AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0880020


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0880020 MtrunA17_Chr7g0265761 96.552 58 2 0 3 60 113 170 1.18e-30 107
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 91 sgRNAs with CRISPR-Local

Find 206 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCTTGATCTTCTTTGGATC+TGG 0.192571 6_1:+26095216 Msa0880020:three_prime_UTR
GAAAATACAGTTGTTGATTT+AGG 0.205019 6_1:+26095247 Msa0880020:three_prime_UTR
GTGAGCATCTTGATCTTCTT+TGG 0.206390 6_1:+26095210 Msa0880020:three_prime_UTR
AGGGCACTGGTAATACTAAT+TGG 0.246573 6_1:+26093479 Msa0880020:three_prime_UTR
TTTCAATATATAATGGATAT+TGG 0.266175 6_1:+26093330 Msa0880020:three_prime_UTR
GTTATATGGTCATGTGTTAC+TGG 0.280175 6_1:+26095346 Msa0880020:three_prime_UTR
GTTAATTTAATGATTGAATC+AGG 0.281965 6_1:+26093937 Msa0880020:three_prime_UTR
ACAGGATTATGAGGACAATT+TGG 0.284874 6_1:-26093843 None:intergenic
ATATATTTAAAATATTTAAT+TGG 0.290545 6_1:-26093912 None:intergenic
AATCCACTTTCTAGATTATA+CGG 0.293808 6_1:-26093309 None:intergenic
TTTGGAGTCTCCTGCTTCTC+TGG 0.303491 6_1:-26094973 None:intergenic
TGCCTTAGGTTCTCATAATA+AGG 0.315168 6_1:+26095140 Msa0880020:three_prime_UTR
GAATCCTGACTTTGGTTATA+TGG 0.319518 6_1:+26095332 Msa0880020:three_prime_UTR
CAACTCCAATCACCTGTTAC+AGG 0.322194 6_1:-26095022 None:intergenic
TGTTACTGGTGGTTTGGTTA+TGG 0.327232 6_1:+26095360 Msa0880020:three_prime_UTR
CCTTCACTTGGCACTGTGCT+TGG 0.346567 6_1:-26095163 None:intergenic
AGTTGTTGATTTAGGAAAAC+TGG 0.354420 6_1:+26095255 Msa0880020:three_prime_UTR
TCTTGATCTTCTTTGGATCT+GGG 0.356960 6_1:+26095217 Msa0880020:three_prime_UTR
GCAGATTTACCAGCCTGCTT+AGG 0.386812 6_1:-26094934 None:intergenic
AAGTGGATTTCAATATATAA+TGG 0.387939 6_1:+26093323 Msa0880020:three_prime_UTR
TGATGCATTTACAACGGGTT+TGG 0.397107 6_1:-26093204 None:intergenic
GTCATGTGTTACTGGTGGTT+TGG 0.406898 6_1:+26095354 Msa0880020:three_prime_UTR
TTTAATTCAATAACTGCAGC+TGG 0.408069 6_1:-26093429 None:intergenic
TAGTCTCCAGTTACCTTCTT+CGG 0.410069 6_1:-26094158 None:intergenic
TTATTCTTTAAACATTCATA+TGG 0.410391 6_1:-26095468 None:intergenic
TGGTTATGGTTAGGTGTTTG+AGG 0.419623 6_1:+26095374 Msa0880020:three_prime_UTR
CTGGTGGTTTGGTTATGGTT+AGG 0.420510 6_1:+26095365 Msa0880020:three_prime_UTR
AAAACATTCCTGTGATGATT+CGG 0.428683 6_1:+26093610 Msa0880020:three_prime_UTR
TTTGCCTTCTTCACAGGTAC+AGG 0.429781 6_1:-26094280 None:intergenic
TTTAAGACTGAAGATGCCTT+AGG 0.434410 6_1:+26095126 Msa0880020:three_prime_UTR
CAGATTTACCAGCCTGCTTA+GGG 0.438934 6_1:-26094933 None:intergenic
ACAGCTGCAAGCCCTGTAAC+AGG 0.439457 6_1:+26095010 Msa0880020:three_prime_UTR
AAACATTCCTGTGATGATTC+GGG 0.444165 6_1:+26093611 Msa0880020:three_prime_UTR
