AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0028640


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0028640 MtrunA17_Chr1g0185261 80.342 234 22 3 1 234 1 210 2.79e-114 327
Msa0028640 MtrunA17_Chr5g0445881 35.391 243 84 7 16 188 61 300 5.87e-21 91.7
Msa0028640 MtrunA17_Chr5g0446181 39.556 225 95 9 16 217 79 285 3.52e-20 88.6
Msa0028640 MtrunA17_Chr5g0445861 47.899 119 51 2 70 177 240 358 3.04e-17 80.5
Msa0028640 MtrunA17_Chr5g0445961 58.025 81 33 1 108 187 320 400 4.62e-17 80.5
Msa0028640 MtrunA17_Chr5g0445771 34.052 232 94 4 16 189 76 306 7.54e-17 79.7
Msa0028640 MtrunA17_Chr5g0445831 36.979 192 80 5 16 169 57 245 1.41e-15 75.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 76 sgRNAs with CRISPR-Local

Find 202 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTATCTTTCTTGAGCTATTT+TGG 0.110071 1_1:+53656306 None:intergenic
GGGGTTGTCCTCTTCCTTGC+AGG 0.198536 1_1:-53655807 Msa0028640:CDS
CTTGAAAGATGTTATCAAAA+TGG 0.217383 1_1:+53656497 None:intergenic
TTCAAAGAACTCAAAATAAT+TGG 0.260116 1_1:-53656274 Msa0028640:CDS
CTCTCGATTATCATCTAATA+TGG 0.273196 1_1:+53653824 None:intergenic
AAAATAATTGGCTCAACTTA+TGG 0.294742 1_1:-53656262 Msa0028640:CDS
AACAAAGAATGTTGAATTAG+AGG 0.303948 1_1:-53656107 Msa0028640:CDS
AGGGACAATGGAGTCTATTC+TGG 0.315823 1_1:-53653987 Msa0028640:CDS
GGAAACTGTGAAGAAGAATT+TGG 0.316676 1_1:-53656086 Msa0028640:CDS
AGTCTGTGGACACGAAGTTC+AGG 0.338708 1_1:-53655991 Msa0028640:CDS
TGAGAAGGATTTGGTTTAGT+TGG 0.339219 1_1:-53653880 Msa0028640:three_prime_UTR
TTGAAAGATGTTATCAAAAT+GGG 0.368916 1_1:+53656498 None:intergenic
CAGACTAGAGGAGCTTTCAT+TGG 0.371001 1_1:-53656395 Msa0028640:CDS
TGAGTTCTTTGAAGAGATCT+TGG 0.373162 1_1:+53656284 None:intergenic
CTTGGTCAAGCAAGCAGGGG+GGG 0.382177 1_1:-53654042 Msa0028640:CDS
TCCATTCACAGACTTTGAAA+TGG 0.406297 1_1:-53656452 Msa0028640:exon
ATAAAGCAGAAAAGAGGAAA+AGG 0.411906 1_1:-53654068 Msa0028640:CDS
GGGAGCTTGGTCAAGCAAGC+AGG 0.419342 1_1:-53654047 Msa0028640:CDS
TTTCTTTGTTAAAAGTTCAA+TGG 0.428054 1_1:+53656234 None:intergenic
TTGTTGTACTGAGAAGGATT+TGG 0.437515 1_1:-53653889 Msa0028640:three_prime_UTR
AAGTGAAGCGGCCCTTCAAA+TGG 0.442528 1_1:+53656421 None:intergenic
TCGATTTGTGCTTGGTTGGT+TGG 0.452174 1_1:+53656524 None:intergenic
TTTGTATAAATGTACTATGA+TGG 0.452926 1_1:-53653926 Msa0028640:three_prime_UTR
ATGGAGATACTTCCATTTGA+AGG 0.456578 1_1:-53656433 Msa0028640:CDS
AGCTTGGTCAAGCAAGCAGG+GGG 0.456829 1_1:-53654044 Msa0028640:CDS
TTGTGCTTGGTTGGTTGGAT+TGG 0.463061 1_1:+53656529 None:intergenic
GAGGAAAGAAAACAGCAAAC+TGG 0.467949 1_1:-53656047 Msa0028640:CDS
TCCATTTCAAAGTCTGTGAA+TGG 0.474011 1_1:+53656451 None:intergenic
GGGTTGTCCTCTTCCTTGCA+GGG 0.478879 1_1:-53655806 Msa0028640:intron
GGAGCTTGGTCAAGCAAGCA+GGG 0.482799 1_1:-53654046 Msa0028640:CDS
GAGCTTGGTCAAGCAAGCAG+GGG 0.482943 1_1:-53654045 Msa0028640:CDS
AGAGTTCGCTAAAAGAGAAA+AGG 0.488955 1_1:-53656344 Msa0028640:CDS
