AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0592710

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0592710 MtrunA17_Chr4g0010781 72.093 516 70 4 1 516 1 442 0.0 717
Msa0592710 MtrunA17_Chr3g0087741 65.667 300 93 4 220 515 149 442 6.16e-130 385
Msa0592710 MtrunA17_Chr3g0087741 67.742 155 43 3 1 150 1 153 4.23e-60 204
Msa0592710 MtrunA17_Chr5g0426951 40.925 281 150 3 232 502 152 426 3.04e-65 219
Msa0592710 MtrunA17_Chr5g0426951 35.333 150 89 2 1 150 6 147 5.85e-20 92.8
Msa0592710 MtrunA17_Chr4g0010801 53.012 166 39 1 280 406 2 167 2.79e-47 163
Msa0592710 MtrunA17_Chr6g0478651 28.878 419 228 8 85 499 67 419 3.02e-46 169
Msa0592710 MtrunA17_Chr3g0123861 35.075 268 169 2 243 506 167 433 2.20e-45 165
Msa0592710 MtrunA17_Chr3g0123861 46.602 103 38 3 63 149 43 144 3.12e-16 80.9
Msa0592710 MtrunA17_Chr4g0010811 82.418 91 15 1 427 516 9 99 2.18e-43 149
Msa0592710 MtrunA17_Chr2g0333221 31.511 311 187 5 223 516 143 444 1.57e-38 147
Msa0592710 MtrunA17_Chr2g0333221 48.000 75 38 1 75 149 59 132 4.24e-13 71.6
Msa0592710 MtrunA17_Chr8g0334811 29.492 295 171 10 216 484 62 345 2.36e-27 114
Msa0592710 MtrunA17_Chr8g0334811 60.317 63 21 2 87 149 15 73 4.84e-12 67.8
Msa0592710 MtrunA17_Chr2g0322181 31.381 239 152 7 268 496 119 355 3.88e-27 113
Msa0592710 MtrunA17_Chr4g0025401 30.126 239 155 7 268 496 117 353 9.03e-25 106
Msa0592710 MtrunA17_Chr7g0254561 97.727 44 1 0 151 194 12 55 4.37e-23 94.7
Msa0592710 MtrunA17_Chr7g0254561 94.286 35 2 0 151 185 90 124 9.20e-16 73.9
Msa0592710 MtrunA17_Chr7g0243841 73.684 57 14 1 151 206 15 71 2.19e-21 88.6
Msa0592710 MtrunA17_Chr7g0244051 90.698 43 4 0 152 194 55 97 2.33e-20 87.4
Msa0592710 MtrunA17_Chr2g0280071 95.455 44 2 0 151 194 555 598 9.21e-20 93.2
Msa0592710 MtrunA17_Chr2g0280071 97.222 36 1 0 151 186 633 668 4.93e-15 78.2
Msa0592710 MtrunA17_Chr4g0014961 86.842 38 5 0 151 188 43 80 2.49e-17 77.8
Msa0592710 MtrunA17_Chr1g0209551 28.369 282 148 7 82 355 12 247 4.78e-17 83.2
Msa0592710 MtrunA17_Chr1g0159491 53.968 63 29 0 87 149 7 69 1.42e-16 74.7
Msa0592710 MtrunA17_Chr5g0424811 77.273 44 10 0 151 194 9 52 3.34e-16 73.9
Msa0592710 MtrunA17_Chr7g0269841 57.143 70 30 0 80 149 20 89 8.88e-16 79.0
Msa0592710 MtrunA17_Chr5g0429981 91.667 36 3 0 151 186 89 124 9.24e-16 75.1
Msa0592710 MtrunA17_Chr5g0429981 94.118 34 2 0 161 194 21 54 1.59e-14 71.2
Msa0592710 MtrunA17_Chr8g0352451 56.250 64 28 0 86 149 72 135 1.46e-14 75.5
Msa0592710 MtrunA17_Chr5g0414471 48.000 75 39 0 74 148 13 87 1.57e-14 75.5
Msa0592710 MtrunA17_Chr5g0393371 58.065 62 26 0 87 148 7 68 3.11e-14 74.7
Msa0592710 MtrunA17_Chr1g0159511 54.688 64 29 0 86 149 6 69 1.19e-13 72.8
Msa0592710 MtrunA17_Chr7g0263971 54.545 66 29 1 85 149 368 433 1.29e-13 73.2
Msa0592710 MtrunA17_Chr7g0258061 55.385 65 29 0 85 149 21 85 2.67e-13 70.5
Msa0592710 MtrunA17_Chr1g0206121 57.377 61 25 1 88 148 37 96 3.10e-13 70.5
Msa0592710 MtrunA17_Chr2g0282761 50.000 68 33 1 83 149 1 68 1.44e-12 68.9
Msa0592710 MtrunA17_Chr7g0271891 48.485 66 30 1 87 148 17 82 2.33e-12 65.1
Msa0592710 MtrunA17_Chr7g0217151 61.702 47 18 0 139 185 31 77 2.95e-12 62.8
Msa0592710 MtrunA17_Chr5g0427221 43.284 67 38 0 82 148 44 110 4.24e-12 63.9
Msa0592710 MtrunA17_Chr2g0282741 42.105 95 49 2 86 174 4 98 5.04e-12 67.4
Msa0592710 MtrunA17_Chr4g0022961 74.286 35 9 0 151 185 69 103 5.08e-12 62.4
Msa0592710 MtrunA17_Chr4g0022961 85.294 34 5 0 161 194 1 34 1.62e-11 61.2
Msa0592710 MtrunA17_Chr4g0021141 46.875 64 34 0 85 148 21 84 6.21e-12 63.2
Msa0592710 MtrunA17_Chr4g0040501 51.562 64 30 1 87 149 5 68 8.08e-12 66.6
Msa0592710 MtrunA17_Chr3g0138471 46.154 65 34 1 87 150 5 69 1.35e-11 65.9
Msa0592710 MtrunA17_Chr1g0173931 53.125 64 30 0 86 149 38 101 1.41e-11 65.5
Msa0592710 MtrunA17_Chr2g0328581 50.820 61 29 1 88 148 77 136 4.14e-11 62.4
Msa0592710 MtrunA17_Chr2g0324921 47.692 65 33 1 86 149 4 68 6.17e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0592710 AT5G48030.1 56.667 300 120 3 224 515 158 455 8.12e-114 345
Msa0592710 AT5G48030.1 50.307 163 63 6 1 150 1 158 5.24e-35 137
Msa0592710 AT1G28210.3 33.945 436 198 12 75 502 34 387 7.91e-65 216
Msa0592710 AT1G28210.1 33.945 436 198 12 75 502 34 387 8.79e-65 216
Msa0592710 AT1G28210.2 33.945 436 198 12 75 502 34 387 1.89e-64 216
Msa0592710 AT2G22360.1 35.172 290 161 6 234 506 157 436 4.55e-45 164
Msa0592710 AT2G22360.1 42.735 117 63 3 35 149 34 148 3.91e-16 81.3
Msa0592710 AT4G39960.1 34.680 297 161 5 233 505 154 441 3.00e-44 162
Msa0592710 AT4G39960.1 57.143 63 26 1 87 149 86 147 5.35e-14 74.7
Msa0592710 AT4G39960.2 34.680 297 161 5 233 505 154 441 3.00e-44 162
Msa0592710 AT4G39960.2 57.143 63 26 1 87 149 86 147 5.35e-14 74.7
Msa0592710 AT3G17830.1 33.745 243 157 1 260 498 175 417 9.05e-42 157
Msa0592710 AT3G17830.1 50.794 63 30 1 87 149 64 125 6.37e-12 68.2
Msa0592710 AT1G80030.2 30.844 308 181 4 227 510 140 439 1.24e-39 150
Msa0592710 AT1G80030.2 57.143 63 26 1 87 149 76 137 1.25e-13 73.6
Msa0592710 AT1G80030.3 30.844 308 181 4 227 510 140 439 1.24e-39 150
Msa0592710 AT1G80030.3 57.143 63 26 1 87 149 76 137 1.25e-13 73.6
Msa0592710 AT1G80030.1 30.844 308 181 4 227 510 140 439 1.24e-39 150
Msa0592710 AT1G80030.1 57.143 63 26 1 87 149 76 137 1.25e-13 73.6
Msa0592710 AT1G80030.4 30.844 308 181 4 227 510 140 439 1.71e-39 150
Msa0592710 AT1G80030.4 57.143 63 26 1 87 149 76 137 1.27e-13 73.6
Msa0592710 AT5G22060.1 29.057 265 163 7 255 496 94 356 1.11e-24 106
Msa0592710 AT3G44110.1 29.583 240 157 7 267 496 118 355 4.98e-24 104
Msa0592710 AT3G44110.2 30.890 191 122 6 267 449 118 306 2.04e-19 90.1
Msa0592710 AT1G68370.1 27.000 300 149 10 73 355 2 248 1.18e-15 79.3
Msa0592710 AT3G12170.2 43.820 89 50 0 61 149 22 110 5.66e-15 76.3
Msa0592710 AT4G39150.3 58.730 63 26 0 87 149 7 69 9.19e-15 76.3
Msa0592710 AT4G39150.1 58.730 63 26 0 87 149 7 69 9.19e-15 76.3
Msa0592710 AT4G39150.2 58.730 63 26 0 87 149 7 69 9.19e-15 76.3
Msa0592710 AT1G56300.2 45.946 74 36 1 79 148 6 79 1.37e-14 70.9
Msa0592710 AT5G06910.1 56.250 64 28 0 86 149 29 92 2.54e-14 73.9
Msa0592710 AT1G76700.1 58.065 62 26 0 87 148 7 68 4.75e-14 74.3
Msa0592710 AT2G21510.3 55.556 63 28 0 87 149 7 69 5.35e-14 73.9
Msa0592710 AT2G21510.1 55.556 63 28 0 87 149 7 69 5.35e-14 73.9
Msa0592710 AT2G21510.2 55.556 63 28 0 87 149 7 69 6.13e-14 73.6
Msa0592710 AT2G21510.4 55.556 63 28 0 87 149 7 69 6.13e-14 73.6
Msa0592710 AT2G21510.5 54.688 64 29 0 86 149 6 69 6.19e-14 73.6
Msa0592710 AT1G71000.2 44.286 70 35 1 83 148 5 74 7.81e-14 70.1
Msa0592710 AT1G56300.1 45.946 74 36 1 79 148 6 79 1.23e-13 68.9
Msa0592710 AT3G62600.1 55.385 65 29 0 85 149 25 89 1.43e-13 72.4
Msa0592710 AT1G71000.1 44.286 70 35 1 83 148 5 74 1.81e-13 68.9
Msa0592710 AT1G59980.2 51.562 64 31 0 85 148 22 85 3.26e-13 71.6
Msa0592710 AT1G21080.3 54.839 62 28 0 87 148 7 68 3.68e-13 71.6
Msa0592710 AT1G21080.1 54.839 62 28 0 87 148 7 68 4.09e-13 71.6
Msa0592710 AT3G12170.1 52.308 65 31 0 85 149 10 74 4.21e-13 70.1
Msa0592710 AT1G59980.1 51.562 64 31 0 85 148 22 85 6.09e-13 71.2
Msa0592710 AT1G77020.1 53.968 63 29 0 87 149 7 69 6.87e-13 70.9
Msa0592710 AT1G24120.1 50.000 66 33 0 83 148 17 82 2.25e-12 69.3
Msa0592710 AT5G25530.2 47.059 68 35 1 83 149 1 68 2.98e-12 68.6
Msa0592710 AT3G08970.1 55.738 61 26 1 88 148 29 88 8.19e-12 68.2
Msa0592710 AT3G08970.2 55.738 61 26 1 88 148 29 88 8.19e-12 68.2
Msa0592710 AT5G03160.1 50.000 66 32 1 85 149 369 434 1.40e-11 67.0
Msa0592710 AT1G61770.1 50.820 61 29 1 88 148 36 95 1.55e-11 65.9
Msa0592710 AT2G33735.1 43.077 65 37 0 85 149 21 85 2.39e-11 61.6
Msa0592710 AT2G33735.2 43.077 65 37 0 85 149 21 85 2.39e-11 61.6
Msa0592710 AT5G16650.1 46.269 67 36 0 82 148 7 73 5.90e-11 60.5
Msa0592710 AT3G08910.1 48.438 64 32 1 87 149 5 68 6.75e-11 64.3
Msa0592710 AT1G10350.1 46.875 64 33 1 87 149 5 68 8.13e-11 63.9
Msa0592710 AT4G28480.2 47.692 65 33 1 86 149 4 68 9.41e-11 63.2
Msa0592710 AT5G01390.2 48.438 64 32 1 87 149 5 68 9.62e-11 63.2

Find 177 sgRNAs with CRISPR-Local

Find 636 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAATTTGTTTCAGGCGATTT+TGG 0.110103 4_2:+18228053 Msa0592710:intron
GGAGCGGCTAATTCATATTT+TGG 0.131687 4_2:+18221863 Msa0592710:CDS
TCCATTTCCTCAAATTAATT+AGG 0.137163 4_2:+18220888 Msa0592710:five_prime_UTR
TTCGGACACTTATGTATTTA+TGG 0.139241 4_2:-18229739 None:intergenic
AATCCATCATCTACTGTTAT+TGG 0.177439 4_2:+18221209 Msa0592710:CDS
TTGCATCGCTTACAAGTTTC+AGG 0.178751 4_2:-18225796 None:intergenic
GGAATAAATACTTTCAAATA+TGG 0.202915 4_2:+18229028 Msa0592710:intron
TTCTGACCAGGTTGGGTGCC+TGG 0.211158 4_2:-18228422 None:intergenic
TCAGAGCCTCTTCACGATTA+TGG 0.211387 4_2:+18224442 Msa0592710:CDS
CCATTTCCTCAAATTAATTA+GGG 0.221010 4_2:+18220889 Msa0592710:five_prime_UTR
TGTTGTCAGGTTTCCGTTAT+CGG 0.266807 4_2:+18224471 Msa0592710:CDS
TAGTGTTTCAAAGGGGTTAT+AGG 0.275001 4_2:+18221180 Msa0592710:CDS
TAATTTGAGGAAATGGAAAT+TGG 0.277674 4_2:-18220882 None:intergenic
TTTGATTGAATAGGTGAATT+GGG 0.281655 4_2:-18220947 None:intergenic
CCCTAATTAATTTGAGGAAA+TGG 0.291408 4_2:-18220889 None:intergenic
CCCAACCACCATTTCTAATA+TGG 0.299500 4_2:+18224417 Msa0592710:CDS
CACCACCTCCATGTACCTTT+AGG 0.307308 4_2:-18226737 None:intergenic
GAAATAAAGAAAGCTTACTA+TGG 0.322849 4_2:+18222277 Msa0592710:CDS
TTTGAAGAACTGGTTGCTAT+TGG 0.328085 4_2:+18221841 Msa0592710:CDS
CTTTGTTCCTTTGACAACTT+TGG 0.331164 4_2:-18226302 None:intergenic
