AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0129790

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0129790 MtrunA17_Chr1g0196931 92.945 1375 72 4 1 1375 1 1350 0.0 2204
Msa0129790 MtrunA17_Chr1g0170381 48.373 1414 523 41 18 1375 19 1281 0.0 912
Msa0129790 MtrunA17_Chr2g0313971 26.969 508 281 21 10 483 8 459 8.08e-20 95.9
Msa0129790 MtrunA17_Chr7g0227611 27.397 511 282 19 10 483 12 470 1.61e-19 95.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0129790 AT3G10650.1 40.541 629 285 24 2 614 4 559 6.04e-95 335
Msa0129790 AT3G10650.2 40.541 629 285 24 2 614 4 559 6.04e-95 335
Msa0129790 AT5G20200.1 28.740 508 282 26 13 483 22 486 5.04e-18 90.5

Find 362 sgRNAs with CRISPR-Local

Find 727 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGCAAACGCAGGGCAAATT+AGG 0.154393 1_3:-59866335 None:intergenic
CAACCCAGCAATTCTCTATT+TGG 0.157350 1_3:+59874872 Msa0129790:CDS
CCAAATTTGAATATACTATT+TGG 0.158893 1_3:-59873960 None:intergenic
GCCAAATCAGCTCCAGTATT+TGG 0.159671 1_3:+59873019 Msa0129790:CDS
GGCACAGGCTCTAGTTTATT+TGG 0.168016 1_3:+59874836 Msa0129790:CDS
GGCTCCAGCTCACCTCTTTC+TGG 0.182639 1_3:+59871700 Msa0129790:CDS
CCAAATAGTATATTCAAATT+TGG 0.211971 1_3:+59873960 Msa0129790:CDS
CCTTCTCCATTTCAGGCTTC+TGG 0.214633 1_3:+59875343 Msa0129790:CDS
CCTAACCCTGTCTTTGCTTT+TGG 0.214706 1_3:+59875058 Msa0129790:CDS
AAAACACCCACCGTAGAAAA+TGG 0.222586 1_3:+59870564 Msa0129790:CDS
ACAGAACCCTTCTCCATTTC+AGG 0.224310 1_3:+59875336 Msa0129790:CDS
GCACAGGCTCTAGTTTATTT+GGG 0.225365 1_3:+59874837 Msa0129790:CDS
CCTCCTGCTCCTAATTCTTC+AGG 0.247439 1_3:+59866624 Msa0129790:CDS
AACAGTTCAAATCAAAATAA+TGG 0.254853 1_3:+59874071 Msa0129790:CDS
AATAATTTGGATGGCACATT+TGG 0.263943 1_3:+59872081 Msa0129790:CDS
GGTAAGACAGATATTTCTTC+TGG 0.266025 1_3:+59874656 Msa0129790:CDS
CATAGTTCAAATCAAAATAA+TGG 0.267600 1_3:+59873984 Msa0129790:CDS
ACCAAATACTGGAGCTGATT+TGG 0.272943 1_3:-59873020 None:intergenic
ACCTCCACACAGCCTGCTTT+TGG 0.283989 1_3:+59875031 Msa0129790:CDS
ACTGATGATGATGCAGTAAA+TGG 0.291708 1_3:-59873130 None:intergenic
TCTGCATCATCCCCATTGTT+TGG 0.293412 1_3:+59874626 Msa0129790:CDS
GGTTTATCTGTATCATCTTC+TGG 0.293884 1_3:+59874347 Msa0129790:CDS
GGCTCAAAACCACTGGAAAC+TGG 0.296758 1_3:+59874368 Msa0129790:CDS
CAGTTTACAAGGAAATAATT+TGG 0.305513 1_3:+59872068 Msa0129790:CDS
AAGTGAAAACCTGAAGAATT+AGG 0.307099 1_3:-59866633 None:intergenic
CTTGGCACAATCGACATAAT+AGG 0.318751 1_3:-59871197 None:intergenic
TCATCACCTTTGTCCGGGTT+TGG 0.321223 1_3:+59874908 Msa0129790:CDS
CAGATCTGCCACGAGGTCTT+GGG 0.321908 1_3:-59871265 None:intergenic
CAACCGTTGTTGTTGCTGTT+AGG 0.323275 1_3:-59866507 None:intergenic
TTCAATTCCGGTACAACATT+TGG 0.329522 1_3:+59874770 Msa0129790:CDS
TTTGGAGCATCCACTCATTC+AGG 0.334633 1_3:+59875208 Msa0129790:CDS
TCACAGGTTTCCACTCCTTC+AGG 0.336019 1_3:+59875271 Msa0129790:CDS
GAACCAAAAGTTGTTATTGT+AGG 0.338830 1_3:-59872881 None:intergenic
GACTTGATTGCTTGACTTTG+TGG 0.340249 1_3:-59872226 None:intergenic
GCACCTACAATAACAACTTT+TGG 0.344412 1_3:+59872878 Msa0129790:CDS
TGCAGCTTTACTACTGTTGC+TGG 0.345071 1_3:+59873804 Msa0129790:intron
ATTGCGGACAAAGTTTCTTC+TGG 0.345155 1_3:+59872710 Msa0129790:CDS
CCAAAAGCAAAGACAGGGTT+AGG 0.346106 1_3:-59875058 None:intergenic
ACTACTGTTGCTGGTTCAAC+TGG 0.346357 1_3:+59873813 Msa0129790:CDS
GCAGATCTGCCACGAGGTCT+TGG 0.347787 1_3:-59871266 None:intergenic
CTCATCTGATCATTATTAAC+TGG 0.351705 1_3:-59875088 None:intergenic
AGCCAGTCTCAGAGTTATTT+CGG 0.355955 1_3:+59874515 Msa0129790:CDS
ATTTCAGGCTTCTGGCAGTC+TGG 0.356218 1_3:+59875351 Msa0129790:CDS
GGTGGCGGGCTTGCTGTTCA+TGG 0.357741 1_3:+59871428 Msa0129790:CDS
TGTTCTGTTGACTTGCAAAC+TGG 0.358081 1_3:-59875243 None:intergenic
TTGGCACAATCGACATAATA+GGG 0.359317 1_3:-59871196 None:intergenic
AATACAAAATTTGATTGAAC+CGG 0.366460 1_3:-59875187 None:intergenic
TCAAAAGAAGCACCAAATTT+CGG 0.367481 1_3:-59873169 None:intergenic
ATGGATCATGCCATGTTTAC+CGG 0.372661 1_3:+59871479 Msa0129790:CDS
GCTGCCAGTGGTTCTCTGTT+TGG 0.373016 1_3:+59874539 Msa0129790:CDS
AACCGTTGTTGTTGCTGTTA+GGG 0.374742 1_3:-59866506 None:intergenic
ATCAGCTCCAGTATTTGGTT+TGG 0.375588 1_3:+59873024 Msa0129790:CDS
AAGAGGTGAGCTGGAGCCTT+TGG 0.380963 1_3:-59871695 None:intergenic
TCCAGAGAATTCTTTAATAG+AGG 0.381786 1_3:-59872617 None:intergenic
CTGCATCATCCCCATTGTTT+GGG 0.382516 1_3:+59874627 Msa0129790:CDS
GACTGTAGATGCAGCTGTTA+GGG 0.382610 1_3:+59870470 Msa0129790:CDS
AATAATGGGTCCCTTGCTTC+AGG 0.384444 1_3:+59874086 Msa0129790:CDS
TGCAAACGCAGGGCAAATTA+GGG 0.389445 1_3:-59866334 None:intergenic
GGACTGTAGATGCAGCTGTT+AGG 0.389508 1_3:+59870469 Msa0129790:CDS
TCCTTTCCTGTCACATCAGC+AGG 0.390669 1_3:+59874326 Msa0129790:CDS
GGTGAGTCTACTCCGAAATT+TGG 0.393110 1_3:+59873157 Msa0129790:CDS
GACAAGCCTGCTTTACCAAA+TGG 0.398992 1_3:+59872905 Msa0129790:CDS
TACAATAGGAACCGATTCAT+TGG 0.400103 1_3:-59872190 None:intergenic
GGAACCAAATAGAGAATTGC+TGG 0.400476 1_3:-59874876 None:intergenic
GGATTAGCAGTTGACCCATT+TGG 0.402733 1_3:-59872920 None:intergenic
CAGATCTGCAATTTATAGTA+TGG 0.405026 1_3:+59871280 Msa0129790:CDS
GTTGGATAAATTCTGGTATA+CGG 0.406709 1_3:-59871311 None:intergenic
TTAGCAATGGATAATAATAT+AGG 0.410557 1_3:+59871622 Msa0129790:CDS
ACAGTTCAAATCAAAATAAT+GGG 0.411948 1_3:+59874072 Msa0129790:CDS
TTTAGTTCATCACCTTTGTC+CGG 0.413750 1_3:+59874902 Msa0129790:CDS
TTAACTTTATCTAGCAGAAC+AGG 0.416107 1_3:-59871796 None:intergenic
GCCTGTCCACGTAGCATTGA+AGG 0.417676 1_3:-59872003 None:intergenic
GAAGAAGCAACAAGTTTCAA+TGG 0.417783 1_3:-59872168 None:intergenic
AATCAAAATAATGGGTCTCT+TGG 0.417923 1_3:+59873993 Msa0129790:CDS
AATAATGGGTCTCTTGGTTC+AGG 0.418508 1_3:+59873999 Msa0129790:CDS
ATACCTCGTGTGCACTCATA+TGG 0.418721 1_3:-59872314 None:intergenic
ATAGTTCAAATCAAAATAAT+GGG 0.419081 1_3:+59873985 Msa0129790:CDS
AGAAGAGGTTGGATAAATTC+TGG 0.421178 1_3:-59871318 None:intergenic
ACCTTCTCCAAACCAAATAC+TGG 0.421364 1_3:-59873031 None:intergenic
TCAACAGAACATTGCTTCAC+AGG 0.421946 1_3:+59875255 Msa0129790:CDS
TGTTCTGTTGACTAGCAAAC+TGG 0.425438 1_3:-59875306 None:intergenic
TCACATACACTGGAAGTAAC+AGG 0.425521 1_3:-59870615 None:intergenic
ATTAAAGAATTCTCTGGACT+TGG 0.426306 1_3:+59872622 Msa0129790:CDS
GGTGAAGCAACATCCTCAAT+AGG 0.426725 1_3:-59871044 None:intergenic
GGTAGATGCGTCAAAATTGC+CGG 0.431208 1_3:+59872044 Msa0129790:CDS
AATATTACCTTCTGGACAAA+AGG 0.436119 1_3:+59870530 Msa0129790:CDS
TGTTGCTTCTTCCAATGAAT+CGG 0.436206 1_3:+59872179 Msa0129790:CDS
TCCCCATTGTTTGGGTCGAC+TGG 0.438863 1_3:+59874635 Msa0129790:CDS
TTCTGCGGAAGGGACGTTTA+CGG 0.440112 1_3:-59866440 None:intergenic
AGGAGCTGAGGCACTGGTCG+TGG 0.440446 1_3:-59874978 None:intergenic
GAAAGGAACCGAATTTGAAA+AGG 0.440849 1_3:-59874310 None:intergenic
CTCTAATTCTACAGGGTGGC+GGG 0.442360 1_3:+59871414 Msa0129790:intron
GTCAATTTCACATAGAGATA+AGG 0.443437 1_3:+59872134 Msa0129790:CDS
GATGAGTATGGTGGACAGTA+TGG 0.443452 1_3:+59875105 Msa0129790:CDS
TCAGAACCAATATTACCTTC+TGG 0.443789 1_3:+59870522 Msa0129790:CDS
AATTGTTCTGACTCGGATCA+AGG 0.444719 1_3:+59869758 Msa0129790:CDS
ATCTGTCTATAGGAACGGAT+TGG 0.444900 1_3:+59871732 Msa0129790:CDS
TACCAGTCGACCCAAACAAT+GGG 0.445027 1_3:-59874637 None:intergenic
TCCCAAGCTTCTCCTTCTGC+CGG 0.445602 1_3:+59874563 Msa0129790:CDS
GGCTCTTCGAAGCTTGGAAA+TGG 0.446069 1_3:+59872023 Msa0129790:CDS
TCAATTTCACATAGAGATAA+GGG 0.446895 1_3:+59872135 Msa0129790:CDS
GCAGTGCTCTATCTGTCTAT+AGG 0.452392 1_3:+59871722 Msa0129790:CDS
TAATAATGATCAGATGAGTA+TGG 0.453027 1_3:+59875093 Msa0129790:CDS
CACACTGCAATTCATGAAAA+CGG 0.454188 1_3:+59871233 Msa0129790:CDS
TTATACCCCTTGTGTAGATC+CGG 0.458136 1_3:-59871498 None:intergenic
AAATTTGATTGAACCGGGGC+AGG 0.459067 1_3:-59875181 None:intergenic
TTAGGGTTTCTGAGTGCTGC+CGG 0.459791 1_3:-59866489 None:intergenic
TGGACAGGCTCTTCGAAGCT+TGG 0.459853 1_3:+59872017 Msa0129790:CDS
GAATTTAATGCAGGAGGAGG+AGG 0.460153 1_3:+59875373 Msa0129790:CDS
TTATTTCCTTGTAAACTGTC+CGG 0.461528 1_3:-59872063 None:intergenic
CAGGTTGCAAAAGAATCTTC+TGG 0.461777 1_3:+59869695 Msa0129790:intron
TCCTCTATTAAAGAATTCTC+TGG 0.462215 1_3:+59872616 Msa0129790:CDS
CACCACTGGGGTGGAGGAAG+AGG 0.462376 1_3:-59874264 None:intergenic
GTAAGACAGATATTTCTTCT+GGG 0.463753 1_3:+59874657 Msa0129790:CDS
CCACCGGTTCCACCTTCGTA+TGG 0.464894 1_3:-59866411 None:intergenic
TGGCATGATCCATTGCAGAC+TGG 0.465724 1_3:-59871469 None:intergenic
GGCAGTTCTTCTGCTGCAGT+TGG 0.466285 1_3:+59874437 Msa0129790:CDS
AGAGCTTGCAAAAGCTTACA+TGG 0.468352 1_3:+59871070 Msa0129790:CDS
CGATGCCCTAACAGAAAATC+CGG 0.469902 1_3:-59873892 None:intergenic
AACCACTGGAAACTGGGAAC+AGG 0.470991 1_3:+59874375 Msa0129790:CDS
GGAGGCAAACATGGGTGAAC+TGG 0.472058 1_3:-59874957 None:intergenic
ACCTTCAATGCTACGTGGAC+AGG 0.473159 1_3:+59872002 Msa0129790:CDS
AACAATCATGATCTGAGGTT+GGG 0.476466 1_3:-59872577 None:intergenic
AGACTGCCAGAAGCCTGAAA+TGG 0.477481 1_3:-59875349 None:intergenic
ACCGGAATTGAAAACGTTAG+TGG 0.478457 1_3:-59874759 None:intergenic
AGCTCTTCATCAATGACAGC+TGG 0.480057 1_3:+59874488 Msa0129790:CDS
GTTGACCCATTTGGTAAAGC+AGG 0.480336 1_3:-59872911 None:intergenic
ACTGGTCGTGGAGGCAAACA+TGG 0.480799 1_3:-59874966 None:intergenic
CTCAGCCGGGAGGATCAATC+AGG 0.481155 1_3:+59873194 Msa0129790:CDS
ACAAGCCTGCTTTACCAAAT+GGG 0.484505 1_3:+59872906 Msa0129790:CDS
CGGCACATCTGCTTCCTCTT+CGG 0.484850 1_3:+59874796 Msa0129790:CDS
CCGCCTGCGAGTCCTATGTT+TGG 0.486080 1_3:+59875151 Msa0129790:CDS
AGCAGGCTGTGTGGAGGTGG+AGG 0.487226 1_3:-59875026 None:intergenic
CTCTTCCTCCACCCCAGTGG+TGG 0.488201 1_3:+59874265 Msa0129790:CDS
AAAAGCAGGCTGTGTGGAGG+TGG 0.488832 1_3:-59875029 None:intergenic
GTCTCTGTAGTGGTTACAAT+AGG 0.489396 1_3:-59872204 None:intergenic
GGGGAGGAGGAAGACGCTTG+CGG 0.490093 1_3:-59866602 None:intergenic
CAGGTTGAGTTAATGCAAGA+TGG 0.490965 1_3:-59870596 None:intergenic
AAACACCCACCGTAGAAAAT+GGG 0.491513 1_3:+59870565 Msa0129790:CDS
GACATAATAGGGGATTTATA+CGG 0.492049 1_3:-59871185 None:intergenic
AGAAGAGAAGAGGTCAGAAA+TGG 0.492331 1_3:+59870494 Msa0129790:CDS
ACCGGCAGAAGGAGAAGCTT+GGG 0.492443 1_3:-59874564 None:intergenic
AATCCATACGAAGGTGGAAC+CGG 0.494738 1_3:+59866408 Msa0129790:CDS
ATTGTGCCAAGGGCTACTAC+TGG 0.494963 1_3:+59871209 Msa0129790:CDS
GGCGATGGCGACGGAAGGGA+AGG 0.495069 1_3:+59866380 Msa0129790:exon
GGACCACCAGCCTCCTTTGA+AGG 0.495501 1_3:-59873058 None:intergenic
TGACTTCTGATTCTGAGCAC+TGG 0.498162 1_3:-59872115 None:intergenic
GGGAGTTTCTCGTTAGGCTC+AGG 0.498219 1_3:+59875394 Msa0129790:CDS
GATGAACTATCACTCACAAC+TGG 0.498808 1_3:-59871967 None:intergenic
AATGCCACCACTTGCAGAAA+GGG 0.499032 1_3:-59874171 None:intergenic
CAAAAGCTTACATGGGGAGC+AGG 0.501625 1_3:+59871078 Msa0129790:CDS
CACAGGCTCTAGTTTATTTG+GGG 0.503170 1_3:+59874838 Msa0129790:CDS
TCAGGTGGTGGTGATAAGTC+TGG 0.504936 1_3:+59875412 Msa0129790:CDS
GCTCAAAACCACTGGAAACT+GGG 0.505159 1_3:+59874369 Msa0129790:CDS
GAAGACGAAGTTGCCACCAC+TGG 0.505229 1_3:-59874278 None:intergenic
AATTTGAATATACTATTTGG+TGG 0.505964 1_3:-59873957 None:intergenic
GGCATGATCCATTGCAGACT+GGG 0.507556 1_3:-59871468 None:intergenic
ATTTGATATGAGAGATGGAA+AGG 0.508806 1_3:-59874039 None:intergenic
