Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0561160 | XP_013457305.1 | 97.479 | 238 | 6 | 0 | 1 | 238 | 1 | 238 | 2.23e-170 | 479 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0561160 | sp|O48916|FAH1_ARATH | 63.158 | 228 | 84 | 0 | 1 | 228 | 1 | 228 | 1.03e-107 | 313 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0561160 | B7FND9 | 97.479 | 238 | 6 | 0 | 1 | 238 | 1 | 238 | 1.07e-170 | 479 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0388840 | Msa0561160 | -0.804148 | 2.482290e-49 | -8.615850e-47 |
| Msa0389810 | Msa0561160 | -0.815911 | 7.254507e-52 | -8.615850e-47 |
| Msa0468130 | Msa0561160 | -0.807328 | 5.333706e-50 | -8.615850e-47 |
| Msa0482190 | Msa0561160 | 0.820374 | 7.095856e-53 | -8.615850e-47 |
| Msa0485500 | Msa0561160 | 0.816885 | 4.390580e-52 | -8.615850e-47 |
| Msa0561130 | Msa0561160 | 0.881548 | 2.190350e-70 | -8.615850e-47 |
| Msa0561160 | Msa0615270 | 0.886000 | 5.001627e-72 | -8.615850e-47 |
| Msa0561160 | Msa0698310 | 0.871000 | 9.533951e-67 | -8.615850e-47 |
| Msa0561160 | Msa0944550 | -0.811041 | 8.535782e-51 | -8.615850e-47 |
| Msa0561160 | Msa0982270 | -0.819528 | 1.107532e-52 | -8.615850e-47 |
| Msa0561160 | Msa1054410 | -0.805026 | 1.628236e-49 | -8.615850e-47 |
| Msa0561160 | Msa1258380 | 0.819823 | 9.484457e-53 | -8.615850e-47 |
| Msa0561160 | Msa1307740 | -0.805552 | 1.263607e-49 | -8.615850e-47 |
| Msa0561160 | Msa1444250 | 0.818102 | 2.335724e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0561160 | MtrunA17_Chr4g0051591 | 97.479 | 238 | 6 | 0 | 1 | 238 | 1 | 238 | 2.05e-174 | 479 |
| Msa0561160 | MtrunA17_Chr2g0292941 | 68.776 | 237 | 73 | 1 | 1 | 237 | 1 | 236 | 3.74e-125 | 354 |
| Msa0561160 | MtrunA17_Chr4g0051581 | 80.272 | 147 | 29 | 0 | 1 | 147 | 1 | 147 | 8.51e-76 | 227 |
| Msa0561160 | MtrunA17_Chr4g0051571 | 78.161 | 87 | 19 | 0 | 151 | 237 | 10 | 96 | 2.52e-45 | 146 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0561160 | AT2G34770.1 | 63.158 | 228 | 84 | 0 | 1 | 228 | 1 | 228 | 1.05e-108 | 313 |
| Msa0561160 | AT4G20870.2 | 61.603 | 237 | 90 | 1 | 1 | 237 | 1 | 236 | 6.06e-107 | 308 |
| Msa0561160 | AT4G20870.1 | 61.603 | 237 | 90 | 1 | 1 | 237 | 1 | 236 | 6.06e-107 | 308 |
Find 92 sgRNAs with CRISPR-Local
Find 213 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTGGGTGATTCCAATTATT+TGG | 0.142082 | 4_1:-60634643 | Msa0561160:CDS |
| ATTATATGTAATCTAAATTA+AGG | 0.144857 | 4_1:+60635460 | None:intergenic |
| ATGGGTTCATCAACCTATTA+TGG | 0.183910 | 4_1:-60634918 | Msa0561160:CDS |
| GGGACGACACAGTGGTAAAT+TGG | 0.205841 | 4_1:+60635796 | None:intergenic |
| GCAATTGGAACCCAAATAAT+TGG | 0.230184 | 4_1:+60634632 | None:intergenic |
| TTGGTGAAGATTATGATAAA+TGG | 0.262773 | 4_1:-60634937 | Msa0561160:CDS |
| AAAAGAGGGAGGTGAGGAAC+AGG | 0.286347 | 4_1:+60634572 | None:intergenic |
| GTGTCAAACGTGTTTATTAC+AGG | 0.288300 | 4_1:+60635583 | None:intergenic |
| TCAATTGCTCCTGCTGTGTT+TGG | 0.295260 | 4_1:-60633535 | Msa0561160:CDS |
| GTGGGTGATTCCAATTATTT+GGG | 0.302503 | 4_1:-60634642 | Msa0561160:CDS |
| TTGGCATCACTTCACCACTA+TGG | 0.307245 | 4_1:-60632891 | Msa0561160:CDS |
| GGGCCTTCCTTGCCCATAAT+AGG | 0.340890 | 4_1:+60634905 | None:intergenic |
| ATGTTCAAACTAAGAGCTAT+TGG | 0.342050 | 4_1:-60634487 | Msa0561160:CDS |
| TTTCTTTCGTAGCAGTATCT+TGG | 0.345463 | 4_1:-60634879 | Msa0561160:CDS |
| AGCTATCCATAGGGTGCTTA+TGG | 0.348531 | 4_1:+60634429 | None:intergenic |
| GAATAAACCCCTTGTTTGTC+AGG | 0.349453 | 4_1:-60635194 | Msa0561160:intron |
| TATATTTGAATTCTATTATG+AGG | 0.359179 | 4_1:-60635521 | Msa0561160:five_prime_UTR |
| TGTTCAAACTAAGAGCTATT+GGG | 0.361825 | 4_1:-60634486 | Msa0561160:CDS |
| AATTGTTACTTATCTACGTT+TGG | 0.364138 | 4_1:+60632825 | None:intergenic |
| TGAGTGAGTGGGGTATGTTT+TGG | 0.371283 | 4_1:+60635774 | None:intergenic |
