Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0524220 | XP_003603927.1 | 81.619 | 457 | 63 | 8 | 1 | 456 | 1 | 437 | 0.0 | 681 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0524220 | G7J729 | 81.619 | 457 | 63 | 8 | 1 | 456 | 1 | 437 | 0.0 | 681 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0524220 | TF | MYB-related |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017510 | Msa0524220 | 0.822267 | 2.595253e-53 | -8.615850e-47 |
| Msa0028640 | Msa0524220 | 0.815198 | 1.045317e-51 | -8.615850e-47 |
| Msa0101810 | Msa0524220 | -0.811981 | 5.332633e-51 | -8.615850e-47 |
| Msa0157290 | Msa0524220 | 0.822070 | 2.883211e-53 | -8.615850e-47 |
| Msa0165220 | Msa0524220 | 0.801092 | 1.059624e-48 | -8.615850e-47 |
| Msa0419820 | Msa0524220 | 0.804055 | 2.595538e-49 | -8.615850e-47 |
| Msa0524220 | Msa0880140 | 0.818338 | 2.065579e-52 | -8.615850e-47 |
| Msa0524220 | Msa0993600 | 0.800491 | 1.405747e-48 | -8.615850e-47 |
| Msa0524220 | Msa1222970 | 0.801020 | 1.096657e-48 | -8.615850e-47 |
| Msa0524220 | Msa1264020 | 0.805485 | 1.304884e-49 | -8.615850e-47 |
| Msa0524220 | Msa1367080 | 0.808532 | 2.957799e-50 | -8.615850e-47 |
| Msa0524220 | Msa1367420 | 0.880913 | 3.708755e-70 | -8.615850e-47 |
| Msa0524220 | Msa1416150 | 0.802997 | 4.301825e-49 | -8.615850e-47 |
| Msa0524220 | Msa1417640 | 0.820455 | 6.796271e-53 | -8.615850e-47 |
| Msa0524220 | Msa1461300 | 0.806704 | 7.230101e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0524220 | MtrunA17_Chr3g0144601 | 81.619 | 457 | 63 | 8 | 1 | 456 | 1 | 437 | 0.0 | 681 |
| Msa0524220 | MtrunA17_Chr3g0145531 | 81.619 | 457 | 63 | 8 | 1 | 456 | 1 | 437 | 0.0 | 673 |
| Msa0524220 | MtrunA17_Chr3g0082361 | 79.032 | 124 | 21 | 2 | 194 | 317 | 56 | 174 | 7.24e-59 | 191 |
| Msa0524220 | MtrunA17_Chr3g0107471 | 32.443 | 262 | 120 | 5 | 220 | 452 | 387 | 620 | 2.02e-30 | 124 |
| Msa0524220 | MtrunA17_Chr3g0107471 | 34.135 | 208 | 108 | 9 | 6 | 209 | 8 | 190 | 1.59e-17 | 85.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0524220 | AT5G58340.2 | 25.984 | 381 | 247 | 13 | 89 | 450 | 81 | 445 | 3.13e-14 | 75.1 |
| Msa0524220 | AT5G58340.1 | 25.984 | 381 | 247 | 13 | 89 | 450 | 81 | 445 | 3.13e-14 | 75.1 |
| Msa0524220 | AT1G15720.1 | 28.455 | 369 | 194 | 16 | 89 | 450 | 81 | 386 | 1.59e-12 | 69.3 |
Find 127 sgRNAs with CRISPR-Local
Find 226 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTCATCATTGTTAACATTT+AGG | 0.186976 | 3_4:-77728672 | None:intergenic |
| AAAGAAATAACCAACCATTA+TGG | 0.218651 | 3_4:-77727900 | None:intergenic |
| CTGCTTGGAGGTAGTGTTTA+GGG | 0.228026 | 3_4:-77727618 | None:intergenic |
| CTCTTGAATGGCTTTCCTTC+TGG | 0.254243 | 3_4:-77727785 | None:intergenic |
| TCCAAGCAGTTGACAGAATA+TGG | 0.254939 | 3_4:+77727632 | Msa0524220:CDS |
| TAAGTGAATCCCCGTTCTTT+TGG | 0.273307 | 3_4:-77728486 | None:intergenic |
| TAACTCCAAAATTGAGATTC+TGG | 0.273343 | 3_4:+77727695 | Msa0524220:CDS |
| GTCTGGCATACAAATAGAAT+TGG | 0.288931 | 3_4:-77728554 | None:intergenic |
| TGAGTACGAGCAGAACTATT+TGG | 0.294065 | 3_4:-77728754 | None:intergenic |
| AAAGACAATGGAAGGCTTAA+AGG | 0.299896 | 3_4:+77728376 | Msa0524220:CDS |
| GCATCGCTAATAGGAGGATT+AGG | 0.304698 | 3_4:-77727514 | None:intergenic |
| AAGAGAAAGGAATTTGAAAA+TGG | 0.305804 | 3_4:+77727243 | Msa0524220:exon |
| ACTGCTTGGAGGTAGTGTTT+AGG | 0.310482 | 3_4:-77727619 | None:intergenic |
| TATAGAGAGTGAGCATATTA+AGG | 0.313329 | 3_4:+77727315 | Msa0524220:CDS |
| CCTTTAAAACAAAAGTTACT+TGG | 0.313965 | 3_4:-77730170 | None:intergenic |
| TGATTGTGAAGTAAAATTCT+AGG | 0.316653 | 3_4:-77730100 | None:intergenic |
| TCAGAATTGGAGAAGGAAAC+TGG | 0.354877 | 3_4:+77729750 | Msa0524220:intron |
| CTCTTCTCTTCTAACGCTGC+TGG | 0.355705 | 3_4:-77727220 | None:intergenic |
| AAGAAATAACCAACCATTAT+GGG | 0.366017 | 3_4:-77727899 | None:intergenic |
| CATCTTCCGATTATCGATTT+CGG | 0.378562 | 3_4:-77727365 | None:intergenic |
| GATGATGAACATCACTTTGA+TGG | 0.379549 | 3_4:-77728717 | None:intergenic |
| GATTTCATGGCATCGCTAAT+AGG | 0.386966 | 3_4:-77727523 | None:intergenic |
| CCATTCATCGATAGATGCTT+TGG | 0.387362 | 3_4:-77727428 | None:intergenic |
| GGAGGATTAGGGTTTGAAGA+AGG | 0.390213 | 3_4:-77727502 | None:intergenic |
| GTAGACATAAGCAGATTTCA+TGG | 0.396640 | 3_4:-77727536 | None:intergenic |