GCCAGTAGGACGAATCATTT+GGG 0.345959 4_2:-18221000 None:intergenic
ATAGTAAGCTTTCTTTATTT+CGG 0.347885 4_2:-18222275 None:intergenic
ACCACCTCCATGTACCTTTA+GGG 0.357234 4_2:-18226736 None:intergenic
TACTGGAAGTGTAAGGCTTA+AGG 0.363232 4_2:+18228101 Msa0592710:CDS
TGATTTCTCTTGCTCTTCCT+TGG 0.365509 4_2:-18229317 None:intergenic
CAGAGCCTCTTCACGATTAT+GGG 0.367420 4_2:+18224443 Msa0592710:CDS
TTGGAAGATTCTAGTAGAAC+CGG 0.371487 4_2:-18220863 None:intergenic
TTGAAGAACTGGTTGCTATT+GGG 0.372635 4_2:+18221842 Msa0592710:CDS
TTTGTAGGTGCATTAATTAA+GGG 0.375022 4_2:+18229453 Msa0592710:three_prime_UTR
TGCCAGTAGGACGAATCATT+TGG 0.376227 4_2:-18221001 None:intergenic
TGTAACTCATCCTCGCTTCC+CGG 0.383507 4_2:+18220844 Msa0592710:five_prime_UTR
GGATCATCTTTATTTGCGTC+TGG 0.383886 4_2:-18223529 None:intergenic
GTCCAGATGTTTGTACATAC+TGG 0.387282 4_2:+18225908 Msa0592710:intron
AGGAGCTATTACGATGTTCT+TGG 0.393663 4_2:+18222229 Msa0592710:CDS
TGTTTGAAATGACAAAGTTT+TGG 0.411973 4_2:-18225597 None:intergenic
GGGGCAACTAGATCTATTCA+TGG 0.412586 4_2:+18221884 Msa0592710:CDS
TCTGACCAGGTTGGGTGCCT+GGG 0.413133 4_2:-18228421 None:intergenic
AGAAGTTACATTGGCATATG+AGG 0.415080 4_2:+18223573 Msa0592710:CDS
GAATAAATACTTTCAAATAT+GGG 0.416410 4_2:+18229029 Msa0592710:CDS
GTTGTCAGGTTTCCGTTATC+GGG 0.421265 4_2:+18224472 Msa0592710:CDS
AACAACCAAAGTGGTGGTTT+CGG 0.424450 4_2:+18224719 Msa0592710:CDS
CTTTGACAACTTTGGCACCT+TGG 0.428176 4_2:-18226294 None:intergenic
TCACCGGAACGGTTTGAATC+AGG 0.428315 4_2:-18226768 None:intergenic
TGTGCTACATGCAAGGGAAC+TGG 0.431002 4_2:+18225953 Msa0592710:CDS
CCCCAAATGATTCGTCCTAC+TGG 0.434059 4_2:+18220999 Msa0592710:exon
AAAGATGTGTACGGAATGAT+TGG 0.438202 4_2:-18221066 None:intergenic
ATGGTGTTAATTTGAAGAAC+TGG 0.439077 4_2:+18221831 Msa0592710:CDS
AGCAAGAGAAATCAGATAAA+CGG 0.441080 4_2:+18229326 Msa0592710:CDS
ATTATGGGCCACCTGTTGTC+AGG 0.444761 4_2:+18224458 Msa0592710:CDS
CCTGACAATTTGTTTATAAG+TGG 0.445107 4_2:+18224349 Msa0592710:CDS
AACTAGATCTATTCATGGCT+CGG 0.445228 4_2:+18221889 Msa0592710:CDS
CTCTGATACCATATTAGAAA+TGG 0.449607 4_2:-18224425 None:intergenic
CATTTGGGGAATTGAATTGA+AGG 0.450855 4_2:-18220985 None:intergenic
AACCACCTTCTGACCAGGTT+GGG 0.452721 4_2:-18228429 None:intergenic
AGATAAACGGAAAGCTGCTT+CGG 0.455187 4_2:+18229339 Msa0592710:CDS
ACTAAATAAATAATGAAAAG+TGG 0.456261 4_2:-18229381 None:intergenic
CGATGTTCTTGGTGTGAGTA+AGG 0.456412 4_2:+18222240 Msa0592710:CDS
ATTCACGCTGTCTTTCTGTC+AGG 0.461065 4_2:-18229279 None:intergenic
GGTGGGAGTGGTCTTCCTCC+TGG 0.467186 4_2:+18225766 Msa0592710:intron
CCATATTAGAAATGGTGGTT+GGG 0.470567 4_2:-18224417 None:intergenic
TATATCAAGTAGTGTTTCAA+AGG 0.471709 4_2:+18221171 Msa0592710:CDS
CTAACACAACCCCACAAAAC+CGG 0.475920 4_2:-18224393 None:intergenic
TTAAGATTCCCACATCGGTT+AGG 0.478108 4_2:+18224320 Msa0592710:intron
GATCCTGATTCAAACCGTTC+CGG 0.480511 4_2:+18226765 Msa0592710:CDS
ACCATATTAGAAATGGTGGT+TGG 0.483288 4_2:-18224418 None:intergenic
CCACCTTGTTGATCATGACT+TGG 0.484194 4_2:-18229409 None:intergenic
GGTAGTAGTTATGCAACAAA+TGG 0.489305 4_2:+18221230 Msa0592710:CDS
CATCTTTATTTGCGTCTGGA+TGG 0.490868 4_2:-18223525 None:intergenic
AAATAAAGAAAGCTTACTAT+GGG 0.491279 4_2:+18222278 Msa0592710:CDS
ACGAGCAAGGTGAGTGAAGA+AGG 0.493360 4_2:-18221027 None:intergenic
TGCCTCCGAAACCACCACTT+TGG 0.495412 4_2:-18224724 None:intergenic
TTCATAACCACCTTCTGACC+AGG 0.495792 4_2:-18228434 None:intergenic
CTGACAATTTGTTTATAAGT+GGG 0.501625 4_2:+18224350 Msa0592710:CDS
CTTACACTTCCAGTAAAAGA+TGG 0.501677 4_2:-18228093 None:intergenic
AATGACGGGTGGCCCGATAA+CGG 0.503386 4_2:-18224484 None:intergenic
CCACTTATAAACAAATTGTC+AGG 0.506003 4_2:-18224349 None:intergenic
GTCAAGTTGCATACTTATCC+AGG 0.507111 4_2:+18226328 Msa0592710:CDS
ATATCAAGTAGTGTTTCAAA+GGG 0.507204 4_2:+18221172 Msa0592710:CDS
TGTAAGCGATGCAAAGGGTC+AGG 0.507844 4_2:+18225805 Msa0592710:CDS
CACTTATGTTACTCTTCAAG+TGG 0.510109 4_2:-18229500 None:intergenic
GAAGTTTCAAGAAGTTACAT+TGG 0.513562 4_2:+18223564 Msa0592710:CDS
TTCCCACATCGGTTAGGAGT+TGG 0.515774 4_2:+18224326 Msa0592710:CDS
CCACGGAACATCTGCTCGAA+AGG 0.515788 4_2:-18224761 None:intergenic
GGTCAGAAGGTGGTTATGAA+AGG 0.517582 4_2:+18228437 Msa0592710:CDS
TACAAAACTTCATCAGCAAG+TGG 0.518395 4_2:-18229436 None:intergenic
GATAACGGAAACCTGACAAC+AGG 0.520597 4_2:-18224469 None:intergenic
CGAACTATTTCAGGTGGGAG+TGG 0.521446 4_2:+18225754 Msa0592710:intron
TTGATTGAATAGGTGAATTG+GGG 0.521791 4_2:-18220946 None:intergenic
ACCACTTTGGTTGTTTACAT+AGG 0.523371 4_2:-18224711 None:intergenic
ATGTTACTCTTCAAGTGGAA+GGG 0.528146 4_2:-18229495 None:intergenic
GACAATTTGTTTATAAGTGG+GGG 0.529431 4_2:+18224352 Msa0592710:CDS
CCCCACAAAACCGGCTTGTG+AGG 0.530091 4_2:-18224384 None:intergenic
TGTGGTTGAACTATCTTTCA+CGG 0.532096 4_2:+18225556 Msa0592710:CDS
TGTTACTCTTCAAGTGGAAG+GGG 0.539110 4_2:-18229494 None:intergenic
TCGATGTTGTGCGTGGTGTA+CGG 0.540123 4_2:-18220804 None:intergenic
AGTGGTGGTTTCGGAGGCAA+TGG 0.540722 4_2:+18224728 Msa0592710:CDS
AAAACGTCAACAGTATGATC+AGG 0.540871 4_2:+18223718 Msa0592710:CDS
TGATCTATATGCTACTATCA+AGG 0.542920 4_2:+18226788 Msa0592710:CDS
GAGTGAGACTTGCACAACTT+CGG 0.544421 4_2:-18229624 None:intergenic
AGGCACCCAACCTGGTCAGA+AGG 0.545297 4_2:+18228424 Msa0592710:CDS
TATGTTACTCTTCAAGTGGA+AGG 0.547299 4_2:-18229496 None:intergenic
CTACCAATAACAGTAGATGA+TGG 0.550722 4_2:-18221212 None:intergenic
TTGCAACCATAGCTAAAACT+AGG 0.552609 4_2:+18229674 Msa0592710:three_prime_UTR
GTCAGAAGGTGGTTATGAAA+GGG 0.553713 4_2:+18228438 Msa0592710:CDS
AAGTACTTGTGCTACATGCA+AGG 0.554627 4_2:+18225946 Msa0592710:CDS
AATAAATACTTTCAAATATG+GGG 0.554683 4_2:+18229030 Msa0592710:CDS
GCAATCCTCACCTCACAAGC+CGG 0.556045 4_2:+18224374 Msa0592710:CDS
TGACAATTTGTTTATAAGTG+GGG 0.556196 4_2:+18224351 Msa0592710:CDS
ACTAGATCTATTCATGGCTC+GGG 0.557340 4_2:+18221890 Msa0592710:CDS
GAAACTTGTAAGCGATGCAA+AGG 0.557844 4_2:+18225799 Msa0592710:CDS
AAAGGGAAAGGTATAATGAA+AGG 0.559368 4_2:+18228455 Msa0592710:CDS
GTTCACCCAGGCACCCAACC+TGG 0.563029 4_2:+18228416 Msa0592710:CDS
TAACCACCTTCTGACCAGGT+TGG 0.563337 4_2:-18228430 None:intergenic
ACCCTAAAGGTACATGGAGG+TGG 0.565389 4_2:+18226735 Msa0592710:CDS
AAGCGAGGATGAGTTACAGT+TGG 0.568587 4_2:-18220839 None:intergenic
TGTCCACTTGCAGTTAGACA+TGG 0.569909 4_2:+18221812 Msa0592710:intron
GGTGGTTTCGGAGGCAATGG+TGG 0.572038 4_2:+18224731 Msa0592710:CDS
CTAAAGGTACATGGAGGTGG+TGG 0.575599 4_2:+18226738 Msa0592710:CDS
TCTTTCACGGAAGCTATCCA+AGG 0.575784 4_2:+18225569 Msa0592710:CDS
GAACTGGTTGCTATTGGGAG+CGG 0.575920 4_2:+18221847 Msa0592710:CDS
ACATACTGGAATATTCAGAA+TGG 0.577711 4_2:+18225922 Msa0592710:CDS
TGATACCATATTAGAAATGG+TGG 0.580067 4_2:-18224422 None:intergenic
TCTGTTTGGCAGGTTCACCC+AGG 0.583768 4_2:+18228404 Msa0592710:intron
CAAGGTGCCAAAGTTGTCAA+AGG 0.589611 4_2:+18226295 Msa0592710:CDS
GGCCAACTCCTAACCGATGT+GGG 0.592730 4_2:-18224328 None:intergenic
GAAGCGTGAACATAAATGAC+GGG 0.593029 4_2:-18224498 None:intergenic
ATTTGGCGGAGAAGATGTCA+AGG 0.593689 4_2:+18225446 Msa0592710:CDS
AGTTTCTGCAAGTCTTGCCA+AGG 0.595904 4_2:+18226277 Msa0592710:CDS
AACCAAAGTGGTGGTTTCGG+AGG 0.598376 4_2:+18224722 Msa0592710:CDS
TTACACTTCCAGTAAAAGAT+GGG 0.600490 4_2:-18228092 None:intergenic
CATTTCCTCAAATTAATTAG+GGG 0.600742 4_2:+18220890 Msa0592710:five_prime_UTR
AAACTTGTAAGCGATGCAAA+GGG 0.601982 4_2:+18225800 Msa0592710:CDS
ATGTGTAATCCTGAGCGTGA+GGG 0.603118 4_2:+18224523 Msa0592710:CDS
CCTTTCGAGCAGATGTTCCG+TGG 0.604194 4_2:+18224761 Msa0592710:CDS
TCTAGTAGAACCGGGAAGCG+AGG 0.604603 4_2:-18220854 None:intergenic
AAGGTGGTTATGAAAGGGAA+AGG 0.605101 4_2:+18228443 Msa0592710:CDS
GATAGTAGCATATAGATCAC+CGG 0.605615 4_2:-18226784 None:intergenic
TAGCTAAAACTAGGAGTCGA+TGG 0.606931 4_2:+18229683 Msa0592710:three_prime_UTR
AACGGAAACCTGACAACAGG+TGG 0.610801 4_2:-18224466 None:intergenic
AGACAACAATGAGACCCTAA+AGG 0.610897 4_2:+18226722 Msa0592710:CDS
CGCAAATAAAGATGATCCTG+AGG 0.611520 4_2:+18223534 Msa0592710:CDS
GATGTGTAATCCTGAGCGTG+AGG 0.614095 4_2:+18224522 Msa0592710:CDS
AGTACTTGTGCTACATGCAA+GGG 0.618060 4_2:+18225947 Msa0592710:CDS
AATGAGACCCTAAAGGTACA+TGG 0.619370 4_2:+18226729 Msa0592710:CDS
TGGAAGATTCTAGTAGAACC+GGG 0.621429 4_2:-18220862 None:intergenic
TGAAGCGTGAACATAAATGA+CGG 0.621745 4_2:-18224499 None:intergenic
TTATGTTAAGATTCCCACAT+CGG 0.628187 4_2:+18224315 Msa0592710:intron
AGGCCAACTCCTAACCGATG+TGG 0.628484 4_2:-18224329 None:intergenic
CAAAACCGGCTTGTGAGGTG+AGG 0.628959 4_2:-18224379 None:intergenic
GAAAGAGTGATCGACGAGCA+AGG 0.630240 4_2:-18221040 None:intergenic
GTGAAGAAGGTGATGCCAGT+AGG 0.632661 4_2:-18221014 None:intergenic
GGTGGCCCATAATCGTGAAG+AGG 0.641994 4_2:-18224448 None:intergenic
CACCCAACCTGGTCAGAAGG+TGG 0.643969 4_2:+18228427 Msa0592710:CDS
CTTTCACGGAAGCTATCCAA+GGG 0.653887 4_2:+18225570 Msa0592710:CDS
CCAAGTCATGATCAACAAGG+TGG 0.658811 4_2:+18229409 Msa0592710:three_prime_UTR
TTCGAGCAGATGTTCCGTGG+TGG 0.661342 4_2:+18224764 Msa0592710:CDS
ATTGATCGAAGAGTTTGCCA+AGG 0.666715 4_2:+18229300 Msa0592710:CDS
TGTGTAATCCTGAGCGTGAG+GGG 0.666846 4_2:+18224524 Msa0592710:CDS
CGATGGTTTGTGAGTCACTG+AGG 0.668795 4_2:+18229700 Msa0592710:three_prime_UTR
AAATAAATAATGAAAAGTGG+AGG 0.670191 4_2:-18229378 None:intergenic
CAAGTCATGATCAACAAGGT+GGG 0.670214 4_2:+18229410 Msa0592710:three_prime_UTR
TATGTAAACAACCAAAGTGG+TGG 0.673516 4_2:+18224713 Msa0592710:CDS
GCGTGAACATAAATGACGGG+TGG 0.678302 4_2:-18224495 None:intergenic
ACAAAACTTCATCAGCAAGT+GGG 0.681064 4_2:-18229435 None:intergenic