| CATTTATAACTCTTTCAGAT+TGG | 0.376626 | 4_1:-60634600 | Msa0561160:CDS |
| GGACGACACAGTGGTAAATT+GGG | 0.403038 | 4_1:+60635797 | None:intergenic |
| ATTTATAACTCTTTCAGATT+GGG | 0.403789 | 4_1:-60634599 | Msa0561160:CDS |
| TTATATGTAATCTAAATTAA+GGG | 0.409817 | 4_1:+60635461 | None:intergenic |
| AGGGTCCAGAGCCTTGGCTT+TGG | 0.410334 | 4_1:-60632910 | Msa0561160:CDS |
| CACTTCACCACTATGGGATA+AGG | 0.426484 | 4_1:-60632884 | Msa0561160:CDS |
| TGGGTTCATCAACCTATTAT+GGG | 0.432385 | 4_1:-60634917 | Msa0561160:CDS |
| AAAACGGTGCAATAAGTATT+CGG | 0.433689 | 4_1:+60634517 | None:intergenic |
| TGGTGAAGATTATGATAAAT+GGG | 0.434108 | 4_1:-60634936 | Msa0561160:CDS |
| ATTGCTCCTGCTGTGTTTGG+AGG | 0.436809 | 4_1:-60633532 | Msa0561160:CDS |
| ACCATTTGAATCATCACTAC+AGG | 0.439539 | 4_1:-60632930 | Msa0561160:CDS |
| CTTTCGTAGCAGTATCTTGG+AGG | 0.464905 | 4_1:-60634876 | Msa0561160:intron |
| TGATGCCAAAGCCAAGGCTC+TGG | 0.469577 | 4_1:+60632905 | None:intergenic |
| TTTGAACATGGAAAAGAAAA+CGG | 0.472915 | 4_1:+60634501 | None:intergenic |
| CACTACAGGGTCCAGAGCCT+TGG | 0.478105 | 4_1:-60632916 | Msa0561160:CDS |
| TGGCATCACTTCACCACTAT+GGG | 0.480111 | 4_1:-60632890 | Msa0561160:CDS |
| TGTAATCTAAATTAAGGGAT+GGG | 0.487406 | 4_1:+60635466 | None:intergenic |
| ACACATTATTACTTGCATCA+TGG | 0.488209 | 4_1:-60633478 | Msa0561160:CDS |
| CTGTTCCGAACATGATGATC+TGG | 0.488917 | 4_1:+60635715 | None:intergenic |
| ACAAGTCTTAAGCTATCCAT+AGG | 0.497021 | 4_1:+60634419 | None:intergenic |
| TAAATGAAACAAGATGCAAT+TGG | 0.498395 | 4_1:+60634617 | None:intergenic |
| AATATACAAATACAGTATAC+AGG | 0.499179 | 4_1:+60635538 | None:intergenic |
| ATGTGACAGGTTGGTCATCT+TGG | 0.510797 | 4_1:-60634956 | Msa0561160:intron |
| CAACCTATTATGGGCAAGGA+AGG | 0.526322 | 4_1:-60634908 | Msa0561160:CDS |
| TAAGTCTCCCTCTTTGAAAG+AGG | 0.530065 | 4_1:+60635364 | None:intergenic |
| ATGTAATCTAAATTAAGGGA+TGG | 0.531395 | 4_1:+60635465 | None:intergenic |
| AACACAGCAGGAGCAATTGA+AGG | 0.534894 | 4_1:+60633538 | None:intergenic |
| TAGCCTCCCTCTTTCAAAGA+GGG | 0.541468 | 4_1:-60635371 | Msa0561160:five_prime_UTR |
| GGTGCTTATGGTGGCAACCA+TGG | 0.543946 | 4_1:+60634441 | None:intergenic |
| GCTATTAAAGCGGCTCCAGC+TGG | 0.544240 | 4_1:+60634389 | None:intergenic |
| ACATTGCATTATCTTCTCCA+TGG | 0.544817 | 4_1:-60634458 | Msa0561160:CDS |
| ATGCCGAGTAGCACGAAAAG+AGG | 0.548185 | 4_1:+60634557 | None:intergenic |
| TTTCACGCGAACTGCTTGGT+GGG | 0.549072 | 4_1:-60634660 | Msa0561160:CDS |
| GGTTCCTCCTCCATCAAAAG+TGG | 0.554501 | 4_1:-60632851 | Msa0561160:CDS |
| GTAATCTAAATTAAGGGATG+GGG | 0.556083 | 4_1:+60635467 | None:intergenic |
| ATTAAAGCGGCTCCAGCTGG+TGG | 0.557678 | 4_1:+60634392 | None:intergenic |
| AGTTGGTTACCTGACAAACA+AGG | 0.563299 | 4_1:+60635185 | None:intergenic |
| CTTCTCTTCTCAGATCTCCT+CGG | 0.565161 | 4_1:-60635338 | Msa0561160:intron |
| TTGCCACCATAAGCACCCTA+TGG | 0.565998 | 4_1:-60634435 | Msa0561160:CDS |
| AAGTCTCCCTCTTTGAAAGA+GGG | 0.576055 | 4_1:+60635365 | None:intergenic |
| AGCCGCTTTAATAGCCTACA+TGG | 0.576385 | 4_1:-60634381 | Msa0561160:intron |
| GTTCAAACTAAGAGCTATTG+GGG | 0.580121 | 4_1:-60634485 | Msa0561160:CDS |
| ATGAGAAAGATCATTGGCAC+AGG | 0.580902 | 4_1:+60635747 | None:intergenic |
| AGCACGAAAAGAGGGAGGTG+AGG | 0.582858 | 4_1:+60634566 | None:intergenic |
| CCCTGTAGTGATGATTCAAA+TGG | 0.586439 | 4_1:+60632929 | None:intergenic |
| TCATCAACCTATTATGGGCA+AGG | 0.588235 | 4_1:-60634912 | Msa0561160:CDS |
| AATAGCTCTTAGTTTGAACA+TGG | 0.589170 | 4_1:+60634489 | None:intergenic |
| GGCACAGGTAAGTGAGTGAG+TGG | 0.590238 | 4_1:+60635762 | None:intergenic |
| TAGAAAGGGGTATACCATGT+AGG | 0.600427 | 4_1:+60634367 | None:intergenic |
| AAAATGCCTCCAAACACAGC+AGG | 0.605294 | 4_1:+60633526 | None:intergenic |
| CACAGGTAAGTGAGTGAGTG+GGG | 0.605325 | 4_1:+60635764 | None:intergenic |