TCCAGTATTTGGTTTGGAGA+AGG 0.510622 1_3:+59873030 Msa0129790:CDS
GGTGGAAGCAACAGTAGTAC+TGG 0.510811 1_3:-59874936 None:intergenic
AAATTGCCGGACAGTTTACA+AGG 0.511006 1_3:+59872057 Msa0129790:CDS
TCTCTAATTCTACAGGGTGG+CGG 0.513539 1_3:+59871413 Msa0129790:intron
ATCTTCTGGCTCAAAACCAC+TGG 0.517539 1_3:+59874361 Msa0129790:CDS
TTATCCAACCTCTTCTCTCA+AGG 0.518809 1_3:+59871325 Msa0129790:CDS
AACAGGCAAGATGCAGGAAT+CGG 0.519078 1_3:+59874392 Msa0129790:CDS
TGTTGACTTGCAAACTGGAA+AGG 0.519749 1_3:-59875238 None:intergenic
GATAATAATATAGGATCTGT+TGG 0.520088 1_3:+59871631 Msa0129790:CDS
TCTGTGGTATTGCCATCCAC+AGG 0.520215 1_3:+59872770 Msa0129790:CDS
TGACTTTGTGGTCTCTGTAG+TGG 0.520401 1_3:-59872214 None:intergenic
TCTGTCTATAGGAACGGATT+GGG 0.521019 1_3:+59871733 Msa0129790:CDS
GGCAGTCTGGAATTTAATGC+AGG 0.521137 1_3:+59875364 Msa0129790:CDS
TTCTCGTTAGGCTCAGGTGG+TGG 0.522921 1_3:+59875400 Msa0129790:CDS
GATAGAGCACTGCCAGAAAG+AGG 0.523765 1_3:-59871712 None:intergenic
GCTGAACCAAAAGCAAAGAC+AGG 0.524662 1_3:-59875064 None:intergenic
AGTTGCCACCACTGGGGTGG+AGG 0.525704 1_3:-59874270 None:intergenic
GTCTTCAACCCAGTCTGCAA+TGG 0.525839 1_3:+59871460 Msa0129790:CDS
CACCGGCAGAAGGAGAAGCT+TGG 0.526121 1_3:-59874565 None:intergenic
GAACAATCATGATCTGAGGT+TGG 0.526959 1_3:-59872578 None:intergenic
AGCTCGTCCCTTTCTGCAAG+TGG 0.528280 1_3:+59874164 Msa0129790:CDS
TTACTTGATGCAGCAAGCGC+AGG 0.528307 1_3:-59874233 None:intergenic
TTACAAGGAAATAATTTGGA+TGG 0.528392 1_3:+59872072 Msa0129790:CDS
ACTGCCAGAAAGAGGTGAGC+TGG 0.528469 1_3:-59871704 None:intergenic
AGAGAGAGAAATGCAAACGC+AGG 0.530148 1_3:-59866345 None:intergenic
GGCAATCAACAAAGAGCAGT+TGG 0.530558 1_3:+59869716 Msa0129790:CDS
GTGTGCCCAGTAGTAGCCCT+TGG 0.530592 1_3:-59871215 None:intergenic
TCAAATTAATTGTTCTGACT+CGG 0.532747 1_3:+59869751 Msa0129790:CDS
GAATCTGATAGTGGTGATGC+TGG 0.533520 1_3:+59873855 Msa0129790:CDS
TTTGTGGCAGAACTTAAAGA+AGG 0.536600 1_3:-59874692 None:intergenic
AAGTTATTTGATATGAGAGA+TGG 0.536734 1_3:-59874044 None:intergenic
AACTTCTGTTGCTTCATCAA+AGG 0.537317 1_3:+59872991 Msa0129790:CDS
AATGCCACTTCTGCTTCCAC+TGG 0.537743 1_3:+59874194 Msa0129790:CDS
GAACGGCGATGGCGACGGAA+GGG 0.538472 1_3:+59866376 Msa0129790:exon
GGAGGAGGGAGTTTCTCGTT+AGG 0.539319 1_3:+59875388 Msa0129790:CDS
TTAGTTCATCACCTTTGTCC+GGG 0.539929 1_3:+59874903 Msa0129790:CDS
TAATGCCACCACTTGCAGAA+AGG 0.540251 1_3:-59874172 None:intergenic
GGAGAAGGTTGATCCTTCAA+AGG 0.540808 1_3:+59873045 Msa0129790:CDS
TATTATGTCGATTGTGCCAA+GGG 0.540886 1_3:+59871199 Msa0129790:CDS
GATAAACCTGCTGATGTGAC+AGG 0.541608 1_3:-59874332 None:intergenic
GTCGTTTGAGTTCTGCGGAA+GGG 0.541660 1_3:-59866450 None:intergenic
CCAGAAGCCTGAAATGGAGA+AGG 0.542747 1_3:-59875343 None:intergenic
ACGTTAGTGGTAGAACTTGA+AGG 0.544064 1_3:-59874746 None:intergenic
GGAAAGGAAGAAGAAAATGA+AGG 0.544776 1_3:-59874023 None:intergenic
GCCGAGTCCAAATGTTGTAC+CGG 0.545351 1_3:-59874777 None:intergenic
GGGTTAGGGCTTCCAAAAGC+AGG 0.545572 1_3:-59875043 None:intergenic
AAAGGAACCGAATTTGAAAA+GGG 0.546039 1_3:-59874309 None:intergenic
AAGACGAAGTTGCCACCACT+GGG 0.547031 1_3:-59874277 None:intergenic
TGAAGAATTAGGAGCAGGAG+GGG 0.547301 1_3:-59866622 None:intergenic
ACTGGGAACAGGCAAGATGC+AGG 0.547845 1_3:+59874386 Msa0129790:CDS
CGAACGGCGATGGCGACGGA+AGG 0.548425 1_3:+59866375 Msa0129790:exon
TTAAAGAATTCTCTGGACTT+GGG 0.548568 1_3:+59872623 Msa0129790:CDS
TAGCATTGATGAGGATACAT+TGG 0.548947 1_3:-59871105 None:intergenic
AAACTGAGGAGCTGAGGCAC+TGG 0.549311 1_3:-59874984 None:intergenic
TCAAGAAGAAGCTGTAGAGA+TGG 0.549972 1_3:+59868566 Msa0129790:CDS
CTATTATGTCGATTGTGCCA+AGG 0.550091 1_3:+59871198 Msa0129790:CDS
AGAATGAAGGGCCTGAAGCA+AGG 0.551999 1_3:-59874097 None:intergenic
GATGGAACAAGAAATGAGAC+AGG 0.553317 1_3:+59868584 Msa0129790:CDS
ATTGTTCTGACTCGGATCAA+GGG 0.555820 1_3:+59869759 Msa0129790:CDS
CTGATGATGATGCAGTAAAT+GGG 0.556158 1_3:-59873129 None:intergenic
CAAAGGTGATGAACTAAATG+AGG 0.556255 1_3:-59874897 None:intergenic
GTTTGGTCAACAACCTGCCC+CGG 0.557893 1_3:+59875168 Msa0129790:CDS
GGCAAACATGGGTGAACTGG+TGG 0.558292 1_3:-59874954 None:intergenic
ATGCAGATGATTGAACTGAC+TGG 0.558405 1_3:-59874610 None:intergenic
ATGTCCATAGGTTCCTATTG+AGG 0.560616 1_3:+59871031 Msa0129790:intron
AATTCCAGTGGAAGCAGAAG+TGG 0.561345 1_3:-59874198 None:intergenic
CTGTGGTATTGCCATCCACA+GGG 0.564030 1_3:+59872771 Msa0129790:CDS
CGTGCGATATCCTGCTCGTA+GGG 0.564190 1_3:+59871130 Msa0129790:CDS
AGGCTTATGCAAGGAAGATG+AGG 0.564196 1_3:-59871776 None:intergenic
GGAACGGAAGAAGAGAATGA+AGG 0.564570 1_3:-59874110 None:intergenic
TCTCTCTGAACGAACGGCGA+TGG 0.566207 1_3:+59866365 Msa0129790:exon
AAAGTTTGTGAATCTGATAG+TGG 0.567452 1_3:+59873846 Msa0129790:CDS
AAGTTATTTGATACAAGAGA+TGG 0.567482 1_3:-59874131 None:intergenic
CACCGAAATAACTCTGAGAC+TGG 0.567532 1_3:-59874517 None:intergenic
TTGTGTAGATCCGGTAAACA+TGG 0.567997 1_3:-59871489 None:intergenic
AGTTATTTCGGTGCTGCCAG+TGG 0.568361 1_3:+59874527 Msa0129790:CDS
TGCCTGTTCCCAGTTTCCAG+TGG 0.568878 1_3:-59874377 None:intergenic
GTCAACTCTAGTAGTGGCAC+AGG 0.569586 1_3:+59874821 Msa0129790:CDS
GTTGATCCTTCAAAGGAGGC+TGG 0.570834 1_3:+59873052 Msa0129790:CDS
TGAACGAACGGCGATGGCGA+CGG 0.572954 1_3:+59866371 Msa0129790:exon
GACGCCGTACGATCGTCCTC+CGG 0.573553 1_3:+59866470 Msa0129790:CDS
AGTACTGGACGTTCCAAACC+CGG 0.574845 1_3:-59874921 None:intergenic
ACGTTTACGGAACTTGCCAC+CGG 0.576729 1_3:-59866427 None:intergenic
ATACAAAATTTGATTGAACC+GGG 0.578119 1_3:-59875186 None:intergenic
CTAACAGCAACAACAACGGT+TGG 0.578586 1_3:+59866508 Msa0129790:CDS
AAGACGCTTGCGGAGGAGAG+AGG 0.578871 1_3:-59866592 None:intergenic
TTGTGCCAAGGGCTACTACT+GGG 0.579474 1_3:+59871210 Msa0129790:CDS
GTTGTGTCTTCCCTACGAGC+AGG 0.579803 1_3:-59871140 None:intergenic
TTGTTCTGACTCGGATCAAG+GGG 0.579850 1_3:+59869760 Msa0129790:CDS
ACTTGCAAACTGGAAAGGAC+TGG 0.580401 1_3:-59875233 None:intergenic
CTGGAATTTAATGCAGGAGG+AGG 0.581117 1_3:+59875370 Msa0129790:CDS
GAATGAAGGGCCTGAAGCAA+GGG 0.581593 1_3:-59874096 None:intergenic
GGAACCAAACAGAGAACCAC+TGG 0.582317 1_3:-59874543 None:intergenic
AAACCTGAAGAATTAGGAGC+AGG 0.586098 1_3:-59866627 None:intergenic
GCTCATGTTAAGACAACTGA+TGG 0.586123 1_3:+59872812 Msa0129790:CDS
TTTACTGCATCATCATCAGT+TGG 0.586151 1_3:+59873133 Msa0129790:CDS
GAGGAGGAAGACGCTTGCGG+AGG 0.586731 1_3:-59866599 None:intergenic
GATGATGCAGTAAATGGGAT+TGG 0.586743 1_3:-59873124 None:intergenic
AATTTAATGCAGGAGGAGGA+GGG 0.587411 1_3:+59875374 Msa0129790:CDS
CGTCGTTTGAGTTCTGCGGA+AGG 0.588479 1_3:-59866451 None:intergenic
GCTGCCGGAGGACGATCGTA+CGG 0.589716 1_3:-59866474 None:intergenic
CATGTTAAGACAACTGATGG+TGG 0.589721 1_3:+59872815 Msa0129790:CDS
TGGAAAGGACTGGTTCCTGA+AGG 0.589778 1_3:-59875286 None:intergenic
AATGTATCCTCATCAATGCT+AGG 0.589876 1_3:+59871107 Msa0129790:CDS
GCTCTATCTGTCTATAGGAA+CGG 0.590357 1_3:+59871727 Msa0129790:CDS
ATTTGATACAAGAGATGGAA+CGG 0.591195 1_3:-59874126 None:intergenic
AGCTGAGGCACTGGTCGTGG+AGG 0.591561 1_3:-59874975 None:intergenic
GAAAGGAAGAAGAAAATGAA+GGG 0.591845 1_3:-59874022 None:intergenic
CGAAGTTGCCACCACTGGGG+TGG 0.592898 1_3:-59874273 None:intergenic
TCCGGTACAACATTTGGACT+CGG 0.596719 1_3:+59874776 Msa0129790:CDS
TGACAGCACTTATGCAGTCA+AGG 0.597061 1_3:+59870448 Msa0129790:CDS
CTGAAGAATTAGGAGCAGGA+GGG 0.598428 1_3:-59866623 None:intergenic
ACTAGAGTTGACTGCCGAAG+AGG 0.598696 1_3:-59874810 None:intergenic
GAAGAATTAGGAGCAGGAGG+GGG 0.599724 1_3:-59866621 None:intergenic
CCTGAAGAATTAGGAGCAGG+AGG 0.600621 1_3:-59866624 None:intergenic
CTCCTCAAAATCCAGTGAGA+TGG 0.601522 1_3:+59871876 Msa0129790:CDS
TGAGGGACTTTCATGTGCAA+TGG 0.601828 1_3:-59872741 None:intergenic
TGCAGATGATTGAACTGACT+GGG 0.603948 1_3:-59874609 None:intergenic
TCTAATCTTCTATATTCCAA+AGG 0.604820 1_3:+59871679 Msa0129790:CDS
AGGACTGGTTCCTGAAGGAG+TGG 0.605017 1_3:-59875281 None:intergenic
GATGCAGTAAATGGGATTGG+TGG 0.605209 1_3:-59873121 None:intergenic
AACTTTGTCCGCAATAACAA+TGG 0.606109 1_3:-59872702 None:intergenic
CAAAAGCAAAGACAGGGTTA+GGG 0.607195 1_3:-59875057 None:intergenic
AATCTGATAGTGGTGATGCT+GGG 0.607337 1_3:+59873856 Msa0129790:CDS
GAACGGAAGAAGAGAATGAA+GGG 0.607896 1_3:-59874109 None:intergenic
CAATACCACAGATGATGTTG+AGG 0.608435 1_3:-59872759 None:intergenic
GCTCACAGACTCATCACTCA+TGG 0.609065 1_3:+59866552 Msa0129790:CDS
AGATCTGCCACGAGGTCTTG+GGG 0.610274 1_3:-59871264 None:intergenic
GTTGTAAATACACCGGCAGA+AGG 0.611788 1_3:-59874575 None:intergenic
GAGAGAGAAATGCAAACGCA+GGG 0.612349 1_3:-59866344 None:intergenic
GTTGGAACAAGAAATGAGAC+AGG 0.613639 1_3:+59868536 Msa0129790:CDS
CAGAAGCCTGAAATGGAGAA+GGG 0.613804 1_3:-59875342 None:intergenic
ACTAACCTGATTGATCCTCC+CGG 0.615018 1_3:-59873199 None:intergenic
TTGGTGTCAAAGTTTACTGA+TGG 0.615022 1_3:-59873079 None:intergenic
TTCCTCTTCCTCCACCCCAG+TGG 0.615422 1_3:+59874262 Msa0129790:CDS
TCTATCGTAAACCCTGTGGA+TGG 0.616103 1_3:-59872782 None:intergenic
AATACCACAGATGATGTTGA+GGG 0.616813 1_3:-59872758 None:intergenic
AAAGCGTAGAAATTTAGCAA+TGG 0.617508 1_3:+59871609 Msa0129790:CDS
AGGACTGGTTCCTGAATGAG+TGG 0.618361 1_3:-59875218 None:intergenic
GAATGAAAACTGAGGAGCTG+AGG 0.618481 1_3:-59874990 None:intergenic
TGAAATGGAGAAGGGTTCTG+TGG 0.619865 1_3:-59875334 None:intergenic
GACGTTCCAAACCCGGACAA+AGG 0.621900 1_3:-59874914 None:intergenic
TGACCAAACATAGGACTCGC+AGG 0.622086 1_3:-59875154 None:intergenic
CAAACCTTGAGAGAAGAGGT+TGG 0.622312 1_3:-59871329 None:intergenic
CCATACGAAGGTGGAACCGG+TGG 0.622513 1_3:+59866411 Msa0129790:CDS
GAGCTTGCAAAAGCTTACAT+GGG 0.622577 1_3:+59871071 Msa0129790:CDS
GCGTGCGATATCCTGCTCGT+AGG 0.623393 1_3:+59871129 Msa0129790:CDS
AGTTTCTCGTTAGGCTCAGG+TGG 0.623733 1_3:+59875397 Msa0129790:CDS
GAGAAGAATCCATACGAAGG+TGG 0.623855 1_3:+59866402 Msa0129790:CDS
ACTGCATCATCATCAGTTGG+TGG 0.625035 1_3:+59873136 Msa0129790:CDS
ACTGTAGATGCAGCTGTTAG+GGG 0.625703 1_3:+59870471 Msa0129790:CDS
AGTTGTCATGCTAATTCCAG+TGG 0.625982 1_3:-59874210 None:intergenic
AAGAGAACAATCATGATCTG+AGG 0.626147 1_3:-59872582 None:intergenic
GCAGGTTGTTGACCAAACAT+AGG 0.627604 1_3:-59875163 None:intergenic
TCGGCAGTCAACTCTAGTAG+TGG 0.628156 1_3:+59874815 Msa0129790:CDS
CTGTTAGGGGAGAAGAGAAG+AGG 0.630340 1_3:+59870484 Msa0129790:CDS
TCGTCCCTTTCTGCAAGTGG+TGG 0.630857 1_3:+59874167 Msa0129790:CDS
ACGGCGTCGTTTGAGTTCTG+CGG 0.630861 1_3:-59866455 None:intergenic
ACTAGCAAACTGGAAAGGAC+TGG 0.630992 1_3:-59875296 None:intergenic
ATGTTTACCGGATCTACACA+AGG 0.632334 1_3:+59871491 Msa0129790:CDS
TACAAAATTTGATTGAACCG+GGG 0.632886 1_3:-59875185 None:intergenic
GATCCTTCAAAGGAGGCTGG+TGG 0.633729 1_3:+59873055 Msa0129790:CDS
ACCTGCTGATGTGACAGGAA+AGG 0.635569 1_3:-59874327 None:intergenic
TTACCAGTCGACCCAAACAA+TGG 0.636268 1_3:-59874638 None:intergenic
TGTTGACTAGCAAACTGGAA+AGG 0.636542 1_3:-59875301 None:intergenic
CTGGTCGTGGAGGCAAACAT+GGG 0.638466 1_3:-59874965 None:intergenic
TCCAAAAGCAGGCTGTGTGG+AGG 0.638902 1_3:-59875032 None:intergenic
TAGCAGAACAGGCTTATGCA+AGG 0.642482 1_3:-59871785 None:intergenic
GGCTTATGCAAGGAAGATGA+GGG 0.642655 1_3:-59871775 None:intergenic