GCGATGCAAAGGGTCAGGAG+TGG 0.682796 4_2:+18225810 Msa0592710:CDS
GTGTAATCCTGAGCGTGAGG+GGG 0.684416 4_2:+18224525 Msa0592710:CDS
AAGTCATTACATGGCCACCA+CGG 0.693473 4_2:-18224778 None:intergenic
TCGTCTGTCGATGTTGTGCG+TGG 0.695651 4_2:-18220811 None:intergenic
AATAAAGAAAGCTTACTATG+GGG 0.700800 4_2:+18222279 Msa0592710:CDS
TAGCATATAGATCACCGGAA+CGG 0.711908 4_2:-18226779 None:intergenic
AGAAGGATTAGATGTTCACG+TGG 0.719072 4_2:+18226929 Msa0592710:CDS
TATCAAGTAGTGTTTCAAAG+GGG 0.720594 4_2:+18221173 Msa0592710:CDS
GCCTATGTAAACAACCAAAG+TGG 0.723719 4_2:+18224710 Msa0592710:CDS
GATGTGCTTTGTAATGCTTG+TGG 0.726079 4_2:+18225620 Msa0592710:CDS
CCAGTAGGACGAATCATTTG+GGG 0.727748 4_2:-18220999 None:intergenic
GAGACCCTAAAGGTACATGG+AGG 0.766540 4_2:+18226732 Msa0592710:CDS
TTACCAAGTCATGATCAACA+AGG 0.774589 4_2:+18229406 Msa0592710:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATTACTTTTTTTTTTTTG+TGG + chr4_2:18221262-18221281 Msa0592710:intron 10.0%
!!! AATTACTTTTTTTTTTTTGT+GGG + chr4_2:18221263-18221282 Msa0592710:intron 10.0%
!! TTTAGTAAAAAATAAAAACA+TGG - chr4_2:18221368-18221387 None:intergenic 10.0%
!!! TATATGATTACTTTATTTTT+AGG - chr4_2:18222421-18222440 None:intergenic 10.0%
!! ATAAAAATTGATTAAAAACT+AGG + chr4_2:18222683-18222702 Msa0592710:intron 10.0%
!! TTAAAGTAAATTATTAGAAA+TGG - chr4_2:18224660-18224679 None:intergenic 10.0%
!! ATATTGAATTAAAAATATGA+TGG - chr4_2:18224984-18225003 None:intergenic 10.0%
!! AATTTATTTACAAAAAGTAA+GGG - chr4_2:18226131-18226150 None:intergenic 10.0%
!!! GTCATTAATTTATAATTTTT+AGG + chr4_2:18227066-18227085 Msa0592710:intron 10.0%
!!! ATTTTATTACAAATTTAACT+TGG + chr4_2:18227844-18227863 Msa0592710:intron 10.0%
!!! TAAGGTTTTTTTTTTTTTTT+TGG - chr4_2:18228679-18228698 None:intergenic 10.0%
!!! AAAAAATTTCATTTTTTTGC+AGG + chr4_2:18221148-18221167 Msa0592710:intron 15.0%
!!! TTAGCTATTATTTTTTATCT+GGG - chr4_2:18221435-18221454 None:intergenic 15.0%
!!! TTTAGCTATTATTTTTTATC+TGG - chr4_2:18221436-18221455 None:intergenic 15.0%
!! TTTGATTCAAAATTGAAATT+AGG + chr4_2:18222751-18222770 Msa0592710:intron 15.0%
!! ATTGTATAACATAGTATTTA+TGG - chr4_2:18223287-18223306 None:intergenic 15.0%
!!! ATTTTCATTTTAATGTTTGT+AGG + chr4_2:18223679-18223698 Msa0592710:intron 15.0%
!! TATTTAACTCTTAAAAATCA+TGG - chr4_2:18225200-18225219 None:intergenic 15.0%
!! ATAATATTAGATTCGTATTT+GGG - chr4_2:18225371-18225390 None:intergenic 15.0%
!! AATAATATTAGATTCGTATT+TGG - chr4_2:18225372-18225391 None:intergenic 15.0%
!! GATCATAAAGATTATTAATA+TGG - chr4_2:18225530-18225549 None:intergenic 15.0%
!! GAATTTATTTACAAAAAGTA+AGG - chr4_2:18226132-18226151 None:intergenic 15.0%
!! AAAGATACGATAAAATAATT+AGG - chr4_2:18227355-18227374 None:intergenic 15.0%
!!! TCGTATCTTTTATTTAATTT+TGG + chr4_2:18227365-18227384 Msa0592710:intron 15.0%
!!! CGTATCTTTTATTTAATTTT+GGG + chr4_2:18227366-18227385 Msa0592710:intron 15.0%
!!! GTTATTTTATCATAATACTT+TGG + chr4_2:18227896-18227915 Msa0592710:intron 15.0%
!!! TTGTTTTAAAAATTTGTTTC+AGG + chr4_2:18228044-18228063 Msa0592710:intron 15.0%
!!! TTTTAGTCAATAATAGTATT+AGG - chr4_2:18228192-18228211 None:intergenic 15.0%
!!! ATTATTGACTAAAATTCATA+TGG + chr4_2:18228198-18228217 Msa0592710:intron 15.0%
!!! AATTTCCTTATTTCATTATA+AGG - chr4_2:18228656-18228675 None:intergenic 15.0%
!! GAATAAATACTTTCAAATAT+GGG + chr4_2:18229029-18229048 Msa0592710:CDS 15.0%
!! AATAAATACTTTCAAATATG+GGG + chr4_2:18229030-18229049 Msa0592710:CDS 15.0%
!! ACTAAATAAATAATGAAAAG+TGG - chr4_2:18229384-18229403 None:intergenic 15.0%
!!! TTTGAAGATTTTGATTGAAT+AGG - chr4_2:18220959-18220978 None:intergenic 20.0%
!! TTTACTTTGTATGAACTATA+TGG + chr4_2:18221109-18221128 Msa0592710:intron 20.0%
!! TATATGGTTTAACAAATTTG+TGG + chr4_2:18221125-18221144 Msa0592710:intron 20.0%
!!! TTTTTACTAAAGATCCAATT+TGG + chr4_2:18221377-18221396 Msa0592710:intron 20.0%
!!! CTATTTTAGATGTTATTTCT+TGG + chr4_2:18221559-18221578 Msa0592710:intron 20.0%
!! ATTGTAAGAAAAACAAGAAA+AGG - chr4_2:18221693-18221712 None:intergenic 20.0%
!!! AAAGCTTAACAACATTTTTT+CGG - chr4_2:18221742-18221761 None:intergenic 20.0%
!! AAAAAAAAAAAAGCAAGACA+TGG - chr4_2:18221943-18221962 None:intergenic 20.0%
!!! ATAGTAAGCTTTCTTTATTT+CGG - chr4_2:18222278-18222297 None:intergenic 20.0%
!! AAATAAAGAAAGCTTACTAT+GGG + chr4_2:18222278-18222297 Msa0592710:CDS 20.0%
!! TGAATCTATGTATTGAAATA+TGG + chr4_2:18222331-18222350 Msa0592710:intron 20.0%
!! GAATCTATGTATTGAAATAT+GGG + chr4_2:18222332-18222351 Msa0592710:intron 20.0%
!! ATCTATACCTATATATCAAA+GGG - chr4_2:18223080-18223099 None:intergenic 20.0%
!! AACAAAGTTTCAAAGAAAAT+AGG - chr4_2:18223759-18223778 None:intergenic 20.0%
!! ATTCTAATGAATGAAAAAAG+TGG + chr4_2:18223855-18223874 Msa0592710:intron 20.0%
!!! AATAGTATGATTTAAGTTGT+TGG + chr4_2:18223910-18223929 Msa0592710:intron 20.0%
!! TAACATAAATCAAATGAAAG+AGG - chr4_2:18224303-18224322 None:intergenic 20.0%
!! AAGTAAATTATTAGAAATGG+TGG - chr4_2:18224657-18224676 None:intergenic 20.0%
!!! TTAATTTTTCATGAATGTGT+AGG + chr4_2:18224676-18224695 Msa0592710:intron 20.0%
!! CATATAGAAGAAAATCAATA+TGG - chr4_2:18226021-18226040 None:intergenic 20.0%
!! TAAAGTGAAATATGACTATA+TGG + chr4_2:18226213-18226232 Msa0592710:intron 20.0%
!! AAAGTGAAATATGACTATAT+GGG + chr4_2:18226214-18226233 Msa0592710:intron 20.0%
!!! GGTTTTTAATTTTTTGTTGT+TGG + chr4_2:18226248-18226267 Msa0592710:intron 20.0%
!! AATTCGAAATAATAATTACC+TGG - chr4_2:18226349-18226368 None:intergenic 20.0%
!!! TTTCTTTATGTCATTTGAAT+TGG + chr4_2:18226538-18226557 Msa0592710:intron 20.0%
!! ACTAAAATTAAATACACACA+TGG - chr4_2:18227048-18227067 None:intergenic 20.0%
!!! ATAAGAGTAAATATCGATTT+TGG + chr4_2:18227123-18227142 Msa0592710:intron 20.0%
!!! AAACACATTTTCAAAATAGT+GGG + chr4_2:18228260-18228279 Msa0592710:intron 20.0%
!!! ATTTTTTGGGAAAATACATT+TGG + chr4_2:18228524-18228543 Msa0592710:intron 20.0%
!! AAAACCTTAAATTTAATTGC+CGG + chr4_2:18228690-18228709 Msa0592710:intron 20.0%
!! AAAAAACATTTGACAGAATT+TGG + chr4_2:18228748-18228767 Msa0592710:intron 20.0%
!! AAAAACATTTGACAGAATTT+GGG + chr4_2:18228749-18228768 Msa0592710:intron 20.0%
!! GGAATAAATACTTTCAAATA+TGG + chr4_2:18229028-18229047 Msa0592710:intron 20.0%
!! AAATAAATAATGAAAAGTGG+AGG - chr4_2:18229381-18229400 None:intergenic 20.0%
!!! ATGAAAGTACAAAAAGAATT+GGG - chr4_2:18229655-18229674 None:intergenic 20.0%
!!! AATGAAAGTACAAAAAGAAT+TGG - chr4_2:18229656-18229675 None:intergenic 20.0%
! TAATTTGAGGAAATGGAAAT+TGG - chr4_2:18220885-18220904 None:intergenic 25.0%
! TCCATTTCCTCAAATTAATT+AGG + chr4_2:18220888-18220907 Msa0592710:five_prime_UTR 25.0%
! CCATTTCCTCAAATTAATTA+GGG + chr4_2:18220889-18220908 Msa0592710:five_prime_UTR 25.0%
! CATTTCCTCAAATTAATTAG+GGG + chr4_2:18220890-18220909 Msa0592710:five_prime_UTR 25.0%
!! AAAAACCCCTAATTAATTTG+AGG - chr4_2:18220898-18220917 None:intergenic 25.0%
!! AATTAATTAGGGGTTTTTCT+AGG + chr4_2:18220900-18220919 Msa0592710:five_prime_UTR 25.0%
!! ATTAATTAGGGGTTTTTCTA+GGG + chr4_2:18220901-18220920 Msa0592710:five_prime_UTR 25.0%
! TTTGATTGAATAGGTGAATT+GGG - chr4_2:18220950-18220969 None:intergenic 25.0%
!!! TTTTGATTGAATAGGTGAAT+TGG - chr4_2:18220951-18220970 None:intergenic 25.0%
! TATATCAAGTAGTGTTTCAA+AGG + chr4_2:18221171-18221190 Msa0592710:CDS 25.0%
! ATATCAAGTAGTGTTTCAAA+GGG + chr4_2:18221172-18221191 Msa0592710:CDS 25.0%
!!! TTTTGGTGGTATAGTTATTT+TGG + chr4_2:18221630-18221649 Msa0592710:intron 25.0%
!!! TGTTTGTGTTATTTATAGCT+TGG + chr4_2:18222028-18222047 Msa0592710:intron 25.0%
! GAAATAAAGAAAGCTTACTA+TGG + chr4_2:18222277-18222296 Msa0592710:CDS 25.0%
! AATAAAGAAAGCTTACTATG+GGG + chr4_2:18222279-18222298 Msa0592710:CDS 25.0%
! TCATGTATTTGACAATTATG+AGG - chr4_2:18222314-18222333 None:intergenic 25.0%
!! GTAATCATATATTTTGTGAG+TGG + chr4_2:18222430-18222449 Msa0592710:intron 25.0%
!! TTTTATTGGGTGAAATACAT+GGG + chr4_2:18222887-18222906 Msa0592710:intron 25.0%
! CATCTATACCTATATATCAA+AGG - chr4_2:18223081-18223100 None:intergenic 25.0%
!! TGGTTTTCATCAGATTATAT+AGG + chr4_2:18223147-18223166 Msa0592710:intron 25.0%
! TAAGATAGATATCTGACTTT+GGG - chr4_2:18223625-18223644 None:intergenic 25.0%
! TTAAGATAGATATCTGACTT+TGG - chr4_2:18223626-18223645 None:intergenic 25.0%
!!! TTAATGTTTGTAGGTTTTGA+AGG + chr4_2:18223688-18223707 Msa0592710:intron 25.0%
! TATATCTGAGTTTAGTGAAA+AGG - chr4_2:18223798-18223817 None:intergenic 25.0%
! AATGTGAAGTTTAATGCATA+TGG + chr4_2:18223883-18223902 Msa0592710:intron 25.0%
! AGTAGCTCAAAATAAATTTC+CGG - chr4_2:18223952-18223971 None:intergenic 25.0%
! AAGAAGAAAACTTCAATACT+AGG + chr4_2:18224081-18224100 Msa0592710:intron 25.0%
!!! TGTATTTGTTTCTATGTTTG+TGG + chr4_2:18224180-18224199 Msa0592710:intron 25.0%
!! TGTTTGTGTATTTTATTGAG+TGG + chr4_2:18224249-18224268 Msa0592710:intron 25.0%
!! GTTTGTGTATTTTATTGAGT+GGG + chr4_2:18224250-18224269 Msa0592710:intron 25.0%
!! CTGACAATTTGTTTATAAGT+GGG + chr4_2:18224350-18224369 Msa0592710:CDS 25.0%
!! TGACAATTTGTTTATAAGTG+GGG + chr4_2:18224351-18224370 Msa0592710:CDS 25.0%
!! CTGACAATTTGTTTATAAGT+GGG + chr4_2:18224350-18224369 Msa0592710:CDS 25.0%
!! TGACAATTTGTTTATAAGTG+GGG + chr4_2:18224351-18224370 Msa0592710:CDS 25.0%
! AATTATTAGAAATGGTGGTT+GGG - chr4_2:18224652-18224671 None:intergenic 25.0%
! AAATTATTAGAAATGGTGGT+TGG - chr4_2:18224653-18224672 None:intergenic 25.0%
!! CATATTTTGTCAAAAGAAAC+TGG + chr4_2:18224906-18224925 Msa0592710:intron 25.0%
! TAAAAATATGATGGTTGTGT+AGG - chr4_2:18224975-18224994 None:intergenic 25.0%
