! TATAGCAAATGAATTTAAAG+CGG - tig0023402:26662-26681 Msa1408620:intron 20.0%
!! GTATTATAAATAAAATGCAG+AGG - tig0023402:28565-28584 Msa1408620:intron 20.0%
!!! CGTATTTGTTTTTTTTTTGA+AGG - tig0023402:29010-29029 Msa1408620:intron 20.0%
!! TTTCCTTATAATTTACAACA+TGG - tig0023402:29175-29194 Msa1408620:CDS 20.0%
!!! ATAATTTTAGAGTATCTCTT+AGG - tig0023402:29285-29304 Msa1408620:intron 20.0%
!! CAAAAGACTAAATACTTATA+GGG + tig0023402:29378-29397 None:intergenic 20.0%
!! ACAAAAGACTAAATACTTAT+AGG + tig0023402:29379-29398 None:intergenic 20.0%
!!! TTGTGGGATTTTTTATAAAA+GGG + tig0023402:29441-29460 None:intergenic 20.0%
!! TCATCATCAATAATATTCAA+AGG + tig0023402:29514-29533 None:intergenic 20.0%
!! GTCTATTTATCTCTATAAAT+AGG + tig0023402:29575-29594 None:intergenic 20.0%
!!! CCTGATTTTTCTATTTATTT+AGG + tig0023402:29603-29622 None:intergenic 20.0%
!! CCTAAATAAATAGAAAAATC+AGG - tig0023402:29600-29619 Msa1408620:intron 20.0%
!! AGTATCTTATATTATCTCTT+AGG + tig0023402:29658-29677 None:intergenic 20.0%
!!! ATTATCATAAGTTATTTCCT+AGG + tig0023402:29699-29718 None:intergenic 20.0%
!! AAATAAATTTCCAGAATAGT+AGG - tig0023402:29752-29771 Msa1408620:intron 20.0%
!! TTTCAACAATAAAACAACTT+TGG + tig0023402:29805-29824 None:intergenic 20.0%
!!! TTGTTTTATTGTTGAAAGAT+GGG - tig0023402:29808-29827 Msa1408620:intron 20.0%
!! TTTTGCAATCATTTGTTTGT+AGG - tig0023402:24732-24751 Msa1408620:three_prime_UTR 25.0%
!!! TGTTTTTTCATAAACTACCT+TGG - tig0023402:24958-24977 Msa1408620:intron 25.0%
! TTATCATGATATCTGATAAC+TGG + tig0023402:25024-25043 None:intergenic 25.0%
!!! AGATTTTGGGATTCAATTTT+AGG - tig0023402:25074-25093 Msa1408620:intron 25.0%
!!! GTATGTATAAGCTATTTCTT+TGG - tig0023402:25158-25177 Msa1408620:intron 25.0%
!! TTAAATGTGATGTACTGTTT+TGG - tig0023402:25508-25527 Msa1408620:intron 25.0%
! GAGCAATATTTAAACAAAGT+AGG + tig0023402:25737-25756 None:intergenic 25.0%
! CTCTTTAATATTTGGTTGTA+GGG - tig0023402:25754-25773 Msa1408620:intron 25.0%
! TAGATAACTGTAATATGCAA+AGG + tig0023402:25863-25882 None:intergenic 25.0%
! CCGAGAAACATATAATAAAT+TGG + tig0023402:26103-26122 None:intergenic 25.0%
! AATGTTTGACAACTATTGTA+TGG - tig0023402:26151-26170 Msa1408620:intron 25.0%
!!! AATTGAATCATGTTCTAGAA+TGG - tig0023402:26224-26243 Msa1408620:intron 25.0%
!!! ACGTCTTTTTTCATTCTTTA+AGG + tig0023402:26407-26426 None:intergenic 25.0%
!!! GCTTTAAATTCATTTGCTAT+AGG + tig0023402:26663-26682 None:intergenic 25.0%
! AAAAAAAATGAAAATGCAGG+AGG - tig0023402:27495-27514 Msa1408620:intron 25.0%
! TGTCACAACTCATAATATAA+AGG - tig0023402:27543-27562 Msa1408620:intron 25.0%
! GTCACAACTCATAATATAAA+GGG - tig0023402:27544-27563 Msa1408620:intron 25.0%
!!! AATCTTTCTGTTTCAAGTTA+TGG - tig0023402:28319-28338 Msa1408620:intron 25.0%
!!! ATCTTTCTGTTTCAAGTTAT+GGG - tig0023402:28320-28339 Msa1408620:intron 25.0%
! GCAATAAAACATAAAACACT+AGG + tig0023402:28837-28856 None:intergenic 25.0%
!!! GTATTTGCTGAATGTTTTAA+TGG - tig0023402:28896-28915 Msa1408620:intron 25.0%
! GTTCTATCAAAAACCATATT+TGG + tig0023402:29043-29062 None:intergenic 25.0%
!! TTGTTGTTGAAAAACGTATT+TGG - tig0023402:29130-29149 Msa1408620:intron 25.0%
! CAACCATGTTGTAAATTATA+AGG + tig0023402:29181-29200 None:intergenic 25.0%
! ATAGTTTAACACCATTAATC+AGG + tig0023402:29204-29223 None:intergenic 25.0%
!!! AGTATCTTAAGTTGTTTTCT+AGG - tig0023402:29254-29273 Msa1408620:intron 25.0%
!!! TGTGGGATTTTTTATAAAAG+GGG + tig0023402:29440-29459 None:intergenic 25.0%
!!! GTTGTGGGATTTTTTATAAA+AGG + tig0023402:29442-29461 None:intergenic 25.0%
! ATCTCTATAAATAGGGATTA+GGG + tig0023402:29567-29586 None:intergenic 25.0%