GAACCAAATAGAGAATTGCT+GGG 0.645460 1_3:-59874875 None:intergenic
CTGAACCAAAAGCAAAGACA+GGG 0.645570 1_3:-59875063 None:intergenic
AAGGCAAACCTTGAGAGAAG+AGG 0.648577 1_3:-59871333 None:intergenic
TAATGATCAGATGAGTATGG+TGG 0.652388 1_3:+59875096 Msa0129790:CDS
GAAGGTTGATCCTTCAAAGG+AGG 0.653111 1_3:+59873048 Msa0129790:CDS
TGGCACAATCGACATAATAG+GGG 0.653229 1_3:-59871195 None:intergenic
AGTAGAAGTTGTAAATACAC+CGG 0.654574 1_3:-59874582 None:intergenic
AGTCTGGAATTTAATGCAGG+AGG 0.655425 1_3:+59875367 Msa0129790:CDS
ATTCCATATGAGTGCACACG+AGG 0.656885 1_3:+59872311 Msa0129790:CDS
AAGTCCGAAGAAAACGTGAG+TGG 0.656892 1_3:+59871823 Msa0129790:CDS
GCTTCCAAAAGCAGGCTGTG+TGG 0.657764 1_3:-59875035 None:intergenic
AGCATCTATCGTAAACCCTG+TGG 0.658598 1_3:-59872786 None:intergenic
GGGTTTCTGAGTGCTGCCGG+AGG 0.659550 1_3:-59866486 None:intergenic
TGAGTGATGAGTCTGTGAGC+GGG 0.660621 1_3:-59866549 None:intergenic
AAGTCCCTCAACATCATCTG+TGG 0.664811 1_3:+59872754 Msa0129790:CDS
AATGGAGAAGGGTTCTGTGG+AGG 0.665595 1_3:-59875331 None:intergenic
AGCTTGCAAAAGCTTACATG+GGG 0.668348 1_3:+59871072 Msa0129790:CDS
TATGGTGGACAGTATGGCTG+AGG 0.670674 1_3:+59875111 Msa0129790:CDS
TTTGTGACCCCAAGACCTCG+TGG 0.674587 1_3:+59871257 Msa0129790:CDS
TCGCACGCCTAGCATTGATG+AGG 0.686079 1_3:-59871114 None:intergenic
AGCTAATGTTAAGACATCTG+TGG 0.686639 1_3:+59872838 Msa0129790:CDS
AACCCTAACAGCAACAACAA+CGG 0.687562 1_3:+59866504 Msa0129790:CDS
GCAGACTGGGTTGAAGACGA+AGG 0.692797 1_3:-59871455 None:intergenic
GTTTACCGGATCTACACAAG+GGG 0.693772 1_3:+59871493 Msa0129790:CDS
ATGAGTGATGAGTCTGTGAG+CGG 0.701940 1_3:-59866550 None:intergenic
ACCAGTCGACCCAAACAATG+GGG 0.714983 1_3:-59874636 None:intergenic
AAGGAGAAGAATCCATACGA+AGG 0.716663 1_3:+59866399 Msa0129790:CDS
TGAAGCATAAGACTTTCACA+AGG 0.721544 1_3:+59869807 Msa0129790:CDS
TGTTCTGACTCGGATCAAGG+GGG 0.729066 1_3:+59869761 Msa0129790:CDS
TGTTTACCGGATCTACACAA+GGG 0.733340 1_3:+59871492 Msa0129790:CDS
TTATCACCTTCAATGCTACG+TGG 0.741114 1_3:+59871997 Msa0129790:CDS
GCTGAAGTGAATGAAAACTG+AGG 0.742651 1_3:-59874998 None:intergenic
TAAATTGCAGATCTGCCACG+AGG 0.764822 1_3:-59871272 None:intergenic
CCAAACATAGGACTCGCAGG+CGG 0.769585 1_3:-59875151 None:intergenic
AGACGAAGTTGCCACCACTG+GGG 0.787620 1_3:-59874276 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAATTATTTATTAACTATG+AGG + chr1_3:59866857-59866876 Msa0129790:intron 10.0%
!!! ATAATTTTATAGTAAAATGT+TGG + chr1_3:59869950-59869969 Msa0129790:intron 10.0%
!!! GAAATTTTGTATTATGAATT+AGG + chr1_3:59866743-59866762 Msa0129790:intron 15.0%
!! AATAAGCAGTAAAAATAAAA+TGG - chr1_3:59866839-59866858 None:intergenic 15.0%
!! TTCGTTGTTATATTAATTTA+CGG - chr1_3:59867453-59867472 None:intergenic 15.0%
!! ACAAAATGTAAATGAAATTA+GGG + chr1_3:59868037-59868056 Msa0129790:intron 15.0%
!!! TATCTTGAAAGATTATTTTT+TGG + chr1_3:59868668-59868687 Msa0129790:intron 15.0%
!!! ATCTTGAAAGATTATTTTTT+GGG + chr1_3:59868669-59868688 Msa0129790:intron 15.0%
!!! TATAAGTAAAAGCATAAATT+TGG - chr1_3:59868833-59868852 None:intergenic 15.0%
!!! AAATCAATCTTTATTTCTAT+TGG + chr1_3:59869567-59869586 Msa0129790:intron 15.0%
!! CTATATTATATATTGAGTAT+TGG + chr1_3:59869593-59869612 Msa0129790:intron 15.0%
!! TATTCAAGCATAAAATATTA+AGG - chr1_3:59870646-59870665 None:intergenic 15.0%
!! ATGATAATAACTAAGAAATA+TGG - chr1_3:59870778-59870797 None:intergenic 15.0%
!! ATATTTCTTAGTTATTATCA+TGG + chr1_3:59870777-59870796 Msa0129790:intron 15.0%
!! AGAATCAAACAAATAAATTA+GGG - chr1_3:59870948-59870967 None:intergenic 15.0%
!! TAGAATCAAACAAATAAATT+AGG - chr1_3:59870949-59870968 None:intergenic 15.0%
!! ATTATGATACAAAATAATTC+AGG - chr1_3:59871361-59871380 None:intergenic 15.0%
!!! AAATTCTTTTATGATGAAAT+CGG + chr1_3:59872260-59872279 Msa0129790:CDS 15.0%
!! AAATCAAAGTAAAAAACAAA+TGG - chr1_3:59873315-59873334 None:intergenic 15.0%
!!! TTTTTTACTTTGATTTAGTT+TGG + chr1_3:59873319-59873338 Msa0129790:intron 15.0%
!!! TTTTTACTTTGATTTAGTTT+GGG + chr1_3:59873320-59873339 Msa0129790:intron 15.0%
!! ATAGTTCAAATCAAAATAAT+GGG + chr1_3:59873985-59874004 Msa0129790:CDS 15.0%
!! AATTGAATTCAAACAAAAGA+GGG - chr1_3:59866666-59866685 None:intergenic 20.0%
!! AAGTTTATTAATGAGTGTTT+CGG + chr1_3:59867016-59867035 Msa0129790:intron 20.0%
!! TTATAAAATCATAGAGATGA+GGG - chr1_3:59867126-59867145 None:intergenic 20.0%
!! GTTCAAATAGAGAAATATAT+AGG - chr1_3:59867156-59867175 None:intergenic 20.0%
!! TCCACAAAATTACAATAATA+GGG - chr1_3:59867313-59867332 None:intergenic 20.0%
!!! TCTATTTTATTAGTCGTTTT+AGG - chr1_3:59867398-59867417 None:intergenic 20.0%
!! GACAAAATGTAAATGAAATT+AGG + chr1_3:59868036-59868055 Msa0129790:intron 20.0%
!!! TCTTTGTTGAATTTTTTCAA+CGG + chr1_3:59868102-59868121 Msa0129790:intron 20.0%
!! ACAAAAAATGACATTTAAAG+TGG - chr1_3:59868430-59868449 None:intergenic 20.0%
!! GCATGATAATAAAGAAATTA+TGG - chr1_3:59868484-59868503 None:intergenic 20.0%
!!! TCTTGAAAGATTATTTTTTG+GGG + chr1_3:59868670-59868689 Msa0129790:intron 20.0%
!!! TTTTTATATTTCATCATGTC+TGG + chr1_3:59868740-59868759 Msa0129790:intron 20.0%
!!! CTGATATTATCTTAAGTTTT+GGG - chr1_3:59869041-59869060 None:intergenic 20.0%
!!! TCTGATATTATCTTAAGTTT+TGG - chr1_3:59869042-59869061 None:intergenic 20.0%
!! TGAATAATGTTTATAAGTGA+TGG + chr1_3:59869165-59869184 Msa0129790:intron 20.0%
!! GAATAATGTTTATAAGTGAT+GGG + chr1_3:59869166-59869185 Msa0129790:intron 20.0%
!! AGAAGAATTAAGCTAAAAAA+TGG - chr1_3:59869416-59869435 None:intergenic 20.0%
!! AAACTAACAAAAGACATTTA+AGG - chr1_3:59869501-59869520 None:intergenic 20.0%
!! TTGTAACTAAAATGTGTAAT+GGG - chr1_3:59870710-59870729 None:intergenic 20.0%
!!! GTTTATTTTCCTATGTAATT+GGG + chr1_3:59870799-59870818 Msa0129790:intron 20.0%
!! AGACTTTGAATTATGAATAT+TGG - chr1_3:59870895-59870914 None:intergenic 20.0%
!!! ATTTGTTTGATTCTATTTTG+TGG + chr1_3:59870954-59870973 Msa0129790:intron 20.0%
!! ATACAAAATAATTCAGGAAA+AGG - chr1_3:59871355-59871374 None:intergenic 20.0%
!! TTAGCAATGGATAATAATAT+AGG + chr1_3:59871622-59871641 Msa0129790:CDS 20.0%
!! TAAATGATATTTACTAACCA+TGG + chr1_3:59872437-59872456 Msa0129790:intron 20.0%
!! AAATGATATTTACTAACCAT+GGG + chr1_3:59872438-59872457 Msa0129790:intron 20.0%
!! CATAATTATTTAGGAGTAAA+TGG - chr1_3:59872477-59872496 None:intergenic 20.0%
!! CAGTTTCTTAGATATTTATT+TGG + chr1_3:59872519-59872538 Msa0129790:intron 20.0%
!! TTTCTTAGATATTTATTTGG+TGG + chr1_3:59872522-59872541 Msa0129790:intron 20.0%
!!! TTTTATTTTCCTTGATAGTA+TGG + chr1_3:59872554-59872573 Msa0129790:intron 20.0%
!! CTAGAAAAATTAAACAAAGA+AGG - chr1_3:59872944-59872963 None:intergenic 20.0%
!!! TTTTACTTTGATTTAGTTTG+GGG + chr1_3:59873321-59873340 Msa0129790:intron 20.0%
!!! AAAGTTTTGTTGTTACTTTT+GGG + chr1_3:59873426-59873445 Msa0129790:intron 20.0%
!! AATTTGAATATACTATTTGG+TGG - chr1_3:59873960-59873979 None:intergenic 20.0%
!! CCAAATTTGAATATACTATT+TGG - chr1_3:59873963-59873982 None:intergenic 20.0%
!! CCAAATAGTATATTCAAATT+TGG + chr1_3:59873960-59873979 Msa0129790:CDS 20.0%
!!! CATTATTTTGATTTGAACTA+TGG - chr1_3:59873986-59874005 None:intergenic 20.0%
!! CATAGTTCAAATCAAAATAA+TGG + chr1_3:59873984-59874003 Msa0129790:CDS 20.0%
!! AACAGTTCAAATCAAAATAA+TGG + chr1_3:59874071-59874090 Msa0129790:CDS 20.0%
!! ACAGTTCAAATCAAAATAAT+GGG + chr1_3:59874072-59874091 Msa0129790:CDS 20.0%
!! AATACAAAATTTGATTGAAC+CGG - chr1_3:59875190-59875209 None:intergenic 20.0%
!!! GTTCAATCAAATTTTGTATT+TGG + chr1_3:59875190-59875209 Msa0129790:CDS 20.0%
! CAATTGAATTCAAACAAAAG+AGG - chr1_3:59866667-59866686 None:intergenic 25.0%
!!! TGTATTTTTTTGTTGCTGTT+AGG + chr1_3:59866771-59866790 Msa0129790:intron 25.0%
!!! GTATTTTTTTGTTGCTGTTA+GGG + chr1_3:59866772-59866791 Msa0129790:intron 25.0%
! AGTTTATTAATGAGTGTTTC+GGG + chr1_3:59867017-59867036 Msa0129790:intron 25.0%
! TTTGATTGTTATCATCATCA+CGG + chr1_3:59867057-59867076 Msa0129790:intron 25.0%
! TATAAAATCATAGAGATGAG+GGG - chr1_3:59867125-59867144 None:intergenic 25.0%
! GTTATAAAATCATAGAGATG+AGG - chr1_3:59867127-59867146 None:intergenic 25.0%
!!! TAAACAACTATTTTGATCCT+CGG + chr1_3:59867224-59867243 Msa0129790:intron 25.0%
! AATTACAATAATAGGGTCAT+TGG - chr1_3:59867306-59867325 None:intergenic 25.0%
!! ACCCTATTATTGTAATTTTG+TGG + chr1_3:59867309-59867328 Msa0129790:intron 25.0%
! GTCCACAAAATTACAATAAT+AGG - chr1_3:59867314-59867333 None:intergenic 25.0%
! TCTTTCAATTTCTTGCTTTA+GGG + chr1_3:59867610-59867629 Msa0129790:intron 25.0%
!!! GATCTTTTCAAGCTATTATA+GGG - chr1_3:59867688-59867707 None:intergenic 25.0%
!!! TGATCTTTTCAAGCTATTAT+AGG - chr1_3:59867689-59867708 None:intergenic 25.0%
! AAAGATCATAAATGTTCATG+AGG + chr1_3:59867701-59867720 Msa0129790:intron 25.0%
!!! GTTTAGTTTGATGGATATTT+TGG + chr1_3:59867782-59867801 Msa0129790:intron 25.0%
! AGAACATGACATTATTGAAT+GGG - chr1_3:59867895-59867914 None:intergenic 25.0%
! TAGAACATGACATTATTGAA+TGG - chr1_3:59867896-59867915 None:intergenic 25.0%
!!! CTTTGTTGAATTTTTTCAAC+GGG + chr1_3:59868103-59868122 Msa0129790:intron 25.0%
!! ACATTTAAAGTGGTGAAAAT+TGG - chr1_3:59868420-59868439 None:intergenic 25.0%
! AATCTTTCAAGATATGCAAA+TGG - chr1_3:59868662-59868681 None:intergenic 25.0%
! AACTAAACATAAACACAGAT+AGG - chr1_3:59868874-59868893 None:intergenic 25.0%
!! TGGTTGGAATTGATAATTTA+AGG + chr1_3:59868895-59868914 Msa0129790:intron 25.0%
!! GGTTGGAATTGATAATTTAA+GGG + chr1_3:59868896-59868915 Msa0129790:intron 25.0%
! ATATTAACAAGCATTCTACA+TGG - chr1_3:59869374-59869393 None:intergenic 25.0%
!! TGTAGAATGCTTGTTAATAT+TGG + chr1_3:59869374-59869393 Msa0129790:intron 25.0%
! TTTAATTGCATGTTTCATGA+TGG + chr1_3:59869528-59869547 Msa0129790:intron 25.0%
! TTAATTGCATGTTTCATGAT+GGG + chr1_3:59869529-59869548 Msa0129790:intron 25.0%
! GTGAGATATCAATAATAACA+CGG - chr1_3:59869649-59869668 None:intergenic 25.0%
! TCAAATTAATTGTTCTGACT+CGG + chr1_3:59869751-59869770 Msa0129790:CDS 25.0%
!! GGATTAGGAATAATTGTTTT+TGG + chr1_3:59869847-59869866 Msa0129790:intron 25.0%
! AAAAAAATCATAATCAAGCC+AGG - chr1_3:59870001-59870020 None:intergenic 25.0%
! TAAGAACGATTTCAAAAACT+AGG - chr1_3:59870110-59870129 None:intergenic 25.0%
! AAGAACGATTTCAAAAGATA+TGG - chr1_3:59870223-59870242 None:intergenic 25.0%
! AGAATGGAATGAAATTGATA+TGG - chr1_3:59870337-59870356 None:intergenic 25.0%
! CATAAATCAAAGACTAAGAA+TGG - chr1_3:59870353-59870372 None:intergenic 25.0%
!! CATTCTTAGTCTTTGATTTA+TGG + chr1_3:59870351-59870370 Msa0129790:intron 25.0%
!! GTTGATTGTGTATATGTTTT+TGG + chr1_3:59870396-59870415 Msa0129790:intron 25.0%
! CTTGTAACTAAAATGTGTAA+TGG - chr1_3:59870711-59870730 None:intergenic 25.0%
!!! CATTACACATTTTAGTTACA+AGG + chr1_3:59870709-59870728 Msa0129790:intron 25.0%
!!! GGTTTATTTTCCTATGTAAT+TGG + chr1_3:59870798-59870817 Msa0129790:intron 25.0%
!!! TGAATATTGGTTGATAAGAT+TGG - chr1_3:59870882-59870901 None:intergenic 25.0%
! GTATCATAATGTTCATGTAT+TGG + chr1_3:59871371-59871390 Msa0129790:intron 25.0%
! GATAATAATATAGGATCTGT+TGG + chr1_3:59871631-59871650 Msa0129790:CDS 25.0%
!! ATAGAAGATTAGACTTTTGA+CGG - chr1_3:59871672-59871691 None:intergenic 25.0%