| GGAAAGGTTAGGGTGGTGTT+TGG | 0.397081 | 3_4:+77727264 | Msa0524220:CDS |
| CATCGCTAATAGGAGGATTA+GGG | 0.397652 | 3_4:-77727513 | None:intergenic |
| TGTTGTTGTTGTTGAGGTAA+TGG | 0.400125 | 3_4:+77728414 | Msa0524220:CDS |
| TTTGTATGCCAGACATTGTA+AGG | 0.401380 | 3_4:+77728563 | Msa0524220:CDS |
| GAAGAAGCTTTCTCCGTTGA+AGG | 0.405658 | 3_4:+77729295 | Msa0524220:CDS |
| CACCTGCACCTGCTGCTTCA+AGG | 0.406135 | 3_4:-77727585 | None:intergenic |
| ATATATACAGCCCTTCTGTT+TGG | 0.407004 | 3_4:-77729991 | None:intergenic |
| GGAAGTTGCCTTCGTAAGAT+TGG | 0.411891 | 3_4:-77728695 | None:intergenic |
| TGGTGTTTGGAATTCGTTCT+TGG | 0.411975 | 3_4:+77727277 | Msa0524220:CDS |
| GCTCAAAATCAATCCCATAA+TGG | 0.413594 | 3_4:+77727886 | Msa0524220:CDS |
| TTAACGAGGCCCAAAAGAAC+GGG | 0.420375 | 3_4:+77728476 | Msa0524220:CDS |
| TCCATATTCTGTCAACTGCT+TGG | 0.421745 | 3_4:-77727633 | None:intergenic |
| TTTAGGCAAGCATGTGGGTT+GGG | 0.424815 | 3_4:-77728655 | None:intergenic |
| AAAACTACTTCTAATTGATT+GGG | 0.433610 | 3_4:+77727477 | Msa0524220:CDS |
| GCATGTATCGTGAGTTGAAA+AGG | 0.433870 | 3_4:-77727738 | None:intergenic |
| GTGTCTGATATTGCGTTAGC+AGG | 0.434957 | 3_4:+77730140 | Msa0524220:three_prime_UTR |
| TGAATTTGGAAGGTATGTTC+AGG | 0.437724 | 3_4:+77730060 | Msa0524220:three_prime_UTR |
| GCAAATAACTTCTTCCCTCC+AGG | 0.443932 | 3_4:-77727672 | None:intergenic |
| TGGACAACAACTCATCTTCA+AGG | 0.456297 | 3_4:-77727408 | None:intergenic |
| AATGGGAAGAGGATAATCTA+AGG | 0.459156 | 3_4:+77729369 | Msa0524220:CDS |
| GGAGAAAGCTTCTTCCTCTC+TGG | 0.461592 | 3_4:-77729287 | None:intergenic |
| CACAAATCAGGAGCCACAAA+TGG | 0.462731 | 3_4:+77728606 | Msa0524220:CDS |
| TACTACTGTTGTTGTTGTTG+AGG | 0.467147 | 3_4:+77728408 | Msa0524220:CDS |
| TGGAGAAATTTGAAGCGGTC+TGG | 0.467731 | 3_4:+77729908 | Msa0524220:CDS |
| ATTTGAAAATGGAAAGGTTA+GGG | 0.470688 | 3_4:+77727254 | Msa0524220:exon |
| TCTAACGCTGCTGGATCGAT+TGG | 0.470932 | 3_4:-77727211 | None:intergenic |
| ACATCAGACCTTACAATGTC+TGG | 0.471043 | 3_4:-77728571 | None:intergenic |
| GTACATTTGCATCTTTACTC+TGG | 0.471288 | 3_4:-77728633 | None:intergenic |
| TGATTCGATCGATGGATTGC+AGG | 0.471350 | 3_4:+77729223 | Msa0524220:CDS |
| AATTTGAAAATGGAAAGGTT+AGG | 0.473595 | 3_4:+77727253 | Msa0524220:exon |
| GAAGATGAAAATGCTTCTGT+TGG | 0.479184 | 3_4:+77727381 | Msa0524220:CDS |
| TACCTTGAAGCAGCAGGTGC+AGG | 0.480680 | 3_4:+77727583 | Msa0524220:CDS |
| GCAACAGAGTGAAGAAAGGA+AGG | 0.481758 | 3_4:-77727850 | None:intergenic |
| GGCAATTGAAGACACAAATC+AGG | 0.483604 | 3_4:+77728594 | Msa0524220:CDS |
| CAGTCACCGAAATCGATAAT+CGG | 0.485524 | 3_4:+77727359 | Msa0524220:CDS |
| GATGCTCGGAATAACCTTGT+AGG | 0.496320 | 3_4:+77727826 | Msa0524220:CDS |
| TCTGGCATACAAATAGAATT+GGG | 0.497185 | 3_4:-77728553 | None:intergenic |
| ATATTCTGTCAACTGCTTGG+AGG | 0.502799 | 3_4:-77727630 | None:intergenic |
| ATAAGTTAGATACATCTTGA+GGG | 0.506213 | 3_4:-77730211 | None:intergenic |
| CTATTTGGTTTCATCAAGCT+AGG | 0.506498 | 3_4:-77728739 | None:intergenic |
| AAGTACATACAGTTTAATTC+CGG | 0.506549 | 3_4:-77729393 | None:intergenic |
| ATGAAAATGCTTCTGTTGGA+AGG | 0.511456 | 3_4:+77727385 | Msa0524220:CDS |
| TAGAAGAGAAGAGAAGAGAA+AGG | 0.511915 | 3_4:+77727230 | Msa0524220:five_prime_UTR |
| CCAAAGCATCTATCGATGAA+TGG | 0.516478 | 3_4:+77727428 | Msa0524220:CDS |
| TGAAAAGGGAAGCATCGATT+CGG | 0.518415 | 3_4:-77727723 | None:intergenic |
| TTGTCTTTGTCGAGTTCCAT+CGG | 0.525502 | 3_4:-77728361 | None:intergenic |
| GAGGATTAGGGTTTGAAGAA+GGG | 0.529616 | 3_4:-77727501 | None:intergenic |
| AGCAGCAACAGAGTGAAGAA+AGG | 0.532298 | 3_4:-77727854 | None:intergenic |
| AACGCAATATCAGACACTAC+TGG | 0.532623 | 3_4:-77730134 | None:intergenic |
| ATCAGTTCATGCCAAACAGA+AGG | 0.535655 | 3_4:+77729980 | Msa0524220:three_prime_UTR |
| CATGTATCGTGAGTTGAAAA+GGG | 0.536326 | 3_4:-77727737 | None:intergenic |
| TAGTGGGATGATTCGATCGA+TGG | 0.537188 | 3_4:+77729215 | Msa0524220:intron |
| GATTGCAGGCAGGAACATCA+AGG | 0.543132 | 3_4:+77729237 | Msa0524220:CDS |
| AATGGCTCGCTGCTTTATCA+AGG | 0.544070 | 3_4:-77730257 | None:intergenic |
| GATTGTGAAGTAAAATTCTA+GGG | 0.544638 | 3_4:-77730099 | None:intergenic |
| TTCACTTAAATGCAATTCTG+TGG | 0.545122 | 3_4:+77728501 | Msa0524220:CDS |