AGAAGAGAAAAGACTGTTGA+GGG 0.497617 1_1:-53654006 Msa0028640:CDS
TTCAGAAATGGCGCTGTGGA+GGG 0.500430 1_1:-53655827 Msa0028640:CDS
TAAAGCAGAAAAGAGGAAAA+GGG 0.510608 1_1:-53654067 Msa0028640:CDS
TTCTGAAGACAAAGATGAAG+AGG 0.512091 1_1:-53655867 Msa0028640:CDS
GAAAAGAGGAAAAGGGAGCT+TGG 0.519790 1_1:-53654060 Msa0028640:CDS
GGAGTCTGATGTTGATCCTA+TGG 0.524968 1_1:-53655897 Msa0028640:CDS
GAACTCTGACTCAACATGTA+TGG 0.529103 1_1:+53656360 None:intergenic
GTCTGTGGACACGAAGTTCA+GGG 0.534295 1_1:-53655990 Msa0028640:CDS
GTCTACACTCATCAAACGTT+CGG 0.535938 1_1:+53655931 None:intergenic
GCTTGGTCAAGCAAGCAGGG+GGG 0.538428 1_1:-53654043 Msa0028640:CDS
GCATGAAAGAGTAGCGAGGT+TGG 0.539040 1_1:-53655963 Msa0028640:CDS
TATGACTATGACTATGACTA+CGG 0.539460 1_1:-53656151 Msa0028640:CDS
GTTCAGAAATGGCGCTGTGG+AGG 0.545156 1_1:-53655828 Msa0028640:CDS
GATGACTGTGAGTTCAGAAA+TGG 0.547831 1_1:-53655839 Msa0028640:CDS
ACTCAACATGTATGGTTGAA+AGG 0.549288 1_1:+53656368 None:intergenic
AAAAGACTGTTGAGGGACAA+TGG 0.553403 1_1:-53653999 Msa0028640:CDS
GGTTCAAGTCAAGAAATTGA+AGG 0.561506 1_1:-53656197 Msa0028640:CDS
TCTTCAGAAGCAGCAACCAT+AGG 0.563243 1_1:+53655881 None:intergenic
ATGAGTGTAGACGACTCTGA+AGG 0.563977 1_1:-53655920 Msa0028640:CDS
TGGAGATACTTCCATTTGAA+GGG 0.564385 1_1:-53656432 Msa0028640:CDS
AGACTCACCCTGCAAGGAAG+AGG 0.565003 1_1:+53655799 None:intergenic
GTTGTGATTCTTGATATGCC+AGG 0.569626 1_1:-53653965 Msa0028640:exon
TCAGAAATGGCGCTGTGGAG+GGG 0.569883 1_1:-53655826 Msa0028640:CDS
AAATCTATAAAGCAGAAAAG+AGG 0.570733 1_1:-53654074 Msa0028640:CDS
TGAGAAATTGCTCAAGTCTG+TGG 0.574071 1_1:-53656005 Msa0028640:CDS
TGAGTGTAGACGACTCTGAA+GGG 0.584377 1_1:-53655919 Msa0028640:CDS
AAATATAGTAGATTCTAGCC+TGG 0.584871 1_1:+53653947 None:intergenic
AGATGGAGACTCACCCTGCA+AGG 0.586923 1_1:+53655793 None:intergenic
TTTCAAAGTCTGTGAATGGA+AGG 0.589355 1_1:+53656455 None:intergenic
AACTGGAAGATGAGAAACGC+GGG 0.589875 1_1:-53656030 Msa0028640:CDS
TTGAAGGGTGTTGATGATGA+AGG 0.597645 1_1:-53656181 Msa0028640:CDS
CAAAGTCTGTGAATGGAAGG+TGG 0.611681 1_1:+53656458 None:intergenic
GTTCAAGTCAAGAAATTGAA+GGG 0.613693 1_1:-53656196 Msa0028640:CDS
GCTTCACTTTGACAGACTAG+AGG 0.616458 1_1:-53656407 Msa0028640:CDS
TCTAGTCTGTCAAAGTGAAG+CGG 0.619726 1_1:+53656409 None:intergenic
TGAAAGAGTAGCGAGGTTGG+AGG 0.624900 1_1:-53655960 Msa0028640:CDS
AAGAAGAGAAAAGACTGTTG+AGG 0.630842 1_1:-53654007 Msa0028640:CDS
GAGTGTAGACGACTCTGAAG+GGG 0.636018 1_1:-53655918 Msa0028640:CDS
TCTGTGGACACGAAGTTCAG+GGG 0.655793 1_1:-53655989 Msa0028640:CDS
TGGCAACTATAAGCGAGCTG+AGG 0.694355 1_1:-53656066 Msa0028640:CDS
TGAGTTCAGAAATGGCGCTG+TGG 0.712136 1_1:-53655831 Msa0028640:CDS
GACTGCATGAAAGAGTAGCG+AGG 0.721557 1_1:-53655967 Msa0028640:CDS
AAACTGGAAGATGAGAAACG+CGG 0.745275 1_1:-53656031 Msa0028640:CDS
ACTGGAAGATGAGAAACGCG+GGG 0.746758 1_1:-53656029 Msa0028640:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTCAATTAAGATTACAT+GGG + chr1_1:53654870-53654889 None:intergenic 15.0%