! TATCTCTATAAATAGGGATT+AGG + tig0023402:29568-29587 None:intergenic 25.0%
!!! GTTGTTTTATTGTTGAAAGA+TGG - tig0023402:29807-29826 Msa1408620:intron 25.0%
!! TTGAAAGATGGGTTTAAATA+AGG - tig0023402:29819-29838 Msa1408620:intron 25.0%
!! TGAAAGATGGGTTTAAATAA+GGG - tig0023402:29820-29839 Msa1408620:intron 25.0%
! AACTGAATATCTACATTAGA+AGG - tig0023402:30144-30163 Msa1408620:intron 25.0%
!! TAACCTCATTTTGAATAGTA+TGG - tig0023402:30651-30670 Msa1408620:intron 25.0%
AAGAAGAAGAGAGAAACTAA+CGG + tig0023402:24626-24645 None:intergenic 30.0%
ATCATTTGTTTGTAGGAAAG+AGG - tig0023402:24739-24758 Msa1408620:three_prime_UTR 30.0%
! ATTTGTGTTTAGGATCAGTT+TGG - tig0023402:24833-24852 Msa1408620:CDS 30.0%
! ATTCAATTTTAGGCTGTGTT+TGG - tig0023402:25084-25103 Msa1408620:intron 30.0%
! ACTGTTTTCATAAGCTATCT+TGG - tig0023402:25225-25244 Msa1408620:intron 30.0%
! TCTTTATTTGCTTGTTCGTT+TGG - tig0023402:25377-25396 Msa1408620:intron 30.0%
GCTCTTTAATATTTGGTTGT+AGG - tig0023402:25753-25772 Msa1408620:intron 30.0%
!! TTCAGACGATTTTGAAGATA+TGG + tig0023402:25783-25802 None:intergenic 30.0%
TATCTTCAAAATCGTCTGAA+AGG - tig0023402:25783-25802 Msa1408620:intron 30.0%
TGACAAAATGTAATGCATAG+TGG - tig0023402:26627-26646 Msa1408620:intron 30.0%
ATAATTAGCTGATAGCAGAT+AGG - tig0023402:26686-26705 Msa1408620:intron 30.0%
! GTGATTGCATCTTATTTGTT+CGG - tig0023402:27022-27041 Msa1408620:intron 30.0%
TAAAATCAAGCATAGCAATG+TGG + tig0023402:27228-27247 None:intergenic 30.0%
! ACATTGCTATGCTTGATTTT+AGG - tig0023402:27227-27246 Msa1408620:intron 30.0%
GATTCAAGTCAATGTCATTA+AGG + tig0023402:27270-27289 None:intergenic 30.0%
AAACTACATCTTACAATGTC+TGG + tig0023402:27668-27687 None:intergenic 30.0%
AGACATTGTAAGATGTAGTT+TGG - tig0023402:27667-27686 Msa1408620:intron 30.0%
TCGTTCTTAGACTTTATCTT+AGG + tig0023402:28189-28208 None:intergenic 30.0%
AACTTCTATGTAACTGCTAT+AGG - tig0023402:28536-28555 Msa1408620:intron 30.0%
ACTTCTATGTAACTGCTATA+GGG - tig0023402:28537-28556 Msa1408620:intron 30.0%
ATAAAATGCAGAGGAAAAGA+AGG - tig0023402:28574-28593 Msa1408620:intron 30.0%
TAAAATGCAGAGGAAAAGAA+GGG - tig0023402:28575-28594 Msa1408620:intron 30.0%
! GTAAAATAAGGGTATGTGAT+AGG + tig0023402:28736-28755 None:intergenic 30.0%
! GACTTGCATTGGTAAAATAA+GGG + tig0023402:28747-28766 None:intergenic 30.0%
! TGACTTGCATTGGTAAAATA+AGG + tig0023402:28748-28767 None:intergenic 30.0%
! TTTTACCAATGCAAGTCAAT+AGG - tig0023402:28750-28769 Msa1408620:intron 30.0%
AGGAAAACATGTTAAAGTCA+AGG + tig0023402:28812-28831 None:intergenic 30.0%
AAAACATAAAACACTAGGCA+AGG + tig0023402:28832-28851 None:intergenic 30.0%
TGAAGGAAAAACTCCAAATA+TGG - tig0023402:29027-29046 Msa1408620:intron 30.0%
! TGGTTTTTGATAGAACACTA+TGG - tig0023402:29047-29066 Msa1408620:intron 30.0%
!!! GTGGGATTTTTTATAAAAGG+GGG + tig0023402:29439-29458 None:intergenic 30.0%
! TCTGTAGGATTTTGGATAAA+AGG - tig0023402:29472-29491 Msa1408620:intron 30.0%
TGATAGTAGCTTGATACAAA+AGG - tig0023402:29536-29555 Msa1408620:intron 30.0%
CTAGGATCAGTTCATAATTT+GGG + tig0023402:29681-29700 None:intergenic 30.0%
TTGTAAAAGACCTACTATTC+TGG + tig0023402:29765-29784 None:intergenic 30.0%
GAAATATAAGTTGTTAGCTC+AGG - tig0023402:29873-29892 Msa1408620:intron 30.0%
GAGTCACATTCTGATAAAAA+AGG + tig0023402:29980-29999 None:intergenic 30.0%
! TTTTATCAGAATGTGACTCA+TGG - tig0023402:29981-30000 Msa1408620:intron 30.0%
TTGAAGTTGTGTGTATATGA+TGG - tig0023402:30049-30068 Msa1408620:intron 30.0%
AATAGCAGTGTAAACAAAGA+TGG + tig0023402:30110-30129 None:intergenic 30.0%
GTAGATATTCAGTTTAAACC+AGG + tig0023402:30138-30157 None:intergenic 30.0%