! TCTAATCTTCTATATTCCAA+AGG + chr1_3:59871679-59871698 Msa0129790:CDS 25.0%
! CAGTTTACAAGGAAATAATT+TGG + chr1_3:59872068-59872087 Msa0129790:CDS 25.0%
! TTACAAGGAAATAATTTGGA+TGG + chr1_3:59872072-59872091 Msa0129790:CDS 25.0%
! TCAATTTCACATAGAGATAA+GGG + chr1_3:59872135-59872154 Msa0129790:CDS 25.0%
! ATTATTTAGGAGTAAATGGA+AGG - chr1_3:59872473-59872492 None:intergenic 25.0%
! TGCTTCACTCATAATTATTT+AGG - chr1_3:59872486-59872505 None:intergenic 25.0%
!!! GAAAGTTTTGTTGTTACTTT+TGG + chr1_3:59873425-59873444 Msa0129790:intron 25.0%
!!! AAGTTTTGTTGTTACTTTTG+GGG + chr1_3:59873427-59873446 Msa0129790:intron 25.0%
! ATGTAGCTAAACATATGAAA+TGG - chr1_3:59873491-59873510 None:intergenic 25.0%
! AAGTTATTTGATATGAGAGA+TGG - chr1_3:59874047-59874066 None:intergenic 25.0%
! AAGTTATTTGATACAAGAGA+TGG - chr1_3:59874134-59874153 None:intergenic 25.0%
! AGAAGAAAAAGATGTATTTG+TGG - chr1_3:59874711-59874730 None:intergenic 25.0%
!! ACAAATACATCTTTTTCTTC+TGG + chr1_3:59874710-59874729 Msa0129790:CDS 25.0%
!! CAAATACATCTTTTTCTTCT+GGG + chr1_3:59874711-59874730 Msa0129790:CDS 25.0%
! TAATAATGATCAGATGAGTA+TGG + chr1_3:59875093-59875112 Msa0129790:CDS 25.0%
! ATACAAAATTTGATTGAACC+GGG - chr1_3:59875189-59875208 None:intergenic 25.0%
AAGTGAAAACCTGAAGAATT+AGG - chr1_3:59866636-59866655 None:intergenic 30.0%
TTGAAAGTAATTGCATGTGT+CGG + chr1_3:59866948-59866967 Msa0129790:intron 30.0%
ATAAAATCATAGAGATGAGG+GGG - chr1_3:59867124-59867143 None:intergenic 30.0%
ATCTAGAAACAAAAGAGAGT+TGG - chr1_3:59867201-59867220 None:intergenic 30.0%
AATATCGAAGAGTTAAACAC+CGG - chr1_3:59867585-59867604 None:intergenic 30.0%
GTCTTTCAATTTCTTGCTTT+AGG + chr1_3:59867609-59867628 Msa0129790:intron 30.0%
TATCCATCAAACTAAACCTA+AGG - chr1_3:59867779-59867798 None:intergenic 30.0%
! TTGTTGCTGACAAAATTTTG+AGG - chr1_3:59867973-59867992 None:intergenic 30.0%
! TTGTTTTCTAAGCTGATAGT+AGG + chr1_3:59868014-59868033 Msa0129790:intron 30.0%
TGTAAATGAAATTAGGGAAG+TGG + chr1_3:59868043-59868062 Msa0129790:intron 30.0%
GTAAATGAAATTAGGGAAGT+GGG + chr1_3:59868044-59868063 Msa0129790:intron 30.0%
TAAATGAAATTAGGGAAGTG+GGG + chr1_3:59868045-59868064 Msa0129790:intron 30.0%
TTCAACAAAGAAACGTTTGA+AGG - chr1_3:59868093-59868112 None:intergenic 30.0%
!!! AATTTTTTCAACGGGTTTTG+TGG + chr1_3:59868111-59868130 Msa0129790:intron 30.0%
!! TAAGTTACTTGCTGTAAACA+AGG - chr1_3:59868372-59868391 None:intergenic 30.0%
GTTTACAGCAAGTAACTTAT+TGG + chr1_3:59868373-59868392 Msa0129790:intron 30.0%
!! TATTGGCTGTAACTTTTCTA+TGG + chr1_3:59868390-59868409 Msa0129790:intron 30.0%
! ATATGTGGTTTTTATGATGC+AGG + chr1_3:59868513-59868532 Msa0129790:intron 30.0%
! TATGTGGTTTTTATGATGCA+GGG + chr1_3:59868514-59868533 Msa0129790:intron 30.0%
ATTAAGCTGTAAAGAAACTG+AGG - chr1_3:59868770-59868789 None:intergenic 30.0%
GCAAAATTTACTACAGTGTA+TGG + chr1_3:59868795-59868814 Msa0129790:intron 30.0%
TCTGTGTTTATGTTTAGTTG+TGG + chr1_3:59868875-59868894 Msa0129790:intron 30.0%
TGTTTATGTTTAGTTGTGGT+TGG + chr1_3:59868879-59868898 Msa0129790:intron 30.0%
TCGACTCAATTACACAAAAT+CGG - chr1_3:59869012-59869031 None:intergenic 30.0%
TCAATGCAATCTTAGAAACT+GGG - chr1_3:59869240-59869259 None:intergenic 30.0%
! ATTGCAGAATTGGCTTAATT+TGG + chr1_3:59869317-59869336 Msa0129790:intron 30.0%
!!! TCTACTTTTATTTTTCCCGT+AGG + chr1_3:59869435-59869454 Msa0129790:intron 30.0%
! AACTTTTACATCCACAATGT+AGG - chr1_3:59869477-59869496 None:intergenic 30.0%
AACAATTATTCCTAATCCAC+AGG - chr1_3:59869845-59869864 None:intergenic 30.0%
! TATTGCGATGATTCTGATTT+TGG + chr1_3:59870068-59870087 Msa0129790:intron 30.0%
CAAAAACTAGGAGACTAAAA+TGG - chr1_3:59870098-59870117 None:intergenic 30.0%
TTTCAAAAGATATGGACATC+AGG - chr1_3:59870215-59870234 None:intergenic 30.0%
ATGAAATTGATATGGACATC+AGG - chr1_3:59870329-59870348 None:intergenic 30.0%
! TTGATTTATGGTGTACCTTT+TGG + chr1_3:59870363-59870382 Msa0129790:intron 30.0%
! TGATTTATGGTGTACCTTTT+GGG + chr1_3:59870364-59870383 Msa0129790:intron 30.0%
! TTTTGTCCAGAAGGTAATAT+TGG - chr1_3:59870531-59870550 None:intergenic 30.0%
AATATTACCTTCTGGACAAA+AGG + chr1_3:59870530-59870549 Msa0129790:CDS 30.0%
!!! GGAGATTTTTCACTTTTTAG+AGG - chr1_3:59871167-59871186 None:intergenic 30.0%
GACATAATAGGGGATTTATA+CGG - chr1_3:59871188-59871207 None:intergenic 30.0%
CAGATCTGCAATTTATAGTA+TGG + chr1_3:59871280-59871299 Msa0129790:CDS 30.0%
GTTGGATAAATTCTGGTATA+CGG - chr1_3:59871314-59871333 None:intergenic 30.0%
TAGAATTAGAGAGACATATC+AGG - chr1_3:59871405-59871424 None:intergenic 30.0%
ATATGTCTCTCTAATTCTAC+AGG + chr1_3:59871406-59871425 Msa0129790:intron 30.0%
TATGTCTCTCTAATTCTACA+GGG + chr1_3:59871407-59871426 Msa0129790:intron 30.0%
!!! AGGTATCTTATTAGCTTTTG+TGG + chr1_3:59871559-59871578 Msa0129790:intron 30.0%
!!! TGTTTTCTCCTTATTTTCAC+AGG + chr1_3:59871582-59871601 Msa0129790:intron 30.0%
!!! GTTTTCTCCTTATTTTCACA+GGG + chr1_3:59871583-59871602 Msa0129790:intron 30.0%
!!! TTTTCTCCTTATTTTCACAG+GGG + chr1_3:59871584-59871603 Msa0129790:intron 30.0%
AAAGCGTAGAAATTTAGCAA+TGG + chr1_3:59871609-59871628 Msa0129790:CDS 30.0%
TTAACTTTATCTAGCAGAAC+AGG - chr1_3:59871799-59871818 None:intergenic 30.0%
! GATTCAGATGATTTTTCTCT+GGG - chr1_3:59871940-59871959 None:intergenic 30.0%
! TGATTCAGATGATTTTTCTC+TGG - chr1_3:59871941-59871960 None:intergenic 30.0%
GAGAAAAATCATCTGAATCA+AGG + chr1_3:59871941-59871960 Msa0129790:CDS 30.0%
TTATTTCCTTGTAAACTGTC+CGG - chr1_3:59872066-59872085 None:intergenic 30.0%
AATAATTTGGATGGCACATT+TGG + chr1_3:59872081-59872100 Msa0129790:CDS 30.0%
GTCAATTTCACATAGAGATA+AGG + chr1_3:59872134-59872153 Msa0129790:CDS 30.0%
TCCTCTATTAAAGAATTCTC+TGG + chr1_3:59872616-59872635 Msa0129790:CDS 30.0%
TCCAGAGAATTCTTTAATAG+AGG - chr1_3:59872620-59872639 None:intergenic 30.0%
ATTAAAGAATTCTCTGGACT+TGG + chr1_3:59872622-59872641 Msa0129790:CDS 30.0%
TTAAAGAATTCTCTGGACTT+GGG + chr1_3:59872623-59872642 Msa0129790:CDS 30.0%
! GAACCAAAAGTTGTTATTGT+AGG - chr1_3:59872884-59872903 None:intergenic 30.0%
! AACCTTGAAAACATTTTGCT+TGG - chr1_3:59873101-59873120 None:intergenic 30.0%
!! TCAAAAGAAGCACCAAATTT+CGG - chr1_3:59873172-59873191 None:intergenic 30.0%
!!! ACATCTAGACTGTGTTTTTT+TGG + chr1_3:59873273-59873292 Msa0129790:intron 30.0%
!!! CATCTAGACTGTGTTTTTTT+GGG + chr1_3:59873274-59873293 Msa0129790:intron 30.0%
TAATAACATCTCTTGTTACG+AGG + chr1_3:59873347-59873366 Msa0129790:intron 30.0%
!!! AGTTTTGTTGTTACTTTTGG+GGG + chr1_3:59873428-59873447 Msa0129790:intron 30.0%
TAGCTACATATACCTTTACT+TGG + chr1_3:59873502-59873521 Msa0129790:intron 30.0%
TGAAAGTTCAAACCAAGTAA+AGG - chr1_3:59873517-59873536 None:intergenic 30.0%
! TTTACTTGGTTTGAACTTTC+AGG + chr1_3:59873516-59873535 Msa0129790:intron 30.0%
TCTACACTATCAAAAGTTTG+AGG - chr1_3:59873638-59873657 None:intergenic 30.0%
AAAGTTTGTGAATCTGATAG+TGG + chr1_3:59873846-59873865 Msa0129790:CDS 30.0%
! AAAATACCGGATTTTCTGTT+AGG + chr1_3:59873886-59873905 Msa0129790:CDS 30.0%
! AAATACCGGATTTTCTGTTA+GGG + chr1_3:59873887-59873906 Msa0129790:CDS 30.0%
!! AATCAAAATAATGGGTCTCT+TGG + chr1_3:59873993-59874012 Msa0129790:CDS 30.0%
GAAAGGAAGAAGAAAATGAA+GGG - chr1_3:59874025-59874044 None:intergenic 30.0%
ATTTGATATGAGAGATGGAA+AGG - chr1_3:59874042-59874061 None:intergenic 30.0%
ATTTGATACAAGAGATGGAA+CGG - chr1_3:59874129-59874148 None:intergenic 30.0%
! ACAACTTCCCTTTTCAAATT+CGG + chr1_3:59874302-59874321 Msa0129790:CDS 30.0%
AAAGGAACCGAATTTGAAAA+GGG - chr1_3:59874312-59874331 None:intergenic 30.0%
AGTAGAAGTTGTAAATACAC+CGG - chr1_3:59874585-59874604 None:intergenic 30.0%
GTAAGACAGATATTTCTTCT+GGG + chr1_3:59874657-59874676 Msa0129790:CDS 30.0%
CTCATCTGATCATTATTAAC+TGG - chr1_3:59875091-59875110 None:intergenic 30.0%
TACAAAATTTGATTGAACCG+GGG - chr1_3:59875188-59875207 None:intergenic 30.0%
!! GGGCAAATTAGGGTTTTAAT+CGG - chr1_3:59866327-59866346 None:intergenic 35.0%
TGCTGTTAGGGTTTATGATT+AGG + chr1_3:59866784-59866803 Msa0129790:intron 35.0%
! TGTGTCCAAATAGTTGTTTC+CGG + chr1_3:59867563-59867582 Msa0129790:intron 35.0%
AAACACCGGAAACAACTATT+TGG - chr1_3:59867571-59867590 None:intergenic 35.0%
! AGATGTTCTGGTGTGTTTTA+AGG + chr1_3:59867725-59867744 Msa0129790:intron 35.0%
!! AAGCCTTAGGTTTAGTTTGA+TGG + chr1_3:59867773-59867792 Msa0129790:intron 35.0%
! TTTGTCAGCAACAAGACTTT+TGG + chr1_3:59867979-59867998 Msa0129790:intron 35.0%
AGTGTGTCACAATAAGCATT+TGG + chr1_3:59868176-59868195 Msa0129790:intron 35.0%
GTGTGTCACAATAAGCATTT+GGG + chr1_3:59868177-59868196 Msa0129790:intron 35.0%
ATCCACAGAAAAGATACAGA+TGG - chr1_3:59868272-59868291 None:intergenic 35.0%
! TGTATCTTTTCTGTGGATGT+AGG + chr1_3:59868274-59868293 Msa0129790:intron 35.0%
! GTATCTTTTCTGTGGATGTA+GGG + chr1_3:59868275-59868294 Msa0129790:intron 35.0%
TCATGCACTTCATTGATATG+TGG + chr1_3:59868498-59868517 Msa0129790:intron 35.0%
ATTCATATCACGATCCGATT+TGG - chr1_3:59869145-59869164 None:intergenic 35.0%
CAATCTTAGAAACTGGGTTT+GGG - chr1_3:59869234-59869253 None:intergenic 35.0%
CTCAATGCAATCTTAGAAAC+TGG - chr1_3:59869241-59869260 None:intergenic 35.0%
!! ATCTAGTAGCTTGTTCATGT+TGG + chr1_3:59869294-59869313 Msa0129790:intron 35.0%
TTCATGTTGGATTGCAGAAT+TGG + chr1_3:59869307-59869326 Msa0129790:intron 35.0%
! GGCTTAATTTGGATTGTTGA+TGG + chr1_3:59869328-59869347 Msa0129790:intron 35.0%
CTGCAATGTTACCTATTGAT+TGG + chr1_3:59869618-59869637 Msa0129790:intron 35.0%
TGAAGCATAAGACTTTCACA+AGG + chr1_3:59869807-59869826 Msa0129790:CDS 35.0%
! TGTTTTGTATCCTGTGGATT+AGG + chr1_3:59869832-59869851 Msa0129790:intron 35.0%
AGTTGTTCAAATAGCATTCC+TGG + chr1_3:59869980-59869999 Msa0129790:intron 35.0%
!!! TGTACCTTTTGGGATGTTTT+TGG + chr1_3:59870374-59870393 Msa0129790:intron 35.0%
TCAACCAAAAACATCCCAAA+AGG - chr1_3:59870381-59870400 None:intergenic 35.0%
!!! ATGTTTTTGGTCCATACAAC+AGG + chr1_3:59870409-59870428 Msa0129790:intron 35.0%
TCAGAACCAATATTACCTTC+TGG + chr1_3:59870522-59870541 Msa0129790:CDS 35.0%
! TATTCTTCCTTTTGTCCAGA+AGG - chr1_3:59870540-59870559 None:intergenic 35.0%
! GTTTTCAGTCCCATTTTCTA+CGG - chr1_3:59870577-59870596 None:intergenic 35.0%
TTTCCTATGTAATTGGGACT+TGG + chr1_3:59870805-59870824 Msa0129790:intron 35.0%
!! TAGCATTGATGAGGATACAT+TGG - chr1_3:59871108-59871127 None:intergenic 35.0%
AATGTATCCTCATCAATGCT+AGG + chr1_3:59871107-59871126 Msa0129790:CDS 35.0%
TTGGCACAATCGACATAATA+GGG - chr1_3:59871199-59871218 None:intergenic 35.0%
! TATTATGTCGATTGTGCCAA+GGG + chr1_3:59871199-59871218 Msa0129790:CDS 35.0%
CACACTGCAATTCATGAAAA+CGG + chr1_3:59871233-59871252 Msa0129790:CDS 35.0%
AGAAGAGGTTGGATAAATTC+TGG - chr1_3:59871321-59871340 None:intergenic 35.0%
TCCTGTCTTTCAGATAATAC+AGG + chr1_3:59871539-59871558 Msa0129790:intron 35.0%
ACCTGTATTATCTGAAAGAC+AGG - chr1_3:59871543-59871562 None:intergenic 35.0%
CTTTATCCCCTGTGAAAATA+AGG - chr1_3:59871593-59871612 None:intergenic 35.0%
! AATTTTTGTAGCCATCTCAC+TGG - chr1_3:59871890-59871909 None:intergenic 35.0%
GAAGAAGCAACAAGTTTCAA+TGG - chr1_3:59872171-59872190 None:intergenic 35.0%
! TGTTGCTTCTTCCAATGAAT+CGG + chr1_3:59872179-59872198 Msa0129790:CDS 35.0%
! TACAATAGGAACCGATTCAT+TGG - chr1_3:59872193-59872212 None:intergenic 35.0%