| GCACAGGTAAGTGAGTGAGT+GGG | 0.606218 | 4_1:+60635763 | None:intergenic |
| TGACACGAAAGGTCGAGAAG+CGG | 0.609671 | 4_1:-60635566 | Msa0561160:five_prime_UTR |
| CAAGTCTTAAGCTATCCATA+GGG | 0.618487 | 4_1:+60634420 | None:intergenic |
| TGCCGAGTAGCACGAAAAGA+GGG | 0.619206 | 4_1:+60634558 | None:intergenic |
| ATAAACACGTTTGACACGAA+AGG | 0.619757 | 4_1:-60635577 | Msa0561160:five_prime_UTR |
| TATCCATAGGGTGCTTATGG+TGG | 0.620677 | 4_1:+60634432 | None:intergenic |
| TTAGCCTCCCTCTTTCAAAG+AGG | 0.624702 | 4_1:-60635372 | Msa0561160:five_prime_UTR |
| GTGAAGTGATGCCAAAGCCA+AGG | 0.625285 | 4_1:+60632899 | None:intergenic |
| ACAGCAGGAGCAATTGAAGG+AGG | 0.629758 | 4_1:+60633541 | None:intergenic |
| GACGACACAGTGGTAAATTG+GGG | 0.630647 | 4_1:+60635798 | None:intergenic |
| CCATTTGAATCATCACTACA+GGG | 0.637039 | 4_1:-60632929 | Msa0561160:CDS |
| AAAGAGGGAGGTGAGGAACA+GGG | 0.637398 | 4_1:+60634573 | None:intergenic |
| GTTGGTTACCTGACAAACAA+GGG | 0.639760 | 4_1:+60635186 | None:intergenic |
| TTGGTTACCTGACAAACAAG+GGG | 0.643258 | 4_1:+60635187 | None:intergenic |
| CAGCAGGAGCAATTGAAGGA+GGG | 0.648334 | 4_1:+60633542 | None:intergenic |
| TCTCCCTCTTTGAAAGAGGG+AGG | 0.658477 | 4_1:+60635368 | None:intergenic |
| TACTGCTACGAAAGAAACGA+GGG | 0.659997 | 4_1:+60634885 | None:intergenic |
| TACCATGTAGGCTATTAAAG+CGG | 0.682242 | 4_1:+60634379 | None:intergenic |
| ATACTGCTACGAAAGAAACG+AGG | 0.685461 | 4_1:+60634884 | None:intergenic |
| CGAGTAGCACGAAAAGAGGG+AGG | 0.696341 | 4_1:+60634561 | None:intergenic |
| AGGGAATACAAGCTTCACTG+AGG | 0.754775 | 4_1:+60633561 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATATGTAATCTAAATTAA+GGG | + | chr4_1:60633152-60633171 | None:intergenic | 10.0% |
| !! | ATTATATGTAATCTAAATTA+AGG | + | chr4_1:60633153-60633172 | None:intergenic | 10.0% |
| !! | TTTATATAAACTCTTTATTA+TGG | - | chr4_1:60634382-60634401 | Msa0561160:CDS | 10.0% |
| !! | AAAAAATAGAAGAAAAAACA+GGG | - | chr4_1:60632999-60633018 | Msa0561160:intron | 15.0% |
| !! | TATATTTGAATTCTATTATG+AGG | - | chr4_1:60633089-60633108 | Msa0561160:intron | 15.0% |
| !! | AGAACAAAAAAAGAAAAATT+AGG | + | chr4_1:60633350-60633369 | None:intergenic | 15.0% |
| !!! | ATAATCAATTTTAATGCATA+TGG | + | chr4_1:60633808-60633827 | None:intergenic | 15.0% |
| !!! | TGCATTAAAATTGATTATTT+TGG | - | chr4_1:60633810-60633829 | Msa0561160:intron | 15.0% |
| !!! | TCAACTATTTTAAAGAAATT+TGG | - | chr4_1:60635442-60635461 | Msa0561160:five_prime_UTR | 15.0% |
| !! | AAAAAAATGAGAAAGATCAT+TGG | + | chr4_1:60632872-60632891 | None:intergenic | 20.0% |
| !! | CAAAAAAAGAAAGAACATTT+GGG | - | chr4_1:60632971-60632990 | Msa0561160:intron | 20.0% |
| !! | AAAAAAAGAAAGAACATTTG+GGG | - | chr4_1:60632972-60632991 | Msa0561160:intron | 20.0% |
| !! | GAAAAAATAGAAGAAAAAAC+AGG | - | chr4_1:60632998-60633017 | Msa0561160:intron | 20.0% |
| !! | AATATACAAATACAGTATAC+AGG | + | chr4_1:60633075-60633094 | None:intergenic | 20.0% |
| !! | AAAAAAAAAGTGAATTGAGT+TGG | + | chr4_1:60633445-60633464 | None:intergenic | 20.0% |
| !! | ATGAAAATTTAATGTAGGTA+GGG | + | chr4_1:60633776-60633795 | None:intergenic | 20.0% |
| !! | GAATGATGAAAATTTAATGT+AGG | + | chr4_1:60633781-60633800 | None:intergenic | 20.0% |
| !! | ATTATTAAGATTTGTGTTGT+TGG | - | chr4_1:60633920-60633939 | Msa0561160:intron | 20.0% |
| !! | ATTTATAACTCTTTCAGATT+GGG | - | chr4_1:60634011-60634030 | Msa0561160:intron | 20.0% |
| !! | ACAAAAGAAAAATGTAGAAA+GGG | + | chr4_1:60634260-60634279 | None:intergenic | 20.0% |
| !! | AACAAAAGAAAAATGTAGAA+AGG | + | chr4_1:60634261-60634280 | None:intergenic | 20.0% |
| !! | AAATCATGCATATAATGAAA+AGG | + | chr4_1:60634298-60634317 | None:intergenic | 20.0% |
| !!! | ATTTCATTGTTTAGTTTTGA+AGG | - | chr4_1:60634527-60634546 | Msa0561160:CDS | 20.0% |
| !! | ATAATATTTGACATACTTGT+AGG | - | chr4_1:60634666-60634685 | Msa0561160:intron | 20.0% |