| TCGATCGATGGATTGCAGGC+AGG | 0.547141 | 3_4:+77729227 | Msa0524220:CDS |
| TTTGGTTCATACTCCTTCAA+CGG | 0.551515 | 3_4:-77729308 | None:intergenic |
| AATAAGTTAGATACATCTTG+AGG | 0.553492 | 3_4:-77730212 | None:intergenic |
| AAAATGGAGTCAATGGGAAG+AGG | 0.556320 | 3_4:+77729358 | Msa0524220:CDS |
| ATTTAGGCAAGCATGTGGGT+TGG | 0.556821 | 3_4:-77728656 | None:intergenic |
| AAAGGAATTTGAAAATGGAA+AGG | 0.559315 | 3_4:+77727248 | Msa0524220:exon |
| GAACCGTAGGTTTCAAAACC+TGG | 0.560313 | 3_4:+77727654 | Msa0524220:CDS |
| ATGATGAACATCACTTTGAT+GGG | 0.562151 | 3_4:-77728716 | None:intergenic |
| GAAGAGGATAATCTAAGGAC+CGG | 0.564580 | 3_4:+77729374 | Msa0524220:CDS |
| GTTAACGAGGCCCAAAAGAA+CGG | 0.567267 | 3_4:+77728475 | Msa0524220:CDS |
| GAAGAAAGGAAGGGCCTACA+AGG | 0.570430 | 3_4:-77727840 | None:intergenic |
| CTTCATTGTCTGATACCAGA+AGG | 0.585689 | 3_4:+77727770 | Msa0524220:CDS |
| AACTCGACAAAGACAATGGA+AGG | 0.587275 | 3_4:+77728368 | Msa0524220:CDS |
| CAATGGAAGGCTTAAAGGCA+AGG | 0.588132 | 3_4:+77728381 | Msa0524220:CDS |
| TTGCTGTGGAATGTACCGTT+AGG | 0.589094 | 3_4:+77727560 | Msa0524220:CDS |
| TTCATGGCATCGCTAATAGG+AGG | 0.591616 | 3_4:-77727520 | None:intergenic |
| AGGTTGATTTGAAAGACAAG+TGG | 0.593616 | 3_4:+77729888 | Msa0524220:intron |
| TTGACAGAATATGGAACCGT+AGG | 0.599653 | 3_4:+77727641 | Msa0524220:CDS |
| TGACTCTTTGCCAGTTAACG+AGG | 0.601690 | 3_4:+77728462 | Msa0524220:CDS |
| TGCTTATGTCTACATTGCTG+TGG | 0.602167 | 3_4:+77727546 | Msa0524220:CDS |
| TTAACATTTAGGCAAGCATG+TGG | 0.604145 | 3_4:-77728661 | None:intergenic |
| CTTGAAGCAGCAGGTGCAGG+TGG | 0.604795 | 3_4:+77727586 | Msa0524220:CDS |
| TCTCATATTAGAGTCTCCGA+TGG | 0.606409 | 3_4:+77728345 | Msa0524220:intron |
| ATTGCAGGCAGGAACATCAA+GGG | 0.616311 | 3_4:+77729238 | Msa0524220:CDS |
| GTTAGGTACCTTGAAGCAGC+AGG | 0.617125 | 3_4:+77727577 | Msa0524220:CDS |
| ATTATCGATTTCGGTGACTG+AGG | 0.617150 | 3_4:-77727356 | None:intergenic |
| ATGGAACTCGACAAAGACAA+TGG | 0.617169 | 3_4:+77728364 | Msa0524220:CDS |
| TCAGTTCATGCCAAACAGAA+GGG | 0.621916 | 3_4:+77729981 | Msa0524220:three_prime_UTR |
| TGTCTGATATTGCGTTAGCA+GGG | 0.622995 | 3_4:+77730141 | Msa0524220:three_prime_UTR |
| TGAAAATGGAAAGGTTAGGG+TGG | 0.628807 | 3_4:+77727257 | Msa0524220:exon |
| CCTAAATGTTAACAATGATG+AGG | 0.630277 | 3_4:+77728672 | Msa0524220:CDS |
| TGCTGCTTCAAGGTACCTAA+CGG | 0.634086 | 3_4:-77727575 | None:intergenic |
| ATACAAATAGAATTGGGCAC+AGG | 0.635848 | 3_4:-77728547 | None:intergenic |
| ATGGATGCTTGAACTTCTCG+AGG | 0.640307 | 3_4:+77727447 | Msa0524220:CDS |
| TTGCAGGCAGGAACATCAAG+GGG | 0.642905 | 3_4:+77729239 | Msa0524220:CDS |
| TTCGTTTGCGTAGTCCAGAG+AGG | 0.651598 | 3_4:+77729273 | Msa0524220:CDS |
| CAACAGAGTGAAGAAAGGAA+GGG | 0.656227 | 3_4:-77727849 | None:intergenic |
| CGTAGGTTTCAAAACCTGGA+GGG | 0.661614 | 3_4:+77727658 | Msa0524220:CDS |
| CAGAAGGAAAGCCATTCAAG+AGG | 0.668057 | 3_4:+77727786 | Msa0524220:CDS |
| TAACATTTAGGCAAGCATGT+GGG | 0.675244 | 3_4:-77728660 | None:intergenic |
| ACAAGTGGAGAAATTTGAAG+CGG | 0.678726 | 3_4:+77729903 | Msa0524220:CDS |
| AGACATTGTAAGGTCTGATG+TGG | 0.687030 | 3_4:+77728573 | Msa0524220:CDS |
| CCGTAGGTTTCAAAACCTGG+AGG | 0.690526 | 3_4:+77727657 | Msa0524220:CDS |
| TAGTTCTGCTCGTACTCACG+AGG | 0.692042 | 3_4:+77728759 | Msa0524220:CDS |
| TGATGAGGCCAATCTTACGA+AGG | 0.699645 | 3_4:+77728687 | Msa0524220:CDS |
| TAACGAGGCCCAAAAGAACG+GGG | 0.712659 | 3_4:+77728477 | Msa0524220:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAATTTGAATAGTAAAA+TGG | - | chr3_4:77729627-77729646 | None:intergenic | 10.0% |
| !!! | TTTGTAATTTTTTGTATTTC+TGG | + | chr3_4:77728791-77728810 | Msa0524220:intron | 15.0% |
| !! | TAAAATAAGCAATAAAATCA+AGG | - | chr3_4:77729193-77729212 | None:intergenic | 15.0% |
| !! | AAATATTATAGTAACTTGAT+TGG | - | chr3_4:77729426-77729445 | None:intergenic | 15.0% |
| !! | ATCAGTAAAAAAAAAAAAGA+AGG | - | chr3_4:77729962-77729981 | None:intergenic | 15.0% |
| !!! | ATAGTATTACTTTTTGAATT+TGG | + | chr3_4:77730046-77730065 | Msa0524220:three_prime_UTR | 15.0% |
| !! | AAAAACTACTTCTAATTGAT+TGG | + | chr3_4:77727476-77727495 | Msa0524220:CDS | 20.0% |
| !! | AAAACTACTTCTAATTGATT+GGG | + | chr3_4:77727477-77727496 | Msa0524220:CDS | 20.0% |
| !!! | TTTTTAGAGTAAAAAGGAAT+GGG | - | chr3_4:77729105-77729124 | None:intergenic | 20.0% |