AACTTGCATGAAACTGCAAA+CGG - chr1_3:59872394-59872413 None:intergenic 35.0%
! AACAATCATGATCTGAGGTT+GGG - chr1_3:59872580-59872599 None:intergenic 35.0%
AAGAGAACAATCATGATCTG+AGG - chr1_3:59872585-59872604 None:intergenic 35.0%
!! AAAAAGCGCCATTGTTATTG+CGG + chr1_3:59872694-59872713 Msa0129790:CDS 35.0%
AACTTTGTCCGCAATAACAA+TGG - chr1_3:59872705-59872724 None:intergenic 35.0%
AATACCACAGATGATGTTGA+GGG - chr1_3:59872761-59872780 None:intergenic 35.0%
AGCTAATGTTAAGACATCTG+TGG + chr1_3:59872838-59872857 Msa0129790:CDS 35.0%
! GCACCTACAATAACAACTTT+TGG + chr1_3:59872878-59872897 Msa0129790:CDS 35.0%
! AACTTCTGTTGCTTCATCAA+AGG + chr1_3:59872991-59873010 Msa0129790:CDS 35.0%
!! TTGGTGTCAAAGTTTACTGA+TGG - chr1_3:59873082-59873101 None:intergenic 35.0%
! CACCAAGCAAAATGTTTTCA+AGG + chr1_3:59873096-59873115 Msa0129790:CDS 35.0%
! CTGATGATGATGCAGTAAAT+GGG - chr1_3:59873132-59873151 None:intergenic 35.0%
! ACTGATGATGATGCAGTAAA+TGG - chr1_3:59873133-59873152 None:intergenic 35.0%
TTTACTGCATCATCATCAGT+TGG + chr1_3:59873133-59873152 Msa0129790:CDS 35.0%
GATGTGAAGAGAATTGTGTT+CGG - chr1_3:59873258-59873277 None:intergenic 35.0%
TTAGACCCAATTCCCTTAAA+TGG + chr1_3:59873395-59873414 Msa0129790:intron 35.0%
! TACCGTCTTCAGTCTTTTAT+TGG + chr1_3:59873576-59873595 Msa0129790:intron 35.0%
! ACCGTCTTCAGTCTTTTATT+GGG + chr1_3:59873577-59873596 Msa0129790:intron 35.0%
TATGGCACATGTGAATCATA+TGG - chr1_3:59873693-59873712 None:intergenic 35.0%
! TCTGTTCAAGTTTGATCGTA+TGG - chr1_3:59873711-59873730 None:intergenic 35.0%
GGAAAGGAAGAAGAAAATGA+AGG - chr1_3:59874026-59874045 None:intergenic 35.0%
GAAAGGAACCGAATTTGAAA+AGG - chr1_3:59874313-59874332 None:intergenic 35.0%
GGTTTATCTGTATCATCTTC+TGG + chr1_3:59874347-59874366 Msa0129790:CDS 35.0%
GGTAAGACAGATATTTCTTC+TGG + chr1_3:59874656-59874675 Msa0129790:CDS 35.0%
TTTGTGGCAGAACTTAAAGA+AGG - chr1_3:59874695-59874714 None:intergenic 35.0%
! ACCACTAACGTTTTCAATTC+CGG + chr1_3:59874758-59874777 Msa0129790:CDS 35.0%
TTCAATTCCGGTACAACATT+TGG + chr1_3:59874770-59874789 Msa0129790:CDS 35.0%
GAACCAAATAGAGAATTGCT+GGG - chr1_3:59874878-59874897 None:intergenic 35.0%
CAAAGGTGATGAACTAAATG+AGG - chr1_3:59874900-59874919 None:intergenic 35.0%
! TTTAGTTCATCACCTTTGTC+CGG + chr1_3:59874902-59874921 Msa0129790:CDS 35.0%
TAATGATCAGATGAGTATGG+TGG + chr1_3:59875096-59875115 Msa0129790:CDS 35.0%
AAGGAGAAGAATCCATACGA+AGG + chr1_3:59866399-59866418 Msa0129790:CDS 40.0%
AACCCTAACAGCAACAACAA+CGG + chr1_3:59866504-59866523 Msa0129790:CDS 40.0%
! AACCGTTGTTGTTGCTGTTA+GGG - chr1_3:59866509-59866528 None:intergenic 40.0%
AAACCTGAAGAATTAGGAGC+AGG - chr1_3:59866630-59866649 None:intergenic 40.0%
TTAACTATGAGGCATGACAC+CGG + chr1_3:59866868-59866887 Msa0129790:intron 40.0%
TGAACATGTCTTCCATCAGA+AGG + chr1_3:59866981-59867000 Msa0129790:intron 40.0%
!! TTTAGCACTGATCCTTCTGA+TGG - chr1_3:59866996-59867015 None:intergenic 40.0%
TGCAAAGCTAGTATTTGAGG+GGG - chr1_3:59867178-59867197 None:intergenic 40.0%
GTGCAAAGCTAGTATTTGAG+GGG - chr1_3:59867179-59867198 None:intergenic 40.0%
GGTGCAAAGCTAGTATTTGA+GGG - chr1_3:59867180-59867199 None:intergenic 40.0%
TGGTGCAAAGCTAGTATTTG+AGG - chr1_3:59867181-59867200 None:intergenic 40.0%
!!! TATTTTGATCCTCGGATGTG+TGG + chr1_3:59867232-59867251 Msa0129790:intron 40.0%
!! ATTTTGATCCTCGGATGTGT+GGG + chr1_3:59867233-59867252 Msa0129790:intron 40.0%
TGTGTGGGACACTAATACTA+TGG + chr1_3:59867248-59867267 Msa0129790:intron 40.0%
GTGTGGGACACTAATACTAT+GGG + chr1_3:59867249-59867268 Msa0129790:intron 40.0%
GTAGATGCATCGAAAACTCT+TGG + chr1_3:59867648-59867667 Msa0129790:intron 40.0%
TGTTCATGAGGTAGATGTTC+TGG + chr1_3:59867713-59867732 Msa0129790:intron 40.0%
! AGGCTTTTTGTTGAGACTCT+AGG - chr1_3:59867759-59867778 None:intergenic 40.0%
GAGTCTCAACAAAAAGCCTT+AGG + chr1_3:59867760-59867779 Msa0129790:intron 40.0%
!!! GGATATTTTGGCATTTCAGC+TGG + chr1_3:59867794-59867813 Msa0129790:intron 40.0%
TGTCATGTTCTATATGCTCC+TGG + chr1_3:59867904-59867923 Msa0129790:intron 40.0%
!! TACTTTAGAACTTCCAGTCC+AGG - chr1_3:59867925-59867944 None:intergenic 40.0%
!! TTTTTCAACGGGTTTTGTGG+TGG + chr1_3:59868114-59868133 Msa0129790:intron 40.0%
AATAAGCATTTGGGTGTCCT+GGG + chr1_3:59868186-59868205 Msa0129790:intron 40.0%
! TGCCATCTGTATCTTTTCTG+TGG + chr1_3:59868267-59868286 Msa0129790:intron 40.0%
! TGGTTTTTATGATGCAGGGT+TGG + chr1_3:59868518-59868537 Msa0129790:intron 40.0%
GTTGGAACAAGAAATGAGAC+AGG + chr1_3:59868536-59868555 Msa0129790:CDS 40.0%
TCAAGAAGAAGCTGTAGAGA+TGG + chr1_3:59868566-59868585 Msa0129790:CDS 40.0%
GATGGAACAAGAAATGAGAC+AGG + chr1_3:59868584-59868603 Msa0129790:CDS 40.0%
TGGCTTAAGTAGTACGCATA+TGG + chr1_3:59868961-59868980 Msa0129790:intron 40.0%
TAAGTAGTACGCATATGGCT+TGG + chr1_3:59868966-59868985 Msa0129790:intron 40.0%
AGAGTCTATTCTAGATCCGT+TGG + chr1_3:59869059-59869078 Msa0129790:intron 40.0%
GAGTCTATTCTAGATCCGTT+GGG + chr1_3:59869060-59869079 Msa0129790:intron 40.0%
GTGTGGTAAGAGTTCCAAAT+CGG + chr1_3:59869128-59869147 Msa0129790:intron 40.0%
!! AAAGCTGGCTTGTAAGGTAA+GGG - chr1_3:59869195-59869214 None:intergenic 40.0%
GCAATCTTAGAAACTGGGTT+TGG - chr1_3:59869235-59869254 None:intergenic 40.0%
TGAACAAGCTACTAGATCGT+GGG - chr1_3:59869291-59869310 None:intergenic 40.0%
ATGAACAAGCTACTAGATCG+TGG - chr1_3:59869292-59869311 None:intergenic 40.0%
ACACGGTTTCACCAATCAAT+AGG - chr1_3:59869632-59869651 None:intergenic 40.0%
TCATTTCCCATACGAGAAAC+AGG + chr1_3:59869676-59869695 Msa0129790:intron 40.0%
! TTGCAACCTGTTTCTCGTAT+GGG - chr1_3:59869685-59869704 None:intergenic 40.0%
! TTTGCAACCTGTTTCTCGTA+TGG - chr1_3:59869686-59869705 None:intergenic 40.0%
CAGGTTGCAAAAGAATCTTC+TGG + chr1_3:59869695-59869714 Msa0129790:intron 40.0%
!! AATTGTTCTGACTCGGATCA+AGG + chr1_3:59869758-59869777 Msa0129790:CDS 40.0%
!! ATTGTTCTGACTCGGATCAA+GGG + chr1_3:59869759-59869778 Msa0129790:CDS 40.0%
! AAGGCATGTTTTGTATCCTG+TGG + chr1_3:59869826-59869845 Msa0129790:intron 40.0%
AAGATATGGACATCAGGAAG+AGG - chr1_3:59870209-59870228 None:intergenic 40.0%
TTGATATGGACATCAGGAAG+AGG - chr1_3:59870323-59870342 None:intergenic 40.0%
TCAATCTCAGACCTGTTGTA+TGG - chr1_3:59870423-59870442 None:intergenic 40.0%
AGAAGAGAAGAGGTCAGAAA+TGG + chr1_3:59870494-59870513 Msa0129790:CDS 40.0%
! TTTTCTACGGTGGGTGTTTT+GGG - chr1_3:59870564-59870583 None:intergenic 40.0%
! ATTTTCTACGGTGGGTGTTT+TGG - chr1_3:59870565-59870584 None:intergenic 40.0%
AAAACACCCACCGTAGAAAA+TGG + chr1_3:59870564-59870583 Msa0129790:CDS 40.0%
AAACACCCACCGTAGAAAAT+GGG + chr1_3:59870565-59870584 Msa0129790:CDS 40.0%
! CAGGTTGAGTTAATGCAAGA+TGG - chr1_3:59870599-59870618 None:intergenic 40.0%
TCACATACACTGGAAGTAAC+AGG - chr1_3:59870618-59870637 None:intergenic 40.0%
TAAGGCAAGTTCACATACAC+TGG - chr1_3:59870628-59870647 None:intergenic 40.0%
ACTCCAAGTCCCAATTACAT+AGG - chr1_3:59870811-59870830 None:intergenic 40.0%
ATGTCCATAGGTTCCTATTG+AGG + chr1_3:59871031-59871050 Msa0129790:intron 40.0%
ACATCCTCAATAGGAACCTA+TGG - chr1_3:59871038-59871057 None:intergenic 40.0%
! TAAGCTTTTGCAAGCTCTAC+AGG - chr1_3:59871068-59871087 None:intergenic 40.0%
AGAGCTTGCAAAAGCTTACA+TGG + chr1_3:59871070-59871089 Msa0129790:CDS 40.0%
GAGCTTGCAAAAGCTTACAT+GGG + chr1_3:59871071-59871090 Msa0129790:CDS 40.0%
AGCTTGCAAAAGCTTACATG+GGG + chr1_3:59871072-59871091 Msa0129790:CDS 40.0%
TGGCACAATCGACATAATAG+GGG - chr1_3:59871198-59871217 None:intergenic 40.0%
CTTGGCACAATCGACATAAT+AGG - chr1_3:59871200-59871219 None:intergenic 40.0%
! CTATTATGTCGATTGTGCCA+AGG + chr1_3:59871198-59871217 Msa0129790:CDS 40.0%
TTATCCAACCTCTTCTCTCA+AGG + chr1_3:59871325-59871344 Msa0129790:CDS 40.0%
ATGGATCATGCCATGTTTAC+CGG + chr1_3:59871479-59871498 Msa0129790:CDS 40.0%
TTGTGTAGATCCGGTAAACA+TGG - chr1_3:59871492-59871511 None:intergenic 40.0%
ATGTTTACCGGATCTACACA+AGG + chr1_3:59871491-59871510 Msa0129790:CDS 40.0%
TGTTTACCGGATCTACACAA+GGG + chr1_3:59871492-59871511 Msa0129790:CDS 40.0%
TTATACCCCTTGTGTAGATC+CGG - chr1_3:59871501-59871520 None:intergenic 40.0%
!!! GATTAGACTTTTGACGGACT+CGG - chr1_3:59871666-59871685 None:intergenic 40.0%
GCTCTATCTGTCTATAGGAA+CGG + chr1_3:59871727-59871746 Msa0129790:CDS 40.0%
ATCTGTCTATAGGAACGGAT+TGG + chr1_3:59871732-59871751 Msa0129790:CDS 40.0%
! TCTGTCTATAGGAACGGATT+GGG + chr1_3:59871733-59871752 Msa0129790:CDS 40.0%
! AGTTCCACTCACGTTTTCTT+CGG - chr1_3:59871830-59871849 None:intergenic 40.0%
GATGAACTATCACTCACAAC+TGG - chr1_3:59871970-59871989 None:intergenic 40.0%
TTATCACCTTCAATGCTACG+TGG + chr1_3:59871997-59872016 Msa0129790:CDS 40.0%
AAATTGCCGGACAGTTTACA+AGG + chr1_3:59872057-59872076 Msa0129790:CDS 40.0%
GTCTCTGTAGTGGTTACAAT+AGG - chr1_3:59872207-59872226 None:intergenic 40.0%
GACTTGATTGCTTGACTTTG+TGG - chr1_3:59872229-59872248 None:intergenic 40.0%
! ATGCTCGCTTCTTTTGTGTA+GGG - chr1_3:59872293-59872312 None:intergenic 40.0%
! AATGCTCGCTTCTTTTGTGT+AGG - chr1_3:59872294-59872313 None:intergenic 40.0%
! GAACAATCATGATCTGAGGT+TGG - chr1_3:59872581-59872600 None:intergenic 40.0%
TTCCGCAGAAGAAAAAGAGA+CGG - chr1_3:59872666-59872685 None:intergenic 40.0%
ATTGCGGACAAAGTTTCTTC+TGG + chr1_3:59872710-59872729 Msa0129790:CDS 40.0%
CAATACCACAGATGATGTTG+AGG - chr1_3:59872762-59872781 None:intergenic 40.0%
GCTCATGTTAAGACAACTGA+TGG + chr1_3:59872812-59872831 Msa0129790:CDS 40.0%
CATGTTAAGACAACTGATGG+TGG + chr1_3:59872815-59872834 Msa0129790:CDS 40.0%
ACAAGCCTGCTTTACCAAAT+GGG + chr1_3:59872906-59872925 Msa0129790:CDS 40.0%
ACCAAATACTGGAGCTGATT+TGG - chr1_3:59873023-59873042 None:intergenic 40.0%
ATCAGCTCCAGTATTTGGTT+TGG + chr1_3:59873024-59873043 Msa0129790:CDS 40.0%
!! TCCAGTATTTGGTTTGGAGA+AGG + chr1_3:59873030-59873049 Msa0129790:CDS 40.0%
ACCTTCTCCAAACCAAATAC+TGG - chr1_3:59873034-59873053 None:intergenic 40.0%
GATGATGCAGTAAATGGGAT+TGG - chr1_3:59873127-59873146 None:intergenic 40.0%
CGCAACCATTTAAGGGAATT+GGG - chr1_3:59873403-59873422 None:intergenic 40.0%
CCAATTCCCTTAAATGGTTG+CGG + chr1_3:59873401-59873420 Msa0129790:intron 40.0%
CAATTCCCTTAAATGGTTGC+GGG + chr1_3:59873402-59873421 Msa0129790:intron 40.0%
AATTCCCTTAAATGGTTGCG+GGG + chr1_3:59873403-59873422 Msa0129790:intron 40.0%
CCCCAATAAAAGACTGAAGA+CGG - chr1_3:59873581-59873600 None:intergenic 40.0%
! CCGTCTTCAGTCTTTTATTG+GGG + chr1_3:59873578-59873597 Msa0129790:intron 40.0%
!! AATCTGATAGTGGTGATGCT+GGG + chr1_3:59873856-59873875 Msa0129790:CDS 40.0%
GCTGGGACTGATAAAAATAC+CGG + chr1_3:59873873-59873892 Msa0129790:CDS 40.0%
!! AATAATGGGTCTCTTGGTTC+AGG + chr1_3:59873999-59874018 Msa0129790:CDS 40.0%
GAACGGAAGAAGAGAATGAA+GGG - chr1_3:59874112-59874131 None:intergenic 40.0%
AGTTGTCATGCTAATTCCAG+TGG - chr1_3:59874213-59874232 None:intergenic 40.0%
!! AGTTTTAGCAGCACTGCATT+TGG + chr1_3:59874416-59874435 Msa0129790:CDS 40.0%
TGAAGAGCTGAACCCAAAAA+TGG - chr1_3:59874477-59874496 None:intergenic 40.0%
AGCCAGTCTCAGAGTTATTT+CGG + chr1_3:59874515-59874534 Msa0129790:CDS 40.0%
TGCAGATGATTGAACTGACT+GGG - chr1_3:59874612-59874631 None:intergenic 40.0%
