Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1105090 | KEH22814.1 | 93.269 | 208 | 14 | 0 | 1 | 208 | 1 | 208 | 3.93e-141 | 402 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1105090 | sp|Q9FKB5|KRP3_ARATH | 47.111 | 225 | 96 | 9 | 1 | 207 | 1 | 220 | 1.93e-49 | 163 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1105090 | A0A072TZ90 | 93.269 | 208 | 14 | 0 | 1 | 208 | 1 | 208 | 1.88e-141 | 402 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0074950 | Msa1105090 | 0.803997 | 2.668631e-49 | -8.615850e-47 |
| Msa0683060 | Msa1105090 | 0.844826 | 5.943100e-59 | -8.615850e-47 |
| Msa0694000 | Msa1105090 | 0.805083 | 1.584389e-49 | -8.615850e-47 |
| Msa0719490 | Msa1105090 | 0.816044 | 6.774465e-52 | -8.615850e-47 |
| Msa0802470 | Msa1105090 | 0.808593 | 2.870211e-50 | -8.615850e-47 |
| Msa0129790 | Msa1105090 | 0.830724 | 2.499607e-55 | -8.615850e-47 |
| Msa0423360 | Msa1105090 | 0.800176 | 1.629655e-48 | -8.615850e-47 |
| Msa0459770 | Msa1105090 | 0.806884 | 6.623274e-50 | -8.615850e-47 |
| Msa0981820 | Msa1105090 | 0.810021 | 1.417811e-50 | -8.615850e-47 |
| Msa1105090 | Msa1131390 | 0.819542 | 1.099381e-52 | -8.615850e-47 |
| Msa1105090 | Msa1395230 | 0.807653 | 4.549967e-50 | -8.615850e-47 |
| Msa0272480 | Msa1105090 | 0.808133 | 3.597107e-50 | -8.615850e-47 |
| Msa0312690 | Msa1105090 | 0.822342 | 2.493235e-53 | -8.615850e-47 |
| Msa0547460 | Msa1105090 | 0.813069 | 3.084298e-51 | -8.615850e-47 |
| Msa0548280 | Msa1105090 | 0.809634 | 1.717098e-50 | -8.615850e-47 |
| Msa0602210 | Msa1105090 | 0.843308 | 1.517323e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1105090 | MtrunA17_Chr7g0237171 | 93.269 | 208 | 14 | 0 | 1 | 208 | 41 | 248 | 1.07e-144 | 403 |
| Msa1105090 | MtrunA17_Chr7g0237211 | 92.788 | 208 | 14 | 1 | 1 | 208 | 1 | 207 | 6.60e-143 | 397 |
| Msa1105090 | MtrunA17_Chr1g0185961 | 34.874 | 238 | 100 | 10 | 1 | 204 | 1 | 217 | 1.11e-24 | 96.7 |
| Msa1105090 | MtrunA17_Chr5g0402391 | 30.412 | 194 | 103 | 7 | 25 | 205 | 5 | 179 | 1.56e-15 | 71.6 |
| Msa1105090 | MtrunA17_Chr4g0045111 | 63.158 | 38 | 14 | 0 | 168 | 205 | 113 | 150 | 5.36e-12 | 61.2 |
| Msa1105090 | MtrunA17_Chr8g0374981 | 53.191 | 47 | 22 | 0 | 161 | 207 | 127 | 173 | 1.29e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1105090 | AT5G48820.1 | 47.111 | 225 | 96 | 9 | 1 | 207 | 1 | 220 | 1.96e-50 | 163 |
| Msa1105090 | AT5G48820.2 | 43.568 | 241 | 99 | 8 | 1 | 207 | 1 | 238 | 9.12e-48 | 157 |
| Msa1105090 | AT2G32710.2 | 39.474 | 190 | 84 | 5 | 47 | 207 | 97 | 284 | 5.02e-31 | 115 |
| Msa1105090 | AT2G32710.1 | 38.860 | 193 | 84 | 5 | 47 | 207 | 97 | 287 | 9.26e-31 | 114 |
| Msa1105090 | AT3G24810.1 | 33.624 | 229 | 90 | 7 | 1 | 208 | 1 | 188 | 1.80e-28 | 105 |
| Msa1105090 | AT1G49620.3 | 55.556 | 45 | 20 | 0 | 163 | 207 | 154 | 198 | 1.08e-13 | 67.4 |
| Msa1105090 | AT1G49620.1 | 55.556 | 45 | 20 | 0 | 163 | 207 | 149 | 193 | 1.11e-13 | 67.4 |
Find 90 sgRNAs with CRISPR-Local
Find 200 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTGATTCGGCGGAGATTTC+TGG | 0.134094 | 7_3:+43226746 | None:intergenic |
| GCAGCAACAAGCATTATTTA+TGG | 0.177822 | 7_3:-43224264 | Msa1105090:CDS |
| GGCGACATCGCCGGTGGTTT+TGG | 0.265337 | 7_3:+43226840 | None:intergenic |
| CTGCTCCCGCTGGAAATTCT+AGG | 0.310709 | 7_3:-43226645 | Msa1105090:CDS |
| CTTTGTCTTGTGGTTGAACC+AGG | 0.312665 | 7_3:+43224371 | None:intergenic |
| GTAAGGGTAGGGAGGGTATA+TGG | 0.317377 | 7_3:-43223894 | Msa1105090:three_prime_UTR |
| TTTCTTCTCTTTCAATTCAA+TGG | 0.322435 | 7_3:-43226881 | Msa1105090:exon |
| GCACACCTTGTAGTTTAATC+AGG | 0.331031 | 7_3:-43224415 | Msa1105090:CDS |