!!! TTTTTTCAATTAAGATTACA+TGG + chr1_1:53654871-53654890 None:intergenic 15.0%
!!! CATTTCATATTTTTTTTTGA+AGG - chr1_1:53654924-53654943 Msa0028640:intron 15.0%
!!! AAATTTGTTGATTGAATTTA+CGG + chr1_1:53655001-53655020 None:intergenic 15.0%
!! GTAAAAAAATAGTATTTAAC+CGG + chr1_1:53655092-53655111 None:intergenic 15.0%
!!! GATAAAAAAGAACAATTTTA+AGG + chr1_1:53655610-53655629 None:intergenic 15.0%
!!! GTCTAATAGATTATTTTTTT+TGG + chr1_1:53655811-53655830 None:intergenic 15.0%
!! TTGAAAGATGTTATCAAAAT+GGG + chr1_1:53653865-53653884 None:intergenic 20.0%
!! TTCAAAGAACTCAAAATAAT+TGG - chr1_1:53654086-53654105 Msa0028640:intron 20.0%
!! TTTCTTTGTTAAAAGTTCAA+TGG + chr1_1:53654129-53654148 None:intergenic 20.0%
!! TGATTAAAAAAATGTCTGTT+TGG - chr1_1:53654720-53654739 Msa0028640:intron 20.0%
!! TATTCAAATCAACAAATGAA+TGG + chr1_1:53655171-53655190 None:intergenic 20.0%
!!! TCATTTGTTGATTTGAATAT+CGG - chr1_1:53655172-53655191 Msa0028640:intron 20.0%
!! TCATATTGATAAAGGTAAAT+TGG - chr1_1:53655198-53655217 Msa0028640:intron 20.0%
!! CATATTGATAAAGGTAAATT+GGG - chr1_1:53655199-53655218 Msa0028640:intron 20.0%
!! AAGTTTATAACTTGATAGAA+TGG - chr1_1:53655240-53655259 Msa0028640:intron 20.0%
!! TAATTGCTACATAATTAAAC+TGG + chr1_1:53655276-53655295 None:intergenic 20.0%
!! TGTTATTAGTGTATTATTAG+AGG - chr1_1:53655853-53655872 Msa0028640:CDS 20.0%
!! GTTATTAGTGTATTATTAGA+GGG - chr1_1:53655854-53655873 Msa0028640:CDS 20.0%
!! TTATTAGTGTATTATTAGAG+GGG - chr1_1:53655855-53655874 Msa0028640:CDS 20.0%
!! TTTGTATAAATGTACTATGA+TGG - chr1_1:53656434-53656453 Msa0028640:CDS 20.0%
! CTTGAAAGATGTTATCAAAA+TGG + chr1_1:53653866-53653885 None:intergenic 25.0%
!! AAAATAATTGGCTCAACTTA+TGG - chr1_1:53654098-53654117 Msa0028640:intron 25.0%
! AAAGAAAAACAATGAATTGC+AGG - chr1_1:53654142-53654161 Msa0028640:intron 25.0%
! AACAAAGAATGTTGAATTAG+AGG - chr1_1:53654253-53654272 Msa0028640:intron 25.0%
! TTGTGGGTCTATTTAATAAA+GGG - chr1_1:53654643-53654662 Msa0028640:intron 25.0%
! TATTTAATAAAGGGTCTGTT+TGG - chr1_1:53654652-53654671 Msa0028640:intron 25.0%
! CGGTCTTTGATAAAATATAA+CGG + chr1_1:53654981-53655000 None:intergenic 25.0%
! ATTCTAGTGTAAAGACATTT+AGG + chr1_1:53655124-53655143 None:intergenic 25.0%
! ATCACAATACACTAATAACA+AGG + chr1_1:53655419-53655438 None:intergenic 25.0%
!!! ACTGTTTTAAATTCAGTTGT+TGG - chr1_1:53655440-53655459 Msa0028640:intron 25.0%
!!! CTGTTTTAAATTCAGTTGTT+GGG - chr1_1:53655441-53655460 Msa0028640:intron 25.0%
!!! TGTTTTAAATTCAGTTGTTG+GGG - chr1_1:53655442-53655461 Msa0028640:intron 25.0%
! TTCATTGCATAAAACATCAT+AGG - chr1_1:53655660-53655679 Msa0028640:intron 25.0%
! AATAATCTATTAGACTCCTT+CGG - chr1_1:53655816-53655835 Msa0028640:CDS 25.0%
! AAATCTATAAAGCAGAAAAG+AGG - chr1_1:53656286-53656305 Msa0028640:CDS 25.0%
! GTATCTTTCTTGAGCTATTT+TGG + chr1_1:53654057-53654076 None:intergenic 30.0%
GTTCAAGTCAAGAAATTGAA+GGG - chr1_1:53654164-53654183 Msa0028640:intron 30.0%