ATGCAGATGATTGAACTGAC+TGG - chr1_3:59874613-59874632 None:intergenic 40.0%
ACGTTAGTGGTAGAACTTGA+AGG - chr1_3:59874749-59874768 None:intergenic 40.0%
ACCGGAATTGAAAACGTTAG+TGG - chr1_3:59874762-59874781 None:intergenic 40.0%
! GCACAGGCTCTAGTTTATTT+GGG + chr1_3:59874837-59874856 Msa0129790:CDS 40.0%
! CACAGGCTCTAGTTTATTTG+GGG + chr1_3:59874838-59874857 Msa0129790:CDS 40.0%
CAACCCAGCAATTCTCTATT+TGG + chr1_3:59874872-59874891 Msa0129790:CDS 40.0%
GGAACCAAATAGAGAATTGC+TGG - chr1_3:59874879-59874898 None:intergenic 40.0%
TTAGTTCATCACCTTTGTCC+GGG + chr1_3:59874903-59874922 Msa0129790:CDS 40.0%
GCTGAAGTGAATGAAAACTG+AGG - chr1_3:59875001-59875020 None:intergenic 40.0%
CAAAAGCAAAGACAGGGTTA+GGG - chr1_3:59875060-59875079 None:intergenic 40.0%
CTGAACCAAAAGCAAAGACA+GGG - chr1_3:59875066-59875085 None:intergenic 40.0%
!! TGTTGACTTGCAAACTGGAA+AGG - chr1_3:59875241-59875260 None:intergenic 40.0%
!! TGTTCTGTTGACTTGCAAAC+TGG - chr1_3:59875246-59875265 None:intergenic 40.0%
TCAACAGAACATTGCTTCAC+AGG + chr1_3:59875255-59875274 Msa0129790:CDS 40.0%
! TGTTGACTAGCAAACTGGAA+AGG - chr1_3:59875304-59875323 None:intergenic 40.0%
! TGTTCTGTTGACTAGCAAAC+TGG - chr1_3:59875309-59875328 None:intergenic 40.0%
! AGTCTGGAATTTAATGCAGG+AGG + chr1_3:59875367-59875386 Msa0129790:CDS 40.0%
AATTTAATGCAGGAGGAGGA+GGG + chr1_3:59875374-59875393 Msa0129790:CDS 40.0%
TGCAAACGCAGGGCAAATTA+GGG - chr1_3:59866337-59866356 None:intergenic 45.0%
ATGCAAACGCAGGGCAAATT+AGG - chr1_3:59866338-59866357 None:intergenic 45.0%
GAGAGAGAAATGCAAACGCA+GGG - chr1_3:59866347-59866366 None:intergenic 45.0%
AGAGAGAGAAATGCAAACGC+AGG - chr1_3:59866348-59866367 None:intergenic 45.0%
TCTCTCTCTCTCTGAACGAA+CGG + chr1_3:59866359-59866378 Msa0129790:five_prime_UTR 45.0%
GAGAAGAATCCATACGAAGG+TGG + chr1_3:59866402-59866421 Msa0129790:CDS 45.0%
AATCCATACGAAGGTGGAAC+CGG + chr1_3:59866408-59866427 Msa0129790:CDS 45.0%
! CAACCGTTGTTGTTGCTGTT+AGG - chr1_3:59866510-59866529 None:intergenic 45.0%
CTAACAGCAACAACAACGGT+TGG + chr1_3:59866508-59866527 Msa0129790:CDS 45.0%
ATGAGTGATGAGTCTGTGAG+CGG - chr1_3:59866553-59866572 None:intergenic 45.0%
TGAAGAATTAGGAGCAGGAG+GGG - chr1_3:59866625-59866644 None:intergenic 45.0%
CTGAAGAATTAGGAGCAGGA+GGG - chr1_3:59866626-59866645 None:intergenic 45.0%
GATCTCGATGTATCAGTGTC+CGG - chr1_3:59866890-59866909 None:intergenic 45.0%
GGACACTGATACATCGAGAT+CGG + chr1_3:59866889-59866908 Msa0129790:intron 45.0%
! GTAATTGCATGTGTCGGTGT+CGG + chr1_3:59866954-59866973 Msa0129790:intron 45.0%
! TAATTGCATGTGTCGGTGTC+GGG + chr1_3:59866955-59866974 Msa0129790:intron 45.0%
GAGTGTTTCGGGAATGCTTA+AGG + chr1_3:59867028-59867047 Msa0129790:intron 45.0%
TGTTTCGGGAATGCTTAAGG+TGG + chr1_3:59867031-59867050 Msa0129790:intron 45.0%
TGTTATCATCATCACGGCCA+TGG + chr1_3:59867063-59867082 Msa0129790:intron 45.0%
GTTATCATCATCACGGCCAT+GGG + chr1_3:59867064-59867083 Msa0129790:intron 45.0%
!! TTTGAAAGTGCCGTGATCAG+TGG - chr1_3:59867530-59867549 None:intergenic 45.0%
GATGCATCGAAAACTCTTGG+TGG + chr1_3:59867651-59867670 Msa0129790:intron 45.0%
CATTTCAGCTGGTACTCACA+GGG + chr1_3:59867805-59867824 Msa0129790:intron 45.0%
ATTTCAGCTGGTACTCACAG+GGG + chr1_3:59867806-59867825 Msa0129790:intron 45.0%
TGTTCTATATGCTCCTGGAC+TGG + chr1_3:59867909-59867928 Msa0129790:intron 45.0%
CAATAAGCATTTGGGTGTCC+TGG + chr1_3:59868185-59868204 Msa0129790:intron 45.0%
ATAAGCATTTGGGTGTCCTG+GGG + chr1_3:59868187-59868206 Msa0129790:intron 45.0%
! TCCCATATCGACTGAAGATG+TGG + chr1_3:59868941-59868960 Msa0129790:intron 45.0%
GCCACATCTTCAGTCGATAT+GGG - chr1_3:59868945-59868964 None:intergenic 45.0%
AGCCACATCTTCAGTCGATA+TGG - chr1_3:59868946-59868965 None:intergenic 45.0%
TTTGTACTCCTGAGCGTGAA+GGG + chr1_3:59869104-59869123 Msa0129790:intron 45.0%
!! CAAAGCTGGCTTGTAAGGTA+AGG - chr1_3:59869196-59869215 None:intergenic 45.0%
CTAACTCATCCTCACAAAGC+TGG - chr1_3:59869210-59869229 None:intergenic 45.0%
! AGATTCGACCTGTGGGTTAT+AGG + chr1_3:59869265-59869284 Msa0129790:intron 45.0%
!!! TTTTCCCGTAGGTGTTGTTG+TGG + chr1_3:59869446-59869465 Msa0129790:intron 45.0%
!! TTTCCCGTAGGTGTTGTTGT+GGG + chr1_3:59869447-59869466 Msa0129790:intron 45.0%
TTACCCCACAACAACACCTA+CGG - chr1_3:59869454-59869473 None:intergenic 45.0%
TTGTGGGGTAACCTACATTG+TGG + chr1_3:59869463-59869482 Msa0129790:intron 45.0%
GGCAATCAACAAAGAGCAGT+TGG + chr1_3:59869716-59869735 Msa0129790:CDS 45.0%
!! TTGTTCTGACTCGGATCAAG+GGG + chr1_3:59869760-59869779 Msa0129790:CDS 45.0%
TGACAGCACTTATGCAGTCA+AGG + chr1_3:59870448-59870467 Msa0129790:CDS 45.0%
GACTGTAGATGCAGCTGTTA+GGG + chr1_3:59870470-59870489 Msa0129790:CDS 45.0%
ACTGTAGATGCAGCTGTTAG+GGG + chr1_3:59870471-59870490 Msa0129790:CDS 45.0%
! TCAGTCCCATTTTCTACGGT+GGG - chr1_3:59870573-59870592 None:intergenic 45.0%
! TTCAGTCCCATTTTCTACGG+TGG - chr1_3:59870574-59870593 None:intergenic 45.0%
! TGGGACTTGGAGTCTTGTAA+AGG + chr1_3:59870818-59870837 Msa0129790:intron 45.0%
! GGGACTTGGAGTCTTGTAAA+GGG + chr1_3:59870819-59870838 Msa0129790:intron 45.0%
GGTGAAGCAACATCCTCAAT+AGG - chr1_3:59871047-59871066 None:intergenic 45.0%
TAAATTGCAGATCTGCCACG+AGG - chr1_3:59871275-59871294 None:intergenic 45.0%
CAAACCTTGAGAGAAGAGGT+TGG - chr1_3:59871332-59871351 None:intergenic 45.0%
AAGGCAAACCTTGAGAGAAG+AGG - chr1_3:59871336-59871355 None:intergenic 45.0%
GTCTCTCTAATTCTACAGGG+TGG + chr1_3:59871410-59871429 Msa0129790:intron 45.0%
TCTCTAATTCTACAGGGTGG+CGG + chr1_3:59871413-59871432 Msa0129790:intron 45.0%
GTTTACCGGATCTACACAAG+GGG + chr1_3:59871493-59871512 Msa0129790:CDS 45.0%
GCAGTGCTCTATCTGTCTAT+AGG + chr1_3:59871722-59871741 Msa0129790:CDS 45.0%
GGCTTATGCAAGGAAGATGA+GGG - chr1_3:59871778-59871797 None:intergenic 45.0%
AGGCTTATGCAAGGAAGATG+AGG - chr1_3:59871779-59871798 None:intergenic 45.0%
TAGCAGAACAGGCTTATGCA+AGG - chr1_3:59871788-59871807 None:intergenic 45.0%
AAGTCCGAAGAAAACGTGAG+TGG + chr1_3:59871823-59871842 Msa0129790:CDS 45.0%
!! ACTGGATTTTGAGGAGGAAG+GGG - chr1_3:59871872-59871891 None:intergenic 45.0%
!! CACTGGATTTTGAGGAGGAA+GGG - chr1_3:59871873-59871892 None:intergenic 45.0%
!! TCACTGGATTTTGAGGAGGA+AGG - chr1_3:59871874-59871893 None:intergenic 45.0%
!! CATCTCACTGGATTTTGAGG+AGG - chr1_3:59871878-59871897 None:intergenic 45.0%
CTCCTCAAAATCCAGTGAGA+TGG + chr1_3:59871876-59871895 Msa0129790:CDS 45.0%
! AGCCATCTCACTGGATTTTG+AGG - chr1_3:59871881-59871900 None:intergenic 45.0%
GGTAGATGCGTCAAAATTGC+CGG + chr1_3:59872044-59872063 Msa0129790:CDS 45.0%
TGACTTCTGATTCTGAGCAC+TGG - chr1_3:59872118-59872137 None:intergenic 45.0%
TGACTTTGTGGTCTCTGTAG+TGG - chr1_3:59872217-59872236 None:intergenic 45.0%
ATTCCATATGAGTGCACACG+AGG + chr1_3:59872311-59872330 Msa0129790:CDS 45.0%
ATACCTCGTGTGCACTCATA+TGG - chr1_3:59872317-59872336 None:intergenic 45.0%
TGGAAGGAATCAAATGCCCA+TGG - chr1_3:59872457-59872476 None:intergenic 45.0%
! AGCCGTCTCTTTTTCTTCTG+CGG + chr1_3:59872661-59872680 Msa0129790:CDS 45.0%
TGAGGGACTTTCATGTGCAA+TGG - chr1_3:59872744-59872763 None:intergenic 45.0%
AAGTCCCTCAACATCATCTG+TGG + chr1_3:59872754-59872773 Msa0129790:CDS 45.0%
TCTATCGTAAACCCTGTGGA+TGG - chr1_3:59872785-59872804 None:intergenic 45.0%
AGCATCTATCGTAAACCCTG+TGG - chr1_3:59872789-59872808 None:intergenic 45.0%
GACAAGCCTGCTTTACCAAA+TGG + chr1_3:59872905-59872924 Msa0129790:CDS 45.0%
GTTGACCCATTTGGTAAAGC+AGG - chr1_3:59872914-59872933 None:intergenic 45.0%
! GGATTAGCAGTTGACCCATT+TGG - chr1_3:59872923-59872942 None:intergenic 45.0%
GCCAAATCAGCTCCAGTATT+TGG + chr1_3:59873019-59873038 Msa0129790:CDS 45.0%
! GGAGAAGGTTGATCCTTCAA+AGG + chr1_3:59873045-59873064 Msa0129790:CDS 45.0%
! GAAGGTTGATCCTTCAAAGG+AGG + chr1_3:59873048-59873067 Msa0129790:CDS 45.0%
GATGCAGTAAATGGGATTGG+TGG - chr1_3:59873124-59873143 None:intergenic 45.0%
ACTGCATCATCATCAGTTGG+TGG + chr1_3:59873136-59873155 Msa0129790:CDS 45.0%
GGTGAGTCTACTCCGAAATT+TGG + chr1_3:59873157-59873176 Msa0129790:CDS 45.0%
!! TGCTTCTTTTGACTCTCAGC+CGG + chr1_3:59873180-59873199 Msa0129790:CDS 45.0%
ACTAACCTGATTGATCCTCC+CGG - chr1_3:59873202-59873221 None:intergenic 45.0%
CCGCAACCATTTAAGGGAAT+TGG - chr1_3:59873404-59873423 None:intergenic 45.0%
CTTTCCCCGCAACCATTTAA+GGG - chr1_3:59873410-59873429 None:intergenic 45.0%
ACTTTCCCCGCAACCATTTA+AGG - chr1_3:59873411-59873430 None:intergenic 45.0%
TGCAGCTTTACTACTGTTGC+TGG + chr1_3:59873804-59873823 Msa0129790:intron 45.0%
!! ACTACTGTTGCTGGTTCAAC+TGG + chr1_3:59873813-59873832 Msa0129790:CDS 45.0%
!! GAATCTGATAGTGGTGATGC+TGG + chr1_3:59873855-59873874 Msa0129790:CDS 45.0%
CGATGCCCTAACAGAAAATC+CGG - chr1_3:59873895-59873914 None:intergenic 45.0%
! CGGATTTTCTGTTAGGGCAT+CGG + chr1_3:59873893-59873912 Msa0129790:CDS 45.0%
!! AATAATGGGTCCCTTGCTTC+AGG + chr1_3:59874086-59874105 Msa0129790:CDS 45.0%
GGAACGGAAGAAGAGAATGA+AGG - chr1_3:59874113-59874132 None:intergenic 45.0%
AATGCCACCACTTGCAGAAA+GGG - chr1_3:59874174-59874193 None:intergenic 45.0%
TAATGCCACCACTTGCAGAA+AGG - chr1_3:59874175-59874194 None:intergenic 45.0%
AATTCCAGTGGAAGCAGAAG+TGG - chr1_3:59874201-59874220 None:intergenic 45.0%
GATAAACCTGCTGATGTGAC+AGG - chr1_3:59874335-59874354 None:intergenic 45.0%
!! ATCTTCTGGCTCAAAACCAC+TGG + chr1_3:59874361-59874380 Msa0129790:CDS 45.0%
GCTCAAAACCACTGGAAACT+GGG + chr1_3:59874369-59874388 Msa0129790:CDS 45.0%
AACAGGCAAGATGCAGGAAT+CGG + chr1_3:59874392-59874411 Msa0129790:CDS 45.0%
AGCTCTTCATCAATGACAGC+TGG + chr1_3:59874488-59874507 Msa0129790:CDS 45.0%
!! CACCGAAATAACTCTGAGAC+TGG - chr1_3:59874520-59874539 None:intergenic 45.0%
GTTGTAAATACACCGGCAGA+AGG - chr1_3:59874578-59874597 None:intergenic 45.0%
TCTGCATCATCCCCATTGTT+TGG + chr1_3:59874626-59874645 Msa0129790:CDS 45.0%
CTGCATCATCCCCATTGTTT+GGG + chr1_3:59874627-59874646 Msa0129790:CDS 45.0%
TACCAGTCGACCCAAACAAT+GGG - chr1_3:59874640-59874659 None:intergenic 45.0%
TTACCAGTCGACCCAAACAA+TGG - chr1_3:59874641-59874660 None:intergenic 45.0%
TCCGGTACAACATTTGGACT+CGG + chr1_3:59874776-59874795 Msa0129790:CDS 45.0%
! GGCACAGGCTCTAGTTTATT+TGG + chr1_3:59874836-59874855 Msa0129790:CDS 45.0%
GAATGAAAACTGAGGAGCTG+AGG - chr1_3:59874993-59875012 None:intergenic 45.0%
CCAAAAGCAAAGACAGGGTT+AGG - chr1_3:59875061-59875080 None:intergenic 45.0%
! CCTAACCCTGTCTTTGCTTT+TGG + chr1_3:59875058-59875077 Msa0129790:CDS 45.0%
GCTGAACCAAAAGCAAAGAC+AGG - chr1_3:59875067-59875086 None:intergenic 45.0%
!! GATGAGTATGGTGGACAGTA+TGG + chr1_3:59875105-59875124 Msa0129790:CDS 45.0%
GCAGGTTGTTGACCAAACAT+AGG - chr1_3:59875166-59875185 None:intergenic 45.0%
AAATTTGATTGAACCGGGGC+AGG - chr1_3:59875184-59875203 None:intergenic 45.0%
! TTTGGAGCATCCACTCATTC+AGG + chr1_3:59875208-59875227 Msa0129790:CDS 45.0%
ACTTGCAAACTGGAAAGGAC+TGG - chr1_3:59875236-59875255 None:intergenic 45.0%
ACTAGCAAACTGGAAAGGAC+TGG - chr1_3:59875299-59875318 None:intergenic 45.0%
TGAAATGGAGAAGGGTTCTG+TGG - chr1_3:59875337-59875356 None:intergenic 45.0%
ACAGAACCCTTCTCCATTTC+AGG + chr1_3:59875336-59875355 Msa0129790:CDS 45.0%
CAGAAGCCTGAAATGGAGAA+GGG - chr1_3:59875345-59875364 None:intergenic 45.0%