! ATGAACATGTGTTTATAAGT+GGG + chr4_2:18225127-18225146 Msa0592710:intron 25.0%
! AACTCTTAAAAATCATGGTT+GGG - chr4_2:18225195-18225214 None:intergenic 25.0%
! TAACTCTTAAAAATCATGGT+TGG - chr4_2:18225196-18225215 None:intergenic 25.0%
! AAATTGTAAACTGATACACT+TGG + chr4_2:18225236-18225255 Msa0592710:intron 25.0%
!! TTATTTCTCAATTCCTTTCA+TGG + chr4_2:18225387-18225406 Msa0592710:intron 25.0%
!!! AGCTTTTTCCATCAAAAATT+TGG + chr4_2:18225429-18225448 Msa0592710:CDS 25.0%
!! TTTTTCCATCAAAAATTTGG+CGG + chr4_2:18225432-18225451 Msa0592710:CDS 25.0%
!!! TGTTTGAAATGACAAAGTTT+TGG - chr4_2:18225600-18225619 None:intergenic 25.0%
! TACATTACAAGTTACAACAA+TGG - chr4_2:18226381-18226400 None:intergenic 25.0%
!! ATTGTTGTAACTTGTAATGT+AGG + chr4_2:18226380-18226399 Msa0592710:intron 25.0%
! AAGTTTGACAGAAATCAATA+TGG - chr4_2:18226457-18226476 None:intergenic 25.0%
!!! ATATTGATTTCTGTCAAACT+TGG + chr4_2:18226456-18226475 Msa0592710:intron 25.0%
! CCTTGAAAGAAATAATAAGA+GGG - chr4_2:18226654-18226673 None:intergenic 25.0%
! ACCTTGAAAGAAATAATAAG+AGG - chr4_2:18226655-18226674 None:intergenic 25.0%
!!! TATGATTTTTTCCATTTGCA+GGG + chr4_2:18226697-18226716 Msa0592710:intron 25.0%
! TTAGGAATTATCTTGCTTAT+CGG + chr4_2:18227084-18227103 Msa0592710:intron 25.0%
!! GAAAAAAGTACACAAATCAA+TGG + chr4_2:18227196-18227215 Msa0592710:intron 25.0%
!! ATCAATGGTTTTCTATTGTT+TGG + chr4_2:18227211-18227230 Msa0592710:intron 25.0%
! AAAAAAAGTGATAGGAAAGA+GGG - chr4_2:18227522-18227541 None:intergenic 25.0%
! TTAAGAGGAAAAAAAGTGAT+AGG - chr4_2:18227530-18227549 None:intergenic 25.0%
!!! CTTTTTTTCCTCTTAATTTC+TGG + chr4_2:18227534-18227553 Msa0592710:intron 25.0%
! TGAAAGTAAACTACAACTTA+GGG - chr4_2:18227603-18227622 None:intergenic 25.0%
! ATGAAAGTAAACTACAACTT+AGG - chr4_2:18227604-18227623 None:intergenic 25.0%
! TGTATAACGATTTAAGTCAA+TGG - chr4_2:18227634-18227653 None:intergenic 25.0%
! TATTACAATAGATAATCGAG+AGG + chr4_2:18228134-18228153 Msa0592710:intron 25.0%
! ATGGATTCTACAAGTTTATA+TGG + chr4_2:18228217-18228236 Msa0592710:intron 25.0%
! TGGATTCTACAAGTTTATAT+GGG + chr4_2:18228218-18228237 Msa0592710:intron 25.0%
!! GAAACACATTTTCAAAATAG+TGG + chr4_2:18228259-18228278 Msa0592710:intron 25.0%
! AAACCTTAAATTTAATTGCC+GGG + chr4_2:18228691-18228710 Msa0592710:intron 25.0%
! ACACCGTAAAATTTCAAAAT+AGG + chr4_2:18228861-18228880 Msa0592710:intron 25.0%
! CACCGTAAAATTTCAAAATA+GGG + chr4_2:18228862-18228881 Msa0592710:intron 25.0%
! ACCGTAAAATTTCAAAATAG+GGG + chr4_2:18228863-18228882 Msa0592710:intron 25.0%
!!! GTCTTGTTTTTTCTTTTAAC+AGG + chr4_2:18229007-18229026 Msa0592710:intron 25.0%
! ATATTATGAGAAACTTACGT+CGG - chr4_2:18229085-18229104 None:intergenic 25.0%
!! AGTTTCTCATAATATTTTGC+AGG + chr4_2:18229090-18229109 Msa0592710:intron 25.0%
!! GTTTCTCATAATATTTTGCA+GGG + chr4_2:18229091-18229110 Msa0592710:intron 25.0%
! TTTCTAACATGGTTATTGAA+CGG - chr4_2:18229245-18229264 None:intergenic 25.0%
! CTGTAAAAACATTTCTAACA+TGG - chr4_2:18229256-18229275 None:intergenic 25.0%
!! TTTTGTAGGTGCATTAATTA+AGG + chr4_2:18229452-18229471 Msa0592710:three_prime_UTR 25.0%
! TTTGTAGGTGCATTAATTAA+GGG + chr4_2:18229453-18229472 Msa0592710:three_prime_UTR 25.0%
!! AATTAAGGGTTCACTATTTT+AGG + chr4_2:18229467-18229486 Msa0592710:three_prime_UTR 25.0%
! CCCTAATTAATTTGAGGAAA+TGG - chr4_2:18220892-18220911 None:intergenic 30.0%
TTGATTGAATAGGTGAATTG+GGG - chr4_2:18220949-18220968 None:intergenic 30.0%
AAGAAGAAGAAAGATGTGTA+CGG - chr4_2:18221078-18221097 None:intergenic 30.0%
TATCAAGTAGTGTTTCAAAG+GGG + chr4_2:18221173-18221192 Msa0592710:CDS 30.0%
AATCCATCATCTACTGTTAT+TGG + chr4_2:18221209-18221228 Msa0592710:CDS 30.0%
CTATGAAACAAAAATACTCC+CGG + chr4_2:18221300-18221319 Msa0592710:intron 30.0%
TATGAAACAAAAATACTCCC+GGG + chr4_2:18221301-18221320 Msa0592710:intron 30.0%
AAAATTACGAAGGACCAAAT+TGG - chr4_2:18221394-18221413 None:intergenic 30.0%
! AGTCGTTGACATTTTTATAC+AGG + chr4_2:18221457-18221476 Msa0592710:intron 30.0%
! GTCGTTGACATTTTTATACA+GGG + chr4_2:18221458-18221477 Msa0592710:intron 30.0%
! TCGTTGACATTTTTATACAG+GGG + chr4_2:18221459-18221478 Msa0592710:intron 30.0%
TTTGACACGTTATAAACAGA+GGG - chr4_2:18221494-18221513 None:intergenic 30.0%
! TTTTGACACGTTATAAACAG+AGG - chr4_2:18221495-18221514 None:intergenic 30.0%
!! TTTAGATGTTATTTCTTGGC+TGG + chr4_2:18221563-18221582 Msa0592710:intron 30.0%
!! TTAGATGTTATTTCTTGGCT+GGG + chr4_2:18221564-18221583 Msa0592710:intron 30.0%
GAAAATTGTGAGGAACAAAT+TGG + chr4_2:18221604-18221623 Msa0592710:intron 30.0%
!!! GAGGAACAAATTGGATTTTT+TGG + chr4_2:18221613-18221632 Msa0592710:intron 30.0%
!!! GAACAAATTGGATTTTTTGG+TGG + chr4_2:18221616-18221635 Msa0592710:intron 30.0%
!!! GTGGTATAGTTATTTTGGAA+AGG + chr4_2:18221635-18221654 Msa0592710:intron 30.0%
!!! CAACATTTTTTCGGAAAAGA+TGG - chr4_2:18221733-18221752 None:intergenic 30.0%
! ATGGTGTTAATTTGAAGAAC+TGG + chr4_2:18221831-18221850 Msa0592710:CDS 30.0%
AAAAAAAAAGCAAGACATGG+AGG - chr4_2:18221940-18221959 None:intergenic 30.0%
TTTATTGCTCATGAAATCAC+AGG + chr4_2:18221969-18221988 Msa0592710:intron 30.0%
TTATTGCTCATGAAATCACA+GGG + chr4_2:18221970-18221989 Msa0592710:intron 30.0%
ACTACTTTCTATTGCATACT+AGG + chr4_2:18222060-18222079 Msa0592710:intron 30.0%
AAGAAGTTTAACAACGCAAT+GGG - chr4_2:18222383-18222402 None:intergenic 30.0%
! AAGCTTAATTTTTGCCATGA+TGG - chr4_2:18222599-18222618 None:intergenic 30.0%
GTATTTCACCCAATAAAAGA+GGG - chr4_2:18222885-18222904 None:intergenic 30.0%
TGTATTTCACCCAATAAAAG+AGG - chr4_2:18222886-18222905 None:intergenic 30.0%
! CTTTTATTGGGTGAAATACA+TGG + chr4_2:18222886-18222905 Msa0592710:intron 30.0%
!!! AAGTCCATCATTTTAGAACT+AGG - chr4_2:18222931-18222950 None:intergenic 30.0%
TTCATTCAAACTCTTGAGTA+GGG - chr4_2:18223035-18223054 None:intergenic 30.0%
TACTCAAGAGTTTGAATGAA+GGG + chr4_2:18223035-18223054 Msa0592710:intron 30.0%
GTTTGAATGAAGGGTAAATT+TGG + chr4_2:18223044-18223063 Msa0592710:intron 30.0%
ATGGTATCCCTTTGATATAT+AGG + chr4_2:18223070-18223089 Msa0592710:intron 30.0%
! CACATTTGCGATTTTTGATA+CGG + chr4_2:18223105-18223124 Msa0592710:intron 30.0%
AGTTCATGTCAAAGAAGAAA+GGG - chr4_2:18223340-18223359 None:intergenic 30.0%
AAGTTCATGTCAAAGAAGAA+AGG - chr4_2:18223341-18223360 None:intergenic 30.0%
!! TGACATGAACTTTTTAAGCA+AGG + chr4_2:18223349-18223368 Msa0592710:intron 30.0%
GAAGTTTCAAGAAGTTACAT+TGG + chr4_2:18223564-18223583 Msa0592710:CDS 30.0%
ATACCAGCAGTCATTAATTT+GGG - chr4_2:18223659-18223678 None:intergenic 30.0%
TATACCAGCAGTCATTAATT+TGG - chr4_2:18223660-18223679 None:intergenic 30.0%
TGAAGTTTAATGCATATGGA+GGG + chr4_2:18223887-18223906 Msa0592710:intron 30.0%
ACTTGATAGAGAAAGAAAGA+CGG + chr4_2:18223969-18223988 Msa0592710:intron 30.0%
!!! GTTTTAGTTTTGCTTTCTTG+TGG + chr4_2:18224015-18224034 Msa0592710:intron 30.0%
TTATGTTAAGATTCCCACAT+CGG + chr4_2:18224315-18224334 Msa0592710:intron 30.0%
CCACTTATAAACAAATTGTC+AGG - chr4_2:18224352-18224371 None:intergenic 30.0%
! CCTGACAATTTGTTTATAAG+TGG + chr4_2:18224349-18224368 Msa0592710:CDS 30.0%
! GACAATTTGTTTATAAGTGG+GGG + chr4_2:18224352-18224371 Msa0592710:CDS 30.0%
TGATACCATATTAGAAATGG+TGG - chr4_2:18224425-18224444 None:intergenic 30.0%
CTCTGATACCATATTAGAAA+TGG - chr4_2:18224428-18224447 None:intergenic 30.0%
CCACTTATAAACAAATTGTC+AGG - chr4_2:18224352-18224371 None:intergenic 30.0%
! CCTGACAATTTGTTTATAAG+TGG + chr4_2:18224349-18224368 Msa0592710:CDS 30.0%
! GACAATTTGTTTATAAGTGG+GGG + chr4_2:18224352-18224371 Msa0592710:CDS 30.0%
! TTTTTCATGAATGTGTAGGT+TGG + chr4_2:18224680-18224699 Msa0592710:intron 30.0%
ATCTTGTTAATCAAGCTTTC+AGG + chr4_2:18224818-18224837 Msa0592710:intron 30.0%
GTAATCAAACAGATCTAAAC+AGG - chr4_2:18225074-18225093 None:intergenic 30.0%
ACTGTTAAAGAGTTCCAAAT+TGG + chr4_2:18225092-18225111 Msa0592710:intron 30.0%
CATGAACATGTGTTTATAAG+TGG + chr4_2:18225126-18225145 Msa0592710:intron 30.0%
! CGTATTTGGGATTAATTTGA+CGG - chr4_2:18225358-18225377 None:intergenic 30.0%
AGACATTATTAAGCATGCTA+AGG + chr4_2:18225488-18225507 Msa0592710:intron 30.0%
GACATTATTAAGCATGCTAA+GGG + chr4_2:18225489-18225508 Msa0592710:intron 30.0%
AGAATACAAAATACCAGTGA+AGG - chr4_2:18225676-18225695 None:intergenic 30.0%
! ACTGGTATTTTGTATTCTGT+TGG + chr4_2:18225678-18225697 Msa0592710:intron 30.0%
! CTGGTATTTTGTATTCTGTT+GGG + chr4_2:18225679-18225698 Msa0592710:intron 30.0%
ACATACTGGAATATTCAGAA+TGG + chr4_2:18225922-18225941 Msa0592710:CDS 30.0%
AAGTTAACAGGTAATGACTA+TGG - chr4_2:18226170-18226189 None:intergenic 30.0%
AGTCATTACCTGTTAACTTA+TGG + chr4_2:18226171-18226190 Msa0592710:intron 30.0%
TACCTGTTAACTTATGGATA+TGG + chr4_2:18226177-18226196 Msa0592710:intron 30.0%
GAGTTTATGTGTGTATTCTT+TGG - chr4_2:18226574-18226593 None:intergenic 30.0%
TTGTATTTATTCTCTGCTGT+TGG + chr4_2:18226621-18226640 Msa0592710:intron 30.0%
! CCCTCTTATTATTTCTTTCA+AGG + chr4_2:18226651-18226670 Msa0592710:intron 30.0%
!!! GTATGATTTTTTCCATTTGC+AGG + chr4_2:18226696-18226715 Msa0592710:intron 30.0%
TGATCTATATGCTACTATCA+AGG + chr4_2:18226788-18226807 Msa0592710:CDS 30.0%
!! TCTATACTTTTTGCAGGTTA+GGG + chr4_2:18226887-18226906 Msa0592710:intron 30.0%
!! AACGATTTTACTTGGTTTTC+TGG + chr4_2:18227003-18227022 Msa0592710:intron 30.0%
! TGTTTGGAACTTGAAGAAAA+AGG + chr4_2:18227227-18227246 Msa0592710:intron 30.0%
GTGAAGGAATTTGTAATGTT+TGG + chr4_2:18227252-18227271 Msa0592710:intron 30.0%
TAGGTTAGTATTGTAAGAGA+GGG - chr4_2:18227336-18227355 None:intergenic 30.0%