!!! GTGTTGTGTTTTAGTTTCTT+CGG - tig0023402:30180-30199 Msa1408620:intron 30.0%
!!! TGTTGTGTTTTAGTTTCTTC+GGG - tig0023402:30181-30200 Msa1408620:intron 30.0%
ACATGCAACCATATTACTAT+TGG + tig0023402:30264-30283 None:intergenic 30.0%
TGTAATGAATGACACATGAA+AGG + tig0023402:30446-30465 None:intergenic 30.0%
GAGAGAAACTAACGGAATTA+GGG + tig0023402:24618-24637 None:intergenic 35.0%
AGAGAGAAACTAACGGAATT+AGG + tig0023402:24619-24638 None:intergenic 35.0%
TATTCTTCATAAGCTTGCCA+AGG + tig0023402:24978-24997 None:intergenic 35.0%
ATAAGAGCTAATGAGACTGT+TGG + tig0023402:25300-25319 None:intergenic 35.0%
! ACAGTCTCATTAGCTCTTAT+TGG - tig0023402:25300-25319 Msa1408620:intron 35.0%
GCAGTTCATGGTTTGAATAA+TGG - tig0023402:25438-25457 Msa1408620:intron 35.0%
TGGGGTATGTAGAACTTTAA+TGG - tig0023402:25830-25849 Msa1408620:intron 35.0%
GATGTCTGTATCATAGAAGT+TGG - tig0023402:25904-25923 Msa1408620:intron 35.0%
CATTGATGTAACATAGAGCT+TGG - tig0023402:25969-25988 Msa1408620:intron 35.0%
CTGCAAATATCAACAATGGA+GGG + tig0023402:26042-26061 None:intergenic 35.0%
GTGTGCACAGTAAAAATTGA+AGG + tig0023402:26126-26145 None:intergenic 35.0%
GAGTTGCTTCATGAAATCAT+AGG - tig0023402:26182-26201 Msa1408620:intron 35.0%
!! TGAATCATGTTCTAGAATGG+TGG - tig0023402:26227-26246 Msa1408620:intron 35.0%
ATATTTCAGCCATAGTAGGT+CGG + tig0023402:26331-26350 None:intergenic 35.0%
ACAGATATTTCAGCCATAGT+AGG + tig0023402:26335-26354 None:intergenic 35.0%
TACTATGGCTGAAATATCTG+TGG - tig0023402:26334-26353 Msa1408620:intron 35.0%
TGAAATATCTGTGGAAGGTA+TGG - tig0023402:26343-26362 Msa1408620:intron 35.0%
ATGGGTTTGACTGGTAATTA+GGG + tig0023402:26451-26470 None:intergenic 35.0%
! AATGGGTTTGACTGGTAATT+AGG + tig0023402:26452-26471 None:intergenic 35.0%
!! TGAATCATAATGGGTTTGAC+TGG + tig0023402:26460-26479 None:intergenic 35.0%
! TTAGGACTTGACTGGTTATT+AGG + tig0023402:26489-26508 None:intergenic 35.0%
! AGACTCTATCACATCTTTTG+CGG - tig0023402:26527-26546 Msa1408620:intron 35.0%
! ATTGCATCTTATTTGTTCGG+TGG - tig0023402:27025-27044 Msa1408620:intron 35.0%
! TTATTTGTTCGGTGGTTCTA+GGG - tig0023402:27033-27052 Msa1408620:intron 35.0%
GCTGCTAATAGTGATACTTT+AGG - tig0023402:27055-27074 Msa1408620:intron 35.0%
!!! GCTATGCTTGATTTTAGGTT+TGG - tig0023402:27232-27251 Msa1408620:intron 35.0%
TTGTAAGATGTAGTTTGGAG+AGG - tig0023402:27672-27691 Msa1408620:intron 35.0%
! TGGCTGTTTGAAATTGTTAG+TGG + tig0023402:27829-27848 None:intergenic 35.0%
ATCTCTACCTCTCAATTATG+AGG + tig0023402:27923-27942 None:intergenic 35.0%
GGCACATCTAACAAATTTAG+AGG + tig0023402:27999-28018 None:intergenic 35.0%
TGTTAGATGTGCCACATAAA+TGG - tig0023402:28006-28025 Msa1408620:intron 35.0%
!! ACCCTCTAAAATGTTCTAGT+GGG + tig0023402:28035-28054 None:intergenic 35.0%
ATTGCTAACAGTATGATTGC+TGG + tig0023402:28083-28102 None:intergenic 35.0%
GAACGAGAAATTTCCATTGT+CGG - tig0023402:28203-28222 Msa1408620:intron 35.0%
GATTGCGTTGTACATGAAAT+AGG + tig0023402:28303-28322 None:intergenic 35.0%
! GACAAGGTGAATCTTTAGAA+GGG - tig0023402:28379-28398 Msa1408620:intron 35.0%
! ACAAGGTGAATCTTTAGAAG+GGG - tig0023402:28380-28399 Msa1408620:intron 35.0%
! ATTGGGATAAAGGATTGGTA+GGG - tig0023402:28607-28626 Msa1408620:intron 35.0%
CCAAGACTCTTGAATTTCTT+CGG - tig0023402:28666-28685 Msa1408620:intron 35.0%
!! AGAAACCTATTGACTTGCAT+TGG + tig0023402:28758-28777 None:intergenic 35.0%
CCTAGGATCAGTTCATAATT+TGG + tig0023402:29682-29701 None:intergenic 35.0%
CCAAATTATGAACTGATCCT+AGG - tig0023402:29679-29698 Msa1408620:intron 35.0%
! CAATTTATGCTCAAGCATTG+TGG - tig0023402:29947-29966 Msa1408620:intron 35.0%
!! ATTCGAATCAAGTATTGGTG+TGG + tig0023402:30023-30042 None:intergenic 35.0%