! GGCAGTCTGGAATTTAATGC+AGG + chr1_3:59875364-59875383 Msa0129790:CDS 45.0%
CTGGAATTTAATGCAGGAGG+AGG + chr1_3:59875370-59875389 Msa0129790:CDS 45.0%
GAATTTAATGCAGGAGGAGG+AGG + chr1_3:59875373-59875392 Msa0129790:CDS 45.0%
ACGTTTACGGAACTTGCCAC+CGG - chr1_3:59866430-59866449 None:intergenic 50.0%
TTCTGCGGAAGGGACGTTTA+CGG - chr1_3:59866443-59866462 None:intergenic 50.0%
! GTCGTTTGAGTTCTGCGGAA+GGG - chr1_3:59866453-59866472 None:intergenic 50.0%
! TTAGGGTTTCTGAGTGCTGC+CGG - chr1_3:59866492-59866511 None:intergenic 50.0%
TGAGTGATGAGTCTGTGAGC+GGG - chr1_3:59866552-59866571 None:intergenic 50.0%
GCTCACAGACTCATCACTCA+TGG + chr1_3:59866552-59866571 Msa0129790:CDS 50.0%
GAAGAATTAGGAGCAGGAGG+GGG - chr1_3:59866624-59866643 None:intergenic 50.0%
CCTGAAGAATTAGGAGCAGG+AGG - chr1_3:59866627-59866646 None:intergenic 50.0%
CCTCCTGCTCCTAATTCTTC+AGG + chr1_3:59866624-59866643 Msa0129790:CDS 50.0%
ATTAGTGTCCCACACATCCG+AGG - chr1_3:59867244-59867263 None:intergenic 50.0%
AAGTTTGAACCCCCTGACCT+AGG + chr1_3:59867492-59867511 Msa0129790:intron 50.0%
AGTTTGAACCCCCTGACCTA+GGG + chr1_3:59867493-59867512 Msa0129790:intron 50.0%
GCATTTCAGCTGGTACTCAC+AGG + chr1_3:59867804-59867823 Msa0129790:intron 50.0%
TCTGCTTCGCTGCTATAGCA+CGG + chr1_3:59867855-59867874 Msa0129790:intron 50.0%
AGCAGAGGAATTGAGCTGTC+TGG + chr1_3:59868138-59868157 Msa0129790:intron 50.0%
AACCTAGAGCTTGACCCAAG+TGG - chr1_3:59869086-59869105 None:intergenic 50.0%
GTTTGTACTCCTGAGCGTGA+AGG + chr1_3:59869103-59869122 Msa0129790:intron 50.0%
!! CCTCACAAAGCTGGCTTGTA+AGG - chr1_3:59869201-59869220 None:intergenic 50.0%
! CCTTACAAGCCAGCTTTGTG+AGG + chr1_3:59869198-59869217 Msa0129790:intron 50.0%
TGAGAGTCAGATTCGACCTG+TGG + chr1_3:59869257-59869276 Msa0129790:intron 50.0%
GAGAGTCAGATTCGACCTGT+GGG + chr1_3:59869258-59869277 Msa0129790:intron 50.0%
!! TTCCCGTAGGTGTTGTTGTG+GGG + chr1_3:59869448-59869467 Msa0129790:intron 50.0%
TACCCCACAACAACACCTAC+GGG - chr1_3:59869453-59869472 None:intergenic 50.0%
!! TGTTCTGACTCGGATCAAGG+GGG + chr1_3:59869761-59869780 Msa0129790:CDS 50.0%
GGACTGTAGATGCAGCTGTT+AGG + chr1_3:59870469-59870488 Msa0129790:CDS 50.0%
CTGTTAGGGGAGAAGAGAAG+AGG + chr1_3:59870484-59870503 Msa0129790:CDS 50.0%
CAAAAGCTTACATGGGGAGC+AGG + chr1_3:59871078-59871097 Msa0129790:CDS 50.0%
ATTGTGCCAAGGGCTACTAC+TGG + chr1_3:59871209-59871228 Msa0129790:CDS 50.0%
TTGTGCCAAGGGCTACTACT+GGG + chr1_3:59871210-59871229 Msa0129790:CDS 50.0%
CTCTAATTCTACAGGGTGGC+GGG + chr1_3:59871414-59871433 Msa0129790:intron 50.0%
GTCTTCAACCCAGTCTGCAA+TGG + chr1_3:59871460-59871479 Msa0129790:CDS 50.0%
GGCATGATCCATTGCAGACT+GGG - chr1_3:59871471-59871490 None:intergenic 50.0%
TGGCATGATCCATTGCAGAC+TGG - chr1_3:59871472-59871491 None:intergenic 50.0%
!!! TAGACTTTTGACGGACTCGG+CGG - chr1_3:59871663-59871682 None:intergenic 50.0%
!! GATAGAGCACTGCCAGAAAG+AGG - chr1_3:59871715-59871734 None:intergenic 50.0%
!! CTGGATTTTGAGGAGGAAGG+GGG - chr1_3:59871871-59871890 None:intergenic 50.0%
ACCTTCAATGCTACGTGGAC+AGG + chr1_3:59872002-59872021 Msa0129790:CDS 50.0%
GGCTCTTCGAAGCTTGGAAA+TGG + chr1_3:59872023-59872042 Msa0129790:CDS 50.0%
GAGGTTGGGCCATACTATCA+AGG - chr1_3:59872566-59872585 None:intergenic 50.0%
TCTGTGGTATTGCCATCCAC+AGG + chr1_3:59872770-59872789 Msa0129790:CDS 50.0%
CTGTGGTATTGCCATCCACA+GGG + chr1_3:59872771-59872790 Msa0129790:CDS 50.0%
GTTGATCCTTCAAAGGAGGC+TGG + chr1_3:59873052-59873071 Msa0129790:CDS 50.0%
!! GCTTCTTTTGACTCTCAGCC+GGG + chr1_3:59873181-59873200 Msa0129790:CDS 50.0%
GAAGAGAATTGTGTTCGGCG+AGG - chr1_3:59873253-59873272 None:intergenic 50.0%
GAATGAAGGGCCTGAAGCAA+GGG - chr1_3:59874099-59874118 None:intergenic 50.0%
AGAATGAAGGGCCTGAAGCA+AGG - chr1_3:59874100-59874119 None:intergenic 50.0%
! AATGCCACTTCTGCTTCCAC+TGG + chr1_3:59874194-59874213 Msa0129790:CDS 50.0%
TTACTTGATGCAGCAAGCGC+AGG - chr1_3:59874236-59874255 None:intergenic 50.0%
AAGACGAAGTTGCCACCACT+GGG - chr1_3:59874280-59874299 None:intergenic 50.0%
TCCTTTCCTGTCACATCAGC+AGG + chr1_3:59874326-59874345 Msa0129790:CDS 50.0%
ACCTGCTGATGTGACAGGAA+AGG - chr1_3:59874330-59874349 None:intergenic 50.0%
GGCTCAAAACCACTGGAAAC+TGG + chr1_3:59874368-59874387 Msa0129790:CDS 50.0%
AACCACTGGAAACTGGGAAC+AGG + chr1_3:59874375-59874394 Msa0129790:CDS 50.0%
!!! AGCACAGCGAGTGCCATTTT+TGG + chr1_3:59874461-59874480 Msa0129790:CDS 50.0%
!!! GCACAGCGAGTGCCATTTTT+GGG + chr1_3:59874462-59874481 Msa0129790:CDS 50.0%
!! AGTTATTTCGGTGCTGCCAG+TGG + chr1_3:59874527-59874546 Msa0129790:CDS 50.0%
GGAACCAAACAGAGAACCAC+TGG - chr1_3:59874546-59874565 None:intergenic 50.0%
ACCAGTCGACCCAAACAATG+GGG - chr1_3:59874639-59874658 None:intergenic 50.0%
GCCGAGTCCAAATGTTGTAC+CGG - chr1_3:59874780-59874799 None:intergenic 50.0%
ACTAGAGTTGACTGCCGAAG+AGG - chr1_3:59874813-59874832 None:intergenic 50.0%
TCGGCAGTCAACTCTAGTAG+TGG + chr1_3:59874815-59874834 Msa0129790:CDS 50.0%
GTCAACTCTAGTAGTGGCAC+AGG + chr1_3:59874821-59874840 Msa0129790:CDS 50.0%
TCATCACCTTTGTCCGGGTT+TGG + chr1_3:59874908-59874927 Msa0129790:CDS 50.0%
! AGTACTGGACGTTCCAAACC+CGG - chr1_3:59874924-59874943 None:intergenic 50.0%
GGTGGAAGCAACAGTAGTAC+TGG - chr1_3:59874939-59874958 None:intergenic 50.0%
!! TATGGTGGACAGTATGGCTG+AGG + chr1_3:59875111-59875130 Msa0129790:CDS 50.0%
TGACCAAACATAGGACTCGC+AGG - chr1_3:59875157-59875176 None:intergenic 50.0%
!! AGGACTGGTTCCTGAATGAG+TGG - chr1_3:59875221-59875240 None:intergenic 50.0%
TCACAGGTTTCCACTCCTTC+AGG + chr1_3:59875271-59875290 Msa0129790:CDS 50.0%
!! TGGAAAGGACTGGTTCCTGA+AGG - chr1_3:59875226-59875245 None:intergenic 50.0%
AATGGAGAAGGGTTCTGTGG+AGG - chr1_3:59875334-59875353 None:intergenic 50.0%
CCAGAAGCCTGAAATGGAGA+AGG - chr1_3:59875346-59875365 None:intergenic 50.0%
CCTTCTCCATTTCAGGCTTC+TGG + chr1_3:59875343-59875362 Msa0129790:CDS 50.0%
AGACTGCCAGAAGCCTGAAA+TGG - chr1_3:59875352-59875371 None:intergenic 50.0%
ATTTCAGGCTTCTGGCAGTC+TGG + chr1_3:59875351-59875370 Msa0129790:CDS 50.0%
AGTTTCTCGTTAGGCTCAGG+TGG + chr1_3:59875397-59875416 Msa0129790:CDS 50.0%
! TCAGGTGGTGGTGATAAGTC+TGG + chr1_3:59875412-59875431 Msa0129790:CDS 50.0%
TCTCTCTGAACGAACGGCGA+TGG + chr1_3:59866365-59866384 Msa0129790:exon 55.0%
! CGTCGTTTGAGTTCTGCGGA+AGG - chr1_3:59866454-59866473 None:intergenic 55.0%
! ACGGCGTCGTTTGAGTTCTG+CGG - chr1_3:59866458-59866477 None:intergenic 55.0%
ATCATCATCACGGCCATGGG+CGG + chr1_3:59867067-59867086 Msa0129790:intron 55.0%
CTATAGCAGCGAAGCAGAGC+AGG - chr1_3:59867853-59867872 None:intergenic 55.0%
!! GGGTTTTGTGGTGGAAGCAG+AGG + chr1_3:59868123-59868142 Msa0129790:intron 55.0%
ATTTGGGTGTCCTGGGGCAA+GGG + chr1_3:59868193-59868212 Msa0129790:intron 55.0%
TCTAGATCCGTTGGGCCACT+TGG + chr1_3:59869068-59869087 Msa0129790:intron 55.0%
CTAGATCCGTTGGGCCACTT+GGG + chr1_3:59869069-59869088 Msa0129790:intron 55.0%
ATCGTGGGCCTATAACCCAC+AGG - chr1_3:59869276-59869295 None:intergenic 55.0%
CCATGTGAGATGGCTCAGAG+TGG - chr1_3:59871000-59871019 None:intergenic 55.0%
CCACTCTGAGCCATCTCACA+TGG + chr1_3:59870997-59871016 Msa0129790:intron 55.0%
!! TCGCACGCCTAGCATTGATG+AGG - chr1_3:59871117-59871136 None:intergenic 55.0%
CGTGCGATATCCTGCTCGTA+GGG + chr1_3:59871130-59871149 Msa0129790:CDS 55.0%
GTTGTGTCTTCCCTACGAGC+AGG - chr1_3:59871143-59871162 None:intergenic 55.0%
TTTGTGACCCCAAGACCTCG+TGG + chr1_3:59871257-59871276 Msa0129790:CDS 55.0%
AGATCTGCCACGAGGTCTTG+GGG - chr1_3:59871267-59871286 None:intergenic 55.0%
CAGATCTGCCACGAGGTCTT+GGG - chr1_3:59871268-59871287 None:intergenic 55.0%
! GCAGACTGGGTTGAAGACGA+AGG - chr1_3:59871458-59871477 None:intergenic 55.0%
!!! TTTTGACGGACTCGGCGGAT+AGG - chr1_3:59871658-59871677 None:intergenic 55.0%
AAGAGGTGAGCTGGAGCCTT+TGG - chr1_3:59871698-59871717 None:intergenic 55.0%
ACTGCCAGAAAGAGGTGAGC+TGG - chr1_3:59871707-59871726 None:intergenic 55.0%
! GCCTGTCCACGTAGCATTGA+AGG - chr1_3:59872006-59872025 None:intergenic 55.0%
TGGACAGGCTCTTCGAAGCT+TGG + chr1_3:59872017-59872036 Msa0129790:CDS 55.0%
GATCCTTCAAAGGAGGCTGG+TGG + chr1_3:59873055-59873074 Msa0129790:CDS 55.0%
!! TCTTTTGACTCTCAGCCGGG+AGG + chr1_3:59873184-59873203 Msa0129790:CDS 55.0%
AGCTCGTCCCTTTCTGCAAG+TGG + chr1_3:59874164-59874183 Msa0129790:CDS 55.0%
TCGTCCCTTTCTGCAAGTGG+TGG + chr1_3:59874167-59874186 Msa0129790:CDS 55.0%
AGACGAAGTTGCCACCACTG+GGG - chr1_3:59874279-59874298 None:intergenic 55.0%
GAAGACGAAGTTGCCACCAC+TGG - chr1_3:59874281-59874300 None:intergenic 55.0%
TGCCTGTTCCCAGTTTCCAG+TGG - chr1_3:59874380-59874399 None:intergenic 55.0%
ACTGGGAACAGGCAAGATGC+AGG + chr1_3:59874386-59874405 Msa0129790:CDS 55.0%
GGCAGTTCTTCTGCTGCAGT+TGG + chr1_3:59874437-59874456 Msa0129790:CDS 55.0%
GCTGCCAGTGGTTCTCTGTT+TGG + chr1_3:59874539-59874558 Msa0129790:CDS 55.0%
TCCCAAGCTTCTCCTTCTGC+CGG + chr1_3:59874563-59874582 Msa0129790:CDS 55.0%
ACCGGCAGAAGGAGAAGCTT+GGG - chr1_3:59874567-59874586 None:intergenic 55.0%
TCCCCATTGTTTGGGTCGAC+TGG + chr1_3:59874635-59874654 Msa0129790:CDS 55.0%
CGGCACATCTGCTTCCTCTT+CGG + chr1_3:59874796-59874815 Msa0129790:CDS 55.0%
GACGTTCCAAACCCGGACAA+AGG - chr1_3:59874917-59874936 None:intergenic 55.0%
GGCAAACATGGGTGAACTGG+TGG - chr1_3:59874957-59874976 None:intergenic 55.0%
GGAGGCAAACATGGGTGAAC+TGG - chr1_3:59874960-59874979 None:intergenic 55.0%
CTGGTCGTGGAGGCAAACAT+GGG - chr1_3:59874968-59874987 None:intergenic 55.0%
ACTGGTCGTGGAGGCAAACA+TGG - chr1_3:59874969-59874988 None:intergenic 55.0%
AAACTGAGGAGCTGAGGCAC+TGG - chr1_3:59874987-59875006 None:intergenic 55.0%
AAAAGCAGGCTGTGTGGAGG+TGG - chr1_3:59875032-59875051 None:intergenic 55.0%
! ACCTCCACACAGCCTGCTTT+TGG + chr1_3:59875031-59875050 Msa0129790:CDS 55.0%
TCCAAAAGCAGGCTGTGTGG+AGG - chr1_3:59875035-59875054 None:intergenic 55.0%
GCTTCCAAAAGCAGGCTGTG+TGG - chr1_3:59875038-59875057 None:intergenic 55.0%
GGGTTAGGGCTTCCAAAAGC+AGG - chr1_3:59875046-59875065 None:intergenic 55.0%
CCAAACATAGGACTCGCAGG+CGG - chr1_3:59875154-59875173 None:intergenic 55.0%
GTTTGGTCAACAACCTGCCC+CGG + chr1_3:59875168-59875187 Msa0129790:CDS 55.0%
!! AGGACTGGTTCCTGAAGGAG+TGG - chr1_3:59875284-59875303 None:intergenic 55.0%
GGAGGAGGGAGTTTCTCGTT+AGG + chr1_3:59875388-59875407 Msa0129790:CDS 55.0%
GGGAGTTTCTCGTTAGGCTC+AGG + chr1_3:59875394-59875413 Msa0129790:CDS 55.0%
TTCTCGTTAGGCTCAGGTGG+TGG + chr1_3:59875400-59875419 Msa0129790:CDS 55.0%
TGAACGAACGGCGATGGCGA+CGG + chr1_3:59866371-59866390 Msa0129790:exon 60.0%
!! CCACCGGTTCCACCTTCGTA+TGG - chr1_3:59866414-59866433 None:intergenic 60.0%
CCATACGAAGGTGGAACCGG+TGG + chr1_3:59866411-59866430 Msa0129790:CDS 60.0%
AAGACGCTTGCGGAGGAGAG+AGG - chr1_3:59866595-59866614 None:intergenic 60.0%
GAATTAGGAGCAGGAGGGGG+AGG - chr1_3:59866621-59866640 None:intergenic 60.0%
! TTTGTAGCTGGCTCCGCCCA+TGG - chr1_3:59867083-59867102 None:intergenic 60.0%
GCGGAGCCAGCTACAAACCA+GGG + chr1_3:59867086-59867105 Msa0129790:intron 60.0%
CGGAGCCAGCTACAAACCAG+GGG + chr1_3:59867087-59867106 Msa0129790:intron 60.0%
GGAGCCAGCTACAAACCAGG+GGG + chr1_3:59867088-59867107 Msa0129790:intron 60.0%
! TGCACCCCCTGGTTTGTAGC+TGG - chr1_3:59867095-59867114 None:intergenic 60.0%