TTAGGTTAGTATTGTAAGAG+AGG - chr4_2:18227337-18227356 None:intergenic 30.0%
!!! GGGATATTATGTCATTTTGA+AGG + chr4_2:18227386-18227405 Msa0592710:intron 30.0%
GAAAGATGGTAAAAACTGAA+AGG - chr4_2:18227493-18227512 None:intergenic 30.0%
AAAGAGGGTAAAAAGAAAGA+TGG - chr4_2:18227507-18227526 None:intergenic 30.0%
GAAAAAAAGTGATAGGAAAG+AGG - chr4_2:18227523-18227542 None:intergenic 30.0%
!! TTACAAATTTAACTTGGCAG+TGG + chr4_2:18227850-18227869 Msa0592710:intron 30.0%
AAATAACCAGCACAAACAAA+AGG - chr4_2:18227883-18227902 None:intergenic 30.0%
CTGTAAATAACCTAAATAGC+TGG + chr4_2:18228009-18228028 Msa0592710:intron 30.0%
AACAAAAGTTCCAGCTATTT+AGG - chr4_2:18228022-18228041 None:intergenic 30.0%
!! AAATTTGTTTCAGGCGATTT+TGG + chr4_2:18228053-18228072 Msa0592710:intron 30.0%
!! AATTTGTTTCAGGCGATTTT+GGG + chr4_2:18228054-18228073 Msa0592710:intron 30.0%
TTACACTTCCAGTAAAAGAT+GGG - chr4_2:18228095-18228114 None:intergenic 30.0%
GAAAATGTGTTTCGCTATAT+AGG - chr4_2:18228252-18228271 None:intergenic 30.0%
TTTGAATGATGAGTTCTGTT+TGG + chr4_2:18228390-18228409 Msa0592710:intron 30.0%
! AAAGGGAAAGGTATAATGAA+AGG + chr4_2:18228455-18228474 Msa0592710:CDS 30.0%
! GTATGCAAGTTGACATTATT+TGG + chr4_2:18228477-18228496 Msa0592710:intron 30.0%
! CCTTATTTCATTATAAGGTC+TGG - chr4_2:18228651-18228670 None:intergenic 30.0%
CCAGACCTTATAATGAAATA+AGG + chr4_2:18228648-18228667 Msa0592710:intron 30.0%
AACCTTAAATTTAATTGCCG+GGG + chr4_2:18228692-18228711 Msa0592710:intron 30.0%
!!! ATCATATTTTAGCCTCTCAT+TGG + chr4_2:18228799-18228818 Msa0592710:intron 30.0%
!!! GCCCCTATTTTGAAATTTTA+CGG - chr4_2:18228867-18228886 None:intergenic 30.0%
! ATTGTAACTTGTAAGAGACA+TGG - chr4_2:18229169-18229188 None:intergenic 30.0%
AGCAAGAGAAATCAGATAAA+CGG + chr4_2:18229326-18229345 Msa0592710:CDS 30.0%
TTGGAAGATTCTAGTAGAAC+CGG - chr4_2:18220866-18220885 None:intergenic 35.0%
! TAGGTGAATTGGGGATTTTT+GGG - chr4_2:18220940-18220959 None:intergenic 35.0%
! ATAGGTGAATTGGGGATTTT+TGG - chr4_2:18220941-18220960 None:intergenic 35.0%
CATTTGGGGAATTGAATTGA+AGG - chr4_2:18220988-18221007 None:intergenic 35.0%
AAAGATGTGTACGGAATGAT+TGG - chr4_2:18221069-18221088 None:intergenic 35.0%
TAGTGTTTCAAAGGGGTTAT+AGG + chr4_2:18221180-18221199 Msa0592710:CDS 35.0%
CTACCAATAACAGTAGATGA+TGG - chr4_2:18221215-18221234 None:intergenic 35.0%
GGTAGTAGTTATGCAACAAA+TGG + chr4_2:18221230-18221249 Msa0592710:CDS 35.0%
ATGAAACAAAAATACTCCCG+GGG + chr4_2:18221302-18221321 Msa0592710:intron 35.0%
TAAAAACATGGTGCTCAATG+AGG - chr4_2:18221356-18221375 None:intergenic 35.0%
TTCATGACAGTTTCATTCAG+GGG - chr4_2:18221539-18221558 None:intergenic 35.0%
GTTCATGACAGTTTCATTCA+GGG - chr4_2:18221540-18221559 None:intergenic 35.0%
AGTTCATGACAGTTTCATTC+AGG - chr4_2:18221541-18221560 None:intergenic 35.0%
TTTGAAGAACTGGTTGCTAT+TGG + chr4_2:18221841-18221860 Msa0592710:CDS 35.0%
! TTGAAGAACTGGTTGCTATT+GGG + chr4_2:18221842-18221861 Msa0592710:CDS 35.0%
! GAGCGGCTAATTCATATTTT+GGG + chr4_2:18221864-18221883 Msa0592710:CDS 35.0%
! AGCGGCTAATTCATATTTTG+GGG + chr4_2:18221865-18221884 Msa0592710:CDS 35.0%
AACTAGATCTATTCATGGCT+CGG + chr4_2:18221889-18221908 Msa0592710:CDS 35.0%
CATACTAGGATAGTAGATGT+AGG + chr4_2:18222074-18222093 Msa0592710:intron 35.0%
ACGATGCTGCAAAATAGTTT+GGG - chr4_2:18222204-18222223 None:intergenic 35.0%
AACGATGCTGCAAAATAGTT+TGG - chr4_2:18222205-18222224 None:intergenic 35.0%
! AAACTATTTTGCAGCATCGT+TGG + chr4_2:18222204-18222223 Msa0592710:intron 35.0%
GAAGAAGTTTAACAACGCAA+TGG - chr4_2:18222384-18222403 None:intergenic 35.0%
TCAACCATTTCCTATGATGT+GGG + chr4_2:18222457-18222476 Msa0592710:intron 35.0%
! CTTAATTTTTGCCATGATGG+AGG - chr4_2:18222596-18222615 None:intergenic 35.0%
GAAATTAGGATACAACAACC+AGG + chr4_2:18222765-18222784 Msa0592710:intron 35.0%
! TCTAACACTCCCTCTTTTAT+TGG + chr4_2:18222873-18222892 Msa0592710:intron 35.0%
! CTAACACTCCCTCTTTTATT+GGG + chr4_2:18222874-18222893 Msa0592710:intron 35.0%
TGCATGTGTGTAACATCATT+TGG - chr4_2:18222959-18222978 None:intergenic 35.0%
! CTTTTCAACACTCGCTTATT+GGG - chr4_2:18222987-18223006 None:intergenic 35.0%
! TCTTTTCAACACTCGCTTAT+TGG - chr4_2:18222988-18223007 None:intergenic 35.0%
CTTCATTCAAACTCTTGAGT+AGG - chr4_2:18223036-18223055 None:intergenic 35.0%
CTACTCAAGAGTTTGAATGA+AGG + chr4_2:18223034-18223053 Msa0592710:intron 35.0%
TGAAGGGTAAATTTGGAAGA+TGG + chr4_2:18223051-18223070 Msa0592710:intron 35.0%
! GAGTTGTGTTTTATGTGTTC+TGG + chr4_2:18223127-18223146 Msa0592710:intron 35.0%
GAAGAAAGGGAAAAGGTAAA+GGG - chr4_2:18223327-18223346 None:intergenic 35.0%
AGAAGAAAGGGAAAAGGTAA+AGG - chr4_2:18223328-18223347 None:intergenic 35.0%
TGTCAAAGAAGAAAGGGAAA+AGG - chr4_2:18223334-18223353 None:intergenic 35.0%
AGAAGTTACATTGGCATATG+AGG + chr4_2:18223573-18223592 Msa0592710:CDS 35.0%
TATCCCAAATTAATGACTGC+TGG + chr4_2:18223653-18223672 Msa0592710:intron 35.0%
!!! TGTTTGTAGGTTTTGAAGGA+TGG + chr4_2:18223692-18223711 Msa0592710:intron 35.0%
!!! GTTTGTAGGTTTTGAAGGAT+GGG + chr4_2:18223693-18223712 Msa0592710:intron 35.0%
!!! TTTGTAGGTTTTGAAGGATG+GGG + chr4_2:18223694-18223713 Msa0592710:intron 35.0%
AAAACGTCAACAGTATGATC+AGG + chr4_2:18223718-18223737 Msa0592710:CDS 35.0%
GTGAAGTTTAATGCATATGG+AGG + chr4_2:18223886-18223905 Msa0592710:intron 35.0%
TTCTTTCCAATGAATCCTAG+GGG - chr4_2:18224066-18224085 None:intergenic 35.0%
CTTCTTTCCAATGAATCCTA+GGG - chr4_2:18224067-18224086 None:intergenic 35.0%
TCTTCTTTCCAATGAATCCT+AGG - chr4_2:18224068-18224087 None:intergenic 35.0%
CCATATTAGAAATGGTGGTT+GGG - chr4_2:18224420-18224439 None:intergenic 35.0%
ACCATATTAGAAATGGTGGT+TGG - chr4_2:18224421-18224440 None:intergenic 35.0%
TGAAGCGTGAACATAAATGA+CGG - chr4_2:18224502-18224521 None:intergenic 35.0%
ACCACTTTGGTTGTTTACAT+AGG - chr4_2:18224714-18224733 None:intergenic 35.0%
TATGTAAACAACCAAAGTGG+TGG + chr4_2:18224713-18224732 Msa0592710:CDS 35.0%
GAATGTAGCAAGTCATTACA+TGG - chr4_2:18224790-18224809 None:intergenic 35.0%
GTTCCAAATTGGACAAAAGA+TGG + chr4_2:18225103-18225122 Msa0592710:intron 35.0%
! ATGCCATCTTTTGTCCAATT+TGG - chr4_2:18225109-18225128 None:intergenic 35.0%
AATATCCTGATCACCATGAA+AGG - chr4_2:18225403-18225422 None:intergenic 35.0%
ATCTTTATGATCACAGACTG+TGG + chr4_2:18225538-18225557 Msa0592710:intron 35.0%
TGTGGTTGAACTATCTTTCA+CGG + chr4_2:18225556-18225575 Msa0592710:CDS 35.0%
! AGTGAGATGTGTTGATATCA+AGG - chr4_2:18225729-18225748 None:intergenic 35.0%
AAACTTGTAAGCGATGCAAA+GGG + chr4_2:18225800-18225819 Msa0592710:CDS 35.0%
TCAATTGAACAACACTTCTC+AGG - chr4_2:18225875-18225894 None:intergenic 35.0%
TTCCAGTATGTACAAACATC+TGG - chr4_2:18225913-18225932 None:intergenic 35.0%
GGGAACTGGAAAAATTGTAT+CGG + chr4_2:18225967-18225986 Msa0592710:CDS 35.0%
! CTGGAAAAATTGTATCGGTA+TGG + chr4_2:18225972-18225991 Msa0592710:intron 35.0%
TGTTCTTGTATCCATTTACG+TGG + chr4_2:18226080-18226099 Msa0592710:intron 35.0%
CACCATATCCATAAGTTAAC+AGG - chr4_2:18226182-18226201 None:intergenic 35.0%
CTGTTAACTTATGGATATGG+TGG + chr4_2:18226180-18226199 Msa0592710:intron 35.0%
ACTATATGGGAATGTACTGA+TGG + chr4_2:18226227-18226246 Msa0592710:intron 35.0%
CTTTGTTCCTTTGACAACTT+TGG - chr4_2:18226305-18226324 None:intergenic 35.0%
TAATGTAGGCCATGGTTATA+TGG + chr4_2:18226394-18226413 Msa0592710:intron 35.0%
CTTTGTATGCCATATAACCA+TGG - chr4_2:18226406-18226425 None:intergenic 35.0%
GATAGTAGCATATAGATCAC+CGG - chr4_2:18226787-18226806 None:intergenic 35.0%
!! CTTTCCTCTATACTTTTTGC+AGG + chr4_2:18226881-18226900 Msa0592710:intron 35.0%
! CTAACCTGCAAAAAGTATAG+AGG - chr4_2:18226888-18226907 None:intergenic 35.0%
!! CTCTATACTTTTTGCAGGTT+AGG + chr4_2:18226886-18226905 Msa0592710:intron 35.0%
!!! TGCTGTTTTAAGTTTCACTC+AGG + chr4_2:18226953-18226972 Msa0592710:CDS 35.0%
! TGTTGAGCAACGATTTTACT+TGG + chr4_2:18226995-18227014 Msa0592710:intron 35.0%
CTTGAAGAAAAAGGAAGTGA+AGG + chr4_2:18227236-18227255 Msa0592710:intron 35.0%
! GTAATGTTTGGCTCAACATA+AGG + chr4_2:18227264-18227283 Msa0592710:intron 35.0%
AGGTTAGTATTGTAAGAGAG+GGG - chr4_2:18227335-18227354 None:intergenic 35.0%
TTATCTTCTCTTGTGTGACT+GGG - chr4_2:18227452-18227471 None:intergenic 35.0%
TTTATCTTCTCTTGTGTGAC+TGG - chr4_2:18227453-18227472 None:intergenic 35.0%
ACAAGTGACCAGAAATTAAG+AGG - chr4_2:18227545-18227564 None:intergenic 35.0%
!! CTTAATTTCTGGTCACTTGT+AGG + chr4_2:18227545-18227564 Msa0592710:intron 35.0%
TCTAAAAGATTTGGCTGAGA+AGG - chr4_2:18227579-18227598 None:intergenic 35.0%
!! ACTTAGGGCTCTAAAAGATT+TGG - chr4_2:18227588-18227607 None:intergenic 35.0%
!! AATTTTGTTTGCCACCTTCA+GGG + chr4_2:18227787-18227806 Msa0592710:intron 35.0%
GTAAAGTCAATATTCCCTGA+AGG - chr4_2:18227804-18227823 None:intergenic 35.0%
! ACTTGTTAGCTGTTTGTGTA+AGG + chr4_2:18227960-18227979 Msa0592710:intron 35.0%
! ATTTGTTTCAGGCGATTTTG+GGG + chr4_2:18228055-18228074 Msa0592710:intron 35.0%
CTTACACTTCCAGTAAAAGA+TGG - chr4_2:18228096-18228115 None:intergenic 35.0%
!! CATCTTTTACTGGAAGTGTA+AGG + chr4_2:18228094-18228113 Msa0592710:CDS 35.0%
GTCAACAGTAGAAAAAGTGA+TGG + chr4_2:18228299-18228318 Msa0592710:intron 35.0%
! TTTTGGCATATCTAGTGACT+AGG + chr4_2:18228363-18228382 Msa0592710:intron 35.0%
GATAGCGAGAAATATCAATG+TGG + chr4_2:18228559-18228578 Msa0592710:intron 35.0%
!! TATAAGGTCTGGTTCTATAG+TGG - chr4_2:18228640-18228659 None:intergenic 35.0%
ACCTTAAATTTAATTGCCGG+GGG + chr4_2:18228693-18228712 Msa0592710:intron 35.0%
!!! GGGTTTTAATTGGGTAGTTT+AGG + chr4_2:18228713-18228732 Msa0592710:intron 35.0%
GGTCGTTCATAACACTTATT+TGG + chr4_2:18228908-18228927 Msa0592710:intron 35.0%