| !! | TAATATTTGACATACTTGTA+GGG | - | chr4_1:60634667-60634686 | Msa0561160:intron | 20.0% |
| ! | GCAAAAAAAGAAAGAACATT+TGG | - | chr4_1:60632970-60632989 | Msa0561160:intron | 25.0% |
| ! | TGTAATCTAAATTAAGGGAT+GGG | + | chr4_1:60633147-60633166 | None:intergenic | 25.0% |
| ! | ATGTAATCTAAATTAAGGGA+TGG | + | chr4_1:60633148-60633167 | None:intergenic | 25.0% |
| ! | GATGAGATAATTAAAATGTC+TGG | + | chr4_1:60633544-60633563 | None:intergenic | 25.0% |
| ! | TTGGTGAAGATTATGATAAA+TGG | - | chr4_1:60633673-60633692 | Msa0561160:intron | 25.0% |
| ! | TGGTGAAGATTATGATAAAT+GGG | - | chr4_1:60633674-60633693 | Msa0561160:intron | 25.0% |
| ! | GATGAAAATTTAATGTAGGT+AGG | + | chr4_1:60633777-60633796 | None:intergenic | 25.0% |
| ! | TAAATGAAACAAGATGCAAT+TGG | + | chr4_1:60633996-60634015 | None:intergenic | 25.0% |
| ! | CATTTATAACTCTTTCAGAT+TGG | - | chr4_1:60634010-60634029 | Msa0561160:intron | 25.0% |
| ! | TTTGAACATGGAAAAGAAAA+CGG | + | chr4_1:60634112-60634131 | None:intergenic | 25.0% |
| ! | CAAAAGAAAAATGTAGAAAG+GGG | + | chr4_1:60634259-60634278 | None:intergenic | 25.0% |
| ! | TTTCTACTTGAAATGATTAG+AGG | + | chr4_1:60634411-60634430 | None:intergenic | 25.0% |
| !!! | TTTAGTTTTGAAGGAATGAA+CGG | - | chr4_1:60634536-60634555 | Msa0561160:CDS | 25.0% |
| !! | GTATCTAAAACAAACTTCTA+AGG | + | chr4_1:60634576-60634595 | None:intergenic | 25.0% |
| ! | TATACCAATTCAATTGATGT+TGG | - | chr4_1:60634597-60634616 | Msa0561160:CDS | 25.0% |
| !!! | TTAAGTACTTTGAAATCTTG+AGG | - | chr4_1:60634636-60634655 | Msa0561160:CDS | 25.0% |
| ! | AATATTTGACATACTTGTAG+GGG | - | chr4_1:60634668-60634687 | Msa0561160:intron | 25.0% |
| !! | ATTTTGCAAAAGTAACACAT+TGG | + | chr4_1:60635245-60635264 | None:intergenic | 25.0% |
| ! | TGTTGTTACTGAAGAAAATA+AGG | + | chr4_1:60635469-60635488 | None:intergenic | 25.0% |
| !! | AATTGTTACTTATCTACGTT+TGG | + | chr4_1:60635788-60635807 | None:intergenic | 25.0% |
| ! | TTTTTCCAGATCATCATGTT+CGG | - | chr4_1:60632890-60632909 | Msa0561160:CDS | 30.0% |
| TGAAGAGACTATACAAAAAG+AGG | - | chr4_1:60632939-60632958 | Msa0561160:intron | 30.0% | |
| !! | TTGTCTTTTTGTTTAACGTG+TGG | - | chr4_1:60633112-60633131 | Msa0561160:intron | 30.0% |
| GTAATCTAAATTAAGGGATG+GGG | + | chr4_1:60633146-60633165 | None:intergenic | 30.0% | |
| AAGTAAATTCTTACGTACTC+TGG | + | chr4_1:60633608-60633627 | None:intergenic | 30.0% | |
| AATTTAATGTAGGTAGGGTA+GGG | + | chr4_1:60633771-60633790 | None:intergenic | 30.0% | |
| AAATTTAATGTAGGTAGGGT+AGG | + | chr4_1:60633772-60633791 | None:intergenic | 30.0% | |
| AAAACGGTGCAATAAGTATT+CGG | + | chr4_1:60634096-60634115 | None:intergenic | 30.0% | |
| ! | AATAGCTCTTAGTTTGAACA+TGG | + | chr4_1:60634124-60634143 | None:intergenic | 30.0% |
| ATGTTCAAACTAAGAGCTAT+TGG | - | chr4_1:60634123-60634142 | Msa0561160:intron | 30.0% | |
| TGTTCAAACTAAGAGCTATT+GGG | - | chr4_1:60634124-60634143 | Msa0561160:intron | 30.0% | |
| TATGTCACAGTTATCTTTAG+AGG | + | chr4_1:60634326-60634345 | None:intergenic | 30.0% | |
| CATCATAAGATTCATAACTG+TGG | - | chr4_1:60634479-60634498 | Msa0561160:CDS | 30.0% | |
| !!! | TTAGTTTTGAAGGAATGAAC+GGG | - | chr4_1:60634537-60634556 | Msa0561160:CDS | 30.0% |
| GATACCAACATCAATTGAAT+TGG | + | chr4_1:60634604-60634623 | None:intergenic | 30.0% | |
| ! | TGTGTCTTTCTTGTTTGATA+AGG | + | chr4_1:60634794-60634813 | None:intergenic | 30.0% |
| TGTCAATAGTTCTTCTATAG+AGG | + | chr4_1:60634952-60634971 | None:intergenic | 30.0% | |
| ACACATTATTACTTGCATCA+TGG | - | chr4_1:60635132-60635151 | Msa0561160:intron | 30.0% | |
| !!! | TTTTTTGGCACATTACTCTT+TGG | + | chr4_1:60635162-60635181 | None:intergenic | 30.0% |
| TAATGTGCCAAAAAATCTCA+AGG | - | chr4_1:60635167-60635186 | Msa0561160:intron | 30.0% | |
| !!! | GCTTATACCTTGAGATTTTT+TGG | + | chr4_1:60635177-60635196 | None:intergenic | 30.0% |