TATGACTATGACTATGACTA+CGG - chr1_1:53654209-53654228 Msa0028640:intron 30.0%
ACAACACAAACACTAATTGA+GGG + chr1_1:53654627-53654646 None:intergenic 30.0%
TCAATTAGTGTTTGTGTTGT+GGG - chr1_1:53654627-53654646 Msa0028640:intron 30.0%
GTTGTGGGTCTATTTAATAA+AGG - chr1_1:53654642-53654661 Msa0028640:intron 30.0%
!! AAAGACATTTAGGCTTTGTT+TGG + chr1_1:53655114-53655133 None:intergenic 30.0%
AATGTCTTTACACTAGAATG+TGG - chr1_1:53655125-53655144 Msa0028640:intron 30.0%
ATCGGTGATCATATTGATAA+AGG - chr1_1:53655190-53655209 Msa0028640:intron 30.0%
GTAAATTGGGCTAAATCTAA+GGG - chr1_1:53655212-53655231 Msa0028640:intron 30.0%
! TTTCAAGACCATTTTGTGAA+TGG - chr1_1:53655296-53655315 Msa0028640:intron 30.0%
ATTAGATGCCATTCACAAAA+TGG + chr1_1:53655307-53655326 None:intergenic 30.0%
AGTGATAACAGATAATAGTG+TGG - chr1_1:53655349-53655368 Msa0028640:intron 30.0%
CTTTGAATGTACTCTGATTT+AGG + chr1_1:53655556-53655575 None:intergenic 30.0%
CTAAATCAGAGTACATTCAA+AGG - chr1_1:53655554-53655573 Msa0028640:intron 30.0%
!! AGAACCCTAGTTTGATTTTT+AGG - chr1_1:53655696-53655715 Msa0028640:intron 30.0%
TCCACCTAAAAATCAAACTA+GGG + chr1_1:53655703-53655722 None:intergenic 30.0%
TTCCACCTAAAAATCAAACT+AGG + chr1_1:53655704-53655723 None:intergenic 30.0%
ATAATCTATTAGACTCCTTC+GGG - chr1_1:53655817-53655836 Msa0028640:CDS 30.0%
CTTTCATTCACACAAAACTT+TGG + chr1_1:53656031-53656050 None:intergenic 30.0%
!! GTGTATGACTTAATTTGTGT+TGG - chr1_1:53656107-53656126 Msa0028640:CDS 30.0%
ATAAAGCAGAAAAGAGGAAA+AGG - chr1_1:53656292-53656311 Msa0028640:CDS 30.0%
TAAAGCAGAAAAGAGGAAAA+GGG - chr1_1:53656293-53656312 Msa0028640:CDS 30.0%
AAATATAGTAGATTCTAGCC+TGG + chr1_1:53656416-53656435 None:intergenic 30.0%
CTCTCGATTATCATCTAATA+TGG + chr1_1:53656539-53656558 None:intergenic 30.0%
TTTCAAAGTCTGTGAATGGA+AGG + chr1_1:53653908-53653927 None:intergenic 35.0%
! TCCATTCACAGACTTTGAAA+TGG - chr1_1:53653908-53653927 Msa0028640:three_prime_UTR 35.0%
TCCATTTCAAAGTCTGTGAA+TGG + chr1_1:53653912-53653931 None:intergenic 35.0%
ATGGAGATACTTCCATTTGA+AGG - chr1_1:53653927-53653946 Msa0028640:three_prime_UTR 35.0%
TGGAGATACTTCCATTTGAA+GGG - chr1_1:53653928-53653947 Msa0028640:three_prime_UTR 35.0%
ACTCAACATGTATGGTTGAA+AGG + chr1_1:53653995-53654014 None:intergenic 35.0%
AGAGTTCGCTAAAAGAGAAA+AGG - chr1_1:53654016-53654035 Msa0028640:CDS 35.0%
! TGAGTTCTTTGAAGAGATCT+TGG + chr1_1:53654079-53654098 None:intergenic 35.0%
GGTTCAAGTCAAGAAATTGA+AGG - chr1_1:53654163-53654182 Msa0028640:intron 35.0%
GGAAACTGTGAAGAAGAATT+TGG - chr1_1:53654274-53654293 Msa0028640:intron 35.0%
! TTCTGAAGACAAAGATGAAG+AGG - chr1_1:53654493-53654512 Msa0028640:intron 35.0%
CAACACAAACACTAATTGAG+GGG + chr1_1:53654626-53654645 None:intergenic 35.0%
CACAACACAAACACTAATTG+AGG + chr1_1:53654628-53654647 None:intergenic 35.0%
CTCAATTAGTGTTTGTGTTG+TGG - chr1_1:53654626-53654645 Msa0028640:intron 35.0%