| TTCGCTGTTGAAGGTTCTTT+TGG | 0.335129 | 7_3:-43226550 | Msa1105090:CDS |
| CTTCGCTAGGACCACACATT+TGG | 0.344236 | 7_3:-43224085 | Msa1105090:exon |
| TTTCTGGAGAGCAAGGGTTT+TGG | 0.359471 | 7_3:+43226762 | None:intergenic |
| TTTAGATTTAGTTAAATGTA+AGG | 0.380309 | 7_3:-43223911 | Msa1105090:three_prime_UTR |
| GATGGTGATTTCGCTGTTGA+AGG | 0.380464 | 7_3:-43226559 | Msa1105090:CDS |
| AGATCATCTTGTTCAGCATA+AGG | 0.381806 | 7_3:-43223991 | Msa1105090:three_prime_UTR |
| TTCTTCTCTTTCAATTCAAT+GGG | 0.387580 | 7_3:-43226880 | Msa1105090:exon |
| ATGATCTCAAGCGATCTAAA+TGG | 0.402725 | 7_3:+43224007 | None:intergenic |
| TTCTAGGCTTCGTGAATGTT+CGG | 0.405692 | 7_3:-43226629 | Msa1105090:CDS |
| GAAAATTTCGCAGAGATTGA+TGG | 0.418505 | 7_3:-43226526 | Msa1105090:CDS |
| CCTTACGGAGGCGGCGGCTA+CGG | 0.433971 | 7_3:+43226698 | None:intergenic |
| CGCAAGGACACTGCTCCCGC+TGG | 0.440238 | 7_3:-43226655 | Msa1105090:CDS |
| GATCATCTTGTTCAGCATAA+GGG | 0.440436 | 7_3:-43223990 | Msa1105090:three_prime_UTR |
| GGAGGCGGCGGCTACGGAGC+TGG | 0.441102 | 7_3:+43226704 | None:intergenic |
| GTGTGGTCCTAGCGAAGTAC+AGG | 0.443797 | 7_3:+43224091 | None:intergenic |
| CTCTCCCGGGACGGTACGAA+TGG | 0.447818 | 7_3:-43224117 | Msa1105090:CDS |
| ACGCCACCGCCGTTGGTGTC+CGG | 0.450584 | 7_3:-43226792 | Msa1105090:CDS |
| TTTAGTTAAATGTAAGGGTA+GGG | 0.453277 | 7_3:-43223905 | Msa1105090:three_prime_UTR |
| CGATGTCGCCGCCGTAATCA+TGG | 0.456695 | 7_3:-43226827 | Msa1105090:CDS |
| GCATATGTTCTTGAATAATG+AGG | 0.460305 | 7_3:+43224342 | None:intergenic |
| TTGCGAGGTGGAAGCGGCGG+AGG | 0.461128 | 7_3:+43226673 | None:intergenic |
| CAGAGATTGATGGTAGAGAT+AGG | 0.461294 | 7_3:-43226516 | Msa1105090:intron |
| TCATCCACTTCACAAGTTGT+TGG | 0.465287 | 7_3:+43224308 | None:intergenic |
| ATTTAGTTAAATGTAAGGGT+AGG | 0.481017 | 7_3:-43223906 | Msa1105090:three_prime_UTR |
| CCGTAGCCGCCGCCTCCGTA+AGG | 0.481312 | 7_3:-43226698 | Msa1105090:CDS |
| GCGGAGGAACCTTACGGAGG+CGG | 0.492682 | 7_3:+43226689 | None:intergenic |
| TTGTTGCTGCTTCTCTGCCA+AGG | 0.495579 | 7_3:+43224277 | None:intergenic |
| AGACGGTGATTCCATGATTA+CGG | 0.496172 | 7_3:+43226816 | None:intergenic |
| GTGTCCTTGCGAGGTGGAAG+CGG | 0.498314 | 7_3:+43226667 | None:intergenic |
| TTGTCTTGTGGTTGAACCAG+GGG | 0.501803 | 7_3:+43224373 | None:intergenic |
| GAAGAGGAATCAGAGTGATT+CGG | 0.505537 | 7_3:+43226733 | None:intergenic |
| TCAAGTGTCATTCATACCCC+TGG | 0.505727 | 7_3:-43224389 | Msa1105090:CDS |
| CTTGTTCAGCATAAGGGAAA+GGG | 0.506461 | 7_3:-43223984 | Msa1105090:three_prime_UTR |
| TACTCCAACAACTTGTGAAG+TGG | 0.508794 | 7_3:-43224312 | Msa1105090:CDS |
| CACACCTTGTAGTTTAATCA+GGG | 0.509444 | 7_3:-43224414 | Msa1105090:CDS |
| GCGGCTACGGAGCTGGAGGA+AGG | 0.510998 | 7_3:+43226711 | None:intergenic |
| GAGGAACCTTACGGAGGCGG+CGG | 0.520521 | 7_3:+43226692 | None:intergenic |
| AGTGAATGATGTACCTCTCC+CGG | 0.521585 | 7_3:-43224131 | Msa1105090:CDS |
| GAAGCGGCGGAGGAACCTTA+CGG | 0.521844 | 7_3:+43226683 | None:intergenic |
| CTTGTGTTAATAATTTCGTA+AGG | 0.527511 | 7_3:-43223832 | Msa1105090:three_prime_UTR |
| TGTCCGGACACCAACGGCGG+TGG | 0.528628 | 7_3:+43226789 | None:intergenic |
| TCTTGTTCAGCATAAGGGAA+AGG | 0.534519 | 7_3:-43223985 | Msa1105090:three_prime_UTR |
| TCTCCCGGGACGGTACGAAT+GGG | 0.537700 | 7_3:-43224116 | Msa1105090:CDS |
| GCGGAGATTTCTGGAGAGCA+AGG | 0.540908 | 7_3:+43226755 | None:intergenic |
| CGGAGATTTCTGGAGAGCAA+GGG | 0.542546 | 7_3:+43226756 | None:intergenic |
| TCCGCCGCTTCCACCTCGCA+AGG | 0.544264 | 7_3:-43226671 | Msa1105090:CDS |
| TTTGTCTTGTGGTTGAACCA+GGG | 0.547862 | 7_3:+43224372 | None:intergenic |
| GATTACGGCGGCGACATCGC+CGG | 0.550115 | 7_3:+43226831 | None:intergenic |