! ACACCAATACTTGATTCGAA+TGG - tig0023402:30022-30041 Msa1408620:intron 35.0%
GTTCCATTCGAATCAAGTAT+TGG + tig0023402:30028-30047 None:intergenic 35.0%
! TGCTAATAGCACCATTGTTT+TGG - tig0023402:30082-30101 Msa1408620:intron 35.0%
! TTACACTGCTATTGATTACC+TGG - tig0023402:30117-30136 Msa1408620:intron 35.0%
TTCGGGCAAATAAGACTTAA+AGG - tig0023402:30198-30217 Msa1408620:intron 35.0%
TGTAGTTCTCTTCAATATGC+CGG + tig0023402:30386-30405 None:intergenic 35.0%
! TGTGTCATTCATTACATGCA+TGG - tig0023402:30450-30469 Msa1408620:intron 35.0%
ATTACATGCATGGCACATTA+CGG - tig0023402:30460-30479 Msa1408620:intron 35.0%
GCACCATACTATTCAAAATG+AGG + tig0023402:30657-30676 None:intergenic 35.0%
AGGTATACGAAGAGAAACTG+AGG - tig0023402:24512-24531 Msa1408620:three_prime_UTR 40.0%
TACGAAGAGAAACTGAGGAA+CGG - tig0023402:24517-24536 Msa1408620:three_prime_UTR 40.0%
ACGTTGCAAGAGAGAAAAAG+AGG + tig0023402:24649-24668 None:intergenic 40.0%
GTTTGTAGGAAAGAGGTGAA+TGG - tig0023402:24746-24765 Msa1408620:three_prime_UTR 40.0%
AGCGGTTGCATCATGTAAAA+CGG + tig0023402:24782-24801 None:intergenic 40.0%
GGCAAGCTTATGAAGAATAC+AGG - tig0023402:24979-24998 Msa1408620:intron 40.0%
GCTTGTTCGTTTGGTTGAAT+AGG - tig0023402:25386-25405 Msa1408620:intron 40.0%
GTTCGTTTGGTTGAATAGGT+TGG - tig0023402:25390-25409 Msa1408620:intron 40.0%
! TCACGACACGTTCTTTTCTA+CGG + tig0023402:25555-25574 None:intergenic 40.0%
TCAACAATGGAGGGATCTAT+GGG + tig0023402:26033-26052 None:intergenic 40.0%
ATCAACAATGGAGGGATCTA+TGG + tig0023402:26034-26053 None:intergenic 40.0%
CCTGCAAATATCAACAATGG+AGG + tig0023402:26043-26062 None:intergenic 40.0%
CCTCCATTGTTGATATTTGC+AGG - tig0023402:26040-26059 Msa1408620:intron 40.0%
GCTCCTGCAAATATCAACAA+TGG + tig0023402:26046-26065 None:intergenic 40.0%
TCTGCCACAACATACAACTA+TGG + tig0023402:26253-26272 None:intergenic 40.0%
AAACTAATTGGATGGCCATG+TGG - tig0023402:26282-26301 Msa1408620:intron 40.0%
ATGGCTGAAATATCTGTGGA+AGG - tig0023402:26338-26357 Msa1408620:intron 40.0%
! AATATCTGTGGAAGGTATGG+TGG - tig0023402:26346-26365 Msa1408620:intron 40.0%
TAGCCATCAAGATCAAGAGA+CGG + tig0023402:26603-26622 None:intergenic 40.0%
GTCTTTCTCTCACAAACTAG+TGG + tig0023402:26900-26919 None:intergenic 40.0%
! CTTATTTGTTCGGTGGTTCT+AGG - tig0023402:27032-27051 Msa1408620:intron 40.0%
ATGTGGCATATGACACACTA+TGG + tig0023402:27211-27230 None:intergenic 40.0%
AACGACATCTACAGATGAGT+TGG - tig0023402:27696-27715 Msa1408620:intron 40.0%
GATGATTGGATGCAGTTTCT+TGG + tig0023402:27761-27780 None:intergenic 40.0%
AGTTGATTGTGGCTGATGAT+TGG + tig0023402:27775-27794 None:intergenic 40.0%
TCAGCCACAATCAACTTTGA+AGG - tig0023402:27779-27798 Msa1408620:intron 40.0%
! CTCTCCTTCAAAGTTGATTG+TGG + tig0023402:27786-27805 None:intergenic 40.0%
!! TGGCTTTGTCCATGATCTAT+GGG + tig0023402:27886-27905 None:intergenic 40.0%
!! ATGGCTTTGTCCATGATCTA+TGG + tig0023402:27887-27906 None:intergenic 40.0%
CAATTATGAGGTTTCACCTG+TGG + tig0023402:27911-27930 None:intergenic 40.0%
GGTGAAACCTCATAATTGAG+AGG - tig0023402:27913-27932 Msa1408620:intron 40.0%
AGAGGTAGAGATGATGTAGA+TGG - tig0023402:27931-27950 Msa1408620:intron 40.0%
ATGGAGGTCAATATGACTTC+AGG - tig0023402:27950-27969 Msa1408620:intron 40.0%
TGGAGGTCAATATGACTTCA+GGG - tig0023402:27951-27970 Msa1408620:intron 40.0%
TCAATATGACTTCAGGGTTC+AGG - tig0023402:27957-27976 Msa1408620:intron 40.0%
TAGATGTGCCACATAAATGG+CGG - tig0023402:28009-28028 Msa1408620:intron 40.0%
! GCCCACTAGAACATTTTAGA+GGG - tig0023402:28031-28050 Msa1408620:intron 40.0%
!! CACCCTCTAAAATGTTCTAG+TGG + tig0023402:28036-28055 None:intergenic 40.0%