! GCTTTAAGCTACTAGTTACT+TGG + chr1_1:53654816-53654835 None:intergenic 35.0%
!! TATAGCGGATAGACTTATAG+TGG + chr1_1:53655059-53655078 None:intergenic 35.0%
GGTAAATTGGGCTAAATCTA+AGG - chr1_1:53655211-53655230 Msa0028640:intron 35.0%
!! AAATTTGATGATGTCCGTTG+TGG - chr1_1:53655385-53655404 Msa0028640:intron 35.0%
!! ACCCTAGTTTGATTTTTAGG+TGG - chr1_1:53655699-53655718 Msa0028640:intron 35.0%
TAGTGTATTATTAGAGGGGA+TGG - chr1_1:53655859-53655878 Msa0028640:CDS 35.0%
AGTGTATTATTAGAGGGGAT+GGG - chr1_1:53655860-53655879 Msa0028640:CDS 35.0%
! TGGCAGCAAAGATCAAATTT+TGG - chr1_1:53655890-53655909 Msa0028640:CDS 35.0%
TGATTTAACCTCATATCCCT+TGG - chr1_1:53655999-53656018 Msa0028640:CDS 35.0%
GATTTAACCTCATATCCCTT+GGG - chr1_1:53656000-53656019 Msa0028640:CDS 35.0%
! AAAACTTTGGCTTAACCCAA+GGG + chr1_1:53656018-53656037 None:intergenic 35.0%
AGTACGAAGCTGTCATAATA+CGG + chr1_1:53656160-53656179 None:intergenic 35.0%
CATAAGGCAATGAGATTAGT+GGG + chr1_1:53656230-53656249 None:intergenic 35.0%
TTAACCTAGTAAGCACCATA+AGG + chr1_1:53656246-53656265 None:intergenic 35.0%
TTAATGAACTTCATGTCTGC+AGG - chr1_1:53656262-53656281 Msa0028640:CDS 35.0%
AAGAAGAGAAAAGACTGTTG+AGG - chr1_1:53656353-53656372 Msa0028640:CDS 35.0%
AGAAGAGAAAAGACTGTTGA+GGG - chr1_1:53656354-53656373 Msa0028640:CDS 35.0%
!! GTCATTTTGTTGTACTGAGA+AGG - chr1_1:53656465-53656484 Msa0028640:five_prime_UTR 35.0%
TTGTTGTACTGAGAAGGATT+TGG - chr1_1:53656471-53656490 Msa0028640:five_prime_UTR 35.0%
! TGAGAAGGATTTGGTTTAGT+TGG - chr1_1:53656480-53656499 Msa0028640:five_prime_UTR 35.0%
!! GTTTTCGATTTGTGCTTGGT+TGG + chr1_1:53653843-53653862 None:intergenic 40.0%
!! ATGGGTTTTCGATTTGTGCT+TGG + chr1_1:53653847-53653866 None:intergenic 40.0%
GGAAGGTGGAAGTGAAAAAA+GGG + chr1_1:53653891-53653910 None:intergenic 40.0%
TGGAAGGTGGAAGTGAAAAA+AGG + chr1_1:53653892-53653911 None:intergenic 40.0%
TCTAGTCTGTCAAAGTGAAG+CGG + chr1_1:53653954-53653973 None:intergenic 40.0%
GAACTCTGACTCAACATGTA+TGG + chr1_1:53654003-53654022 None:intergenic 40.0%
!! TTGAAGGGTGTTGATGATGA+AGG - chr1_1:53654179-53654198 Msa0028640:intron 40.0%
GAGGAAAGAAAACAGCAAAC+TGG - chr1_1:53654313-53654332 Msa0028640:intron 40.0%
AAACTGGAAGATGAGAAACG+CGG - chr1_1:53654329-53654348 Msa0028640:intron 40.0%
TGAGAAATTGCTCAAGTCTG+TGG - chr1_1:53654355-53654374 Msa0028640:intron 40.0%
GTCTACACTCATCAAACGTT+CGG + chr1_1:53654432-53654451 None:intergenic 40.0%
GATGACTGTGAGTTCAGAAA+TGG - chr1_1:53654521-53654540 Msa0028640:intron 40.0%
! ATAAGCTCGTGAGAAAGTGT+CGG + chr1_1:53654749-53654768 None:intergenic 40.0%
AATTGGGCTAAATCTAAGGG+TGG - chr1_1:53655215-53655234 Msa0028640:intron 40.0%
ATTGGGCTAAATCTAAGGGT+GGG - chr1_1:53655216-53655235 Msa0028640:intron 40.0%
ACAAGGAATCACTTCCACAA+CGG + chr1_1:53655402-53655421 None:intergenic 40.0%
CACAACTGTATAGCACGATA+AGG + chr1_1:53655515-53655534 None:intergenic 40.0%
CTTATCGTGCTATACAGTTG+TGG - chr1_1:53655513-53655532 Msa0028640:intron 40.0%