| GGACCCATTCGTACCGTCCC+GGG | 0.554867 | 7_3:+43224113 | None:intergenic |
| ACGGAGCTGGAGGAAGGAAG+AGG | 0.555343 | 7_3:+43226717 | None:intergenic |
| AGTGGATGAATTCTTTGCCT+TGG | 0.559071 | 7_3:-43224294 | Msa1105090:CDS |
| AGTTAAATGTAAGGGTAGGG+AGG | 0.559316 | 7_3:-43223902 | Msa1105090:three_prime_UTR |
| GGCACGTGTCCGGACACCAA+CGG | 0.561914 | 7_3:+43226783 | None:intergenic |
| GGGACCCATTCGTACCGTCC+CGG | 0.563099 | 7_3:+43224112 | None:intergenic |
| GGCGGCGGCTACGGAGCTGG+AGG | 0.568674 | 7_3:+43226707 | None:intergenic |
| GTTAAATGTAAGGGTAGGGA+GGG | 0.570306 | 7_3:-43223901 | Msa1105090:three_prime_UTR |
| TCCTTGCGAGGTGGAAGCGG+CGG | 0.577776 | 7_3:+43226670 | None:intergenic |
| CCGTCTCACGCCACCGCCGT+TGG | 0.581243 | 7_3:-43226799 | Msa1105090:CDS |
| TGTTGTTAACAGAAGCACTA+GGG | 0.587116 | 7_3:-43224441 | Msa1105090:intron |
| TTAGATTTAGTTAAATGTAA+GGG | 0.589921 | 7_3:-43223910 | Msa1105090:three_prime_UTR |
| CATTCGTACCGTCCCGGGAG+AGG | 0.591534 | 7_3:+43224118 | None:intergenic |
| GCGGGAGCAGTGTCCTTGCG+AGG | 0.596563 | 7_3:+43226658 | None:intergenic |
| TTGTTGTTAACAGAAGCACT+AGG | 0.602762 | 7_3:-43224442 | Msa1105090:intron |
| GTGAATGATGTACCTCTCCC+GGG | 0.603400 | 7_3:-43224130 | Msa1105090:CDS |
| CCAACGGCGGTGGCGTGAGA+CGG | 0.605873 | 7_3:+43226799 | None:intergenic |
| ATTCAATGGGTAAATACATG+AGG | 0.605964 | 7_3:-43226867 | Msa1105090:exon |
| GAGGTTCGTCCTTTGTCTTG+TGG | 0.610884 | 7_3:+43224361 | None:intergenic |
| CGAAGCCTAGAATTTCCAGC+GGG | 0.617116 | 7_3:+43226640 | None:intergenic |
| TACGGCGGCGACATCGCCGG+TGG | 0.623097 | 7_3:+43226834 | None:intergenic |
| ATGAGGAAATCCAAAACCAC+CGG | 0.623986 | 7_3:-43226850 | Msa1105090:CDS |
| ACGAAGCCTAGAATTTCCAG+CGG | 0.625494 | 7_3:+43226639 | None:intergenic |
| GGAGCAGTGTCCTTGCGAGG+TGG | 0.641921 | 7_3:+43226661 | None:intergenic |
| CTGGTTCAACCACAAGACAA+AGG | 0.647709 | 7_3:-43224370 | Msa1105090:CDS |
| GAGGAATCAGAGTGATTCGG+CGG | 0.652108 | 7_3:+43226736 | None:intergenic |
| GAATCCCTGATTAAACTACA+AGG | 0.654583 | 7_3:+43224410 | None:intergenic |
| TGTGGTCCTAGCGAAGTACA+GGG | 0.663062 | 7_3:+43224092 | None:intergenic |
| GCGGCGGAGGAACCTTACGG+AGG | 0.674543 | 7_3:+43226686 | None:intergenic |
| CTGCTTGAAATCCAAATGTG+TGG | 0.683888 | 7_3:+43224074 | None:intergenic |
| TTATTAACACAAGTTAACAA+CGG | 0.694168 | 7_3:+43223842 | None:intergenic |
| ACGTGTCCGGACACCAACGG+CGG | 0.703244 | 7_3:+43226786 | None:intergenic |
| GATGAGAATGAGAATCGCGA+TGG | 0.711593 | 7_3:-43226577 | Msa1105090:CDS |
| CGGTGATTCCATGATTACGG+CGG | 0.758790 | 7_3:+43226819 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAACAATTTTTCAAATAAT+AGG | - | chr7_3:43224563-43224582 | Msa1105090:intron | 10.0% |
| !!! | TAACAATTTTTCAAATAATA+GGG | - | chr7_3:43224564-43224583 | Msa1105090:intron | 10.0% |
| !!! | TTTTTATTTTTTTTATTGTG+TGG | - | chr7_3:43224800-43224819 | Msa1105090:intron | 10.0% |
| !!! | TTTTTTAGAAATAACACAAA+GGG | + | chr7_3:43224300-43224319 | None:intergenic | 15.0% |
| !!! | ATTTTTTAGAAATAACACAA+AGG | + | chr7_3:43224301-43224320 | None:intergenic | 15.0% |
| !! | AAATTAGTGAGAAAATAAAA+TGG | + | chr7_3:43226116-43226135 | None:intergenic | 15.0% |
| !! | TAGGAAAAAATTAAAAGTAA+TGG | + | chr7_3:43226215-43226234 | None:intergenic | 15.0% |
| !! | CAAAAAAATTACCATTAAAA+TGG | + | chr7_3:43226261-43226280 | None:intergenic | 15.0% |
| !! | TTTAGATTTAGTTAAATGTA+AGG | - | chr7_3:43226809-43226828 | Msa1105090:CDS | 15.0% |
| !! | TTAGATTTAGTTAAATGTAA+GGG | - | chr7_3:43226810-43226829 | Msa1105090:CDS | 15.0% |
| !!! | GTATAATTACTCTTCAATTT+TGG | - | chr7_3:43224226-43224245 | Msa1105090:intron | 20.0% |
| !!! | TTTTTAGAAATAACACAAAG+GGG | + | chr7_3:43224299-43224318 | None:intergenic | 20.0% |