| TGGTAAGGTAAACTATACAA+TGG | + | chr4_1:60635286-60635305 | None:intergenic | 30.0% | |
| TTTCGATCAACTAATATGTC+TGG | + | chr4_1:60635312-60635331 | None:intergenic | 30.0% | |
| CATATTAGTTGATCGAAAAC+TGG | - | chr4_1:60635314-60635333 | Msa0561160:intron | 30.0% | |
| TTCCGTTTCATTTATCCATA+TGG | - | chr4_1:60635377-60635396 | Msa0561160:five_prime_UTR | 30.0% | |
| TCCGTTTCATTTATCCATAT+GGG | - | chr4_1:60635378-60635397 | Msa0561160:five_prime_UTR | 30.0% | |
| ACCCATATGGATAAATGAAA+CGG | + | chr4_1:60635382-60635401 | None:intergenic | 30.0% | |
| CTGTTTATCTTTCACCAAAA+AGG | + | chr4_1:60635496-60635515 | None:intergenic | 30.0% | |
| ATGTCATGTTCGAAAAAGAA+AGG | + | chr4_1:60635546-60635565 | None:intergenic | 30.0% | |
| AATGGTACTTCTGCAAAATA+AGG | + | chr4_1:60635666-60635685 | None:intergenic | 30.0% | |
| GTGTCAAACGTGTTTATTAC+AGG | + | chr4_1:60633030-60633049 | None:intergenic | 35.0% | |
| ATAAACACGTTTGACACGAA+AGG | - | chr4_1:60633033-60633052 | Msa0561160:intron | 35.0% | |
| !! | CTTATTTTTCAGCTGCAAGA+TGG | - | chr4_1:60633368-60633387 | Msa0561160:intron | 35.0% |
| AATTGACAACACTATGTGAC+AGG | - | chr4_1:60633641-60633660 | Msa0561160:intron | 35.0% | |
| ATGGGTTCATCAACCTATTA+TGG | - | chr4_1:60633692-60633711 | Msa0561160:intron | 35.0% | |
| TGGGTTCATCAACCTATTAT+GGG | - | chr4_1:60633693-60633712 | Msa0561160:intron | 35.0% | |
| TTTCTTTCGTAGCAGTATCT+TGG | - | chr4_1:60633731-60633750 | Msa0561160:intron | 35.0% | |
| !! | TCTCTGGAATTGTGTTTAGA+GGG | - | chr4_1:60633856-60633875 | Msa0561160:intron | 35.0% |
| ! | GAATTGTGTTTAGAGGGTTT+TGG | - | chr4_1:60633862-60633881 | Msa0561160:intron | 35.0% |
| ! | AAGATTTGTGTTGTTGGAAC+AGG | - | chr4_1:60633926-60633945 | Msa0561160:intron | 35.0% |
| GTGGGTGATTCCAATTATTT+GGG | - | chr4_1:60633968-60633987 | Msa0561160:intron | 35.0% | |
| GCAATTGGAACCCAAATAAT+TGG | + | chr4_1:60633981-60634000 | None:intergenic | 35.0% | |
| GTTCAAACTAAGAGCTATTG+GGG | - | chr4_1:60634125-60634144 | Msa0561160:intron | 35.0% | |
| ACATTGCATTATCTTCTCCA+TGG | - | chr4_1:60634152-60634171 | Msa0561160:intron | 35.0% | |
| CAAGTCTTAAGCTATCCATA+GGG | + | chr4_1:60634193-60634212 | None:intergenic | 35.0% | |
| ACAAGTCTTAAGCTATCCAT+AGG | + | chr4_1:60634194-60634213 | None:intergenic | 35.0% | |
| TACCATGTAGGCTATTAAAG+CGG | + | chr4_1:60634234-60634253 | None:intergenic | 35.0% | |
| TAACTGTGACATAGTTTCTC+TGG | - | chr4_1:60634333-60634352 | Msa0561160:intron | 35.0% | |
| ! | TGTGGTGTTAGTGTAAATGA+TGG | - | chr4_1:60634497-60634516 | Msa0561160:CDS | 35.0% |
| TGATGTTGGTATCAGAAGTA+CGG | - | chr4_1:60634611-60634630 | Msa0561160:CDS | 35.0% | |
| AAGTCTGTTAGTATTAGACG+AGG | - | chr4_1:60634697-60634716 | Msa0561160:intron | 35.0% | |
| ACGAGGAAGAAAGTAATGTT+AGG | - | chr4_1:60634714-60634733 | Msa0561160:intron | 35.0% | |
| CGAGGAAGAAAGTAATGTTA+GGG | - | chr4_1:60634715-60634734 | Msa0561160:intron | 35.0% | |
| TGTATGGTAGCAATACATGA+AGG | + | chr4_1:60634762-60634781 | None:intergenic | 35.0% | |
| GATAAGGCTTATGAGTTGTA+TGG | + | chr4_1:60634778-60634797 | None:intergenic | 35.0% | |
| !! | GTATTTCTGGCTAGTTGAAA+CGG | + | chr4_1:60634836-60634855 | None:intergenic | 35.0% |
| CGAAACAAGACATGTATTTC+TGG | + | chr4_1:60634849-60634868 | None:intergenic | 35.0% | |
| GCAGTAAATGAGTAGTACAT+AGG | - | chr4_1:60634922-60634941 | Msa0561160:CDS | 35.0% | |
| CACTTTCCCTTCTTAAAATG+TGG | - | chr4_1:60635196-60635215 | Msa0561160:CDS | 35.0% | |
| !! | TGTCGTCCACATTTTAAGAA+GGG | + | chr4_1:60635205-60635224 | None:intergenic | 35.0% |
| !! | TTGTCGTCCACATTTTAAGA+AGG | + | chr4_1:60635206-60635225 | None:intergenic | 35.0% |
| AAAAGTAACACATTGGAGCA+AGG | + | chr4_1:60635238-60635257 | None:intergenic | 35.0% | |
| !! | TAATATGTCTGGCTTTGGTA+AGG | + | chr4_1:60635301-60635320 | None:intergenic | 35.0% |