CACAGGTACAGGTGTTTCCT+TGG 0.451744 6_1:-26094269 None:intergenic
GTGTTTGAGGCATATTAGAA+TGG 0.453336 6_1:+26095387 Msa0880020:three_prime_UTR
TAGAAGAAGGTAGGAATACT+TGG 0.454339 6_1:+26093503 Msa0880020:three_prime_UTR
ATTCCACTTAATGCTGCTAA+TGG 0.460106 6_1:+26093068 Msa0880020:CDS
CTTGATCTTCTTTGGATCTG+GGG 0.466662 6_1:+26095218 Msa0880020:three_prime_UTR
TAATAAGCAGCCAGAGAAGC+AGG 0.473969 6_1:+26094963 Msa0880020:three_prime_UTR
TTACCATTAGCAGCATTAAG+TGG 0.478094 6_1:-26093071 None:intergenic
TTAAGATCGAATCCTGACTT+TGG 0.479498 6_1:+26095324 Msa0880020:three_prime_UTR
GGGCACTGGTAATACTAATT+GGG 0.487636 6_1:+26093480 Msa0880020:three_prime_UTR
TCATGACCGACCATGAAAAC+AGG 0.488637 6_1:-26093861 None:intergenic
GTAATGTGTCGTTTAGCTCA+TGG 0.493327 6_1:+26094073 Msa0880020:three_prime_UTR
TTGAATTAAATGAAATGCTA+CGG 0.495050 6_1:+26093442 Msa0880020:three_prime_UTR
GTTTAGAGTATTATTCAACT+TGG 0.499516 6_1:+26095292 Msa0880020:three_prime_UTR
CTGTAATCTCCACTAGACTT+TGG 0.505848 6_1:-26094991 None:intergenic
TTACCAGCCTGCTTAGGGTA+AGG 0.510729 6_1:-26094928 None:intergenic
GGCCTTATTATGAGAACCTA+AGG 0.516695 6_1:-26095142 None:intergenic
TAACCGTATAATCTAGAAAG+TGG 0.519307 6_1:+26093306 Msa0880020:exon
CTAATTGGGTAGAAGAAGGT+AGG 0.526740 6_1:+26093494 Msa0880020:three_prime_UTR
ACCATGAAAACAGGATTATG+AGG 0.531502 6_1:-26093852 None:intergenic
AACACCTGTACCTGTGAAGA+AGG 0.532518 6_1:+26094276 Msa0880020:three_prime_UTR
TTAATTTAATGATTGAATCA+GGG 0.532605 6_1:+26093938 Msa0880020:three_prime_UTR
GCACCATTCACCTCCAACAC+AGG 0.534916 6_1:-26093182 None:intergenic
AATACTAATTGGGTAGAAGA+AGG 0.536290 6_1:+26093490 Msa0880020:three_prime_UTR
AAAATACAAATGTAGGGCAC+TGG 0.544061 6_1:+26093466 Msa0880020:three_prime_UTR
TGATACTCCTTACCCTAAGC+AGG 0.550019 6_1:+26094921 Msa0880020:three_prime_UTR
CCAAGCACAGTGCCAAGTGA+AGG 0.555760 6_1:+26095163 Msa0880020:three_prime_UTR
TTTGTCACTCCAGAGAAGAC+TGG 0.556582 6_1:+26094304 Msa0880020:three_prime_UTR
ATGACCATATAACCAAAGTC+AGG 0.561551 6_1:-26095336 None:intergenic
TTTAGATACTGATTCTGAAG+AGG 0.569513 6_1:+26093040 Msa0880020:intron
CAGTTCAGATTCATCTGATG+AGG 0.575058 6_1:+26093265 Msa0880020:CDS
TGTAGGGAAACCTGTGTTGG+AGG 0.575298 6_1:+26093172 Msa0880020:intron
ACTTACAAAATAGATGAAGC+TGG 0.575310 6_1:+26093642 Msa0880020:three_prime_UTR
TAATTTAATGATTGAATCAG+GGG 0.575685 6_1:+26093939 Msa0880020:three_prime_UTR
TTTAATATACGATGTAGACT+TGG 0.578812 6_1:+26093985 Msa0880020:three_prime_UTR
ACTCCTTACCCTAAGCAGGC+TGG 0.582053 6_1:+26094925 Msa0880020:three_prime_UTR
ATTGCCACCCGAATCATCAC+AGG 0.582150 6_1:-26093618 None:intergenic
AAACCTGTGTTGGAGGTGAA+TGG 0.584764 6_1:+26093179 Msa0880020:CDS
TTATGTAGGGAAACCTGTGT+TGG 0.588328 6_1:+26093169 Msa0880020:intron