| !!! | TGGTTTTTAGAATTTTCATT+TGG | - | chr7_3:43224376-43224395 | Msa1105090:CDS | 20.0% |
| !!! | ATGTTTCTATTTTTGTATGA+AGG | - | chr7_3:43224407-43224426 | Msa1105090:CDS | 20.0% |
| !! | AAACATTAAACGAAAATCTA+GGG | + | chr7_3:43224833-43224852 | None:intergenic | 20.0% |
| !! | AAAACATTAAACGAAAATCT+AGG | + | chr7_3:43224834-43224853 | None:intergenic | 20.0% |
| !!! | GAAATTATTTTCCATTTTGT+TGG | + | chr7_3:43225205-43225224 | None:intergenic | 20.0% |
| !! | ACAAAATGGAAAATAATTTC+TGG | - | chr7_3:43225205-43225224 | Msa1105090:intron | 20.0% |
| !! | CAAAATGGAAAATAATTTCT+GGG | - | chr7_3:43225206-43225225 | Msa1105090:intron | 20.0% |
| !! | CAGAATCTTAAAATACAAAA+TGG | + | chr7_3:43225482-43225501 | None:intergenic | 20.0% |
| !!! | GACAAATCATATTTTATGTT+AGG | + | chr7_3:43225675-43225694 | None:intergenic | 20.0% |
| !! | AAGCAACAAAAAAAAATACA+AGG | + | chr7_3:43225985-43226004 | None:intergenic | 20.0% |
| !! | TATGTATTCATCTTAATCTT+TGG | - | chr7_3:43226484-43226503 | Msa1105090:intron | 20.0% |
| !! | GCATATTAATATTAACAATC+AGG | + | chr7_3:43226518-43226537 | None:intergenic | 20.0% |
| !! | ATATAAACAACATAACACAT+TGG | + | chr7_3:43226547-43226566 | None:intergenic | 20.0% |
| !!! | TTATGTTGTTTATATTTTGC+AGG | - | chr7_3:43226552-43226571 | Msa1105090:CDS | 20.0% |
| !! | TTATTAACACAAGTTAACAA+CGG | + | chr7_3:43226881-43226900 | None:intergenic | 20.0% |
| ! | TTTCTTCTCTTTCAATTCAA+TGG | - | chr7_3:43223839-43223858 | Msa1105090:three_prime_UTR | 25.0% |
| ! | TTCTTCTCTTTCAATTCAAT+GGG | - | chr7_3:43223840-43223859 | Msa1105090:three_prime_UTR | 25.0% |
| ! | AAAAAGCTGAAGAAGTAAAA+AGG | + | chr7_3:43224658-43224677 | None:intergenic | 25.0% |
| !! | TTTAACTTTCATGTGATTGT+TGG | - | chr7_3:43224852-43224871 | Msa1105090:intron | 25.0% |
| !!! | GTAAAGTTTTGTTAGTACAA+AGG | - | chr7_3:43224885-43224904 | Msa1105090:intron | 25.0% |
| ! | TGATTACATAACCAACAAAA+TGG | - | chr7_3:43225191-43225210 | Msa1105090:intron | 25.0% |
| ! | CTACTCTTAAAGTAGTTATT+GGG | - | chr7_3:43225258-43225277 | Msa1105090:intron | 25.0% |
| ! | TACTCTTAAAGTAGTTATTG+GGG | - | chr7_3:43225259-43225278 | Msa1105090:intron | 25.0% |
| ! | AATGAGTGGAAATTACAAAA+TGG | + | chr7_3:43225359-43225378 | None:intergenic | 25.0% |
| !!! | ATTCTTTCCTCTAAAATAAC+AGG | + | chr7_3:43225393-43225412 | None:intergenic | 25.0% |
| ! | ATCAATTTAGAAAGTGAACT+TGG | + | chr7_3:43225648-43225667 | None:intergenic | 25.0% |
| ! | TAAAACCAGTTAATGAAGAT+TGG | + | chr7_3:43225697-43225716 | None:intergenic | 25.0% |
| ! | AAAAAATACAAGGAAAGAGA+TGG | + | chr7_3:43225975-43225994 | None:intergenic | 25.0% |
| ! | GAAAAGTAATTGGCATTTAT+TGG | + | chr7_3:43226033-43226052 | None:intergenic | 25.0% |
| !! | CACTCAAAAACTTTTCAAAT+TGG | + | chr7_3:43226081-43226100 | None:intergenic | 25.0% |
| ! | ATTTAGTTAAATGTAAGGGT+AGG | - | chr7_3:43226814-43226833 | Msa1105090:CDS | 25.0% |
| ! | TTTAGTTAAATGTAAGGGTA+GGG | - | chr7_3:43226815-43226834 | Msa1105090:CDS | 25.0% |
| ! | CTTGTGTTAATAATTTCGTA+AGG | - | chr7_3:43226888-43226907 | Msa1105090:five_prime_UTR | 25.0% |
| ! | AGAGAAAGATACGAGTTTTT+GGG | + | chr7_3:43223795-43223814 | None:intergenic | 30.0% |
| AGAAAAATTGAGAAGAGAAG+CGG | + | chr7_3:43223824-43223843 | None:intergenic | 30.0% | |
| ATTCAATGGGTAAATACATG+AGG | - | chr7_3:43223853-43223872 | Msa1105090:three_prime_UTR | 30.0% | |
| TGAATGTTCGGATGAAAAAT+TGG | - | chr7_3:43224103-43224122 | Msa1105090:CDS | 30.0% | |
| GAATGTTCGGATGAAAAATT+GGG | - | chr7_3:43224104-43224123 | Msa1105090:CDS | 30.0% | |
| !! | GTTGCATATTAGTGTTGATT+TGG | - | chr7_3:43224356-43224375 | Msa1105090:CDS | 30.0% |