| ! | TCAACTAATATGTCTGGCTT+TGG | + | chr4_1:60635306-60635325 | None:intergenic | 35.0% |
| AATGTCACAGTAGTAACTAG+TGG | + | chr4_1:60635354-60635373 | None:intergenic | 35.0% | |
| CATATGGGTCTCTTAAACTT+GGG | - | chr4_1:60635393-60635412 | Msa0561160:five_prime_UTR | 35.0% | |
| ! | AGTAACAACAGTGACCTTTT+TGG | - | chr4_1:60635479-60635498 | Msa0561160:five_prime_UTR | 35.0% |
| AGCTCCTACTAAGAATATGA+TGG | - | chr4_1:60635514-60635533 | Msa0561160:five_prime_UTR | 35.0% | |
| TGCACCATCATATTCTTAGT+AGG | + | chr4_1:60635521-60635540 | None:intergenic | 35.0% | |
| ACTTGTCAGTTGTCTTTCTA+AGG | + | chr4_1:60635632-60635651 | None:intergenic | 35.0% | |
| GTACTTCTGCAAAATAAGGA+AGG | + | chr4_1:60635662-60635681 | None:intergenic | 35.0% | |
| ACCATTTGAATCATCACTAC+AGG | - | chr4_1:60635680-60635699 | Msa0561160:five_prime_UTR | 35.0% | |
| CCATTTGAATCATCACTACA+GGG | - | chr4_1:60635681-60635700 | Msa0561160:five_prime_UTR | 35.0% | |
| !! | ATGGGATAAGGTTTTTGGAA+CGG | - | chr4_1:60635738-60635757 | Msa0561160:five_prime_UTR | 35.0% |
| ATGAGAAAGATCATTGGCAC+AGG | + | chr4_1:60632866-60632885 | None:intergenic | 40.0% | |
| ! | AAGTCTCCCTCTTTGAAAGA+GGG | + | chr4_1:60633248-60633267 | None:intergenic | 40.0% |
| ! | TAAGTCTCCCTCTTTGAAAG+AGG | + | chr4_1:60633249-60633268 | None:intergenic | 40.0% |
| AAAAGAAGCAGAAGCAGATC+TGG | + | chr4_1:60633311-60633330 | None:intergenic | 40.0% | |
| ! | GAATAAACCCCTTGTTTGTC+AGG | - | chr4_1:60633416-60633435 | Msa0561160:intron | 40.0% |
| TTGGTTACCTGACAAACAAG+GGG | + | chr4_1:60633426-60633445 | None:intergenic | 40.0% | |
| GTTGGTTACCTGACAAACAA+GGG | + | chr4_1:60633427-60633446 | None:intergenic | 40.0% | |
| AGTTGGTTACCTGACAAACA+AGG | + | chr4_1:60633428-60633447 | None:intergenic | 40.0% | |
| TAATCCTATTCGAGTCGTGT+CGG | - | chr4_1:60633492-60633511 | Msa0561160:CDS | 40.0% | |
| ! | TCTGGAGTTTGGTTGAGTAT+CGG | + | chr4_1:60633590-60633609 | None:intergenic | 40.0% |
| !! | TTCTTACGTACTCTGGAGTT+TGG | + | chr4_1:60633601-60633620 | None:intergenic | 40.0% |
| TCATCAACCTATTATGGGCA+AGG | - | chr4_1:60633698-60633717 | Msa0561160:intron | 40.0% | |
| TACTGCTACGAAAGAAACGA+GGG | + | chr4_1:60633728-60633747 | None:intergenic | 40.0% | |
| ATACTGCTACGAAAGAAACG+AGG | + | chr4_1:60633729-60633748 | None:intergenic | 40.0% | |
| !! | CGACTCAAAAGATTAGTCTC+TGG | - | chr4_1:60633840-60633859 | Msa0561160:intron | 40.0% |
| !! | GTCTCTGGAATTGTGTTTAG+AGG | - | chr4_1:60633855-60633874 | Msa0561160:intron | 40.0% |
| GGTGGGTGATTCCAATTATT+TGG | - | chr4_1:60633967-60633986 | Msa0561160:intron | 40.0% | |
| ! | TGCTACTCGGCATTTTTGTA+TGG | - | chr4_1:60634063-60634082 | Msa0561160:intron | 40.0% |
| ! | TAGAAAGGGGTATACCATGT+AGG | + | chr4_1:60634246-60634265 | None:intergenic | 40.0% |
| TTTGAAGGAATGAACGGGAA+TGG | - | chr4_1:60634542-60634561 | Msa0561160:CDS | 40.0% | |
| TTGAAGGAATGAACGGGAAT+GGG | - | chr4_1:60634543-60634562 | Msa0561160:CDS | 40.0% | |
| AATGTTAGGGTCAAATGCAG+AGG | - | chr4_1:60634728-60634747 | Msa0561160:intron | 40.0% | |
| !!! | TGTGTTTGGAGGCATTTTGT+TGG | - | chr4_1:60635089-60635108 | Msa0561160:intron | 40.0% |
| !!! | GTGTTTGGAGGCATTTTGTT+GGG | - | chr4_1:60635090-60635109 | Msa0561160:intron | 40.0% |
| CCAAGTTTAAGAGACCCATA+TGG | + | chr4_1:60635395-60635414 | None:intergenic | 40.0% | |
| CCATATGGGTCTCTTAAACT+TGG | - | chr4_1:60635392-60635411 | Msa0561160:five_prime_UTR | 40.0% | |
| CCCTGTAGTGATGATTCAAA+TGG | + | chr4_1:60635684-60635703 | None:intergenic | 40.0% | |
| CCAAAAACCTTATCCCATAG+TGG | + | chr4_1:60635736-60635755 | None:intergenic | 40.0% | |
| ! | CCACTATGGGATAAGGTTTT+TGG | - | chr4_1:60635733-60635752 | Msa0561160:five_prime_UTR | 40.0% |
| GACGACACAGTGGTAAATTG+GGG | + | chr4_1:60632815-60632834 | None:intergenic | 45.0% | |
| GGACGACACAGTGGTAAATT+GGG | + | chr4_1:60632816-60632835 | None:intergenic | 45.0% | |