CATCGAACAACTTTGTGTAT+CGG 0.588928 6_1:-26093395 None:intergenic
GTCGTTTAGCTCATGGCGAA+TGG 0.589514 6_1:+26094080 Msa0880020:three_prime_UTR
GATAAGAGTTATCAACTATG+TGG 0.591682 6_1:+26093888 Msa0880020:three_prime_UTR
ATATGGTCATGTGTTACTGG+TGG 0.595627 6_1:+26095349 Msa0880020:three_prime_UTR
AACTCCAATCACCTGTTACA+GGG 0.600270 6_1:-26095021 None:intergenic
CAGGAGACTCCAAAGTCTAG+TGG 0.603055 6_1:+26094982 Msa0880020:three_prime_UTR
GAGGGTTGCTGAATCTTCCA+AGG 0.606410 6_1:+26094252 Msa0880020:three_prime_UTR
CAAGCACAGTGCCAAGTGAA+GGG 0.609527 6_1:+26095164 Msa0880020:three_prime_UTR
AGACTGAAGGGAGCAACAAG+AGG 0.612717 6_1:+26094233 Msa0880020:intron
TGAGGATTCTAGTGAAGATG+AGG 0.614205 6_1:+26093283 Msa0880020:CDS
GCATATTAGAATGGATGTGT+TGG 0.614978 6_1:+26095396 Msa0880020:three_prime_UTR
CGATACACAAAGTTGTTCGA+TGG 0.619245 6_1:+26093396 Msa0880020:three_prime_UTR
TGATGAGGAGACACCGAAGA+AGG 0.620434 6_1:+26094145 Msa0880020:three_prime_UTR
ACAAAATAGATGAAGCTGGT+CGG 0.620919 6_1:+26093646 Msa0880020:three_prime_UTR
GACTGAAGGGAGCAACAAGA+GGG 0.623418 6_1:+26094234 Msa0880020:intron
AAGCGATGAAGATTCTGATG+AGG 0.625838 6_1:+26094130 Msa0880020:three_prime_UTR
AATTTAATGATTGAATCAGG+GGG 0.634660 6_1:+26093940 Msa0880020:three_prime_UTR
ACATTCCTACTTAAAAGTGA+AGG 0.659299 6_1:+26093706 Msa0880020:three_prime_UTR
CATTCCTGTGATGATTCGGG+TGG 0.685010 6_1:+26093614 Msa0880020:three_prime_UTR
TAGGGTAAGGAGTATCAACG+TGG 0.788217 6_1:-26094915 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATATTTAAAATATTTAAT+TGG - chr6_1:26093915-26093934 None:intergenic 0.0%
!! CAATATAAAATAGTATTAAA+AGG - chr6_1:26092808-26092827 None:intergenic 10.0%
!!! TTTCAATATATAATGGATAT+TGG + chr6_1:26093330-26093349 Msa0880020:three_prime_UTR 15.0%
!!! TGTTTTCTAAAGAAATTTTT+TGG - chr6_1:26093543-26093562 None:intergenic 15.0%
!! ATATTTGTACCAAAAATTAA+TGG + chr6_1:26093562-26093581 Msa0880020:three_prime_UTR 15.0%
!!! CATATATAACCATTAATTTT+TGG - chr6_1:26093574-26093593 None:intergenic 15.0%
!! TTAATTTAATGATTGAATCA+GGG + chr6_1:26093938-26093957 Msa0880020:three_prime_UTR 15.0%
!! TCAATAAAAAATTCAGTAAT+CGG - chr6_1:26094016-26094035 None:intergenic 15.0%
!!! ATTACTGAATTTTTTATTGA+AGG + chr6_1:26094016-26094035 Msa0880020:three_prime_UTR 15.0%
!!! ATTCATATTTTAGTTTGTTT+TGG + chr6_1:26094051-26094070 Msa0880020:three_prime_UTR 15.0%
!! CTCAAAATTAAATTCAAATT+CGG - chr6_1:26094204-26094223 None:intergenic 15.0%
!!! ATATCTTATTTTATCAATGT+TGG - chr6_1:26094455-26094474 None:intergenic 15.0%
!!! ATTTTTTTCTAATTGTACTT+CGG - chr6_1:26094778-26094797 None:intergenic 15.0%
!! TTATTCTTTAAACATTCATA+TGG - chr6_1:26095471-26095490 None:intergenic 15.0%
!! AAGATAAAAAAAATCCAAGA+AGG - chr6_1:26092337-26092356 None:intergenic 20.0%