| TGAAATTCATAGCAGAGAAT+AGG | - | chr7_3:43224434-43224453 | Msa1105090:intron | 30.0% | |
| GAAATTCATAGCAGAGAATA+GGG | - | chr7_3:43224435-43224454 | Msa1105090:intron | 30.0% | |
| CTTTCATTTCATGTGATTGT+TGG | - | chr7_3:43224736-43224755 | Msa1105090:intron | 30.0% | |
| !!! | GTATTTTTTATCTGCTGCAT+TGG | - | chr7_3:43225002-43225021 | Msa1105090:intron | 30.0% |
| CTTCTTACATTAATGAGTTG+TGG | - | chr7_3:43225115-43225134 | Msa1105090:intron | 30.0% | |
| ! | CCAATAACTACTTTAAGAGT+AGG | + | chr7_3:43225260-43225279 | None:intergenic | 30.0% |
| CCTACTCTTAAAGTAGTTAT+TGG | - | chr7_3:43225257-43225276 | Msa1105090:intron | 30.0% | |
| ACTCTTAAAGTAGTTATTGG+GGG | - | chr7_3:43225260-43225279 | Msa1105090:intron | 30.0% | |
| CAAAAACGACTCAATTAAGA+TGG | + | chr7_3:43225333-43225352 | None:intergenic | 30.0% | |
| !!! | TCTTAATTGAGTCGTTTTTG+AGG | - | chr7_3:43225333-43225352 | Msa1105090:intron | 30.0% |
| !!! | TTTTCCACCTGTTATTTTAG+AGG | - | chr7_3:43225383-43225402 | Msa1105090:intron | 30.0% |
| ATCGAGTGGAAATTACAAAA+TGG | - | chr7_3:43225411-43225430 | Msa1105090:intron | 30.0% | |
| AAATGGCAAATTTCCACAAT+TGG | - | chr7_3:43225428-43225447 | Msa1105090:intron | 30.0% | |
| AGTTAATATGTGACCAATTG+TGG | + | chr7_3:43225444-43225463 | None:intergenic | 30.0% | |
| ACAACTCAAGATTTATTTCG+AGG | + | chr7_3:43225509-43225528 | None:intergenic | 30.0% | |
| TCCCAGATGAATATTAAACA+GGG | + | chr7_3:43225552-43225571 | None:intergenic | 30.0% | |
| ATCCCAGATGAATATTAAAC+AGG | + | chr7_3:43225553-43225572 | None:intergenic | 30.0% | |
| TTTGTCCAATCTTCATTAAC+TGG | - | chr7_3:43225689-43225708 | Msa1105090:intron | 30.0% | |
| ! | GAAATCTGAAACACATCAAA+CGG | + | chr7_3:43225919-43225938 | None:intergenic | 30.0% |
| ATGTGTTTCAGATTTCTGTT+TGG | - | chr7_3:43225923-43225942 | Msa1105090:intron | 30.0% | |
| GTCATAGAAAATGCAAATGT+TGG | + | chr7_3:43226190-43226209 | None:intergenic | 30.0% | |
| GCAAAGGAATCTAATAGAAT+AGG | + | chr7_3:43226234-43226253 | None:intergenic | 30.0% | |
| GCATATGTTCTTGAATAATG+AGG | + | chr7_3:43226381-43226400 | None:intergenic | 30.0% | |
| !! | AGAAAGATACGAGTTTTTGG+GGG | + | chr7_3:43223793-43223812 | None:intergenic | 35.0% |
| ! | GAGAAAGATACGAGTTTTTG+GGG | + | chr7_3:43223794-43223813 | None:intergenic | 35.0% |
| ! | GAGAGAAAGATACGAGTTTT+TGG | + | chr7_3:43223796-43223815 | None:intergenic | 35.0% |
| GAAAAATTGAGAAGAGAAGC+GGG | + | chr7_3:43223823-43223842 | None:intergenic | 35.0% | |
| GAAAATTTCGCAGAGATTGA+TGG | - | chr7_3:43224194-43224213 | Msa1105090:intron | 35.0% | |
| ! | TAACTTCTGTGACTTGTGAT+AGG | - | chr7_3:43224922-43224941 | Msa1105090:intron | 35.0% |
| AGGTGGAAAAACAAAATGAG+TGG | + | chr7_3:43225373-43225392 | None:intergenic | 35.0% | |
| !! | CTTTCCTCTAAAATAACAGG+TGG | + | chr7_3:43225390-43225409 | None:intergenic | 35.0% |
| !! | TTTTAGAGGAAAGAATCGAG+TGG | - | chr7_3:43225397-43225416 | Msa1105090:intron | 35.0% |
| ATATTAAACAGGGGCAATCA+AGG | + | chr7_3:43225542-43225561 | None:intergenic | 35.0% | |
| CCCAGATGAATATTAAACAG+GGG | + | chr7_3:43225551-43225570 | None:intergenic | 35.0% | |
| CCCCTGTTTAATATTCATCT+GGG | - | chr7_3:43225548-43225567 | Msa1105090:intron | 35.0% | |
| GCGTCAAATCTTTCATTCAA+TGG | + | chr7_3:43225624-43225643 | None:intergenic | 35.0% | |
| AGGTGTGTCATATACTTACA+TGG | - | chr7_3:43225883-43225902 | Msa1105090:intron | 35.0% | |
| GGTGTGTCATATACTTACAT+GGG | - | chr7_3:43225884-43225903 | Msa1105090:intron | 35.0% | |
| GTGTGTCATATACTTACATG+GGG | - | chr7_3:43225885-43225904 | Msa1105090:intron | 35.0% | |
| AAACACATCAAACGGCAAAT+AGG | + | chr7_3:43225911-43225930 | None:intergenic | 35.0% | |
| TGCAGTGAATGAGAAAGATA+TGG | - | chr7_3:43225949-43225968 | Msa1105090:intron | 35.0% | |