TAGATGCGTGTTTCAGTAAA+CGG + chr4_2:18228966-18228985 Msa0592710:intron 35.0%
TCAATTCACGATGCAGAAAA+TGG + chr4_2:18229194-18229213 Msa0592710:intron 35.0%
TTACCAAGTCATGATCAACA+AGG + chr4_2:18229406-18229425 Msa0592710:three_prime_UTR 35.0%
ACAAAACTTCATCAGCAAGT+GGG - chr4_2:18229438-18229457 None:intergenic 35.0%
TACAAAACTTCATCAGCAAG+TGG - chr4_2:18229439-18229458 None:intergenic 35.0%
!! ACTTGCTGATGAAGTTTTGT+AGG + chr4_2:18229438-18229457 Msa0592710:three_prime_UTR 35.0%
!! AAGGGTTCACTATTTTAGGT+TGG + chr4_2:18229471-18229490 Msa0592710:three_prime_UTR 35.0%
ATGTTACTCTTCAAGTGGAA+GGG - chr4_2:18229498-18229517 None:intergenic 35.0%
TATGTTACTCTTCAAGTGGA+AGG - chr4_2:18229499-18229518 None:intergenic 35.0%
CACTTATGTTACTCTTCAAG+TGG - chr4_2:18229503-18229522 None:intergenic 35.0%
TTGCAACCATAGCTAAAACT+AGG + chr4_2:18229674-18229693 Msa0592710:three_prime_UTR 35.0%
TGGAAGATTCTAGTAGAACC+GGG - chr4_2:18220865-18220884 None:intergenic 40.0%
!!! TTGGGGATTTTTGGGATGAA+TGG - chr4_2:18220932-18220951 None:intergenic 40.0%
GAGTCGCGATAAAATTACGA+AGG - chr4_2:18221404-18221423 None:intergenic 40.0%
! GGAGCGGCTAATTCATATTT+TGG + chr4_2:18221863-18221882 Msa0592710:CDS 40.0%
ACTAGATCTATTCATGGCTC+GGG + chr4_2:18221890-18221909 Msa0592710:CDS 40.0%
CAACTATGCACAAGAAAGCA+AGG - chr4_2:18222140-18222159 None:intergenic 40.0%
AGGAGCTATTACGATGTTCT+TGG + chr4_2:18222229-18222248 Msa0592710:CDS 40.0%
AAGAAAGCTTACTATGGGGT+AGG + chr4_2:18222283-18222302 Msa0592710:intron 40.0%
CTCAACCATTTCCTATGATG+TGG + chr4_2:18222456-18222475 Msa0592710:intron 40.0%
TCATCCCACATCATAGGAAA+TGG - chr4_2:18222464-18222483 None:intergenic 40.0%
ACACTGACCTGTTATTCTGT+CGG + chr4_2:18222547-18222566 Msa0592710:intron 40.0%
AGAAAAGCCGACAGAATAAC+AGG - chr4_2:18222557-18222576 None:intergenic 40.0%
! CTTTTCTCGAATACCATAGC+TGG + chr4_2:18222570-18222589 Msa0592710:intron 40.0%
!! AGCGAGTGTTGAAAAGAGAT+TGG + chr4_2:18222991-18223010 Msa0592710:intron 40.0%
TCAAGCCCTATTACACTAAG+TGG + chr4_2:18223236-18223255 Msa0592710:intron 40.0%
CAAGCCCTATTACACTAAGT+GGG + chr4_2:18223237-18223256 Msa0592710:intron 40.0%
AAGCCCTATTACACTAAGTG+GGG + chr4_2:18223238-18223257 Msa0592710:intron 40.0%
!!! AAGGCTTGGTTTTTGGTTGT+TGG + chr4_2:18223451-18223470 Msa0592710:intron 40.0%
TCTTTGCAAGCTGCAGAATA+TGG - chr4_2:18223501-18223520 None:intergenic 40.0%
! CATCTTTATTTGCGTCTGGA+TGG - chr4_2:18223528-18223547 None:intergenic 40.0%
! GGATCATCTTTATTTGCGTC+TGG - chr4_2:18223532-18223551 None:intergenic 40.0%
CGCAAATAAAGATGATCCTG+AGG + chr4_2:18223534-18223553 Msa0592710:CDS 40.0%
! TGAAACTTCTTTTCAGCCTC+AGG - chr4_2:18223553-18223572 None:intergenic 40.0%
! TAAGTTGTTGGCCTCTTTCA+TGG + chr4_2:18223922-18223941 Msa0592710:intron 40.0%
TGATAGAGAAAGAAAGACGG+AGG + chr4_2:18223972-18223991 Msa0592710:intron 40.0%
GATAGAGAAAGAAAGACGGA+GGG + chr4_2:18223973-18223992 Msa0592710:intron 40.0%
TCTTTCCAATGAATCCTAGG+GGG - chr4_2:18224065-18224084 None:intergenic 40.0%
TGAAAGAGGCAGTAGATACT+GGG - chr4_2:18224289-18224308 None:intergenic 40.0%
ATGAAAGAGGCAGTAGATAC+TGG - chr4_2:18224290-18224309 None:intergenic 40.0%
! TTAAGATTCCCACATCGGTT+AGG + chr4_2:18224320-18224339 Msa0592710:intron 40.0%
CCCAACCACCATTTCTAATA+TGG + chr4_2:18224417-18224436 Msa0592710:CDS 40.0%
TGTTGTCAGGTTTCCGTTAT+CGG + chr4_2:18224471-18224490 Msa0592710:CDS 40.0%
GAAGCGTGAACATAAATGAC+GGG - chr4_2:18224501-18224520 None:intergenic 40.0%
GCCTATGTAAACAACCAAAG+TGG + chr4_2:18224710-18224729 Msa0592710:CDS 40.0%
AACAACCAAAGTGGTGGTTT+CGG + chr4_2:18224719-18224738 Msa0592710:CDS 40.0%
ATGGTTGTGTAGGATTGCTT+AGG - chr4_2:18224965-18224984 None:intergenic 40.0%
CTAACACAACCCCACAAAAT+CGG - chr4_2:18225171-18225190 None:intergenic 40.0%
CAATTCCTTTCATGGTGATC+AGG + chr4_2:18225395-18225414 Msa0592710:intron 40.0%
! CTTCTCCGCCAAATTTTTGA+TGG - chr4_2:18225440-18225459 None:intergenic 40.0%
GATGTGCTTTGTAATGCTTG+TGG + chr4_2:18225620-18225639 Msa0592710:CDS 40.0%
TATGAATTGTCGTCCTTCAC+TGG + chr4_2:18225660-18225679 Msa0592710:intron 40.0%
!!! CAAGTTTCAGGTTTTGTACC+AGG - chr4_2:18225787-18225806 None:intergenic 40.0%
TTGCATCGCTTACAAGTTTC+AGG - chr4_2:18225799-18225818 None:intergenic 40.0%
GAAACTTGTAAGCGATGCAA+AGG + chr4_2:18225799-18225818 Msa0592710:CDS 40.0%
GTCCAGATGTTTGTACATAC+TGG + chr4_2:18225908-18225927 Msa0592710:intron 40.0%
AAGTACTTGTGCTACATGCA+AGG + chr4_2:18225946-18225965 Msa0592710:CDS 40.0%
AGTACTTGTGCTACATGCAA+GGG + chr4_2:18225947-18225966 Msa0592710:CDS 40.0%
! GTCAAGTTGCATACTTATCC+AGG + chr4_2:18226328-18226347 Msa0592710:CDS 40.0%
! GTAACTTGTAATGTAGGCCA+TGG + chr4_2:18226386-18226405 Msa0592710:intron 40.0%
TTGTTGTCTATCCCTGCAAA+TGG - chr4_2:18226711-18226730 None:intergenic 40.0%
AGACAACAATGAGACCCTAA+AGG + chr4_2:18226722-18226741 Msa0592710:CDS 40.0%
! AATGAGACCCTAAAGGTACA+TGG + chr4_2:18226729-18226748 Msa0592710:CDS 40.0%
TAGCATATAGATCACCGGAA+CGG - chr4_2:18226782-18226801 None:intergenic 40.0%
AATCCTTCTCTGCGAAAAAC+AGG - chr4_2:18226918-18226937 None:intergenic 40.0%
AGAAGGATTAGATGTTCACG+TGG + chr4_2:18226929-18226948 Msa0592710:CDS 40.0%
CGCTCATTTCAAACATCACA+GGG - chr4_2:18227150-18227169 None:intergenic 40.0%
TCGCTCATTTCAAACATCAC+AGG - chr4_2:18227151-18227170 None:intergenic 40.0%
! ATGTTTGGCTCAACATAAGG+TGG + chr4_2:18227267-18227286 Msa0592710:intron 40.0%
! AGTGATTTTTCTGCAACCTC+TGG - chr4_2:18227300-18227319 None:intergenic 40.0%
AGATTTGGCTGAGAAGGAAT+TGG - chr4_2:18227573-18227592 None:intergenic 40.0%
ACTTAGACATCTCAACTCCA+TGG - chr4_2:18227679-18227698 None:intergenic 40.0%
ATGGAGTTGAGATGTCTAAG+TGG + chr4_2:18227678-18227697 Msa0592710:intron 40.0%
AGGTACACACATACTACTGA+AGG - chr4_2:18227710-18227729 None:intergenic 40.0%
GTGTACCTCTTGATCTATTG+AGG + chr4_2:18227722-18227741 Msa0592710:intron 40.0%
AAGGTCCTCAATAGATCAAG+AGG - chr4_2:18227730-18227749 None:intergenic 40.0%
GATCTATTGAGGACCTTTGT+AGG + chr4_2:18227733-18227752 Msa0592710:intron 40.0%
!! GAATTTTGTTTGCCACCTTC+AGG + chr4_2:18227786-18227805 Msa0592710:intron 40.0%
AAGTCAATATTCCCTGAAGG+TGG - chr4_2:18227801-18227820 None:intergenic 40.0%
! TTTGTTTCAGGCGATTTTGG+GGG + chr4_2:18228056-18228075 Msa0592710:intron 40.0%
! ATTGAGGTCCCATCTTTTAC+TGG + chr4_2:18228084-18228103 Msa0592710:CDS 40.0%
! TACTGGAAGTGTAAGGCTTA+AGG + chr4_2:18228101-18228120 Msa0592710:CDS 40.0%
! AATAGATAATCGAGAGGTGC+TGG + chr4_2:18228140-18228159 Msa0592710:intron 40.0%
AATGATGAGTTCTGTTTGGC+AGG + chr4_2:18228394-18228413 Msa0592710:intron 40.0%
GTCAGAAGGTGGTTATGAAA+GGG + chr4_2:18228438-18228457 Msa0592710:CDS 40.0%
AAGGTGGTTATGAAAGGGAA+AGG + chr4_2:18228443-18228462 Msa0592710:CDS 40.0%
ACCCCCGGCAATTAAATTTA+AGG - chr4_2:18228697-18228716 None:intergenic 40.0%
!! TAATTGCCGGGGGTTTTAAT+TGG + chr4_2:18228703-18228722 Msa0592710:intron 40.0%
!!! AATTGCCGGGGGTTTTAATT+GGG + chr4_2:18228704-18228723 Msa0592710:intron 40.0%
AACTACCCAATTAAAACCCC+CGG - chr4_2:18228712-18228731 None:intergenic 40.0%
! TATCTTCTGTTGCGTTTTCG+TGG + chr4_2:18228887-18228906 Msa0592710:intron 40.0%
! GGATCTCTTGATTCGTGATT+TGG + chr4_2:18229215-18229234 Msa0592710:intron 40.0%
ATTGATCGAAGAGTTTGCCA+AGG + chr4_2:18229300-18229319 Msa0592710:CDS 40.0%
TGATTTCTCTTGCTCTTCCT+TGG - chr4_2:18229320-18229339 None:intergenic 40.0%
AGATAAACGGAAAGCTGCTT+CGG + chr4_2:18229339-18229358 Msa0592710:CDS 40.0%
CAAGTCATGATCAACAAGGT+GGG + chr4_2:18229410-18229429 Msa0592710:three_prime_UTR 40.0%
TGTTACTCTTCAAGTGGAAG+GGG - chr4_2:18229497-18229516 None:intergenic 40.0%
!!! TCGACTCCTAGTTTTAGCTA+TGG - chr4_2:18229683-18229702 None:intergenic 40.0%
TAGCTAAAACTAGGAGTCGA+TGG + chr4_2:18229683-18229702 Msa0592710:three_prime_UTR 40.0%
AAGCGAGGATGAGTTACAGT+TGG - chr4_2:18220842-18220861 None:intergenic 45.0%
CCAGTAGGACGAATCATTTG+GGG - chr4_2:18221002-18221021 None:intergenic 45.0%
GCCAGTAGGACGAATCATTT+GGG - chr4_2:18221003-18221022 None:intergenic 45.0%
TGCCAGTAGGACGAATCATT+TGG - chr4_2:18221004-18221023 None:intergenic 45.0%
ACAAAAATACTCCCGGGGTT+AGG + chr4_2:18221307-18221326 Msa0592710:intron 45.0%
TTTCTTGGCTGGGACTGAAT+TGG + chr4_2:18221574-18221593 Msa0592710:intron 45.0%
TTCTTGGCTGGGACTGAATT+GGG + chr4_2:18221575-18221594 Msa0592710:intron 45.0%
TGGGCTGCTAGAAAATTGTG+AGG + chr4_2:18221594-18221613 Msa0592710:intron 45.0%
TCTAACTGCAAGTGGACAAG+GGG - chr4_2:18221810-18221829 None:intergenic 45.0%
GTCTAACTGCAAGTGGACAA+GGG - chr4_2:18221811-18221830 None:intergenic 45.0%
TGTCTAACTGCAAGTGGACA+AGG - chr4_2:18221812-18221831 None:intergenic 45.0%
TGTCCACTTGCAGTTAGACA+TGG + chr4_2:18221812-18221831 Msa0592710:intron 45.0%
ACACCATGTCTAACTGCAAG+TGG - chr4_2:18221818-18221837 None:intergenic 45.0%
GGGGCAACTAGATCTATTCA+TGG + chr4_2:18221884-18221903 Msa0592710:CDS 45.0%
! ATTTTGCAGCATCGTTGGCA+AGG + chr4_2:18222209-18222228 Msa0592710:intron 45.0%
! CGATGTTCTTGGTGTGAGTA+AGG + chr4_2:18222240-18222259 Msa0592710:CDS 45.0%
! CAGGTCTTATCCCACTAAGT+GGG + chr4_2:18222784-18222803 Msa0592710:intron 45.0%
! AGGTCTTATCCCACTAAGTG+GGG + chr4_2:18222785-18222804 Msa0592710:intron 45.0%
AAAAGCTGACCCCACTTAGT+GGG - chr4_2:18222797-18222816 None:intergenic 45.0%
TAGAACTAGGCCCCTCAAAT+TGG - chr4_2:18222918-18222937 None:intergenic 45.0%
!! GGGGCCTAGTTCTAAAATGA+TGG + chr4_2:18222924-18222943 Msa0592710:intron 45.0%
CGACCCCACTTAGTGTAATA+GGG - chr4_2:18223244-18223263 None:intergenic 45.0%
CCTATTACACTAAGTGGGGT+CGG + chr4_2:18223242-18223261 Msa0592710:intron 45.0%