TTGCCAGGACCCTAGGTCAG+GGG - chr1_3:59867505-59867524 None:intergenic 60.0%
GTTGCCAGGACCCTAGGTCA+GGG - chr1_3:59867506-59867525 None:intergenic 60.0%
CCTGGCAACGCCACTGATCA+CGG + chr1_3:59867517-59867536 Msa0129790:intron 60.0%
CATTTGGGTGTCCTGGGGCA+AGG + chr1_3:59868192-59868211 Msa0129790:intron 60.0%
TACACTTGTGCCCTTGCCCC+AGG - chr1_3:59868206-59868225 None:intergenic 60.0%
GCTTGACCCAAGTGGCCCAA+CGG - chr1_3:59869078-59869097 None:intergenic 60.0%
GGCCACTTGGGTCAAGCTCT+AGG + chr1_3:59869081-59869100 Msa0129790:intron 60.0%
! TCCTGAGCGTGAAGGGTGTG+TGG + chr1_3:59869111-59869130 Msa0129790:intron 60.0%
ACCACACACCCTTCACGCTC+AGG - chr1_3:59869115-59869134 None:intergenic 60.0%
GCGTGCGATATCCTGCTCGT+AGG + chr1_3:59871129-59871148 Msa0129790:CDS 60.0%
GTGTGCCCAGTAGTAGCCCT+TGG - chr1_3:59871218-59871237 None:intergenic 60.0%
GCAGATCTGCCACGAGGTCT+TGG - chr1_3:59871269-59871288 None:intergenic 60.0%
GGCTCCAGCTCACCTCTTTC+TGG + chr1_3:59871700-59871719 Msa0129790:CDS 60.0%
GGAAGGGGGAAAGCTCGTAC+TGG - chr1_3:59871857-59871876 None:intergenic 60.0%
GGACCACCAGCCTCCTTTGA+AGG - chr1_3:59873061-59873080 None:intergenic 60.0%
CTCAGCCGGGAGGATCAATC+AGG + chr1_3:59873194-59873213 Msa0129790:CDS 60.0%
TTCCTCTTCCTCCACCCCAG+TGG + chr1_3:59874262-59874281 Msa0129790:CDS 60.0%
CACCGGCAGAAGGAGAAGCT+TGG - chr1_3:59874568-59874587 None:intergenic 60.0%
CCGCCTGCGAGTCCTATGTT+TGG + chr1_3:59875151-59875170 Msa0129790:CDS 60.0%
GAACGGCGATGGCGACGGAA+GGG + chr1_3:59866376-59866395 Msa0129790:exon 65.0%
GACGCCGTACGATCGTCCTC+CGG + chr1_3:59866470-59866489 Msa0129790:CDS 65.0%
GCTGCCGGAGGACGATCGTA+CGG - chr1_3:59866477-59866496 None:intergenic 65.0%
! GGGTTTCTGAGTGCTGCCGG+AGG - chr1_3:59866489-59866508 None:intergenic 65.0%
GAGGAGGAAGACGCTTGCGG+AGG - chr1_3:59866602-59866621 None:intergenic 65.0%
GGGGAGGAGGAAGACGCTTG+CGG - chr1_3:59866605-59866624 None:intergenic 65.0%
TTAGGAGCAGGAGGGGGAGG+AGG - chr1_3:59866618-59866637 None:intergenic 65.0%
GGCGGAGCCAGCTACAAACC+AGG + chr1_3:59867085-59867104 Msa0129790:intron 65.0%
AACCCCCTGACCTAGGGTCC+TGG + chr1_3:59867499-59867518 Msa0129790:intron 65.0%
TGCCAGGACCCTAGGTCAGG+GGG - chr1_3:59867504-59867523 None:intergenic 65.0%
CGTTGCCAGGACCCTAGGTC+AGG - chr1_3:59867507-59867526 None:intergenic 65.0%
AGTGGCGTTGCCAGGACCCT+AGG - chr1_3:59867512-59867531 None:intergenic 65.0%
CCGTGATCAGTGGCGTTGCC+AGG - chr1_3:59867520-59867539 None:intergenic 65.0%
!! GGTGGCGGGCTTGCTGTTCA+TGG + chr1_3:59871428-59871447 Msa0129790:CDS 65.0%
CACCACTGGGGTGGAGGAAG+AGG - chr1_3:59874267-59874286 None:intergenic 65.0%
CTCTTCCTCCACCCCAGTGG+TGG + chr1_3:59874265-59874284 Msa0129790:CDS 65.0%
AGTTGCCACCACTGGGGTGG+AGG - chr1_3:59874273-59874292 None:intergenic 65.0%
CGAAGTTGCCACCACTGGGG+TGG - chr1_3:59874276-59874295 None:intergenic 65.0%
!! AGCTGAGGCACTGGTCGTGG+AGG - chr1_3:59874978-59874997 None:intergenic 65.0%
!! AGGAGCTGAGGCACTGGTCG+TGG - chr1_3:59874981-59875000 None:intergenic 65.0%
AGCAGGCTGTGTGGAGGTGG+AGG - chr1_3:59875029-59875048 None:intergenic 65.0%
CGAACGGCGATGGCGACGGA+AGG + chr1_3:59866375-59866394 Msa0129790:exon 70.0%
GGCGATGGCGACGGAAGGGA+AGG + chr1_3:59866380-59866399 Msa0129790:exon 70.0%
GGGGGTTCAGCTGCACCCCC+TGG - chr1_3:59867106-59867125 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 59866321 59875477 59866321 ID=Msa0129790;Name=Msa0129790
chr1_3 mRNA 59866321 59875477 59866321 ID=Msa0129790-mRNA-1;Parent=Msa0129790;Name=Msa0129790-mRNA-1;_AED=0.03;_eAED=0.03;_QI=63|0.75|0.66|1|1|1|9|0|1375
chr1_3 exon 59866321 59866645 59866321 ID=Msa0129790-mRNA-1:exon:19534;Parent=Msa0129790-mRNA-1
chr1_3 exon 59868535 59868626 59868535 ID=Msa0129790-mRNA-1:exon:19535;Parent=Msa0129790-mRNA-1
chr1_3 exon 59869698 59869837 59869698 ID=Msa0129790-mRNA-1:exon:19536;Parent=Msa0129790-mRNA-1
chr1_3 exon 59870431 59870629 59870431 ID=Msa0129790-mRNA-1:exon:19537;Parent=Msa0129790-mRNA-1
chr1_3 exon 59871041 59871346 59871041 ID=Msa0129790-mRNA-1:exon:19538;Parent=Msa0129790-mRNA-1
chr1_3 exon 59871428 59871514 59871428 ID=Msa0129790-mRNA-1:exon:19539;Parent=Msa0129790-mRNA-1
chr1_3 exon 59871604 59872332 59871604 ID=Msa0129790-mRNA-1:exon:19540;Parent=Msa0129790-mRNA-1
chr1_3 exon 59872572 59873215 59872572 ID=Msa0129790-mRNA-1:exon:19541;Parent=Msa0129790-mRNA-1
chr1_3 exon 59873809 59875477 59873809 ID=Msa0129790-mRNA-1:exon:19542;Parent=Msa0129790-mRNA-1
chr1_3 five_prime_UTR 59866321 59866383 59866321 ID=Msa0129790-mRNA-1:five_prime_utr;Parent=Msa0129790-mRNA-1
chr1_3 CDS 59866384 59866645 59866384 ID=Msa0129790-mRNA-1:cds;Parent=Msa0129790-mRNA-1
chr1_3 CDS 59868535 59868626 59868535 ID=Msa0129790-mRNA-1:cds;Parent=Msa0129790-mRNA-1
chr1_3 CDS 59869698 59869837 59869698 ID=Msa0129790-mRNA-1:cds;Parent=Msa0129790-mRNA-1
chr1_3 CDS 59870431 59870629 59870431 ID=Msa0129790-mRNA-1:cds;Parent=Msa0129790-mRNA-1
chr1_3 CDS 59871041 59871346 59871041 ID=Msa0129790-mRNA-1:cds;Parent=Msa0129790-mRNA-1
chr1_3 CDS 59871428 59871514 59871428 ID=Msa0129790-mRNA-1:cds;Parent=Msa0129790-mRNA-1
chr1_3 CDS 59871604 59872332 59871604 ID=Msa0129790-mRNA-1:cds;Parent=Msa0129790-mRNA-1
chr1_3 CDS 59872572 59873215 59872572 ID=Msa0129790-mRNA-1:cds;Parent=Msa0129790-mRNA-1
chr1_3 CDS 59873809 59875477 59873809 ID=Msa0129790-mRNA-1:cds;Parent=Msa0129790-mRNA-1
Gene Sequence

>Msa0129790

ATGGCGACGGAAGGGAAGGAGAAGAATCCATACGAAGGTGGAACCGGTGGCAAGTTCCGTAAACGTCCCTTCCGCAGAACTCAAACGACGCCGTACGATCGTCCTCCGGCAGCACTCAGAAACCCTAACAGCAACAACAACGGTTGGATTTCGAAGCTTGTTGATCCCGCTCACAGACTCATCACTCATGGCGCTCACTCTCTCTTCTCCTCTCTCCTCCGCAAGCGTCTTCCTCCTCCCCCTCCTGCTCCTAATTCTTCAGGGTTGGAACAAGAAATGAGACAGGACAATCATCAAGAAGAAGCTGTAGAGATGGAACAAGAAATGAGACAGGACAATCATCAAGAAGAAGCTGTTGCAAAAGAATCTTCTGGCAATCAACAAAGAGCAGTTGGTGAAAGTAATGTTCAAATTAATTGTTCTGACTCGGATCAAGGGGGATTGACTGATCTTGAGAAACTGTTGAAGCATAAGACTTTCACAAGGCATGTTTTGTCTGAGATTGATCATTTGACAGCACTTATGCAGTCAAGGACTGTAGATGCAGCTGTTAGGGGAGAAGAGAAGAGGTCAGAAATGGTTCTCTCAGAACCAATATTACCTTCTGGACAAAAGGAAGAATATCCCAAAACACCCACCGTAGAAAATGGGACTGAAAACCATCTTGCATTAACTCAACCTGTTACTTCCAGTGTTCCTATTGAGGATGTTGCTTCACCTGTAGAGCTTGCAAAAGCTTACATGGGGAGCAGGCAATCCAATGTATCCTCATCAATGCTAGGCGTGCGATATCCTGCTCGTAGGGAAGACACAACTCCTCTAAAAAGTGAAAAATCTCCGTATAAATCCCCTATTATGTCGATTGTGCCAAGGGCTACTACTGGGCACACTGCAATTCATGAAAACGGTTTTGTGACCCCAAGACCTCGTGGCAGATCTGCAATTTATAGTATGGCTCGTACACCGTATACCAGAATTTATCCAACCTCTTCTCTCAAGGGTGGCGGGCTTGCTGTTCATGGCGAGCCTTCGTCTTCAACCCAGTCTGCAATGGATCATGCCATGTTTACCGGATCTACACAAGGGGGGATAAAGCGTAGAAATTTAGCAATGGATAATAATATAGGATCTGTTGGTCCTATCCGCCGAGTCCGTCAAAAGTCTAATCTTCTATATTCCAAAGGCTCCAGCTCACCTCTTTCTGGCAGTGCTCTATCTGTCTATAGGAACGGATTGGGTATTGAAGCTGCTCAGCAACCCTCATCTTCCTTGCATAAGCCTGTTCTGCTAGATAAAGTTAAGCACAAGTCCGAAGAAAACGTGAGTGGAACTAAGTCCAGTACGAGCTTTCCCCCTTCCTCCTCAAAATCCAGTGAGATGGCTACAAAAATTTTGCAGCAACTTGATAAAATAGCTTCTCCCAGAGAAAAATCATCTGAATCAAGGCTACCAGTTGTGAGTGATAGTTCATCAATGAAGTTATCACCTTCAATGCTACGTGGACAGGCTCTTCGAAGCTTGGAAATGGTAGATGCGTCAAAATTGCCGGACAGTTTACAAGGAAATAATTTGGATGGCACATTTGGAAATTTTACTTCCAGTGCTCAGAATCAGAAGTCAATTTCACATAGAGATAAGGGTGAAAACAGTCCATTGAAACTTGTTGCTTCTTCCAATGAATCGGTTCCTATTGTAACCACTACAGAGACCACAAAGTCAAGCAATCAAGTCTTGTCTAGTGAAAATTCTTTTATGATGAAATCGGTTTCTAACCCTACACAAAAGAAGCGAGCATTCCATATGAGTGCACACGAGTATGGCCCAACCTCAGATCATGATTGTTCTCTTTTCTTTTTGTCTCCTCTATTAAAGAATTCTCTGGACTTGGGTGATAATGCTTATAGAGCCGTCTCTTTTTCTTCTGCGGAAAAAGAATCAAAAAGCGCCATTGTTATTGCGGACAAAGTTTCTTCTGGTTCTGAAGCCATTGCACATGAAAGTCCCTCAACATCATCTGTGGTATTGCCATCCACAGGGTTTACGATAGATGCTCAAGCTCATGTTAAGACAACTGATGGTGGAGCTAATGTTAAGACATCTGTGGCTACAGTTGCAGTTACAGCACCTACAATAACAACTTTTGGTTCTGACAAGCCTGCTTTACCAAATGGGTCAACTGCTAATCCTTCTTTGTTTAATTTTTCTAGTAAGAATATCTCGTCAGCAGAGTTATCAACTTCTGTTGCTTCATCAAAGGAGATAGCCAAATCAGCTCCAGTATTTGGTTTGGAGAAGGTTGATCCTTCAAAGGAGGCTGGTGGTCCATCAGTAAACTTTGACACCAAGCAAAATGTTTTCAAGGTTCCACCAATCCCATTTACTGCATCATCATCAGTTGGTGGTGAGTCTACTCCGAAATTTGGTGCTTCTTTTGACTCTCAGCCGGGAGGATCAATCAGCTTTACTACTGTTGCTGGTTCAACTGGTTCTATGCAAAAAGTTTGTGAATCTGATAGTGGTGATGCTGGGACTGATAAAAATACCGGATTTTCTGTTAGGGCATCGGAACTAGCTGTTTCATCTGCAGCATCAACATCATTGTTGACACCACCAAATAGTATATTCAAATTTGGCCATAGTTCAAATCAAAATAATGGGTCTCTTGGTTCAGGCCCTTCATTTTCTTCTTCCTTTCCATCTCTCATATCAAATAACTTTAGCAACAGTTCAAATCAAAATAATGGGTCCCTTGCTTCAGGCCCTTCATTCTCTTCTTCCGTTCCATCTCTTGTATCAAATAACTTTAGCAACAGTAGCTCGTCCCTTTCTGCAAGTGGTGGCATTAATGCCACTTCTGCTTCCACTGGAATTAGCATGACAACTCCTGCGCTTGCTGCATCAAGTAATAACTGTTCCTCTTCCTCCACCCCAGTGGTGGCAACTTCGTCTTCAACAACTTCCCTTTTCAAATTCGGTTCCTTTCCTGTCACATCAGCAGGTTTATCTGTATCATCTTCTGGCTCAAAACCACTGGAAACTGGGAACAGGCAAGATGCAGGAATCGGTAGTTTTAGCAGCACTGCATTTGGCAGTTCTTCTGCTGCAGTTGGAAGCACAGCGAGTGCCATTTTTGGGTTCAGCTCTTCATCAATGACAGCTGGAGCTAGCCAGTCTCAGAGTTATTTCGGTGCTGCCAGTGGTTCTCTGTTTGGTTCCCAAGCTTCTCCTTCTGCCGGTGTATTTACAACTTCTACTCAGACCCAGTCAGTTCAATCATCTGCATCATCCCCATTGTTTGGGTCGACTGGTAAGACAGATATTTCTTCTGGGAGTTCTTTGTTTCCTTCTTTAAGTTCTGCCACAAATACATCTTTTTCTTCTGGGAGTTCAATGTTTCCTTCAAGTTCTACCACTAACGTTTTCAATTCCGGTACAACATTTGGACTCGGCACATCTGCTTCCTCTTCGGCAGTCAACTCTAGTAGTGGCACAGGCTCTAGTTTATTTGGGGCTTCTAGTTGTCAACCCAGCAATTCTCTATTTGGTTCCTCATTTAGTTCATCACCTTTGTCCGGGTTTGGAACGTCCAGTACTACTGTTGCTTCCACCAGTTCACCCATGTTTGCCTCCACGACCAGTGCCTCAGCTCCTCAGTTTTCATTCACTTCAGCTGTAGCCTCCACCTCCACACAGCCTGCTTTTGGAAGCCCTAACCCTGTCTTTGCTTTTGGTTCAGCTCCAGTTAATAATGATCAGATGAGTATGGTGGACAGTATGGCTGAGGACAGTGTTCAAGCGACTCCGCCTGCGAGTCCTATGTTTGGTCAACAACCTGCCCCGGTTCAATCAAATTTTGTATTTGGAGCATCCACTCATTCAGGAACCAGTCCTTTCCAGTTTGCAAGTCAACAGAACATTGCTTCACAGGTTTCCACTCCTTCAGGAACCAGTCCTTTCCAGTTTGCTAGTCAACAGAACATTCCTCCACAGAACCCTTCTCCATTTCAGGCTTCTGGCAGTCTGGAATTTAATGCAGGAGGAGGAGGGAGTTTCTCGTTAGGCTCAGGTGGTGGTGATAAGTCTGGTCGAAAAATTATTAAAGTCAAACATAGAAACCGTAAGAAGTAA
Protein sequence

>Msa0129790

MATEGKEKNPYEGGTGGKFRKRPFRRTQTTPYDRPPAALRNPNSNNNGWISKLVDPAHRLITHGAHSLFSSLLRKRLPPPPPAPNSSGLEQEMRQDNHQEEAVEMEQEMRQDNHQEEAVAKESSGNQQRAVGESNVQINCSDSDQGGLTDLEKLLKHKTFTRHVLSEIDHLTALMQSRTVDAAVRGEEKRSEMVLSEPILPSGQKEEYPKTPTVENGTENHLALTQPVTSSVPIEDVASPVELAKAYMGSRQSNVSSSMLGVRYPARREDTTPLKSEKSPYKSPIMSIVPRATTGHTAIHENGFVTPRPRGRSAIYSMARTPYTRIYPTSSLKGGGLAVHGEPSSSTQSAMDHAMFTGSTQGGIKRRNLAMDNNIGSVGPIRRVRQKSNLLYSKGSSSPLSGSALSVYRNGLGIEAAQQPSSSLHKPVLLDKVKHKSEENVSGTKSSTSFPPSSSKSSEMATKILQQLDKIASPREKSSESRLPVVSDSSSMKLSPSMLRGQALRSLEMVDASKLPDSLQGNNLDGTFGNFTSSAQNQKSISHRDKGENSPLKLVASSNESVPIVTTTETTKSSNQVLSSENSFMMKSVSNPTQKKRAFHMSAHEYGPTSDHDCSLFFLSPLLKNSLDLGDNAYRAVSFSSAEKESKSAIVIADKVSSGSEAIAHESPSTSSVVLPSTGFTIDAQAHVKTTDGGANVKTSVATVAVTAPTITTFGSDKPALPNGSTANPSLFNFSSKNISSAELSTSVASSKEIAKSAPVFGLEKVDPSKEAGGPSVNFDTKQNVFKVPPIPFTASSSVGGESTPKFGASFDSQPGGSISFTTVAGSTGSMQKVCESDSGDAGTDKNTGFSVRASELAVSSAASTSLLTPPNSIFKFGHSSNQNNGSLGSGPSFSSSFPSLISNNFSNSSNQNNGSLASGPSFSSSVPSLVSNNFSNSSSSLSASGGINATSASTGISMTTPALAASSNNCSSSSTPVVATSSSTTSLFKFGSFPVTSAGLSVSSSGSKPLETGNRQDAGIGSFSSTAFGSSSAAVGSTASAIFGFSSSSMTAGASQSQSYFGAASGSLFGSQASPSAGVFTTSTQTQSVQSSASSPLFGSTGKTDISSGSSLFPSLSSATNTSFSSGSSMFPSSSTTNVFNSGTTFGLGTSASSSAVNSSSGTGSSLFGASSCQPSNSLFGSSFSSSPLSGFGTSSTTVASTSSPMFASTTSASAPQFSFTSAVASTSTQPAFGSPNPVFAFGSAPVNNDQMSMVDSMAEDSVQATPPASPMFGQQPAPVQSNFVFGASTHSGTSPFQFASQQNIASQVSTPSGTSPFQFASQQNIPPQNPSPFQASGSLEFNAGGGGSFSLGSGGGDKSGRKIIKVKHRNRKK*