!! TCTTGTTGCTAAATTAATAT+TGG + chr6_1:26092353-26092372 Msa0880020:intron 20.0%
!!! CGTTAATGTTTTTGTATAAA+TGG + chr6_1:26092533-26092552 Msa0880020:intron 20.0%
!! AAGATAAAAGAATGTAGTTA+AGG - chr6_1:26092898-26092917 None:intergenic 20.0%
!!! ATTGTTCTAAACATTTATGT+AGG + chr6_1:26093155-26093174 Msa0880020:intron 20.0%
!!! TTGTTCTAAACATTTATGTA+GGG + chr6_1:26093156-26093175 Msa0880020:intron 20.0%
!!! AAGTGGATTTCAATATATAA+TGG + chr6_1:26093323-26093342 Msa0880020:three_prime_UTR 20.0%
!! TTGAATTAAATGAAATGCTA+CGG + chr6_1:26093442-26093461 Msa0880020:three_prime_UTR 20.0%
!! GTTAATTTAATGATTGAATC+AGG + chr6_1:26093937-26093956 Msa0880020:three_prime_UTR 20.0%
!! TAATTTAATGATTGAATCAG+GGG + chr6_1:26093939-26093958 Msa0880020:three_prime_UTR 20.0%
! GCAATATCAAATTATTTCAG+CGG + chr6_1:26092292-26092311 Msa0880020:intron 25.0%
! CAAAAACATTAACGATTCAA+TGG - chr6_1:26092527-26092546 None:intergenic 25.0%
!!! ACATCTTTTGATTTGGTTTT+TGG + chr6_1:26092691-26092710 Msa0880020:intron 25.0%
!!! CATCTTTTGATTTGGTTTTT+GGG + chr6_1:26092692-26092711 Msa0880020:intron 25.0%
! GACAATAGAAATGCATAAAA+TGG - chr6_1:26093111-26093130 None:intergenic 25.0%
! AAAACAGAAAAAGAATCAGA+AGG + chr6_1:26093226-26093245 Msa0880020:CDS 25.0%
! AATCCACTTTCTAGATTATA+CGG - chr6_1:26093312-26093331 None:intergenic 25.0%
! TACGGAAAAATACAAATGTA+GGG + chr6_1:26093460-26093479 Msa0880020:three_prime_UTR 25.0%
! CTAAAAACTCATTCACATAA+AGG - chr6_1:26093766-26093785 None:intergenic 25.0%
! AATTTAATGATTGAATCAGG+GGG + chr6_1:26093940-26093959 Msa0880020:three_prime_UTR 25.0%
! TTTAATATACGATGTAGACT+TGG + chr6_1:26093985-26094004 Msa0880020:three_prime_UTR 25.0%
!! AAACTAACAAACAAAGTACT+GGG - chr6_1:26094341-26094360 None:intergenic 25.0%
! AAAACTAACAAACAAAGTAC+TGG - chr6_1:26094342-26094361 None:intergenic 25.0%
! TAATGTCATCTAGATGTATA+AGG + chr6_1:26094478-26094497 Msa0880020:intron 25.0%
!! TTAGTGACAATTTTGTCTTT+TGG + chr6_1:26094717-26094736 Msa0880020:intron 25.0%
! ATTAACAAAGTAGAACTGAA+AGG + chr6_1:26094849-26094868 Msa0880020:intron 25.0%
!! ACGAGAATTATGATATTTTC+AGG + chr6_1:26094877-26094896 Msa0880020:intron 25.0%
!!! AGAATTATGATATTTTCAGG+TGG + chr6_1:26094880-26094899 Msa0880020:intron 25.0%
!! AAATCAACAACTGTATTTTC+AGG - chr6_1:26095247-26095266 None:intergenic 25.0%
!!! GAAAATACAGTTGTTGATTT+AGG + chr6_1:26095247-26095266 Msa0880020:three_prime_UTR 25.0%
!! GTTTAGAGTATTATTCAACT+TGG + chr6_1:26095292-26095311 Msa0880020:three_prime_UTR 25.0%
GTAATATTGTGTTTCCTTCT+TGG + chr6_1:26092320-26092339 Msa0880020:intron 30.0%
! TCACAAATCACTATCCTTTT+AGG + chr6_1:26092386-26092405 Msa0880020:intron 30.0%
GTCTCAAATCTTTATATGAC+AGG + chr6_1:26092555-26092574 Msa0880020:intron 30.0%