! AAGCCTTATCCCACTAAGTG+GGG - chr4_2:18223438-18223457 None:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+GGG - chr4_2:18223439-18223458 None:intergenic 45.0%
!! GTGGGATAAGGCTTGGTTTT+TGG + chr4_2:18223444-18223463 Msa0592710:intron 45.0%
TTTCCGGATCTCCATGAAAG+AGG - chr4_2:18223936-18223955 None:intergenic 45.0%
CTCTGTTTACATTTCCCCCT+AGG + chr4_2:18224048-18224067 Msa0592710:intron 45.0%
CATTTCCCCCTAGGATTCAT+TGG + chr4_2:18224057-18224076 Msa0592710:intron 45.0%
CTAACACAACCCCACAAAAC+CGG - chr4_2:18224396-18224415 None:intergenic 45.0%
TCAGAGCCTCTTCACGATTA+TGG + chr4_2:18224442-18224461 Msa0592710:CDS 45.0%
CAGAGCCTCTTCACGATTAT+GGG + chr4_2:18224443-18224462 Msa0592710:CDS 45.0%
!! GATAACGGAAACCTGACAAC+AGG - chr4_2:18224472-18224491 None:intergenic 45.0%
GTTGTCAGGTTTCCGTTATC+GGG + chr4_2:18224472-18224491 Msa0592710:CDS 45.0%
ATGTGTAATCCTGAGCGTGA+GGG + chr4_2:18224523-18224542 Msa0592710:CDS 45.0%
GTGTGTTAAGAGTCCCACAT+CGG + chr4_2:18224547-18224566 Msa0592710:intron 45.0%
! TTAAGAGTCCCACATCGGTT+AGG + chr4_2:18224552-18224571 Msa0592710:intron 45.0%
CTAACACAACCCCACAAAAC+CGG - chr4_2:18224396-18224415 None:intergenic 45.0%
AAGTCATTACATGGCCACCA+CGG - chr4_2:18224781-18224800 None:intergenic 45.0%
TTGCTTAGGATCTGCTCGTA+TGG - chr4_2:18224951-18224970 None:intergenic 45.0%
! CGATTTTGTGGGGTTGTGTT+AGG + chr4_2:18225169-18225188 Msa0592710:intron 45.0%
ATTTGGCGGAGAAGATGTCA+AGG + chr4_2:18225446-18225465 Msa0592710:CDS 45.0%
TCTTTCACGGAAGCTATCCA+AGG + chr4_2:18225569-18225588 Msa0592710:CDS 45.0%
CTTTCACGGAAGCTATCCAA+GGG + chr4_2:18225570-18225589 Msa0592710:CDS 45.0%
!! ACAAAGTTTTGGTGCACCCT+TGG - chr4_2:18225589-18225608 None:intergenic 45.0%
CACTGTTGCCGAACTATTTC+AGG + chr4_2:18225745-18225764 Msa0592710:intron 45.0%
TGTTGCCGAACTATTTCAGG+TGG + chr4_2:18225748-18225767 Msa0592710:intron 45.0%
! GTTGCCGAACTATTTCAGGT+GGG + chr4_2:18225749-18225768 Msa0592710:intron 45.0%
CACTCCCACCTGAAATAGTT+CGG - chr4_2:18225756-18225775 None:intergenic 45.0%
!!! GTTTCAGGTTTTGTACCAGG+AGG - chr4_2:18225784-18225803 None:intergenic 45.0%
ACTGAAGACTGCCACGTAAA+TGG - chr4_2:18226094-18226113 None:intergenic 45.0%
AGTTTCTGCAAGTCTTGCCA+AGG + chr4_2:18226277-18226296 Msa0592710:CDS 45.0%
CTTTGACAACTTTGGCACCT+TGG - chr4_2:18226297-18226316 None:intergenic 45.0%
! CAAGGTGCCAAAGTTGTCAA+AGG + chr4_2:18226295-18226314 Msa0592710:CDS 45.0%
ACCACCTCCATGTACCTTTA+GGG - chr4_2:18226739-18226758 None:intergenic 45.0%
GATCCTGATTCAAACCGTTC+CGG + chr4_2:18226765-18226784 Msa0592710:CDS 45.0%
!! GATCCTGTTTTTCGCAGAGA+AGG + chr4_2:18226912-18226931 Msa0592710:CDS 45.0%
TGTGATCGAAGATAGCGCAA+GGG + chr4_2:18227174-18227193 Msa0592710:intron 45.0%
ATAAGGTGGTTTCTGTCCAG+AGG + chr4_2:18227281-18227300 Msa0592710:intron 45.0%
!! GCACACTGTGCAAGTTTTGA+TGG + chr4_2:18227760-18227779 Msa0592710:intron 45.0%
!! ACTGAGCCTTTTGTTTGTGC+TGG + chr4_2:18227874-18227893 Msa0592710:intron 45.0%
!! GATTTTGGGGGCAACTATTG+AGG + chr4_2:18228068-18228087 Msa0592710:CDS 45.0%
TTCATAACCACCTTCTGACC+AGG - chr4_2:18228437-18228456 None:intergenic 45.0%
GGTCAGAAGGTGGTTATGAA+AGG + chr4_2:18228437-18228456 Msa0592710:CDS 45.0%
! GATGTACATGTGTTGCTGCT+TGG + chr4_2:18228935-18228954 Msa0592710:intron 45.0%
ATTCACGCTGTCTTTCTGTC+AGG - chr4_2:18229282-18229301 None:intergenic 45.0%
CCACCTTGTTGATCATGACT+TGG - chr4_2:18229412-18229431 None:intergenic 45.0%
CCAAGTCATGATCAACAAGG+TGG + chr4_2:18229409-18229428 Msa0592710:three_prime_UTR 45.0%
GAGTGAGACTTGCACAACTT+CGG - chr4_2:18229627-18229646 None:intergenic 45.0%
!!! TTTGATTTAAAATTTAAATT+AGG + chr4_2:18222717-18222736 Msa0592710:intron 5.0%
!! AAAGAAATAATATTATATAA+AGG - chr4_2:18228346-18228365 None:intergenic 5.0%
!!! TTATATAATATTATTTCTTT+TGG + chr4_2:18228346-18228365 Msa0592710:intron 5.0%
!!! TTTTATTAAAAAACATTTTT+TGG + chr4_2:18228510-18228529 Msa0592710:intron 5.0%
!!! TTTATTAAAAAACATTTTTT+GGG + chr4_2:18228511-18228530 Msa0592710:intron 5.0%
TCGATGTTGTGCGTGGTGTA+CGG - chr4_2:18220807-18220826 None:intergenic 50.0%
TGTAACTCATCCTCGCTTCC+CGG + chr4_2:18220844-18220863 Msa0592710:five_prime_UTR 50.0%
CCCCAAATGATTCGTCCTAC+TGG + chr4_2:18220999-18221018 Msa0592710:exon 50.0%
GTGAAGAAGGTGATGCCAGT+AGG - chr4_2:18221017-18221036 None:intergenic 50.0%
ACGAGCAAGGTGAGTGAAGA+AGG - chr4_2:18221030-18221049 None:intergenic 50.0%
GAAAGAGTGATCGACGAGCA+AGG - chr4_2:18221043-18221062 None:intergenic 50.0%
TGAGGCACAAATCCGACACA+GGG - chr4_2:18221338-18221357 None:intergenic 50.0%
ATGAGGCACAAATCCGACAC+AGG - chr4_2:18221339-18221358 None:intergenic 50.0%
! GAACTGGTTGCTATTGGGAG+CGG + chr4_2:18221847-18221866 Msa0592710:CDS 50.0%
CCTCTCTCATCCCACATCAT+AGG - chr4_2:18222470-18222489 None:intergenic 50.0%
CCTATGATGTGGGATGAGAG+AGG + chr4_2:18222467-18222486 Msa0592710:intron 50.0%
CCACTTAGTGGGATAAGACC+TGG - chr4_2:18222786-18222805 None:intergenic 50.0%
! CCAGGTCTTATCCCACTAAG+TGG + chr4_2:18222783-18222802 Msa0592710:intron 50.0%
CAAAAGCTGACCCCACTTAG+TGG - chr4_2:18222798-18222817 None:intergenic 50.0%
ACATGGGTCCCACCAATTTG+AGG + chr4_2:18222903-18222922 Msa0592710:intron 50.0%
CATGGGTCCCACCAATTTGA+GGG + chr4_2:18222904-18222923 Msa0592710:intron 50.0%
ATGGGTCCCACCAATTTGAG+GGG + chr4_2:18222905-18222924 Msa0592710:intron 50.0%
ACTAGGCCCCTCAAATTGGT+GGG - chr4_2:18222914-18222933 None:intergenic 50.0%
AACTAGGCCCCTCAAATTGG+TGG - chr4_2:18222915-18222934 None:intergenic 50.0%
CCGACCCCACTTAGTGTAAT+AGG - chr4_2:18223245-18223264 None:intergenic 50.0%
TTATTGCCGACCCCACTTAG+TGG + chr4_2:18223425-18223444 Msa0592710:intron 50.0%
TATTGCCGACCCCACTTAGT+GGG + chr4_2:18223426-18223445 Msa0592710:intron 50.0%
CTTATCCCACTAAGTGGGGT+CGG - chr4_2:18222789-18222808 None:intergenic 50.0%
! CCAAGCCTTATCCCACTAAG+TGG - chr4_2:18223440-18223459 None:intergenic 50.0%
CCACTTAGTGGGATAAGGCT+TGG + chr4_2:18223437-18223456 Msa0592710:intron 50.0%
GCAAGCTGCAGAATATGGAG+AGG - chr4_2:18223496-18223515 None:intergenic 50.0%
TGGCCTCTTTCATGGAGATC+CGG + chr4_2:18223930-18223949 Msa0592710:intron 50.0%
! TTCCCACATCGGTTAGGAGT+TGG + chr4_2:18224326-18224345 Msa0592710:CDS 50.0%
!! ACCTCACAAGCCGGTTTTGT+GGG + chr4_2:18224383-18224402 Msa0592710:CDS 50.0%
!! CGGTTTTGTGGGGTTGTGTT+AGG + chr4_2:18224394-18224413 Msa0592710:CDS 50.0%
ATTATGGGCCACCTGTTGTC+AGG + chr4_2:18224458-18224477 Msa0592710:CDS 50.0%
AACGGAAACCTGACAACAGG+TGG - chr4_2:18224469-18224488 None:intergenic 50.0%
! GCGTGAACATAAATGACGGG+TGG - chr4_2:18224498-18224517 None:intergenic 50.0%
GATGTGTAATCCTGAGCGTG+AGG + chr4_2:18224522-18224541 Msa0592710:CDS 50.0%
TGTGTAATCCTGAGCGTGAG+GGG + chr4_2:18224524-18224543 Msa0592710:CDS 50.0%
!! ACCTCACAAGCCGGTTTTGT+GGG + chr4_2:18224383-18224402 Msa0592710:CDS 50.0%
!! CGGTTTTGTGGGGTTGTGTT+AGG + chr4_2:18224394-18224413 Msa0592710:CDS 50.0%
AACCAAAGTGGTGGTTTCGG+AGG + chr4_2:18224722-18224741 Msa0592710:CDS 50.0%
!! ACCCTACGAGCCGATTTTGT+GGG + chr4_2:18225158-18225177 Msa0592710:intron 50.0%
! CGAACTATTTCAGGTGGGAG+TGG + chr4_2:18225754-18225773 Msa0592710:intron 50.0%
TGTAAGCGATGCAAAGGGTC+AGG + chr4_2:18225805-18225824 Msa0592710:CDS 50.0%
AGGAGTGGTCAGTATCGTGT+TGG + chr4_2:18225825-18225844 Msa0592710:intron 50.0%
TGTGCTACATGCAAGGGAAC+TGG + chr4_2:18225953-18225972 Msa0592710:CDS 50.0%
! GAGACCCTAAAGGTACATGG+AGG + chr4_2:18226732-18226751 Msa0592710:CDS 50.0%
! ACCCTAAAGGTACATGGAGG+TGG + chr4_2:18226735-18226754 Msa0592710:CDS 50.0%
CACCACCTCCATGTACCTTT+AGG - chr4_2:18226740-18226759 None:intergenic 50.0%
! CTAAAGGTACATGGAGGTGG+TGG + chr4_2:18226738-18226757 Msa0592710:CDS 50.0%
TCACCGGAACGGTTTGAATC+AGG - chr4_2:18226771-18226790 None:intergenic 50.0%
GTGTGATCGAAGATAGCGCA+AGG + chr4_2:18227173-18227192 Msa0592710:intron 50.0%
! ACAGTGTGCTGCTCCTACAA+AGG - chr4_2:18227749-18227768 None:intergenic 50.0%
GGCATATCTAGTGACTAGGC+AGG + chr4_2:18228367-18228386 Msa0592710:intron 50.0%
AACCACCTTCTGACCAGGTT+GGG - chr4_2:18228432-18228451 None:intergenic 50.0%
TAACCACCTTCTGACCAGGT+TGG - chr4_2:18228433-18228452 None:intergenic 50.0%
CGCTACATGCAACTGCTTTG+GGG - chr4_2:18228595-18228614 None:intergenic 50.0%
CCGCTACATGCAACTGCTTT+GGG - chr4_2:18228596-18228615 None:intergenic 50.0%
CCCAAAGCAGTTGCATGTAG+CGG + chr4_2:18228593-18228612 Msa0592710:intron 50.0%
GGTTCTATAGTGGTCGCACT+GGG - chr4_2:18228630-18228649 None:intergenic 50.0%
! TGGTTCTATAGTGGTCGCAC+TGG - chr4_2:18228631-18228650 None:intergenic 50.0%
CTGTGTGACTCACCAATGAG+AGG - chr4_2:18228814-18228833 None:intergenic 50.0%
! CGATGGTTTGTGAGTCACTG+AGG + chr4_2:18229700-18229719 Msa0592710:three_prime_UTR 50.0%
TCGTCTGTCGATGTTGTGCG+TGG - chr4_2:18220814-18220833 None:intergenic 55.0%
TCTAGTAGAACCGGGAAGCG+AGG - chr4_2:18220857-18220876 None:intergenic 55.0%
GGTTAGGCGTATCCCTGTGT+CGG + chr4_2:18221323-18221342 Msa0592710:intron 55.0%
AACTGCAAGTGGACAAGGGG+AGG - chr4_2:18221807-18221826 None:intergenic 55.0%
! ACCATAGCTGGCCTCCATCA+TGG + chr4_2:18222582-18222601 Msa0592710:intron 55.0%
CGACCCCACTTAGTGGGATA+AGG + chr4_2:18223432-18223451 Msa0592710:intron 55.0%
GGCCAACTCCTAACCGATGT+GGG - chr4_2:18224331-18224350 None:intergenic 55.0%
AGGCCAACTCCTAACCGATG+TGG - chr4_2:18224332-18224351 None:intergenic 55.0%
GCAATCCTCACCTCACAAGC+CGG + chr4_2:18224374-18224393 Msa0592710:CDS 55.0%
!! CAAAACCGGCTTGTGAGGTG+AGG - chr4_2:18224382-18224401 None:intergenic 55.0%
!! CACCTCACAAGCCGGTTTTG+TGG + chr4_2:18224382-18224401 Msa0592710:CDS 55.0%