! TTTTGGTCTAACCATTCTGG+TGG + tig0023402:28111-28130 None:intergenic 40.0%
! TCCCAGATCAAATTTGCTCA+CGG + tig0023402:28271-28290 None:intergenic 40.0%
TTGTGTTATCCTTCACCTTG+AGG - tig0023402:28357-28376 Msa1408620:intron 40.0%
AAAGATTCACCTTGTCCTCA+AGG + tig0023402:28375-28394 None:intergenic 40.0%
GGACAAGGTGAATCTTTAGA+AGG - tig0023402:28378-28397 Msa1408620:intron 40.0%
! CAAGGTGAATCTTTAGAAGG+GGG - tig0023402:28381-28400 Msa1408620:intron 40.0%
! AAGGTGAATCTTTAGAAGGG+GGG - tig0023402:28382-28401 Msa1408620:intron 40.0%
TGTTGGCAATAGGACTCATA+AGG - tig0023402:28411-28430 Msa1408620:intron 40.0%
GTTGGCAATAGGACTCATAA+GGG - tig0023402:28412-28431 Msa1408620:intron 40.0%
GTAACTGCTATCTGCAGTAA+AGG - tig0023402:28503-28522 Msa1408620:intron 40.0%
! GATTGGGATAAAGGATTGGT+AGG - tig0023402:28606-28625 Msa1408620:intron 40.0%
CCGAAGAAATTCAAGAGTCT+TGG + tig0023402:28669-28688 None:intergenic 40.0%
TGTGAAGCATGCAATGAAGT+TGG - tig0023402:28946-28965 Msa1408620:intron 40.0%
CAACATGGTTGCCTGATTAA+TGG - tig0023402:29190-29209 Msa1408620:intron 40.0%
ACAGAGCATGTTGAAGTTGT+GGG + tig0023402:29457-29476 None:intergenic 40.0%
TACAGAGCATGTTGAAGTTG+TGG + tig0023402:29458-29477 None:intergenic 40.0%
ACAACTTCAACATGCTCTGT+AGG - tig0023402:29457-29476 Msa1408620:intron 40.0%
! CAACATGCTCTGTAGGATTT+TGG - tig0023402:29464-29483 Msa1408620:intron 40.0%
AGAATGTGACTCATGGTTCA+TGG - tig0023402:29988-30007 Msa1408620:intron 40.0%
CAAAGATGGCACCAAAACAA+TGG + tig0023402:30096-30115 None:intergenic 40.0%
! TGGTTGCATGTGAGATTTTC+AGG - tig0023402:30273-30292 Msa1408620:intron 40.0%
GTAGTTCTCTTCAATATGCC+GGG + tig0023402:30385-30404 None:intergenic 40.0%
AATCCTAACCATCCACAAGA+CGG + tig0023402:30540-30559 None:intergenic 40.0%
! ATAGTATGGTGCCCTGTTTT+AGG - tig0023402:30665-30684 Msa1408620:intron 40.0%
! TAGTATGGTGCCCTGTTTTA+GGG - tig0023402:30666-30685 Msa1408620:intron 40.0%
! GGTTTAGGGTTGGATCAAAG+TGG + tig0023402:24549-24568 None:intergenic 45.0%
TTTGATCCAACCCTAAACCC+TGG - tig0023402:24550-24569 Msa1408620:three_prime_UTR 45.0%
TGAGAAGAGAGAGACAACGA+GGG + tig0023402:24594-24613 None:intergenic 45.0%
TTGAGAAGAGAGAGACAACG+AGG + tig0023402:24595-24614 None:intergenic 45.0%
GCGGTTGCATCATGTAAAAC+GGG + tig0023402:24781-24800 None:intergenic 45.0%
AAGAGAAGAACTCACGACAG+CGG + tig0023402:24800-24819 None:intergenic 45.0%
! TTGGTTGAATAGGTTGGCTC+CGG - tig0023402:25396-25415 Msa1408620:intron 45.0%
GGAATGCTTAGTGCAGTTCA+TGG - tig0023402:25426-25445 Msa1408620:intron 45.0%
CTACATACCCCAACCACAAA+AGG + tig0023402:25822-25841 None:intergenic 45.0%
CAACAATGGAGGGATCTATG+GGG + tig0023402:26032-26051 None:intergenic 45.0%
GTGGCCATAGTTGTATGTTG+TGG - tig0023402:26246-26265 Msa1408620:intron 45.0%
ATGTGGTGGCAACCTTTACA+CGG - tig0023402:26299-26318 Msa1408620:intron 45.0%
CAGCATAGATGTGCACAGTT+AGG + tig0023402:26507-26526 None:intergenic 45.0%
CGGATGAGCAGAGAAGAAAA+GGG + tig0023402:26583-26602 None:intergenic 45.0%
ACGGATGAGCAGAGAAGAAA+AGG + tig0023402:26584-26603 None:intergenic 45.0%
CATCCGTCTCTTGATCTTGA+TGG - tig0023402:26597-26616 Msa1408620:intron 45.0%
AGTTGCTAGTTCGCATGCTT+TGG - tig0023402:27185-27204 Msa1408620:intron 45.0%
TCCATGTCGTCAAACTCAAG+AGG - tig0023402:27288-27307 Msa1408620:intron 45.0%
TAATCCTACCCTTGTGAACC+GGG + tig0023402:27317-27336 None:intergenic 45.0%
CTAATCCTACCCTTGTGAAC+CGG + tig0023402:27318-27337 None:intergenic 45.0%
! GACATCTACAGATGAGTTGG+AGG - tig0023402:27699-27718 Msa1408620:intron 45.0%
TTTCAAACAGCCACCTTGAG+AGG - tig0023402:27836-27855 Msa1408620:intron 45.0%
GCTTTGTCCATGATCTATGG+GGG + tig0023402:27884-27903 None:intergenic 45.0%