| !!! | TTATTGCTTATTTTATGTAG+TGG | + | chr3_4:77729198-77729217 | Msa0524220:intron | 20.0% |
| !!! | TATTGCTTATTTTATGTAGT+GGG | + | chr3_4:77729199-77729218 | Msa0524220:intron | 20.0% |
| !! | AACCAAAAAATATTACGAAA+AGG | + | chr3_4:77729324-77729343 | Msa0524220:CDS | 20.0% |
| !! | AAAGGAGAAAGAAAAAAAAA+TGG | + | chr3_4:77729342-77729361 | Msa0524220:CDS | 20.0% |
| !!! | ATACAATGTTTTTTCGTTTT+TGG | + | chr3_4:77729463-77729482 | Msa0524220:intron | 20.0% |
| !! | AAAAATGTATGACAAAGTAA+AGG | - | chr3_4:77729516-77729535 | None:intergenic | 20.0% |
| !! | AATTGAAGCATAAATAGTTA+GGG | - | chr3_4:77729652-77729671 | None:intergenic | 20.0% |
| !!! | CTTTTTTCTTTTTTCAGAAT+TGG | + | chr3_4:77729737-77729756 | Msa0524220:intron | 20.0% |
| !!! | TGAATCAAATTTTGTTTATC+AGG | + | chr3_4:77729868-77729887 | Msa0524220:intron | 20.0% |
| !!! | TACATGCATAAATTTTTCAT+TGG | - | chr3_4:77729937-77729956 | None:intergenic | 20.0% |
| !!! | TATTACTTTTTGAATTTGGA+AGG | + | chr3_4:77730050-77730069 | Msa0524220:three_prime_UTR | 20.0% |
| !!! | AGATGTATCTAACTTATTTT+AGG | + | chr3_4:77730217-77730236 | Msa0524220:three_prime_UTR | 20.0% |
| ! | AAGAGAAAGGAATTTGAAAA+TGG | + | chr3_4:77727243-77727262 | Msa0524220:exon | 25.0% |
| ! | AAAGGAATTTGAAAATGGAA+AGG | + | chr3_4:77727248-77727267 | Msa0524220:exon | 25.0% |
| ! | AATTTGAAAATGGAAAGGTT+AGG | + | chr3_4:77727253-77727272 | Msa0524220:exon | 25.0% |
| ! | ATTTGAAAATGGAAAGGTTA+GGG | + | chr3_4:77727254-77727273 | Msa0524220:exon | 25.0% |
| ! | AAGAAATAACCAACCATTAT+GGG | - | chr3_4:77727902-77727921 | None:intergenic | 25.0% |
| ! | AAAGAAATAACCAACCATTA+TGG | - | chr3_4:77727903-77727922 | None:intergenic | 25.0% |
| ! | AACAACAACAACAGAAAAAA+GGG | - | chr3_4:77727928-77727947 | None:intergenic | 25.0% |
| ! | AAACAACAACAACAGAAAAA+AGG | - | chr3_4:77727929-77727948 | None:intergenic | 25.0% |
| !!! | TCTGTTGTTGTTGTTTATTA+CGG | + | chr3_4:77727933-77727952 | Msa0524220:intron | 25.0% |
| ! | AATTTCATTGCAAAATGCAT+AGG | + | chr3_4:77728177-77728196 | Msa0524220:intron | 25.0% |
| ! | ATTTCATTGCAAAATGCATA+GGG | + | chr3_4:77728178-77728197 | Msa0524220:intron | 25.0% |
| !! | AACAGGTATTTTTCATAACT+CGG | - | chr3_4:77728286-77728305 | None:intergenic | 25.0% |
| !!! | AAAAGTTCTAAAAAGCAAAC+AGG | - | chr3_4:77728303-77728322 | None:intergenic | 25.0% |
| ! | TTGCAATTTATCTGCATTTA+GGG | - | chr3_4:77728881-77728900 | None:intergenic | 25.0% |
| ! | TTTGCAATTTATCTGCATTT+AGG | - | chr3_4:77728882-77728901 | None:intergenic | 25.0% |
| !!! | GTTTTTAGAGTAAAAAGGAA+TGG | - | chr3_4:77729106-77729125 | None:intergenic | 25.0% |
| !!! | CTAGTGTTTTTAGAGTAAAA+AGG | - | chr3_4:77729111-77729130 | None:intergenic | 25.0% |
| ! | AGAACAAAAAATTACAAGCA+TGG | - | chr3_4:77729163-77729182 | None:intergenic | 25.0% |
| !! | CTCCTTTTCGTAATATTTTT+TGG | - | chr3_4:77729329-77729348 | None:intergenic | 25.0% |
| ! | AGAAAAAAAAATGGAGTCAA+TGG | + | chr3_4:77729351-77729370 | Msa0524220:CDS | 25.0% |
| ! | GAAAAAAAAATGGAGTCAAT+GGG | + | chr3_4:77729352-77729371 | Msa0524220:CDS | 25.0% |
| ! | AAGTACATACAGTTTAATTC+CGG | - | chr3_4:77729396-77729415 | None:intergenic | 25.0% |
| ! | AAAGTAAAGGTAAAAGCAAA+AGG | - | chr3_4:77729503-77729522 | None:intergenic | 25.0% |
| ! | CAATTGAAGCATAAATAGTT+AGG | - | chr3_4:77729653-77729672 | None:intergenic | 25.0% |
| ! | GATTGTGAAGTAAAATTCTA+GGG | - | chr3_4:77730102-77730121 | None:intergenic | 25.0% |
| ! | TGATTGTGAAGTAAAATTCT+AGG | - | chr3_4:77730103-77730122 | None:intergenic | 25.0% |
| !! | TTTTACTTCACAATCATGAA+AGG | + | chr3_4:77730107-77730126 | Msa0524220:three_prime_UTR | 25.0% |
| !!! | CCTTTAAAACAAAAGTTACT+TGG | - | chr3_4:77730173-77730192 | None:intergenic | 25.0% |
| !!! | CCAAGTAACTTTTGTTTTAA+AGG | + | chr3_4:77730170-77730189 | Msa0524220:three_prime_UTR | 25.0% |
| ! | ATAAGTTAGATACATCTTGA+GGG | - | chr3_4:77730214-77730233 | None:intergenic | 25.0% |
| ! | AATAAGTTAGATACATCTTG+AGG | - | chr3_4:77730215-77730234 | None:intergenic | 25.0% |
| TATAGAGAGTGAGCATATTA+AGG | + | chr3_4:77727315-77727334 | Msa0524220:CDS | 30.0% | |
| TAACTCCAAAATTGAGATTC+TGG | + | chr3_4:77727695-77727714 | Msa0524220:CDS | 30.0% | |
| ! | CTTTTCCAGAATCTCAATTT+TGG | - | chr3_4:77727703-77727722 | None:intergenic | 30.0% |