CGACCAAACTCCAGATAATT+AGG - chr1_1:53655753-53655772 Msa0028640:intron 40.0%
! GGTCCTAATTATCTGGAGTT+TGG + chr1_1:53655759-53655778 None:intergenic 40.0%
GTGTATTATTAGAGGGGATG+GGG - chr1_1:53655861-53655880 Msa0028640:CDS 40.0%
! CAAAACTTTGGCTTAACCCA+AGG + chr1_1:53656019-53656038 None:intergenic 40.0%
CCATAAGGCAATGAGATTAG+TGG + chr1_1:53656231-53656250 None:intergenic 40.0%
CCACTAATCTCATTGCCTTA+TGG - chr1_1:53656228-53656247 Msa0028640:CDS 40.0%
ATTGCCTTATGGTGCTTACT+AGG - chr1_1:53656239-53656258 Msa0028640:CDS 40.0%
AAAAGACTGTTGAGGGACAA+TGG - chr1_1:53656361-53656380 Msa0028640:CDS 40.0%
GTTGTGATTCTTGATATGCC+AGG - chr1_1:53656395-53656414 Msa0028640:CDS 40.0%
! TTGTGCTTGGTTGGTTGGAT+TGG + chr1_1:53653834-53653853 None:intergenic 45.0%
! TCGATTTGTGCTTGGTTGGT+TGG + chr1_1:53653839-53653858 None:intergenic 45.0%
CAAAGTCTGTGAATGGAAGG+TGG + chr1_1:53653905-53653924 None:intergenic 45.0%
GCTTCACTTTGACAGACTAG+AGG - chr1_1:53653953-53653972 Msa0028640:three_prime_UTR 45.0%
CAGACTAGAGGAGCTTTCAT+TGG - chr1_1:53653965-53653984 Msa0028640:exon 45.0%
AACTGGAAGATGAGAAACGC+GGG - chr1_1:53654330-53654349 Msa0028640:intron 45.0%
ATGAGTGTAGACGACTCTGA+AGG - chr1_1:53654440-53654459 Msa0028640:intron 45.0%
TGAGTGTAGACGACTCTGAA+GGG - chr1_1:53654441-53654460 Msa0028640:intron 45.0%
GGAGTCTGATGTTGATCCTA+TGG - chr1_1:53654463-53654482 Msa0028640:intron 45.0%
TCTTCAGAAGCAGCAACCAT+AGG + chr1_1:53654482-53654501 None:intergenic 45.0%
!! TCCATCTCTAGGATGTGCAT+AGG - chr1_1:53654583-53654602 Msa0028640:intron 45.0%
ACCTATGCACATCCTAGAGA+TGG + chr1_1:53654587-53654606 None:intergenic 45.0%
GACACTTTCTCACGAGCTTA+TGG - chr1_1:53654748-53654767 Msa0028640:intron 45.0%
! TCCGCTATAAGCTAGCTTAC+CGG - chr1_1:53655070-53655089 Msa0028640:intron 45.0%
! ACCGGTAAGCTAGCTTATAG+CGG + chr1_1:53655074-53655093 None:intergenic 45.0%
CTACTGAAGGTCAAGATAGG+AGG + chr1_1:53655474-53655493 None:intergenic 45.0%
CTCCTATCTTGACCTTCAGT+AGG - chr1_1:53655472-53655491 Msa0028640:intron 45.0%
CACCTACTGAAGGTCAAGAT+AGG + chr1_1:53655477-53655496 None:intergenic 45.0%
! TTATCTGGAGTTTGGTCGTG+AGG + chr1_1:53655751-53655770 None:intergenic 45.0%
TGTTAACCCTCCGATTTCCA+GGG + chr1_1:53655788-53655807 None:intergenic 45.0%
ATCTATTAGACTCCTTCGGG+AGG - chr1_1:53655820-53655839 Msa0028640:CDS 45.0%
TCTATTAGACTCCTTCGGGA+GGG - chr1_1:53655821-53655840 Msa0028640:CDS 45.0%
TATACCTGTGATGTCCCTGA+AGG + chr1_1:53655956-53655975 None:intergenic 45.0%
GAAAAGAGGAAAAGGGAGCT+TGG - chr1_1:53656300-53656319 Msa0028640:CDS 45.0%
AGGGACAATGGAGTCTATTC+TGG - chr1_1:53656373-53656392 Msa0028640:CDS 45.0%
AAGTGAAGCGGCCCTTCAAA+TGG + chr1_1:53653942-53653961 None:intergenic 50.0%
TGGCAACTATAAGCGAGCTG+AGG - chr1_1:53654294-53654313 Msa0028640:intron 50.0%
ACTGGAAGATGAGAAACGCG+GGG - chr1_1:53654331-53654350 Msa0028640:intron 50.0%
AGTCTGTGGACACGAAGTTC+AGG - chr1_1:53654369-53654388 Msa0028640:intron 50.0%