| TCCTACGCTAGAAAAGTAAT+TGG | + | chr7_3:43226043-43226062 | None:intergenic | 35.0% | |
| CCATTAAAATGGCTAAGCAA+AGG | + | chr7_3:43226250-43226269 | None:intergenic | 35.0% | |
| !! | CCTTTGCTTAGCCATTTTAA+TGG | - | chr7_3:43226247-43226266 | Msa1105090:intron | 35.0% |
| !! | TTGTTGTTAACAGAAGCACT+AGG | - | chr7_3:43226278-43226297 | Msa1105090:intron | 35.0% |
| !! | TGTTGTTAACAGAAGCACTA+GGG | - | chr7_3:43226279-43226298 | Msa1105090:intron | 35.0% |
| CACACCTTGTAGTTTAATCA+GGG | - | chr7_3:43226306-43226325 | Msa1105090:intron | 35.0% | |
| GAATCCCTGATTAAACTACA+AGG | + | chr7_3:43226313-43226332 | None:intergenic | 35.0% | |
| GCAGCAACAAGCATTATTTA+TGG | - | chr7_3:43226456-43226475 | Msa1105090:intron | 35.0% | |
| ATGATCTCAAGCGATCTAAA+TGG | + | chr7_3:43226716-43226735 | None:intergenic | 35.0% | |
| AGATCATCTTGTTCAGCATA+AGG | - | chr7_3:43226729-43226748 | Msa1105090:CDS | 35.0% | |
| GATCATCTTGTTCAGCATAA+GGG | - | chr7_3:43226730-43226749 | Msa1105090:CDS | 35.0% | |
| ATGAGGAAATCCAAAACCAC+CGG | - | chr7_3:43223870-43223889 | Msa1105090:three_prime_UTR | 40.0% | |
| AGACGGTGATTCCATGATTA+CGG | + | chr7_3:43223907-43223926 | None:intergenic | 40.0% | |
| GAAGAGGAATCAGAGTGATT+CGG | + | chr7_3:43223990-43224009 | None:intergenic | 40.0% | |
| TTCTAGGCTTCGTGAATGTT+CGG | - | chr7_3:43224091-43224110 | Msa1105090:exon | 40.0% | |
| ! | TTCGCTGTTGAAGGTTCTTT+TGG | - | chr7_3:43224170-43224189 | Msa1105090:intron | 40.0% |
| ! | CAGAGATTGATGGTAGAGAT+AGG | - | chr7_3:43224204-43224223 | Msa1105090:intron | 40.0% |
| TGTGGTACCAATAATGCAGA+AGG | - | chr7_3:43225133-43225152 | Msa1105090:intron | 40.0% | |
| GTGGTACCAATAATGCAGAA+GGG | - | chr7_3:43225134-43225153 | Msa1105090:intron | 40.0% | |
| TCAACACCCTTCTGCATTAT+TGG | + | chr7_3:43225143-43225162 | None:intergenic | 40.0% | |
| GCCCCTGTTTAATATTCATC+TGG | - | chr7_3:43225547-43225566 | Msa1105090:intron | 40.0% | |
| !! | ATTCATCTGGGATTTTCTGC+TGG | - | chr7_3:43225560-43225579 | Msa1105090:intron | 40.0% |
| CATTCACTTGTCGAGTAAGT+TGG | - | chr7_3:43225596-43225615 | Msa1105090:intron | 40.0% | |
| TAGAGCATGAGCGAAATTTC+TGG | - | chr7_3:43225771-43225790 | Msa1105090:intron | 40.0% | |
| GGCTGCTGGTATTACTATTA+TGG | + | chr7_3:43225837-43225856 | None:intergenic | 40.0% | |
| AACACGACACATGAGAGTTA+TGG | + | chr7_3:43225858-43225877 | None:intergenic | 40.0% | |
| ATAACTCTCATGTGTCGTGT+TGG | - | chr7_3:43225857-43225876 | Msa1105090:intron | 40.0% | |
| !! | GCCAATTACTTTTCTAGCGT+AGG | - | chr7_3:43226039-43226058 | Msa1105090:intron | 40.0% |
| CAACAGTTATCATGCAGTTC+TGG | - | chr7_3:43226142-43226161 | Msa1105090:intron | 40.0% | |
| GCACACCTTGTAGTTTAATC+AGG | - | chr7_3:43226305-43226324 | Msa1105090:intron | 40.0% | |
| TTTGTCTTGTGGTTGAACCA+GGG | + | chr7_3:43226351-43226370 | None:intergenic | 40.0% | |
| TACTCCAACAACTTGTGAAG+TGG | - | chr7_3:43226408-43226427 | Msa1105090:intron | 40.0% | |
| TCATCCACTTCACAAGTTGT+TGG | + | chr7_3:43226415-43226434 | None:intergenic | 40.0% | |
| AGTGGATGAATTCTTTGCCT+TGG | - | chr7_3:43226426-43226445 | Msa1105090:intron | 40.0% | |
| CTGCTTGAAATCCAAATGTG+TGG | + | chr7_3:43226649-43226668 | None:intergenic | 40.0% | |
| TCTTGTTCAGCATAAGGGAA+AGG | - | chr7_3:43226735-43226754 | Msa1105090:CDS | 40.0% | |
| CTTGTTCAGCATAAGGGAAA+GGG | - | chr7_3:43226736-43226755 | Msa1105090:CDS | 40.0% | |
| AGTTAAATGTAAGGGTAGGG+AGG | - | chr7_3:43226818-43226837 | Msa1105090:CDS | 40.0% | |
| GTTAAATGTAAGGGTAGGGA+GGG | - | chr7_3:43226819-43226838 | Msa1105090:CDS | 40.0% | |
| !! | TTTCTGGAGAGCAAGGGTTT+TGG | + | chr7_3:43223961-43223980 | None:intergenic | 45.0% |