| AAAAAGTTGAACCTCTTGAA+TGG | - | chr3_4:77727800-77727819 | None:intergenic | 30.0% | |
| !!! | TCAAGAGGTTCAACTTTTTT+TGG | + | chr3_4:77727801-77727820 | Msa0524220:CDS | 30.0% |
| AAAATCAATCCCATAATGGT+TGG | + | chr3_4:77727890-77727909 | Msa0524220:intron | 30.0% | |
| ACAACAACAACAGAAAAAAG+GGG | - | chr3_4:77727927-77727946 | None:intergenic | 30.0% | |
| TTCACTTAAATGCAATTCTG+TGG | + | chr3_4:77728501-77728520 | Msa0524220:CDS | 30.0% | |
| TCTGGCATACAAATAGAATT+GGG | - | chr3_4:77728556-77728575 | None:intergenic | 30.0% | |
| CCTCATCATTGTTAACATTT+AGG | - | chr3_4:77728675-77728694 | None:intergenic | 30.0% | |
| CCTAAATGTTAACAATGATG+AGG | + | chr3_4:77728672-77728691 | Msa0524220:CDS | 30.0% | |
| ATGATGAACATCACTTTGAT+GGG | - | chr3_4:77728719-77728738 | None:intergenic | 30.0% | |
| !!! | ATTTCTGGTTGATTCCTTTT+TGG | + | chr3_4:77728806-77728825 | Msa0524220:intron | 30.0% |
| !!! | TTTCTGGTTGATTCCTTTTT+GGG | + | chr3_4:77728807-77728826 | Msa0524220:intron | 30.0% |
| ACTAACAAAGTCTACATTCA+GGG | - | chr3_4:77728910-77728929 | None:intergenic | 30.0% | |
| TCAGGGACTAAATTAACTAA+CGG | - | chr3_4:77728957-77728976 | None:intergenic | 30.0% | |
| TTTGCATATTATCTGCATTC+AGG | + | chr3_4:77729030-77729049 | Msa0524220:intron | 30.0% | |
| TTGCATATTATCTGCATTCA+GGG | + | chr3_4:77729031-77729050 | Msa0524220:intron | 30.0% | |
| AAGCAATAAAATCAAGGCAT+CGG | - | chr3_4:77729187-77729206 | None:intergenic | 30.0% | |
| !!! | TCTTTTTTCAGAATTGGAGA+AGG | + | chr3_4:77729743-77729762 | Msa0524220:intron | 30.0% |
| AACTGAAGTAAGTCTAGTAA+AGG | + | chr3_4:77729808-77729827 | Msa0524220:intron | 30.0% | |
| ! | AGTAAGTCTAGTAAAGGTAT+TGG | + | chr3_4:77729814-77729833 | Msa0524220:intron | 30.0% |
| TAGAAGAGAAGAGAAGAGAA+AGG | + | chr3_4:77727230-77727249 | Msa0524220:five_prime_UTR | 35.0% | |
| !! | CATCTTCCGATTATCGATTT+CGG | - | chr3_4:77727368-77727387 | None:intergenic | 35.0% |
| GAAGATGAAAATGCTTCTGT+TGG | + | chr3_4:77727381-77727400 | Msa0524220:CDS | 35.0% | |
| ATGAAAATGCTTCTGTTGGA+AGG | + | chr3_4:77727385-77727404 | Msa0524220:CDS | 35.0% | |
| GTAGACATAAGCAGATTTCA+TGG | - | chr3_4:77727539-77727558 | None:intergenic | 35.0% | |
| ! | CATGTATCGTGAGTTGAAAA+GGG | - | chr3_4:77727740-77727759 | None:intergenic | 35.0% |
| !!! | AGAGGTTCAACTTTTTTTGG+AGG | + | chr3_4:77727804-77727823 | Msa0524220:CDS | 35.0% |
| !!! | AACTTTTTTTGGAGGATGCT+CGG | + | chr3_4:77727812-77727831 | Msa0524220:CDS | 35.0% |
| GCTCAAAATCAATCCCATAA+TGG | + | chr3_4:77727886-77727905 | Msa0524220:CDS | 35.0% | |
| ATGAAGCACAAGCACATATA+CGG | - | chr3_4:77728076-77728095 | None:intergenic | 35.0% | |
| TATATGTGCTTGTGCTTCAT+AGG | + | chr3_4:77728076-77728095 | Msa0524220:intron | 35.0% | |
| ! | AGTGAGAGCCTTATATACTT+TGG | + | chr3_4:77728147-77728166 | Msa0524220:intron | 35.0% |
| ! | GTGAGAGCCTTATATACTTT+GGG | + | chr3_4:77728148-77728167 | Msa0524220:intron | 35.0% |
| TCTCTCTCCCAAAGTATATA+AGG | - | chr3_4:77728158-77728177 | None:intergenic | 35.0% | |
| CCTAACCAATGAATGATTCA+TGG | - | chr3_4:77728207-77728226 | None:intergenic | 35.0% | |
| ! | CCATGAATCATTCATTGGTT+AGG | + | chr3_4:77728204-77728223 | Msa0524220:intron | 35.0% |
| AAAGACAATGGAAGGCTTAA+AGG | + | chr3_4:77728376-77728395 | Msa0524220:CDS | 35.0% | |
| ! | TACTACTGTTGTTGTTGTTG+AGG | + | chr3_4:77728408-77728427 | Msa0524220:CDS | 35.0% |
| ! | TGTTGTTGTTGTTGAGGTAA+TGG | + | chr3_4:77728414-77728433 | Msa0524220:CDS | 35.0% |
| ATACAAATAGAATTGGGCAC+AGG | - | chr3_4:77728550-77728569 | None:intergenic | 35.0% | |
| GTCTGGCATACAAATAGAAT+TGG | - | chr3_4:77728557-77728576 | None:intergenic | 35.0% | |
| TTTGTATGCCAGACATTGTA+AGG | + | chr3_4:77728563-77728582 | Msa0524220:CDS | 35.0% | |
| !!! | TTACTCTGGTTTTCCATTTG+TGG | - | chr3_4:77728622-77728641 | None:intergenic | 35.0% |
| GTACATTTGCATCTTTACTC+TGG | - | chr3_4:77728636-77728655 | None:intergenic | 35.0% | |
| TAACATTTAGGCAAGCATGT+GGG | - | chr3_4:77728663-77728682 | None:intergenic | 35.0% | |
| TTAACATTTAGGCAAGCATG+TGG | - | chr3_4:77728664-77728683 | None:intergenic | 35.0% | |
| GATGATGAACATCACTTTGA+TGG | - | chr3_4:77728720-77728739 | None:intergenic | 35.0% | |
| ! | CTATTTGGTTTCATCAAGCT+AGG | - | chr3_4:77728742-77728761 | None:intergenic | 35.0% |