! GGCTTTGTCCATGATCTATG+GGG + tig0023402:27885-27904 None:intergenic 45.0%
GGTAGAGATGATGTAGATGG+AGG - tig0023402:27934-27953 Msa1408620:intron 45.0%
TATGACTTCAGGGTTCAGGT+TGG - tig0023402:27961-27980 Msa1408620:intron 45.0%
! GGCCCACTAGAACATTTTAG+AGG - tig0023402:28030-28049 Msa1408620:intron 45.0%
! GGCTTTTGGTCTAACCATTC+TGG + tig0023402:28114-28133 None:intergenic 45.0%
ATGTCCAGGGGTTTCAACAA+CGG + tig0023402:28138-28157 None:intergenic 45.0%
TTGTTGAAACCCCTGGACAT+CGG - tig0023402:28138-28157 Msa1408620:intron 45.0%
GACATTGTCGTCCCAAAAAC+CGG - tig0023402:28227-28246 Msa1408620:intron 45.0%
!! TCCTCTAGTGACCGGTTTTT+GGG + tig0023402:28241-28260 None:intergenic 45.0%
AGCCGTGAGCAAATTTGATC+TGG - tig0023402:28266-28285 Msa1408620:intron 45.0%
GCCGTGAGCAAATTTGATCT+GGG - tig0023402:28267-28286 Msa1408620:intron 45.0%
!! TGTTTCAAGTTATGGGACCC+TGG - tig0023402:28327-28346 Msa1408620:intron 45.0%
GATAACACAACTGTCCACCA+GGG + tig0023402:28347-28366 None:intergenic 45.0%
TATCCTTCACCTTGAGGACA+AGG - tig0023402:28363-28382 Msa1408620:intron 45.0%
! AGGTGAATCTTTAGAAGGGG+GGG - tig0023402:28383-28402 Msa1408620:intron 45.0%
!! AGAGGAAAAGAAGGGCATTC+AGG - tig0023402:28583-28602 Msa1408620:intron 45.0%
!! GAGGAAAAGAAGGGCATTCA+GGG - tig0023402:28584-28603 Msa1408620:intron 45.0%
!! AAAGAAGGGCATTCAGGGAT+TGG - tig0023402:28589-28608 Msa1408620:intron 45.0%
!! AAGAAGGGCATTCAGGGATT+GGG - tig0023402:28590-28609 Msa1408620:intron 45.0%
GCATTCAGGGATTGGGATAA+AGG - tig0023402:28597-28616 Msa1408620:intron 45.0%
CAGGGATTGGGATAAAGGAT+TGG - tig0023402:28602-28621 Msa1408620:intron 45.0%
AGACCAAGCTCTTGAATGCT+TGG - tig0023402:28632-28651 Msa1408620:intron 45.0%
CAAGCTCTTGAATGCTTGGA+GGG - tig0023402:28636-28655 Msa1408620:intron 45.0%
AAGCTCTTGAATGCTTGGAG+GGG - tig0023402:28637-28656 Msa1408620:intron 45.0%
! AAGCCTTATCCCACTAAGTG+GGG + tig0023402:29096-29115 None:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+GGG + tig0023402:29097-29116 None:intergenic 45.0%
! ACTGTGAGTTGAGCGAACTT+TGG + tig0023402:30309-30328 None:intergenic 45.0%
ATAATGTGATGCACTCGAGG+AGG + tig0023402:30346-30365 None:intergenic 45.0%
TCCTCGAGTGCATCACATTA+TGG - tig0023402:30345-30364 Msa1408620:intron 45.0%
TCCATAATGTGATGCACTCG+AGG + tig0023402:30349-30368 None:intergenic 45.0%
ATGGAATCTCTCTTCTCACC+CGG - tig0023402:30364-30383 Msa1408620:intron 45.0%
ATGCATGGCACATTACGGTT+TGG - tig0023402:30465-30484 Msa1408620:intron 45.0%
CAGAAATACCGTCTTGTGGA+TGG - tig0023402:30529-30548 Msa1408620:intron 45.0%
ATACCGTCTTGTGGATGGTT+AGG - tig0023402:30534-30553 Msa1408620:intron 45.0%
GTGGATGGTTAGGATTTCTG+AGG - tig0023402:30544-30563 Msa1408620:intron 45.0%
! TGGTTGAATAGGTTGGCTCC+GGG - tig0023402:25397-25416 Msa1408620:intron 50.0%
ACTAAGCATTCCACCAACCC+CGG + tig0023402:25418-25437 None:intergenic 50.0%
ATCGTCTGAAAGGACCGAAG+TGG - tig0023402:25793-25812 Msa1408620:intron 50.0%
ACCACAAAAGGCAGCCACTT+CGG + tig0023402:25810-25829 None:intergenic 50.0%
! AAGTGGCTGCCTTTTGTGGT+TGG - tig0023402:25810-25829 Msa1408620:intron 50.0%
! AGTGGCTGCCTTTTGTGGTT+GGG - tig0023402:25811-25830 Msa1408620:intron 50.0%
CTAATTGGATGGCCATGTGG+TGG - tig0023402:26285-26304 Msa1408620:intron 50.0%
GTGTAAAGGTTGCCACCACA+TGG + tig0023402:26300-26319 None:intergenic 50.0%
TATGGTGGTCGTGGTTGACA+TGG - tig0023402:26361-26380 Msa1408620:intron 50.0%
CGTGGTTGACATGGCTGAAA+TGG - tig0023402:26370-26389 Msa1408620:intron 50.0%
GTGCACAGTTAGGACTTGAC+TGG + tig0023402:26497-26516 None:intergenic 50.0%
GCCTCTTGAGTTTGACGACA+TGG + tig0023402:27292-27311 None:intergenic 50.0%