| ACGAAGCCTAGAATTTCCAG+CGG | + | chr7_3:43224084-43224103 | None:intergenic | 45.0% | |
| GATGAGAATGAGAATCGCGA+TGG | - | chr7_3:43224143-43224162 | Msa1105090:CDS | 45.0% | |
| GATGGTGATTTCGCTGTTGA+AGG | - | chr7_3:43224161-43224180 | Msa1105090:intron | 45.0% | |
| !! | TGTGATTGTTGGTAGCACTG+AGG | - | chr7_3:43224863-43224882 | Msa1105090:intron | 45.0% |
| !! | ATCTGGGATTTTCTGCTGGT+AGG | - | chr7_3:43225564-43225583 | Msa1105090:intron | 45.0% |
| !! | TCTGGGATTTTCTGCTGGTA+GGG | - | chr7_3:43225565-43225584 | Msa1105090:intron | 45.0% |
| ! | TCAAGTGTCATTCATACCCC+TGG | - | chr7_3:43226331-43226350 | Msa1105090:intron | 45.0% |
| TTGTCTTGTGGTTGAACCAG+GGG | + | chr7_3:43226350-43226369 | None:intergenic | 45.0% | |
| CTTTGTCTTGTGGTTGAACC+AGG | + | chr7_3:43226352-43226371 | None:intergenic | 45.0% | |
| CTGGTTCAACCACAAGACAA+AGG | - | chr7_3:43226350-43226369 | Msa1105090:intron | 45.0% | |
| AGTGAATGATGTACCTCTCC+CGG | - | chr7_3:43226589-43226608 | Msa1105090:CDS | 45.0% | |
| !!! | ATATAAAAATTGTTTTTTAA+TGG | + | chr7_3:43224614-43224633 | None:intergenic | 5.0% |
| !!! | ATTAAAAAACAATTTTTATA+TGG | - | chr7_3:43224613-43224632 | Msa1105090:intron | 5.0% |
| CGGTGATTCCATGATTACGG+CGG | + | chr7_3:43223904-43223923 | None:intergenic | 50.0% | |
| ! | CGGAGATTTCTGGAGAGCAA+GGG | + | chr7_3:43223967-43223986 | None:intergenic | 50.0% |
| ! | AGTGATTCGGCGGAGATTTC+TGG | + | chr7_3:43223977-43223996 | None:intergenic | 50.0% |
| ! | GAGGAATCAGAGTGATTCGG+CGG | + | chr7_3:43223987-43224006 | None:intergenic | 50.0% |
| CGAAGCCTAGAATTTCCAGC+GGG | + | chr7_3:43224083-43224102 | None:intergenic | 50.0% | |
| CACATGAGAGTTATGGCTGC+TGG | + | chr7_3:43225851-43225870 | None:intergenic | 50.0% | |
| ! | CTCATGTGTCGTGTTGGCAA+AGG | - | chr7_3:43225863-43225882 | Msa1105090:intron | 50.0% |
| GAGGTTCGTCCTTTGTCTTG+TGG | + | chr7_3:43226362-43226381 | None:intergenic | 50.0% | |
| ! | TTGTTGCTGCTTCTCTGCCA+AGG | + | chr7_3:43226446-43226465 | None:intergenic | 50.0% |
| GTGAATGATGTACCTCTCCC+GGG | - | chr7_3:43226590-43226609 | Msa1105090:CDS | 50.0% | |
| TGTGGTCCTAGCGAAGTACA+GGG | + | chr7_3:43226631-43226650 | None:intergenic | 50.0% | |
| CTTCGCTAGGACCACACATT+TGG | - | chr7_3:43226635-43226654 | Msa1105090:CDS | 50.0% | |
| ! | GTAAGGGTAGGGAGGGTATA+TGG | - | chr7_3:43226826-43226845 | Msa1105090:CDS | 50.0% |
| !! | CAAGGGTTTTGGCACGTGTC+CGG | + | chr7_3:43223950-43223969 | None:intergenic | 55.0% |
| ! | GCGGAGATTTCTGGAGAGCA+AGG | + | chr7_3:43223968-43223987 | None:intergenic | 55.0% |
| CTGCTCCCGCTGGAAATTCT+AGG | - | chr7_3:43224075-43224094 | Msa1105090:three_prime_UTR | 55.0% | |
| TTGCTTGAGCCCACTGAGTC+AGG | - | chr7_3:43225999-43226018 | Msa1105090:intron | 55.0% | |
| TGCTTGAGCCCACTGAGTCA+GGG | - | chr7_3:43226000-43226019 | Msa1105090:intron | 55.0% | |
| GAGACAAGCCCTGACTCAGT+GGG | + | chr7_3:43226011-43226030 | None:intergenic | 55.0% | |
| ATGATGTACCTCTCCCGGGA+CGG | - | chr7_3:43226594-43226613 | Msa1105090:CDS | 55.0% | |
| ATGGGTCCCTGTACTTCGCT+AGG | - | chr7_3:43226622-43226641 | Msa1105090:CDS | 55.0% | |
| GTGTGGTCCTAGCGAAGTAC+AGG | + | chr7_3:43226632-43226651 | None:intergenic | 55.0% | |
| CGATGTCGCCGCCGTAATCA+TGG | - | chr7_3:43223893-43223912 | Msa1105090:three_prime_UTR | 60.0% | |
| ACGGAGCTGGAGGAAGGAAG+AGG | + | chr7_3:43224006-43224025 | None:intergenic | 60.0% | |
| GAAGCGGCGGAGGAACCTTA+CGG | + | chr7_3:43224040-43224059 | None:intergenic | 60.0% | |
| GTGTCCTTGCGAGGTGGAAG+CGG | + | chr7_3:43224056-43224075 | None:intergenic | 60.0% | |
| GGAGACAAGCCCTGACTCAG+TGG | + | chr7_3:43226012-43226031 | None:intergenic | 60.0% | |
| TCTCCCGGGACGGTACGAAT+GGG | - | chr7_3:43226604-43226623 | Msa1105090:CDS | 60.0% | |