| !! | TTCTGGTTGATTCCTTTTTG+GGG | + | chr3_4:77728808-77728827 | Msa0524220:intron | 35.0% |
| AAGTGACTAATTCCCCAAAA+AGG | - | chr3_4:77728823-77728842 | None:intergenic | 35.0% | |
| GACTAACAAAGTCTACATTC+AGG | - | chr3_4:77728911-77728930 | None:intergenic | 35.0% | |
| ACTAACGAAGTCTACATTCA+GGG | - | chr3_4:77728974-77728993 | None:intergenic | 35.0% | |
| ! | TTTGGTTCATACTCCTTCAA+CGG | - | chr3_4:77729311-77729330 | None:intergenic | 35.0% |
| AATGGGAAGAGGATAATCTA+AGG | + | chr3_4:77729369-77729388 | Msa0524220:CDS | 35.0% | |
| !! | AGGTTGATTTGAAAGACAAG+TGG | + | chr3_4:77729888-77729907 | Msa0524220:intron | 35.0% |
| ACAAGTGGAGAAATTTGAAG+CGG | + | chr3_4:77729903-77729922 | Msa0524220:CDS | 35.0% | |
| ATATATACAGCCCTTCTGTT+TGG | - | chr3_4:77729994-77730013 | None:intergenic | 35.0% | |
| ! | TGAATTTGGAAGGTATGTTC+AGG | + | chr3_4:77730060-77730079 | Msa0524220:three_prime_UTR | 35.0% |
| TGAAAATGGAAAGGTTAGGG+TGG | + | chr3_4:77727257-77727276 | Msa0524220:exon | 40.0% | |
| ! | TGGTGTTTGGAATTCGTTCT+TGG | + | chr3_4:77727277-77727296 | Msa0524220:CDS | 40.0% |
| !! | ATTATCGATTTCGGTGACTG+AGG | - | chr3_4:77727359-77727378 | None:intergenic | 40.0% |
| CAGTCACCGAAATCGATAAT+CGG | + | chr3_4:77727359-77727378 | Msa0524220:CDS | 40.0% | |
| TGGACAACAACTCATCTTCA+AGG | - | chr3_4:77727411-77727430 | None:intergenic | 40.0% | |
| CCATTCATCGATAGATGCTT+TGG | - | chr3_4:77727431-77727450 | None:intergenic | 40.0% | |
| ! | CCAAAGCATCTATCGATGAA+TGG | + | chr3_4:77727428-77727447 | Msa0524220:CDS | 40.0% |
| GAGGATTAGGGTTTGAAGAA+GGG | - | chr3_4:77727504-77727523 | None:intergenic | 40.0% | |
| CATCGCTAATAGGAGGATTA+GGG | - | chr3_4:77727516-77727535 | None:intergenic | 40.0% | |
| GATTTCATGGCATCGCTAAT+AGG | - | chr3_4:77727526-77727545 | None:intergenic | 40.0% | |
| TGCTTATGTCTACATTGCTG+TGG | + | chr3_4:77727546-77727565 | Msa0524220:CDS | 40.0% | |
| ATATTCTGTCAACTGCTTGG+AGG | - | chr3_4:77727633-77727652 | None:intergenic | 40.0% | |
| TCCAAGCAGTTGACAGAATA+TGG | + | chr3_4:77727632-77727651 | Msa0524220:CDS | 40.0% | |
| TCCATATTCTGTCAACTGCT+TGG | - | chr3_4:77727636-77727655 | None:intergenic | 40.0% | |
| TTGACAGAATATGGAACCGT+AGG | + | chr3_4:77727641-77727660 | Msa0524220:CDS | 40.0% | |
| !! | TGAAAAGGGAAGCATCGATT+CGG | - | chr3_4:77727726-77727745 | None:intergenic | 40.0% |
| ! | GCATGTATCGTGAGTTGAAA+AGG | - | chr3_4:77727741-77727760 | None:intergenic | 40.0% |
| CTTCATTGTCTGATACCAGA+AGG | + | chr3_4:77727770-77727789 | Msa0524220:CDS | 40.0% | |
| CAACAGAGTGAAGAAAGGAA+GGG | - | chr3_4:77727852-77727871 | None:intergenic | 40.0% | |
| !! | GATTGATTTTGAGCAGCAGA+AGG | - | chr3_4:77727880-77727899 | None:intergenic | 40.0% |
| GTGTCAAGTCAACATTGTGT+CGG | - | chr3_4:77728012-77728031 | None:intergenic | 40.0% | |
| GGTCTCCATGAATCATTCAT+TGG | + | chr3_4:77728199-77728218 | Msa0524220:intron | 40.0% | |
| ! | ATAACTCGGAAAGCGTGAAT+GGG | - | chr3_4:77728272-77728291 | None:intergenic | 40.0% |
| TCTCATATTAGAGTCTCCGA+TGG | + | chr3_4:77728345-77728364 | Msa0524220:intron | 40.0% | |
| TTGTCTTTGTCGAGTTCCAT+CGG | - | chr3_4:77728364-77728383 | None:intergenic | 40.0% | |
| ATGGAACTCGACAAAGACAA+TGG | + | chr3_4:77728364-77728383 | Msa0524220:CDS | 40.0% | |
| AACTCGACAAAGACAATGGA+AGG | + | chr3_4:77728368-77728387 | Msa0524220:CDS | 40.0% | |
| ! | AGAGTCAATTTTGCTACAGC+TGG | - | chr3_4:77728449-77728468 | None:intergenic | 40.0% |
| ! | AAGTGAATCCCCGTTCTTTT+GGG | - | chr3_4:77728488-77728507 | None:intergenic | 40.0% |
| ! | TAAGTGAATCCCCGTTCTTT+TGG | - | chr3_4:77728489-77728508 | None:intergenic | 40.0% |
| ACATCAGACCTTACAATGTC+TGG | - | chr3_4:77728574-77728593 | None:intergenic | 40.0% | |
| AGACATTGTAAGGTCTGATG+TGG | + | chr3_4:77728573-77728592 | Msa0524220:CDS | 40.0% | |
| GGCAATTGAAGACACAAATC+AGG | + | chr3_4:77728594-77728613 | Msa0524220:CDS | 40.0% | |
| TGAGTACGAGCAGAACTATT+TGG | - | chr3_4:77728757-77728776 | None:intergenic | 40.0% | |
| ! | TAGTCACTTTAGTCCCTGAA+TGG | + | chr3_4:77728834-77728853 | Msa0524220:intron | 40.0% |
| ! | AGTCACTTTAGTCCCTGAAT+GGG | + | chr3_4:77728835-77728854 | Msa0524220:intron | 40.0% |
| GACTAACGAAGTCTACATTC+AGG | - | chr3_4:77728975-77728994 | None:intergenic | 40.0% | |