GTCAAACTCAAGAGGCTACC+CGG - tig0023402:27296-27315 Msa1408620:intron 50.0%
CGGTTCACAAGGGTAGGATT+AGG - tig0023402:27316-27335 Msa1408620:intron 50.0%
AAGTCACGTAACGTGTGCGA+TGG - tig0023402:27339-27358 Msa1408620:intron 50.0%
AATGTCTGGCTAGCAGCTGA+TGG + tig0023402:27654-27673 None:intergenic 50.0%
AAACAGCCACCTTGAGAGGT+AGG - tig0023402:27840-27859 Msa1408620:intron 50.0%
TATCTGTGGCCTACCTCTCA+AGG + tig0023402:27852-27871 None:intergenic 50.0%
GGGGGTCTTGCTAATATCTG+TGG + tig0023402:27866-27885 None:intergenic 50.0%
AGCAAGACCCCCATAGATCA+TGG - tig0023402:27874-27893 Msa1408620:intron 50.0%
ATGAGGTTTCACCTGTGGCA+TGG + tig0023402:27906-27925 None:intergenic 50.0%
!! TTCAGGGTTCAGGTTGGCTT+AGG - tig0023402:27967-27986 Msa1408620:intron 50.0%
AGCAATAGCCACCACCAGAA+TGG - tig0023402:28097-28116 Msa1408620:intron 50.0%
TGGTCTAACCATTCTGGTGG+TGG + tig0023402:28108-28127 None:intergenic 50.0%
! GTTTCAACAACGGCGGCTTT+TGG + tig0023402:28128-28147 None:intergenic 50.0%
GACGACAATGTCACCGACAA+TGG + tig0023402:28219-28238 None:intergenic 50.0%
TCCCAAAAACCGGTCACTAG+AGG - tig0023402:28237-28256 Msa1408620:intron 50.0%
!! GTCCTCTAGTGACCGGTTTT+TGG + tig0023402:28242-28261 None:intergenic 50.0%
! TTCAAGTTATGGGACCCTGG+TGG - tig0023402:28330-28349 Msa1408620:intron 50.0%
GGATAACACAACTGTCCACC+AGG + tig0023402:28348-28367 None:intergenic 50.0%
TCACCTTGTCCTCAAGGTGA+AGG + tig0023402:28369-28388 None:intergenic 50.0%
!! TAGAAGGGGGGGAGTATTGT+TGG - tig0023402:28394-28413 Msa1408620:intron 50.0%
!! GGGGGAGTATTGTTGGCAAT+AGG - tig0023402:28401-28420 Msa1408620:intron 50.0%
CCTCCAAGCATTCAAGAGCT+TGG + tig0023402:28638-28657 None:intergenic 50.0%
CCAAGCTCTTGAATGCTTGG+AGG - tig0023402:28635-28654 Msa1408620:intron 50.0%
ACTAAGTGGGGTCAGCTACA+TGG + tig0023402:29084-29103 None:intergenic 50.0%
ATGTAGCTGACCCCACTTAG+TGG - tig0023402:29083-29102 Msa1408620:intron 50.0%
TGTAGCTGACCCCACTTAGT+GGG - tig0023402:29084-29103 Msa1408620:intron 50.0%
TGACCCCACTTAGTGGGATA+AGG - tig0023402:29090-29109 Msa1408620:intron 50.0%
! CCAAGCCTTATCCCACTAAG+TGG + tig0023402:29098-29117 None:intergenic 50.0%
CCACTTAGTGGGATAAGGCT+TGG - tig0023402:29095-29114 Msa1408620:intron 50.0%
! TGCACTCGAGGAGGCATAAT+AGG + tig0023402:30337-30356 None:intergenic 50.0%
CTTCAGAGCCTCTTCAGATG+CGG + tig0023402:30420-30439 None:intergenic 50.0%
! CCACAAGACGGTATTTCTGC+AGG + tig0023402:30528-30547 None:intergenic 50.0%
CCTGCAGAAATACCGTCTTG+TGG - tig0023402:30525-30544 Msa1408620:intron 50.0%
AACGCCTGCTCCCTAAAACA+GGG + tig0023402:30679-30698 None:intergenic 50.0%
TAACGCCTGCTCCCTAAAAC+AGG + tig0023402:30680-30699 None:intergenic 50.0%
GGAACCAACGCCAGGGTTTA+GGG + tig0023402:24563-24582 None:intergenic 55.0%
! GGTTGAATAGGTTGGCTCCG+GGG - tig0023402:25398-25417 Msa1408620:intron 55.0%
! ACCGAAGTGGCTGCCTTTTG+TGG - tig0023402:25806-25825 Msa1408620:intron 55.0%
! GTGGCTGCCTTTTGTGGTTG+GGG - tig0023402:25812-25831 Msa1408620:intron 55.0%
GCAGGAGCTAGTGCTGCATT+TGG - tig0023402:26058-26077 Msa1408620:intron 55.0%
GGAGCTAGTGCTGCATTTGG+AGG - tig0023402:26061-26080 Msa1408620:intron 55.0%
TGGTGGCAACCTTTACACGG+CGG - tig0023402:26302-26321 Msa1408620:intron 55.0%
! TGTGGAAGGTATGGTGGTCG+TGG - tig0023402:26352-26371 Msa1408620:intron 55.0%
AAGAGGCTACCCGGTTCACA+AGG - tig0023402:27305-27324 Msa1408620:intron 55.0%
AGAGGCTACCCGGTTCACAA+GGG - tig0023402:27306-27325 Msa1408620:intron 55.0%
ACGTAACGTGTGCGATGGAG+AGG - tig0023402:27344-27363 Msa1408620:intron 55.0%
CGTAACGTGTGCGATGGAGA+GGG - tig0023402:27345-27364 Msa1408620:intron 55.0%
CATGGACAAAGCCATGCCAC+AGG - tig0023402:27892-27911 Msa1408620:intron 55.0%