| ! | GGCGACATCGCCGGTGGTTT+TGG | + | chr7_3:43223883-43223902 | None:intergenic | 65.0% |
| GATTACGGCGGCGACATCGC+CGG | + | chr7_3:43223892-43223911 | None:intergenic | 65.0% | |
| ACGTGTCCGGACACCAACGG+CGG | + | chr7_3:43223937-43223956 | None:intergenic | 65.0% | |
| GGCACGTGTCCGGACACCAA+CGG | + | chr7_3:43223940-43223959 | None:intergenic | 65.0% | |
| GAGGAACCTTACGGAGGCGG+CGG | + | chr7_3:43224031-43224050 | None:intergenic | 65.0% | |
| GCGGAGGAACCTTACGGAGG+CGG | + | chr7_3:43224034-43224053 | None:intergenic | 65.0% | |
| TCCTTGCGAGGTGGAAGCGG+CGG | + | chr7_3:43224053-43224072 | None:intergenic | 65.0% | |
| GGAGCAGTGTCCTTGCGAGG+TGG | + | chr7_3:43224062-43224081 | None:intergenic | 65.0% | |
| CATTCGTACCGTCCCGGGAG+AGG | + | chr7_3:43226605-43226624 | None:intergenic | 65.0% | |
| CTCTCCCGGGACGGTACGAA+TGG | - | chr7_3:43226603-43226622 | Msa1105090:CDS | 65.0% | |
| GGACCCATTCGTACCGTCCC+GGG | + | chr7_3:43226610-43226629 | None:intergenic | 65.0% | |
| GGGACCCATTCGTACCGTCC+CGG | + | chr7_3:43226611-43226630 | None:intergenic | 65.0% | |
| CCAACGGCGGTGGCGTGAGA+CGG | + | chr7_3:43223924-43223943 | None:intergenic | 70.0% | |
| ! | ACGCCACCGCCGTTGGTGTC+CGG | - | chr7_3:43223928-43223947 | Msa1105090:three_prime_UTR | 70.0% |
| TGTCCGGACACCAACGGCGG+TGG | + | chr7_3:43223934-43223953 | None:intergenic | 70.0% | |
| GCGGCTACGGAGCTGGAGGA+AGG | + | chr7_3:43224012-43224031 | None:intergenic | 70.0% | |
| CCTTACGGAGGCGGCGGCTA+CGG | + | chr7_3:43224025-43224044 | None:intergenic | 70.0% | |
| GCGGCGGAGGAACCTTACGG+AGG | + | chr7_3:43224037-43224056 | None:intergenic | 70.0% | |
| TTGCGAGGTGGAAGCGGCGG+AGG | + | chr7_3:43224050-43224069 | None:intergenic | 70.0% | |
| TCCGCCGCTTCCACCTCGCA+AGG | - | chr7_3:43224049-43224068 | Msa1105090:three_prime_UTR | 70.0% | |
| GCGGGAGCAGTGTCCTTGCG+AGG | + | chr7_3:43224065-43224084 | None:intergenic | 70.0% | |
| CGCAAGGACACTGCTCCCGC+TGG | - | chr7_3:43224065-43224084 | Msa1105090:three_prime_UTR | 70.0% | |
| TACGGCGGCGACATCGCCGG+TGG | + | chr7_3:43223889-43223908 | None:intergenic | 75.0% | |
| CCGTCTCACGCCACCGCCGT+TGG | - | chr7_3:43223921-43223940 | Msa1105090:three_prime_UTR | 75.0% | |
| CCGTAGCCGCCGCCTCCGTA+AGG | - | chr7_3:43224022-43224041 | Msa1105090:three_prime_UTR | 75.0% | |
| ! | GGCGGCGGCTACGGAGCTGG+AGG | + | chr7_3:43224016-43224035 | None:intergenic | 80.0% |
| ! | GGAGGCGGCGGCTACGGAGC+TGG | + | chr7_3:43224019-43224038 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 43223789 | 43226953 | 43223789 | ID=Msa1105090;Name=Msa1105090 |
| chr7_3 | mRNA | 43223789 | 43226953 | 43223789 | ID=Msa1105090-mRNA-1;Parent=Msa1105090;Name=Msa1105090-mRNA-1;_AED=0.18;_eAED=0.18;_QI=69|1|1|1|1|1|3|310|209 |
| chr7_3 | exon | 43223789 | 43224168 | 43223789 | ID=Msa1105090-mRNA-1:exon:8853;Parent=Msa1105090-mRNA-1 |
| chr7_3 | exon | 43224260 | 43224451 | 43224260 | ID=Msa1105090-mRNA-1:exon:8852;Parent=Msa1105090-mRNA-1 |
| chr7_3 | exon | 43226517 | 43226953 | 43226517 | ID=Msa1105090-mRNA-1:exon:8851;Parent=Msa1105090-mRNA-1 |
| chr7_3 | five_prime_UTR | 43226885 | 43226953 | 43226885 | ID=Msa1105090-mRNA-1:five_prime_utr;Parent=Msa1105090-mRNA-1 |
| chr7_3 | CDS | 43226517 | 43226884 | 43226517 | ID=Msa1105090-mRNA-1:cds;Parent=Msa1105090-mRNA-1 |
| chr7_3 | CDS | 43224260 | 43224451 | 43224260 | ID=Msa1105090-mRNA-1:cds;Parent=Msa1105090-mRNA-1 |
| chr7_3 | CDS | 43224099 | 43224168 | 43224099 | ID=Msa1105090-mRNA-1:cds;Parent=Msa1105090-mRNA-1 |
| chr7_3 | three_prime_UTR | 43223789 | 43224098 | 43223789 | ID=Msa1105090-mRNA-1:three_prime_utr;Parent=Msa1105090-mRNA-1 |
| Gene Sequence |
| Protein sequence |