| ! | AGTCACTTTAGTCCCTGAAT+GGG | - | chr3_4:77728835-77728854 | None:intergenic | 40.0% |
| ! | TAGTCACTTTAGTCCCTGAA+TGG | - | chr3_4:77728834-77728853 | None:intergenic | 40.0% |
| AAAATGGAGTCAATGGGAAG+AGG | + | chr3_4:77729358-77729377 | Msa0524220:CDS | 40.0% | |
| GAAGAGGATAATCTAAGGAC+CGG | + | chr3_4:77729374-77729393 | Msa0524220:CDS | 40.0% | |
| GGTAAAAGCAAAAGGAGATG+AGG | - | chr3_4:77729495-77729514 | None:intergenic | 40.0% | |
| TCAGAATTGGAGAAGGAAAC+TGG | + | chr3_4:77729750-77729769 | Msa0524220:intron | 40.0% | |
| ATCAGTTCATGCCAAACAGA+AGG | + | chr3_4:77729980-77729999 | Msa0524220:three_prime_UTR | 40.0% | |
| TCAGTTCATGCCAAACAGAA+GGG | + | chr3_4:77729981-77730000 | Msa0524220:three_prime_UTR | 40.0% | |
| AACGCAATATCAGACACTAC+TGG | - | chr3_4:77730137-77730156 | None:intergenic | 40.0% | |
| TGTCTGATATTGCGTTAGCA+GGG | + | chr3_4:77730141-77730160 | Msa0524220:three_prime_UTR | 40.0% | |
| ATGGATGCTTGAACTTCTCG+AGG | + | chr3_4:77727447-77727466 | Msa0524220:CDS | 45.0% | |
| GGAGGATTAGGGTTTGAAGA+AGG | - | chr3_4:77727505-77727524 | None:intergenic | 45.0% | |
| GCATCGCTAATAGGAGGATT+AGG | - | chr3_4:77727517-77727536 | None:intergenic | 45.0% | |
| TTCATGGCATCGCTAATAGG+AGG | - | chr3_4:77727523-77727542 | None:intergenic | 45.0% | |
| TTGCTGTGGAATGTACCGTT+AGG | + | chr3_4:77727560-77727579 | Msa0524220:CDS | 45.0% | |
| ! | TGCTGCTTCAAGGTACCTAA+CGG | - | chr3_4:77727578-77727597 | None:intergenic | 45.0% |
| CTGCTTGGAGGTAGTGTTTA+GGG | - | chr3_4:77727621-77727640 | None:intergenic | 45.0% | |
| ACTGCTTGGAGGTAGTGTTT+AGG | - | chr3_4:77727622-77727641 | None:intergenic | 45.0% | |
| GAACCGTAGGTTTCAAAACC+TGG | + | chr3_4:77727654-77727673 | Msa0524220:CDS | 45.0% | |
| !!! | CCTCCAGGTTTTGAAACCTA+CGG | - | chr3_4:77727660-77727679 | None:intergenic | 45.0% |
| CGTAGGTTTCAAAACCTGGA+GGG | + | chr3_4:77727658-77727677 | Msa0524220:CDS | 45.0% | |
| GCAAATAACTTCTTCCCTCC+AGG | - | chr3_4:77727675-77727694 | None:intergenic | 45.0% | |
| CTCTTGAATGGCTTTCCTTC+TGG | - | chr3_4:77727788-77727807 | None:intergenic | 45.0% | |
| CAGAAGGAAAGCCATTCAAG+AGG | + | chr3_4:77727786-77727805 | Msa0524220:CDS | 45.0% | |
| GATGCTCGGAATAACCTTGT+AGG | + | chr3_4:77727826-77727845 | Msa0524220:CDS | 45.0% | |
| GCAACAGAGTGAAGAAAGGA+AGG | - | chr3_4:77727853-77727872 | None:intergenic | 45.0% | |
| AGCAGCAACAGAGTGAAGAA+AGG | - | chr3_4:77727857-77727876 | None:intergenic | 45.0% | |
| AAAGCGTGAATGGGGATTCA+GGG | - | chr3_4:77728263-77728282 | None:intergenic | 45.0% | |
| ! | TAACTCGGAAAGCGTGAATG+GGG | - | chr3_4:77728271-77728290 | None:intergenic | 45.0% |
| ! | CATAACTCGGAAAGCGTGAA+TGG | - | chr3_4:77728273-77728292 | None:intergenic | 45.0% |
| CAATGGAAGGCTTAAAGGCA+AGG | + | chr3_4:77728381-77728400 | Msa0524220:CDS | 45.0% | |
| TGACTCTTTGCCAGTTAACG+AGG | + | chr3_4:77728462-77728481 | Msa0524220:CDS | 45.0% | |
| ! | TTCTTTTGGGCCTCGTTAAC+TGG | - | chr3_4:77728475-77728494 | None:intergenic | 45.0% |
| GTTAACGAGGCCCAAAAGAA+CGG | + | chr3_4:77728475-77728494 | Msa0524220:CDS | 45.0% | |
| TTAACGAGGCCCAAAAGAAC+GGG | + | chr3_4:77728476-77728495 | Msa0524220:CDS | 45.0% | |
| CACAAATCAGGAGCCACAAA+TGG | + | chr3_4:77728606-77728625 | Msa0524220:CDS | 45.0% | |
| TTTAGGCAAGCATGTGGGTT+GGG | - | chr3_4:77728658-77728677 | None:intergenic | 45.0% | |
| ATTTAGGCAAGCATGTGGGT+TGG | - | chr3_4:77728659-77728678 | None:intergenic | 45.0% | |
| TGATGAGGCCAATCTTACGA+AGG | + | chr3_4:77728687-77728706 | Msa0524220:CDS | 45.0% | |
| GGAAGTTGCCTTCGTAAGAT+TGG | - | chr3_4:77728698-77728717 | None:intergenic | 45.0% | |
| GACGAATCGTTTCCCATTCA+GGG | - | chr3_4:77728850-77728869 | None:intergenic | 45.0% | |
| TGACGAATCGTTTCCCATTC+AGG | - | chr3_4:77728851-77728870 | None:intergenic | 45.0% | |
| ACTAACGGAGTCTGCATTCA+GGG | - | chr3_4:77728942-77728961 | None:intergenic | 45.0% | |
| AACTAACGGAGTCTGCATTC+AGG | - | chr3_4:77728943-77728962 | None:intergenic | 45.0% | |
| TCCCTGAAATTGACCATGCA+GGG | + | chr3_4:77729002-77729021 | Msa0524220:intron | 45.0% | |
| TCCCTGCATGGTCAATTTCA+GGG | - | chr3_4:77729006-77729025 | None:intergenic | 45.0% | |
| TATGCAAAACAGTCCCTGCA+TGG | - | chr3_4:77729018-77729037 | None:intergenic | 45.0% | |
| ! | GTCACTTTAGTCCCTGAATG+GGG | - | chr3_4:77728836-77728855 | None:intergenic | 45.0% |