! CTAGTGGGCCGCCATTTATG+TGG + tig0023402:28020-28039 None:intergenic 55.0%
TCCAGGGGTTTCAACAACGG+CGG + tig0023402:28135-28154 None:intergenic 55.0%
TGTGTGAGAGCCGATGTCCA+GGG + tig0023402:28151-28170 None:intergenic 55.0%
GCTGTCAGTCCTCTAGTGAC+CGG + tig0023402:28249-28268 None:intergenic 55.0%
CCTCTTCAGATGCGGTGGAT+TGG + tig0023402:30412-30431 None:intergenic 55.0%
CCAATCCACCGCATCTGAAG+AGG - tig0023402:30409-30428 Msa1408620:intron 55.0%
! CCAACGCCAGGGTTTAGGGT+TGG + tig0023402:24559-24578 None:intergenic 60.0%
CCAACCCTAAACCCTGGCGT+TGG - tig0023402:24556-24575 Msa1408620:three_prime_UTR 60.0%
CGGAACCAACGCCAGGGTTT+AGG + tig0023402:24564-24583 None:intergenic 60.0%
AACGAGCGGAACCAACGCCA+GGG + tig0023402:24570-24589 None:intergenic 60.0%
GAGACAACGAGGGCAACGAG+CGG + tig0023402:24584-24603 None:intergenic 60.0%
! GAATAGGTTGGCTCCGGGGT+TGG - tig0023402:25402-25421 Msa1408620:intron 60.0%
GCTACCCGGTTCACAAGGGT+AGG - tig0023402:27310-27329 Msa1408620:intron 60.0%
CTGTGGCCTACCTCTCAAGG+TGG + tig0023402:27849-27868 None:intergenic 60.0%
GTGTGAGAGCCGATGTCCAG+GGG + tig0023402:28150-28169 None:intergenic 60.0%
CTGTGTGAGAGCCGATGTCC+AGG + tig0023402:28152-28171 None:intergenic 60.0%
!! GGACATCGGCTCTCACACAG+TGG - tig0023402:28152-28171 Msa1408620:intron 60.0%
CAGAGCCTCTTCAGATGCGG+TGG + tig0023402:30417-30436 None:intergenic 60.0%
!!! GGTGCCCTGTTTTAGGGAGC+AGG - tig0023402:30672-30691 Msa1408620:intron 60.0%
CAACGAGCGGAACCAACGCC+AGG + tig0023402:24571-24590 None:intergenic 65.0%
! TAGGTTGGCTCCGGGGTTGG+TGG - tig0023402:25405-25424 Msa1408620:intron 65.0%
GCCGCCGTTGTTGAAACCCC+TGG - tig0023402:28131-28150 Msa1408620:intron 65.0%
GGTCGGCAGCCGCCGTGTAA+AGG + tig0023402:26314-26333 None:intergenic 70.0%
CGGCGGCTGCCGACCTACTA+TGG - tig0023402:26319-26338 Msa1408620:intron 70.0%
Chromosome Type Strat End Strand Name
tig0023402 gene 24499 30734 24499 ID=Msa1408620;Name=Msa1408620
tig0023402 mRNA 24499 30734 24499 ID=Msa1408620-mRNA-1;Parent=Msa1408620;Name=Msa1408620-mRNA-1;_AED=0.17;_eAED=0.19;_QI=0|0.75|0.8|1|0.5|0.6|5|297|104
tig0023402 exon 24499 24938 24499 ID=Msa1408620-mRNA-1:exon:25659;Parent=Msa1408620-mRNA-1
tig0023402 exon 29151 29196 29151 ID=Msa1408620-mRNA-1:exon:25658;Parent=Msa1408620-mRNA-1
tig0023402 exon 29400 29458 29400 ID=Msa1408620-mRNA-1:exon:25657;Parent=Msa1408620-mRNA-1
tig0023402 exon 29774 29825 29774 ID=Msa1408620-mRNA-1:exon:25656;Parent=Msa1408620-mRNA-1
tig0023402 exon 30720 30734 30720 ID=Msa1408620-mRNA-1:exon:25655;Parent=Msa1408620-mRNA-1
tig0023402 CDS 30720 30734 30720 ID=Msa1408620-mRNA-1:cds;Parent=Msa1408620-mRNA-1
tig0023402 CDS 29774 29825 29774 ID=Msa1408620-mRNA-1:cds;Parent=Msa1408620-mRNA-1
tig0023402 CDS 29400 29458 29400 ID=Msa1408620-mRNA-1:cds;Parent=Msa1408620-mRNA-1
tig0023402 CDS 29151 29196 29151 ID=Msa1408620-mRNA-1:cds;Parent=Msa1408620-mRNA-1
tig0023402 CDS 24796 24938 24796 ID=Msa1408620-mRNA-1:cds;Parent=Msa1408620-mRNA-1
tig0023402 three_prime_UTR 24499 24795 24499 ID=Msa1408620-mRNA-1:three_prime_utr;Parent=Msa1408620-mRNA-1
Gene Sequence

>Msa1408620

ATGGGAACAAGAGAGGTTGGCTCCGGGGTTGGTGGAATGCTTAGTGCAGTTCATGGTTTGAATAATGGGTTACCATATCTTCAAAATCGTCTGAAAGGACCGAAGTGGCTGCCTTTTGTGGTTGGGATCCCTCCATTGTTGATATTTGCAGGAGCTAGTGCTGCATTTGGAGGTTATGTACTTCCAAAGTTCGCTCAACTCACAGTAACATCCTATTATGCCTCCTCGAGTGCATCACATTATGGAATCTCTCTTCTCACCCGGCATATTGAAGAGAACTACAAATCCAATCCACCGCATCTGAAGAGGCTCTGA

Protein sequence

>Msa1408620

MGTREVGSGVGGMLSAVHGLNNGLPYLQNRLKGPKWLPFVVGIPPLLIFAGASAAFGGYVLPKFAQLTVTSYYASSSASHYGISLLTRHIEENYKSNPPHLKRL*