| ! | AGTGAGTGGGGTATGTTTTG+GGG | + | chr4_1:60632837-60632856 | None:intergenic | 45.0% |
| ! | GAGTGAGTGGGGTATGTTTT+GGG | + | chr4_1:60632838-60632857 | None:intergenic | 45.0% |
| ! | TGAGTGAGTGGGGTATGTTT+TGG | + | chr4_1:60632839-60632858 | None:intergenic | 45.0% |
| CTGTTCCGAACATGATGATC+TGG | + | chr4_1:60632898-60632917 | None:intergenic | 45.0% | |
| TTAGCCTCCCTCTTTCAAAG+AGG | - | chr4_1:60633238-60633257 | Msa0561160:intron | 45.0% | |
| TAGCCTCCCTCTTTCAAAGA+GGG | - | chr4_1:60633239-60633258 | Msa0561160:intron | 45.0% | |
| CTTCTCTTCTCAGATCTCCT+CGG | - | chr4_1:60633272-60633291 | Msa0561160:intron | 45.0% | |
| CTGGAAAATGAAACGAACCG+AGG | + | chr4_1:60633292-60633311 | None:intergenic | 45.0% | |
| GACAACACTATGTGACAGGT+TGG | - | chr4_1:60633645-60633664 | Msa0561160:intron | 45.0% | |
| !! | ATGTGACAGGTTGGTCATCT+TGG | - | chr4_1:60633654-60633673 | Msa0561160:intron | 45.0% |
| CAACCTATTATGGGCAAGGA+AGG | - | chr4_1:60633702-60633721 | Msa0561160:intron | 45.0% | |
| CTTTCGTAGCAGTATCTTGG+AGG | - | chr4_1:60633734-60633753 | Msa0561160:intron | 45.0% | |
| AATGTAGGTAGGGTAGGGTA+GGG | + | chr4_1:60633766-60633785 | None:intergenic | 45.0% | |
| TAATGTAGGTAGGGTAGGGT+AGG | + | chr4_1:60633767-60633786 | None:intergenic | 45.0% | |
| ! | TATCCATAGGGTGCTTATGG+TGG | + | chr4_1:60634181-60634200 | None:intergenic | 45.0% |
| ! | AGCTATCCATAGGGTGCTTA+TGG | + | chr4_1:60634184-60634203 | None:intergenic | 45.0% |
| !! | AGACTTGTTTTTCCACCAGC+TGG | - | chr4_1:60634206-60634225 | Msa0561160:intron | 45.0% |
| ! | AGCCGCTTTAATAGCCTACA+TGG | - | chr4_1:60634229-60634248 | Msa0561160:intron | 45.0% |
| TAGGGTCAAATGCAGAGGTT+AGG | - | chr4_1:60634733-60634752 | Msa0561160:intron | 45.0% | |
| AGGGAATACAAGCTTCACTG+AGG | + | chr4_1:60635052-60635071 | None:intergenic | 45.0% | |
| AACACAGCAGGAGCAATTGA+AGG | + | chr4_1:60635075-60635094 | None:intergenic | 45.0% | |
| TCAATTGCTCCTGCTGTGTT+TGG | - | chr4_1:60635075-60635094 | Msa0561160:intron | 45.0% | |
| AAAATGCCTCCAAACACAGC+AGG | + | chr4_1:60635087-60635106 | None:intergenic | 45.0% | |
| TTGGCATCACTTCACCACTA+TGG | - | chr4_1:60635719-60635738 | Msa0561160:five_prime_UTR | 45.0% | |
| TGGCATCACTTCACCACTAT+GGG | - | chr4_1:60635720-60635739 | Msa0561160:five_prime_UTR | 45.0% | |
| CACTTCACCACTATGGGATA+AGG | - | chr4_1:60635726-60635745 | Msa0561160:five_prime_UTR | 45.0% | |
| !! | TTGGCATCCACTTTTGATGG+AGG | + | chr4_1:60635769-60635788 | None:intergenic | 45.0% |
| !! | CGTTTGGCATCCACTTTTGA+TGG | + | chr4_1:60635772-60635791 | None:intergenic | 45.0% |
| GGGACGACACAGTGGTAAAT+TGG | + | chr4_1:60632817-60632836 | None:intergenic | 50.0% | |
| !!! | ATGTTTTGGGGACGACACAG+TGG | + | chr4_1:60632825-60632844 | None:intergenic | 50.0% |
| CACAGGTAAGTGAGTGAGTG+GGG | + | chr4_1:60632849-60632868 | None:intergenic | 50.0% | |
| GCACAGGTAAGTGAGTGAGT+GGG | + | chr4_1:60632850-60632869 | None:intergenic | 50.0% | |
| TGACACGAAAGGTCGAGAAG+CGG | - | chr4_1:60633044-60633063 | Msa0561160:intron | 50.0% | |
| ! | TCTCCCTCTTTGAAAGAGGG+AGG | + | chr4_1:60633245-60633264 | None:intergenic | 50.0% |
| ! | AGGTTTTCACGCGAACTGCT+TGG | - | chr4_1:60633946-60633965 | Msa0561160:intron | 50.0% |
| ! | TTTTCACGCGAACTGCTTGG+TGG | - | chr4_1:60633949-60633968 | Msa0561160:intron | 50.0% |
| TTTCACGCGAACTGCTTGGT+GGG | - | chr4_1:60633950-60633969 | Msa0561160:intron | 50.0% | |
| AAAGAGGGAGGTGAGGAACA+GGG | + | chr4_1:60634040-60634059 | None:intergenic | 50.0% | |
| AAAAGAGGGAGGTGAGGAAC+AGG | + | chr4_1:60634041-60634060 | None:intergenic | 50.0% | |
| !! | CTCCCTCTTTTCGTGCTACT+CGG | - | chr4_1:60634050-60634069 | Msa0561160:intron | 50.0% |
| TGCCGAGTAGCACGAAAAGA+GGG | + | chr4_1:60634055-60634074 | None:intergenic | 50.0% | |
| ATGCCGAGTAGCACGAAAAG+AGG | + | chr4_1:60634056-60634075 | None:intergenic | 50.0% | |