GTCTGTGGACACGAAGTTCA+GGG - chr1_1:53654370-53654389 Msa0028640:intron 50.0%
TCTGTGGACACGAAGTTCAG+GGG - chr1_1:53654371-53654390 Msa0028640:intron 50.0%
GACTGCATGAAAGAGTAGCG+AGG - chr1_1:53654393-53654412 Msa0028640:intron 50.0%
GCATGAAAGAGTAGCGAGGT+TGG - chr1_1:53654397-53654416 Msa0028640:intron 50.0%
TGAAAGAGTAGCGAGGTTGG+AGG - chr1_1:53654400-53654419 Msa0028640:intron 50.0%
! GAGTGTAGACGACTCTGAAG+GGG - chr1_1:53654442-53654461 Msa0028640:intron 50.0%
TGAGTTCAGAAATGGCGCTG+TGG - chr1_1:53654529-53654548 Msa0028640:intron 50.0%
TTCAGAAATGGCGCTGTGGA+GGG - chr1_1:53654533-53654552 Msa0028640:intron 50.0%
GCTTGCATTGCACCTACTGA+AGG + chr1_1:53655487-53655506 None:intergenic 50.0%
TCAGTAGGTGCAATGCAAGC+TGG - chr1_1:53655487-53655506 Msa0028640:intron 50.0%
GTTAACCCTCCGATTTCCAG+GGG + chr1_1:53655787-53655806 None:intergenic 50.0%
GTGTTAACCCTCCGATTTCC+AGG + chr1_1:53655789-53655808 None:intergenic 50.0%
CTATTAGACTCCTTCGGGAG+GGG - chr1_1:53655822-53655841 Msa0028640:CDS 50.0%
TATTAGACTCCTTCGGGAGG+GGG - chr1_1:53655823-53655842 Msa0028640:CDS 50.0%
TAGAGGGGATGGGGAAATCT+TGG - chr1_1:53655870-53655889 Msa0028640:CDS 50.0%
ATAAAGGGTTGGGACGTCGA+AGG + chr1_1:53655920-53655939 None:intergenic 50.0%
GTCCCAACCCTTTATCCACT+GGG - chr1_1:53655925-53655944 Msa0028640:CDS 50.0%
AGCCCAGTGGATAAAGGGTT+GGG + chr1_1:53655930-53655949 None:intergenic 50.0%
TAGCCCAGTGGATAAAGGGT+TGG + chr1_1:53655931-53655950 None:intergenic 50.0%
GGTGTAGCCCAGTGGATAAA+GGG + chr1_1:53655935-53655954 None:intergenic 50.0%
AGGTGTAGCCCAGTGGATAA+AGG + chr1_1:53655936-53655955 None:intergenic 50.0%
TACACCTTCAGGGACATCAC+AGG - chr1_1:53655949-53655968 Msa0028640:CDS 50.0%
GGCTTAACCCAAGGGATATG+AGG + chr1_1:53656010-53656029 None:intergenic 50.0%
GTTCAGAAATGGCGCTGTGG+AGG - chr1_1:53654532-53654551 Msa0028640:intron 55.0%
TCAGAAATGGCGCTGTGGAG+GGG - chr1_1:53654534-53654553 Msa0028640:intron 55.0%
GGGTTGTCCTCTTCCTTGCA+GGG - chr1_1:53654554-53654573 Msa0028640:intron 55.0%
AGACTCACCCTGCAAGGAAG+AGG + chr1_1:53654564-53654583 None:intergenic 55.0%
AGATGGAGACTCACCCTGCA+AGG + chr1_1:53654570-53654589 None:intergenic 55.0%
CAGGGTGAGTCTCCATCTCT+AGG - chr1_1:53654572-53654591 Msa0028640:intron 55.0%
CTGGAGTTTGGTCGTGAGGT+AGG + chr1_1:53655747-53655766 None:intergenic 55.0%
GGACGGCGGTCCTAATTATC+TGG + chr1_1:53655766-53655785 None:intergenic 55.0%
CAAACATTTCCCCCTCCCGA+AGG + chr1_1:53655835-53655854 None:intergenic 55.0%
CGTCCCAACCCTTTATCCAC+TGG - chr1_1:53655924-53655943 Msa0028640:CDS 55.0%
ATCCACTGGGCTACACCTTC+AGG - chr1_1:53655938-53655957 Msa0028640:CDS 55.0%
TCCACTGGGCTACACCTTCA+GGG - chr1_1:53655939-53655958 Msa0028640:CDS 55.0%
GGAGCTTGGTCAAGCAAGCA+GGG - chr1_1:53656314-53656333 Msa0028640:CDS 55.0%
GAGCTTGGTCAAGCAAGCAG+GGG - chr1_1:53656315-53656334 Msa0028640:CDS 55.0%
AGCTTGGTCAAGCAAGCAGG+GGG - chr1_1:53656316-53656335 Msa0028640:CDS 55.0%
GGGGTTGTCCTCTTCCTTGC+AGG - chr1_1:53654553-53654572 Msa0028640:intron 60.0%