!! CCTCACAAGCCGGTTTTGTG+GGG + chr4_2:18224384-18224403 Msa0592710:CDS 55.0%
GGTGGCCCATAATCGTGAAG+AGG - chr4_2:18224451-18224470 None:intergenic 55.0%
!! AATGACGGGTGGCCCGATAA+CGG - chr4_2:18224487-18224506 None:intergenic 55.0%
GTGTAATCCTGAGCGTGAGG+GGG + chr4_2:18224525-18224544 Msa0592710:CDS 55.0%
! GTCCCACATCGGTTAGGAGT+TGG + chr4_2:18224558-18224577 Msa0592710:intron 55.0%
GGCCAACTCCTAACCGATGT+GGG - chr4_2:18224331-18224350 None:intergenic 55.0%
AGGCCAACTCCTAACCGATG+TGG - chr4_2:18224332-18224351 None:intergenic 55.0%
GCAATCCTCACCTCACAAGC+CGG + chr4_2:18224374-18224393 Msa0592710:CDS 55.0%
!! CAAAACCGGCTTGTGAGGTG+AGG - chr4_2:18224382-18224401 None:intergenic 55.0%
!! CACCTCACAAGCCGGTTTTG+TGG + chr4_2:18224382-18224401 Msa0592710:CDS 55.0%
!! CCTCACAAGCCGGTTTTGTG+GGG + chr4_2:18224384-18224403 Msa0592710:CDS 55.0%
TGCCTCCGAAACCACCACTT+TGG - chr4_2:18224727-18224746 None:intergenic 55.0%
AGTGGTGGTTTCGGAGGCAA+TGG + chr4_2:18224728-18224747 Msa0592710:CDS 55.0%
CCACGGAACATCTGCTCGAA+AGG - chr4_2:18224764-18224783 None:intergenic 55.0%
CCTTTCGAGCAGATGTTCCG+TGG + chr4_2:18224761-18224780 Msa0592710:CDS 55.0%
TTCGAGCAGATGTTCCGTGG+TGG + chr4_2:18224764-18224783 Msa0592710:CDS 55.0%
!! CAAAATCGGCTCGTAGGGTG+AGG - chr4_2:18225157-18225176 None:intergenic 55.0%
!! CACCCTACGAGCCGATTTTG+TGG + chr4_2:18225157-18225176 Msa0592710:intron 55.0%
!! CCCCACAAAATCGGCTCGTA+GGG - chr4_2:18225162-18225181 None:intergenic 55.0%
!! CCCTACGAGCCGATTTTGTG+GGG + chr4_2:18225159-18225178 Msa0592710:intron 55.0%
!! ACCCCACAAAATCGGCTCGT+AGG - chr4_2:18225163-18225182 None:intergenic 55.0%
TCTGTTTGGCAGGTTCACCC+AGG + chr4_2:18228404-18228423 Msa0592710:intron 55.0%
GCCGCTACATGCAACTGCTT+TGG - chr4_2:18228597-18228616 None:intergenic 55.0%
ACAGGGATACGCCTAACCCC+GGG - chr4_2:18221321-18221340 None:intergenic 60.0%
CACAGGGATACGCCTAACCC+CGG - chr4_2:18221322-18221341 None:intergenic 60.0%
TGCAAGTGGACAAGGGGAGG+AGG - chr4_2:18221804-18221823 None:intergenic 60.0%
! GCCATGATGGAGGCCAGCTA+TGG - chr4_2:18222586-18222605 None:intergenic 60.0%
!! CCCCACAAAACCGGCTTGTG+AGG - chr4_2:18224387-18224406 None:intergenic 60.0%
TAACACACCCCCTCACGCTC+AGG - chr4_2:18224535-18224554 None:intergenic 60.0%
!! CCCCACAAAACCGGCTTGTG+AGG - chr4_2:18224387-18224406 None:intergenic 60.0%
GGTGGTTTCGGAGGCAATGG+TGG + chr4_2:18224731-18224750 Msa0592710:CDS 60.0%
GCGATGCAAAGGGTCAGGAG+TGG + chr4_2:18225810-18225829 Msa0592710:CDS 60.0%
! CACATGCGAGCACTGCTCCA+TGG + chr4_2:18227659-18227678 Msa0592710:intron 60.0%
! TCTGACCAGGTTGGGTGCCT+GGG - chr4_2:18228424-18228443 None:intergenic 60.0%
! TTCTGACCAGGTTGGGTGCC+TGG - chr4_2:18228425-18228444 None:intergenic 60.0%
AGGCACCCAACCTGGTCAGA+AGG + chr4_2:18228424-18228443 Msa0592710:CDS 60.0%
CACCCAACCTGGTCAGAAGG+TGG + chr4_2:18228427-18228446 Msa0592710:CDS 60.0%
!! GCAACTGCTTTGGGGTCGCT+AGG - chr4_2:18228587-18228606 None:intergenic 60.0%
AGTGGTCGCACTGGGTGCTA+TGG - chr4_2:18228622-18228641 None:intergenic 60.0%
GGTGGGAGTGGTCTTCCTCC+TGG + chr4_2:18225766-18225785 Msa0592710:intron 65.0%
GTTCACCCAGGCACCCAACC+TGG + chr4_2:18228416-18228435 Msa0592710:CDS 65.0%
! GGTCGCACTGGGTGCTATGG+TGG - chr4_2:18228619-18228638 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 18220799 18229760 18220799 ID=Msa0592710;Name=Msa0592710
chr4_2 mRNA 18220799 18229760 18220799 ID=Msa0592710-mRNA-1;Parent=Msa0592710;Name=Msa0592710-mRNA-1;_AED=0.20;_eAED=0.20;_QI=206|0.88|0.94|0.94|1|1|19|388|516
chr4_2 exon 18220799 18221076 18220799 ID=Msa0592710-mRNA-1:exon:5268;Parent=Msa0592710-mRNA-1
chr4_2 exon 18221170 18221251 18221170 ID=Msa0592710-mRNA-1:exon:5269;Parent=Msa0592710-mRNA-1
chr4_2 exon 18221825 18221911 18221825 ID=Msa0592710-mRNA-1:exon:5270;Parent=Msa0592710-mRNA-1
chr4_2 exon 18222218 18222300 18222218 ID=Msa0592710-mRNA-1:exon:5271;Parent=Msa0592710-mRNA-1
chr4_2 exon 18223511 18223594 18223511 ID=Msa0592710-mRNA-1:exon:5272;Parent=Msa0592710-mRNA-1
chr4_2 exon 18223701 18223739 18223701 ID=Msa0592710-mRNA-1:exon:5273;Parent=Msa0592710-mRNA-1
chr4_2 exon 18224325 18224546 18224325 ID=Msa0592710-mRNA-1:exon:5274;Parent=Msa0592710-mRNA-1
chr4_2 exon 18224698 18224790 18224698 ID=Msa0592710-mRNA-1:exon:5275;Parent=Msa0592710-mRNA-1
chr4_2 exon 18225417 18225467 18225417 ID=Msa0592710-mRNA-1:exon:5276;Parent=Msa0592710-mRNA-1
chr4_2 exon 18225554 18225641 18225554 ID=Msa0592710-mRNA-1:exon:5277;Parent=Msa0592710-mRNA-1
chr4_2 exon 18225767 18225831 18225767 ID=Msa0592710-mRNA-1:exon:5278;Parent=Msa0592710-mRNA-1
chr4_2 exon 18225914 18225988 18225914 ID=Msa0592710-mRNA-1:exon:5279;Parent=Msa0592710-mRNA-1
chr4_2 exon 18226277 18226349 18226277 ID=Msa0592710-mRNA-1:exon:5280;Parent=Msa0592710-mRNA-1
chr4_2 exon 18226718 18226809 18226718 ID=Msa0592710-mRNA-1:exon:5281;Parent=Msa0592710-mRNA-1
chr4_2 exon 18226903 18226974 18226903 ID=Msa0592710-mRNA-1:exon:5282;Parent=Msa0592710-mRNA-1
chr4_2 exon 18228066 18228122 18228066 ID=Msa0592710-mRNA-1:exon:5283;Parent=Msa0592710-mRNA-1
chr4_2 exon 18228416 18228476 18228416 ID=Msa0592710-mRNA-1:exon:5284;Parent=Msa0592710-mRNA-1
chr4_2 exon 18229029 18229086 18229029 ID=Msa0592710-mRNA-1:exon:5285;Parent=Msa0592710-mRNA-1
chr4_2 exon 18229276 18229760 18229276 ID=Msa0592710-mRNA-1:exon:5286;Parent=Msa0592710-mRNA-1
chr4_2 five_prime_UTR 18220799 18221004 18220799 ID=Msa0592710-mRNA-1:five_prime_utr;Parent=Msa0592710-mRNA-1
chr4_2 CDS 18221005 18221076 18221005 ID=Msa0592710-mRNA-1:cds;Parent=Msa0592710-mRNA-1
chr4_2 CDS 18221170 18221251 18221170 ID=Msa0592710-mRNA-1:cds;Parent=Msa0592710-mRNA-1
chr4_2 CDS 18221825 18221911 18221825 ID=Msa0592710-mRNA-1:cds;Parent=Msa0592710-mRNA-1
chr4_2 CDS 18222218 18222300 18222218 ID=Msa0592710-mRNA-1:cds;Parent=Msa0592710-mRNA-1
chr4_2 CDS 18223511 18223594 18223511 ID=Msa0592710-mRNA-1:cds;Parent=Msa0592710-mRNA-1
chr4_2 CDS 18223701 18223739 18223701 ID=Msa0592710-mRNA-1:cds;Parent=Msa0592710-mRNA-1
chr4_2 CDS 18224325 18224546 18224325 ID=Msa0592710-mRNA-1:cds;Parent=Msa0592710-mRNA-1
chr4_2 CDS 18224698 18224790 18224698 ID=Msa0592710-mRNA-1:cds;Parent=Msa0592710-mRNA-1
chr4_2 CDS 18225417 18225467 18225417 ID=Msa0592710-mRNA-1:cds;Parent=Msa0592710-mRNA-1
chr4_2 CDS 18225554 18225641 18225554 ID=Msa0592710-mRNA-1:cds;Parent=Msa0592710-mRNA-1
chr4_2 CDS 18225767 18225831 18225767 ID=Msa0592710-mRNA-1:cds;Parent=Msa0592710-mRNA-1
chr4_2 CDS 18225914 18225988 18225914 ID=Msa0592710-mRNA-1:cds;Parent=Msa0592710-mRNA-1
chr4_2 CDS 18226277 18226349 18226277 ID=Msa0592710-mRNA-1:cds;Parent=Msa0592710-mRNA-1
chr4_2 CDS 18226718 18226809 18226718 ID=Msa0592710-mRNA-1:cds;Parent=Msa0592710-mRNA-1
chr4_2 CDS 18226903 18226974 18226903 ID=Msa0592710-mRNA-1:cds;Parent=Msa0592710-mRNA-1
chr4_2 CDS 18228066 18228122 18228066 ID=Msa0592710-mRNA-1:cds;Parent=Msa0592710-mRNA-1
chr4_2 CDS 18228416 18228476 18228416 ID=Msa0592710-mRNA-1:cds;Parent=Msa0592710-mRNA-1
chr4_2 CDS 18229029 18229086 18229029 ID=Msa0592710-mRNA-1:cds;Parent=Msa0592710-mRNA-1
chr4_2 CDS 18229276 18229372 18229276 ID=Msa0592710-mRNA-1:cds;Parent=Msa0592710-mRNA-1
chr4_2 three_prime_UTR 18229373 18229760 18229373 ID=Msa0592710-mRNA-1:three_prime_utr;Parent=Msa0592710-mRNA-1
Gene Sequence

>Msa0592710

ATGATTCGTCCTACTGGCATCACCTTCTTCACTCACCTTGCTCGTCGATCACTCTTTCGCGCCAATCATTCCGTATATCAAGTAGTGTTTCAAAGGGGTTATAGGACATTGAATCCATCATCTACTGTTATTGGTAGTAGTTATGCAACAAATGTTAGACATGGTGTTAATTTGAAGAACTGGTTGCTATTGGGAGCGGCTAATTCATATTTTGGGGCAACTAGATCTATTCATGGCTCGGCATCGTTGGCAAGGAGCTATTACGATGTTCTTGGTGTGAGTAAGGATGCAAGTTCTTCCGAAATAAAGAAAGCTTACTATGGGCTTGCAAAGAAGCTCCATCCAGACGCAAATAAAGATGATCCTGAGGCTGAAAAGAAGTTTCAAGAAGTTACATTGGCATATGAGGTTTTGAAGGATGGGGAAAAACGTCAACAGTATGATCAGATTCCCACATCGGTTAGGAGTTGGCCTGACAATTTGTTTATAAGTGGGGGCAATCCTCACCTCACAAGCCGGTTTTGTGGGGTTGTGTTAGGCCCAACCACCATTTCTAATATGGTATCAGAGCCTCTTCACGATTATGGGCCACCTGTTGTCAGGTTTCCGTTATCGGGCCACCCGTCATTTATGTTCACGCTTCAGATGTGTAATCCTGAGCGTGAGGGGGTTGGACATGATGCCTATGTAAACAACCAAAGTGGTGGTTTCGGAGGCAATGGTGGCTTTAATCCTTTCGAGCAGATGTTCCGTGGTGGCCATGATATTTTCAGCAGCTTTTTCCATCAAAAATTTGGCGGAGAAGATGTCAAGACTGTGGTTGAACTATCTTTCACGGAAGCTATCCAAGGGTGCACCAAAACTTTGTCATTTCAAACAGATGTGCTTTGTAATGCTTGTGGTGGGAGTGGTCTTCCTCCTGGTACAAAACCTGAAACTTGTAAGCGATGCAAAGGGTCAGGAGTGATGTTTGTACATACTGGAATATTCAGAATGGAAAGTACTTGTGCTACATGCAAGGGAACTGGAAAAATTGTATCGAGTTTCTGCAAGTCTTGCCAAGGTGCCAAAGTTGTCAAAGGAACAAAGTCAGTCAAGTTGCATACTTATCCAGGGATAGACAACAATGAGACCCTAAAGGTACATGGAGGTGGTGGAGCAGATCCTGATTCAAACCGTTCCGGTGATCTATATGCTACTATCAAGGTTAGGGAAGATCCTGTTTTTCGCAGAGAAGGATTAGATGTTCACGTGGATGCTGTTTTAAGTTTCACTCAGGCGATTTTGGGGGCAACTATTGAGGTCCCATCTTTTACTGGAAGTGTAAGGCTTAAGGTTCACCCAGGCACCCAACCTGGTCAGAAGGTGGTTATGAAAGGGAAAGGTATAATGAAAGGAATAAATACTTTCAAATATGGGGATCAATATGTTCATTTTAATGTCAGCATTCCGACAAACCTGACAGAAAGACAGCGTGAATTGATCGAAGAGTTTGCCAAGGAAGAGCAAGAGAAATCAGATAAACGGAAAGCTGCTTCGGCTTCTAGTTAA
Protein sequence

>Msa0592710

MIRPTGITFFTHLARRSLFRANHSVYQVVFQRGYRTLNPSSTVIGSSYATNVRHGVNLKNWLLLGAANSYFGATRSIHGSASLARSYYDVLGVSKDASSSEIKKAYYGLAKKLHPDANKDDPEAEKKFQEVTLAYEVLKDGEKRQQYDQIPTSVRSWPDNLFISGGNPHLTSRFCGVVLGPTTISNMVSEPLHDYGPPVVRFPLSGHPSFMFTLQMCNPEREGVGHDAYVNNQSGGFGGNGGFNPFEQMFRGGHDIFSSFFHQKFGGEDVKTVVELSFTEAIQGCTKTLSFQTDVLCNACGGSGLPPGTKPETCKRCKGSGVMFVHTGIFRMESTCATCKGTGKIVSSFCKSCQGAKVVKGTKSVKLHTYPGIDNNETLKVHGGGGADPDSNRSGDLYATIKVREDPVFRREGLDVHVDAVLSFTQAILGATIEVPSFTGSVRLKVHPGTQPGQKVVMKGKGIMKGINTFKYGDQYVHFNVSIPTNLTERQRELIEEFAKEEQEKSDKRKAASASS*