| TAGTGGGATGATTCGATCGA+TGG | + | chr3_4:77729215-77729234 | Msa0524220:intron | 45.0% | |
| !! | TGATTCGATCGATGGATTGC+AGG | + | chr3_4:77729223-77729242 | Msa0524220:CDS | 45.0% |
| ATTGCAGGCAGGAACATCAA+GGG | + | chr3_4:77729238-77729257 | Msa0524220:CDS | 45.0% | |
| GAAGAAGCTTTCTCCGTTGA+AGG | + | chr3_4:77729295-77729314 | Msa0524220:CDS | 45.0% | |
| ! | TGGAGAAATTTGAAGCGGTC+TGG | + | chr3_4:77729908-77729927 | Msa0524220:CDS | 45.0% |
| GTGTCTGATATTGCGTTAGC+AGG | + | chr3_4:77730140-77730159 | Msa0524220:three_prime_UTR | 45.0% | |
| TCTAACGCTGCTGGATCGAT+TGG | - | chr3_4:77727214-77727233 | None:intergenic | 50.0% | |
| CTCTTCTCTTCTAACGCTGC+TGG | - | chr3_4:77727223-77727242 | None:intergenic | 50.0% | |
| GGAAAGGTTAGGGTGGTGTT+TGG | + | chr3_4:77727264-77727283 | Msa0524220:CDS | 50.0% | |
| GTTAGGTACCTTGAAGCAGC+AGG | + | chr3_4:77727577-77727596 | Msa0524220:CDS | 50.0% | |
| CCGTAGGTTTCAAAACCTGG+AGG | + | chr3_4:77727657-77727676 | Msa0524220:CDS | 50.0% | |
| GAAGAAAGGAAGGGCCTACA+AGG | - | chr3_4:77727843-77727862 | None:intergenic | 50.0% | |
| !! | CATTGTGTCGGTGTCAGACA+TGG | - | chr3_4:77728000-77728019 | None:intergenic | 50.0% |
| ! | GAAAGCGTGAATGGGGATTC+AGG | - | chr3_4:77728264-77728283 | None:intergenic | 50.0% |
| TAACGAGGCCCAAAAGAACG+GGG | + | chr3_4:77728477-77728496 | Msa0524220:CDS | 50.0% | |
| ! | TAGTTCTGCTCGTACTCACG+AGG | + | chr3_4:77728759-77728778 | Msa0524220:CDS | 50.0% |
| GTCCCTGAAATTGACCATGC+AGG | + | chr3_4:77729001-77729020 | Msa0524220:intron | 50.0% | |
| GTCCCTGCATGGTCAATTTC+AGG | - | chr3_4:77729007-77729026 | None:intergenic | 50.0% | |
| TGACGAATCGTTCCCCATTC+AGG | + | chr3_4:77729061-77729080 | Msa0524220:intron | 50.0% | |
| GACGAATCGTTCCCCATTCA+GGG | + | chr3_4:77729062-77729081 | Msa0524220:intron | 50.0% | |
| GATTGCAGGCAGGAACATCA+AGG | + | chr3_4:77729237-77729256 | Msa0524220:CDS | 50.0% | |
| TTGCAGGCAGGAACATCAAG+GGG | + | chr3_4:77729239-77729258 | Msa0524220:CDS | 50.0% | |
| TTCGTTTGCGTAGTCCAGAG+AGG | + | chr3_4:77729273-77729292 | Msa0524220:CDS | 50.0% | |
| GGAGAAAGCTTCTTCCTCTC+TGG | - | chr3_4:77729290-77729309 | None:intergenic | 50.0% | |
| TACCTTGAAGCAGCAGGTGC+AGG | + | chr3_4:77727583-77727602 | Msa0524220:CDS | 55.0% | |
| !! | TCGATCGATGGATTGCAGGC+AGG | + | chr3_4:77729227-77729246 | Msa0524220:CDS | 55.0% |
| ! | CACCTGCACCTGCTGCTTCA+AGG | - | chr3_4:77727588-77727607 | None:intergenic | 60.0% |
| CTTGAAGCAGCAGGTGCAGG+TGG | + | chr3_4:77727586-77727605 | Msa0524220:CDS | 60.0% | |
| GCGTGAATGGGGATTCAGGG+AGG | - | chr3_4:77728260-77728279 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 77727211 | 77730272 | 77727211 | ID=Msa0524220;Name=Msa0524220 |
| chr3_4 | mRNA | 77727211 | 77730272 | 77727211 | ID=Msa0524220-mRNA-1;Parent=Msa0524220;Name=Msa0524220-mRNA-1;_AED=0.25;_eAED=0.25;_QI=51|1|1|1|1|1|5|332|456 |
| chr3_4 | exon | 77727211 | 77727907 | 77727211 | ID=Msa0524220-mRNA-1:exon:22806;Parent=Msa0524220-mRNA-1 |
| chr3_4 | exon | 77728356 | 77728780 | 77728356 | ID=Msa0524220-mRNA-1:exon:22807;Parent=Msa0524220-mRNA-1 |
| chr3_4 | exon | 77729218 | 77729405 | 77729218 | ID=Msa0524220-mRNA-1:exon:22808;Parent=Msa0524220-mRNA-1 |
| chr3_4 | exon | 77729754 | 77729814 | 77729754 | ID=Msa0524220-mRNA-1:exon:22809;Parent=Msa0524220-mRNA-1 |
| chr3_4 | exon | 77729890 | 77730272 | 77729890 | ID=Msa0524220-mRNA-1:exon:22810;Parent=Msa0524220-mRNA-1 |
| chr3_4 | five_prime_UTR | 77727211 | 77727261 | 77727211 | ID=Msa0524220-mRNA-1:five_prime_utr;Parent=Msa0524220-mRNA-1 |
| chr3_4 | CDS | 77727262 | 77727907 | 77727262 | ID=Msa0524220-mRNA-1:cds;Parent=Msa0524220-mRNA-1 |
| chr3_4 | CDS | 77728356 | 77728780 | 77728356 | ID=Msa0524220-mRNA-1:cds;Parent=Msa0524220-mRNA-1 |
| chr3_4 | CDS | 77729218 | 77729405 | 77729218 | ID=Msa0524220-mRNA-1:cds;Parent=Msa0524220-mRNA-1 |
| chr3_4 | CDS | 77729754 | 77729814 | 77729754 | ID=Msa0524220-mRNA-1:cds;Parent=Msa0524220-mRNA-1 |
| chr3_4 | CDS | 77729890 | 77729940 | 77729890 | ID=Msa0524220-mRNA-1:cds;Parent=Msa0524220-mRNA-1 |
| chr3_4 | three_prime_UTR | 77729941 | 77730272 | 77729941 | ID=Msa0524220-mRNA-1:three_prime_utr;Parent=Msa0524220-mRNA-1 |
| Gene Sequence |
| Protein sequence |