| TTGCCACCATAAGCACCCTA+TGG | - | chr4_1:60634175-60634194 | Msa0561160:intron | 50.0% | |
| TTGTCTGCAACGTCCAGATC+TGG | - | chr4_1:60635025-60635044 | Msa0561160:intron | 50.0% | |
| CAGCAGGAGCAATTGAAGGA+GGG | + | chr4_1:60635071-60635090 | None:intergenic | 50.0% | |
| ACAGCAGGAGCAATTGAAGG+AGG | + | chr4_1:60635072-60635091 | None:intergenic | 50.0% | |
| ATTGCTCCTGCTGTGTTTGG+AGG | - | chr4_1:60635078-60635097 | Msa0561160:intron | 50.0% | |
| GTGAAGTGATGCCAAAGCCA+AGG | + | chr4_1:60635714-60635733 | None:intergenic | 50.0% | |
| GGTTCCTCCTCCATCAAAAG+TGG | - | chr4_1:60635759-60635778 | Msa0561160:five_prime_UTR | 50.0% | |
| !! | GCATCCACTTTTGATGGAGG+AGG | + | chr4_1:60635766-60635785 | None:intergenic | 50.0% |
| GGCACAGGTAAGTGAGTGAG+TGG | + | chr4_1:60632851-60632870 | None:intergenic | 55.0% | |
| GTGTCCGACACGACTCGAAT+AGG | + | chr4_1:60633499-60633518 | None:intergenic | 55.0% | |
| GGGCCTTCCTTGCCCATAAT+AGG | + | chr4_1:60633708-60633727 | None:intergenic | 55.0% | |
| TAGGTAGGGTAGGGTAGGGT+AGG | + | chr4_1:60633762-60633781 | None:intergenic | 55.0% | |
| AGCACGAAAAGAGGGAGGTG+AGG | + | chr4_1:60634047-60634066 | None:intergenic | 55.0% | |
| CGAGTAGCACGAAAAGAGGG+AGG | + | chr4_1:60634052-60634071 | None:intergenic | 55.0% | |
| GGTGCTTATGGTGGCAACCA+TGG | + | chr4_1:60634172-60634191 | None:intergenic | 55.0% | |
| ATTAAAGCGGCTCCAGCTGG+TGG | + | chr4_1:60634221-60634240 | None:intergenic | 55.0% | |
| GCTATTAAAGCGGCTCCAGC+TGG | + | chr4_1:60634224-60634243 | None:intergenic | 55.0% | |
| GCTTCACTGAGGACCAGATC+TGG | + | chr4_1:60635041-60635060 | None:intergenic | 55.0% | |
| TGATGCCAAAGCCAAGGCTC+TGG | + | chr4_1:60635708-60635727 | None:intergenic | 55.0% | |
| CACTACAGGGTCCAGAGCCT+TGG | - | chr4_1:60635694-60635713 | Msa0561160:five_prime_UTR | 60.0% | |
| AGGGTCCAGAGCCTTGGCTT+TGG | - | chr4_1:60635700-60635719 | Msa0561160:five_prime_UTR | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 60632809 | 60635823 | 60632809 | ID=Msa0561160;Name=Msa0561160 |
| chr4_1 | mRNA | 60632809 | 60635823 | 60632809 | ID=Msa0561160-mRNA-1;Parent=Msa0561160;Name=Msa0561160-mRNA-1;_AED=0.31;_eAED=0.31;_QI=492|1|1|1|0.8|0.66|6|25|238 |
| chr4_1 | exon | 60632809 | 60632956 | 60632809 | ID=Msa0561160-mRNA-1:exon:18962;Parent=Msa0561160-mRNA-1 |
| chr4_1 | exon | 60633444 | 60633590 | 60633444 | ID=Msa0561160-mRNA-1:exon:18961;Parent=Msa0561160-mRNA-1 |
| chr4_1 | exon | 60634382 | 60634684 | 60634382 | ID=Msa0561160-mRNA-1:exon:18960;Parent=Msa0561160-mRNA-1 |
| chr4_1 | exon | 60634877 | 60634969 | 60634877 | ID=Msa0561160-mRNA-1:exon:18959;Parent=Msa0561160-mRNA-1 |
| chr4_1 | exon | 60635195 | 60635252 | 60635195 | ID=Msa0561160-mRNA-1:exon:18958;Parent=Msa0561160-mRNA-1 |
| chr4_1 | exon | 60635339 | 60635823 | 60635339 | ID=Msa0561160-mRNA-1:exon:18957;Parent=Msa0561160-mRNA-1 |
| chr4_1 | five_prime_UTR | 60635339 | 60635823 | 60635339 | ID=Msa0561160-mRNA-1:five_prime_utr;Parent=Msa0561160-mRNA-1 |
| chr4_1 | five_prime_UTR | 60635246 | 60635252 | 60635246 | ID=Msa0561160-mRNA-1:five_prime_utr;Parent=Msa0561160-mRNA-1 |
| chr4_1 | CDS | 60635195 | 60635245 | 60635195 | ID=Msa0561160-mRNA-1:cds;Parent=Msa0561160-mRNA-1 |
| chr4_1 | CDS | 60634877 | 60634969 | 60634877 | ID=Msa0561160-mRNA-1:cds;Parent=Msa0561160-mRNA-1 |
| chr4_1 | CDS | 60634382 | 60634684 | 60634382 | ID=Msa0561160-mRNA-1:cds;Parent=Msa0561160-mRNA-1 |
| chr4_1 | CDS | 60633444 | 60633590 | 60633444 | ID=Msa0561160-mRNA-1:cds;Parent=Msa0561160-mRNA-1 |
| chr4_1 | CDS | 60632834 | 60632956 | 60632834 | ID=Msa0561160-mRNA-1:cds;Parent=Msa0561160-mRNA-1 |
| chr4_1 | three_prime_UTR | 60632809 | 60632833 | 60632809 | ID=Msa0561160-mRNA-1:three_prime_utr;Parent=Msa0561160-mRNA-1 |
| Gene Sequence |
| Protein sequence |