TAATTAGGACCGCCGTCCCC+TGG - chr1_1:53655768-53655787 Msa0028640:intron 60.0%
ACCCTCCGATTTCCAGGGGA+CGG + chr1_1:53655783-53655802 None:intergenic 60.0%
AAGGGTTGGGACGTCGAAGG+AGG + chr1_1:53655917-53655936 None:intergenic 60.0%
! TCCCTGAAGGTGTAGCCCAG+TGG + chr1_1:53655943-53655962 None:intergenic 60.0%
GGGAGCTTGGTCAAGCAAGC+AGG - chr1_1:53656313-53656332 Msa0028640:CDS 60.0%
GCTTGGTCAAGCAAGCAGGG+GGG - chr1_1:53656317-53656336 Msa0028640:CDS 60.0%
CTTGGTCAAGCAAGCAGGGG+GGG - chr1_1:53656318-53656337 Msa0028640:CDS 60.0%
TTGGTCAAGCAAGCAGGGGG+GGG - chr1_1:53656319-53656338 Msa0028640:CDS 60.0%
GACCGCCGTCCCCTGGAAAT+CGG - chr1_1:53655775-53655794 Msa0028640:intron 65.0%
CTCCGATTTCCAGGGGACGG+CGG + chr1_1:53655780-53655799 None:intergenic 65.0%
GCCGTCCCCTGGAAATCGGA+GGG - chr1_1:53655779-53655798 Msa0028640:intron 65.0%
CGCCGTCCCCTGGAAATCGG+AGG - chr1_1:53655778-53655797 Msa0028640:intron 70.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 53653817 53656565 53653817 ID=Msa0028640;Name=Msa0028640
chr1_1 mRNA 53653817 53656565 53653817 ID=Msa0028640-mRNA-1;Parent=Msa0028640;Name=Msa0028640-mRNA-1;_AED=0.00;_eAED=0.00;_QI=110|1|1|1|0|1|2|157|257
chr1_1 exon 53653817 53654098 53653817 ID=Msa0028640-mRNA-1:exon:15841;Parent=Msa0028640-mRNA-1
chr1_1 exon 53655807 53656565 53655807 ID=Msa0028640-mRNA-1:exon:15840;Parent=Msa0028640-mRNA-1
chr1_1 five_prime_UTR 53656456 53656565 53656456 ID=Msa0028640-mRNA-1:five_prime_utr;Parent=Msa0028640-mRNA-1
chr1_1 CDS 53655807 53656455 53655807 ID=Msa0028640-mRNA-1:cds;Parent=Msa0028640-mRNA-1
chr1_1 CDS 53653974 53654098 53653974 ID=Msa0028640-mRNA-1:cds;Parent=Msa0028640-mRNA-1
chr1_1 three_prime_UTR 53653817 53653973 53653817 ID=Msa0028640-mRNA-1:three_prime_utr;Parent=Msa0028640-mRNA-1
Gene Sequence

>Msa0028640

ATGGAGATACTTCCATTTGAAGGGCCGCTTCACTTTGACAGACTAGAGGAGCTTTCATTGGAGAGCCTTTCAACCATACATGTTGAGTCAGAGTTCGCTAAAAGAGAAAAGGAACTATCTTTGAAAGCCAAAATAGCTCAAGAAAGATACCAAGATCTCTTCAAAGAACTCAAAATAATTGGCTCAACTTATGGTAAAACCATTGAACTTTTAACAAAGAAAAACAATGAATTGCAGGTTCAAGTCAAGAAATTGAAGGGTGTTGATGATGAAGGTAGTAGCTATGACTATGACTATGACTACGGTTACGAACTTGATGTGTTAAGAACAAAGAATGTTGAATTAGAGGAAACTGTGAAGAAGAATTTGGCAACTATAAGCGAGCTGAGGAAAGAAAACAGCAAACTGGAAGATGAGAAACGCGGGGTTGAGAAATTGCTCAAGTCTGTGGACACGAAGTTCAGGGGACTGCATGAAAGAGTAGCGAGGTTGGAGGATGATACCGAACGTTTGATGAGTGTAGACGACTCTGAAGGGGAGTCTGATGTTGATCCTATGGTTGCTGCTTCTGAAGACAAAGATGAAGAGGATGTTGATGACTGTGAGTTCAGAAATGGCGCTGTGGAGGGGTTGTCCTCTTCCTTGCAGGGCAAATCTATAAAGCAGAAAAGAGGAAAAGGGAGCTTGGTCAAGCAAGCAGGGGGGGGAAATTATGTTGAAGAAGAGAAAAGACTGTTGAGGGACAATGGAGTCTATTCTGGTTGTGATTCTTGA

Protein sequence

>Msa0028640

MEILPFEGPLHFDRLEELSLESLSTIHVESEFAKREKELSLKAKIAQERYQDLFKELKIIGSTYGKTIELLTKKNNELQVQVKKLKGVDDEGSSYDYDYDYGYELDVLRTKNVELEETVKKNLATISELRKENSKLEDEKRGVEKLLKSVDTKFRGLHERVARLEDDTERLMSVDDSEGESDVDPMVAASEDKDEEDVDDCEFRNGAVEGLSSSLQGKSIKQKRGKGSLVKQAGGGNYVEEEKRLLRDNGVYSGCDS*