TTTATATGACAGGCATGTTT+GGG + chr6_1:26092565-26092584 Msa0880020:intron 30.0%
TATCCCATAACTGGAAATAT+GGG + chr6_1:26092728-26092747 Msa0880020:intron 30.0%
AAAGGATATGAATCATGTTC+CGG - chr6_1:26092790-26092809 None:intergenic 30.0%
ATATTAGAACGCATTGTTGT+TGG - chr6_1:26092855-26092874 None:intergenic 30.0%
!! TTTAGATACTGATTCTGAAG+AGG + chr6_1:26093040-26093059 Msa0880020:intron 30.0%
! TGTTTAGAACAATATGACAC+AGG - chr6_1:26093148-26093167 None:intergenic 30.0%
!!! TGTTTTGATGCATTTACAAC+GGG - chr6_1:26093212-26093231 None:intergenic 30.0%
!!! CTGTTTTGATGCATTTACAA+CGG - chr6_1:26093213-26093232 None:intergenic 30.0%
TAACCGTATAATCTAGAAAG+TGG + chr6_1:26093306-26093325 Msa0880020:exon 30.0%
TTTAATTCAATAACTGCAGC+TGG - chr6_1:26093432-26093451 None:intergenic 30.0%
CTACGGAAAAATACAAATGT+AGG + chr6_1:26093459-26093478 Msa0880020:three_prime_UTR 30.0%
AATACTAATTGGGTAGAAGA+AGG + chr6_1:26093490-26093509 Msa0880020:three_prime_UTR 30.0%
AAAACATTCCTGTGATGATT+CGG + chr6_1:26093610-26093629 Msa0880020:three_prime_UTR 30.0%
ACTTACAAAATAGATGAAGC+TGG + chr6_1:26093642-26093661 Msa0880020:three_prime_UTR 30.0%
ACATTCCTACTTAAAAGTGA+AGG + chr6_1:26093706-26093725 Msa0880020:three_prime_UTR 30.0%
!! AAACACCTTCACTTTTAAGT+AGG - chr6_1:26093714-26093733 None:intergenic 30.0%
GATAAGAGTTATCAACTATG+TGG + chr6_1:26093888-26093907 Msa0880020:three_prime_UTR 30.0%
!!! TGAGTTTTGTTTTAGACTGA+AGG + chr6_1:26094220-26094239 Msa0880020:intron 30.0%
!!! GAGTTTTGTTTTAGACTGAA+GGG + chr6_1:26094221-26094240 Msa0880020:intron 30.0%
!! AACTAACAAACAAAGTACTG+GGG - chr6_1:26094340-26094359 None:intergenic 30.0%
! TACAACATTAGTGTCGAATA+AGG - chr6_1:26094401-26094420 None:intergenic 30.0%
TTCGACACTAATGTTGTATA+CGG + chr6_1:26094403-26094422 Msa0880020:intron 30.0%
TTATGCAATAACAGTGCAAA+GGG - chr6_1:26094525-26094544 None:intergenic 30.0%
TTTATGCAATAACAGTGCAA+AGG - chr6_1:26094526-26094545 None:intergenic 30.0%
TGCATAAAATTGCATTGTTG+TGG + chr6_1:26094538-26094557 Msa0880020:intron 30.0%
GTCAGAAAATATTTAACACG+TGG - chr6_1:26094682-26094701 None:intergenic 30.0%
!!! CACAATTTTATTTTGACTGC+AGG + chr6_1:26095100-26095119 Msa0880020:intron 30.0%
!! AGTTGTTGATTTAGGAAAAC+TGG + chr6_1:26095255-26095274 Msa0880020:three_prime_UTR 30.0%
! GTTTTACCTCAACACCTAAA+AGG - chr6_1:26092403-26092422 None:intergenic 35.0%
!! TTAGGTGTTGAGGTAAAACT+TGG + chr6_1:26092404-26092423 Msa0880020:intron 35.0%
! AAAACTTGGTGAATCACTCA+AGG + chr6_1:26092418-26092437 Msa0880020:intron 35.0%
AAGCATATACCGATGAAATG+TGG - chr6_1:26092469-26092488 None:intergenic 35.0%
CTTTATATGACAGGCATGTT+TGG + chr6_1:26092564-26092583 Msa0880020:intron 35.0%
TTATATGACAGGCATGTTTG+GGG + chr6_1:26092566-26092585 Msa0880020:intron 35.0%
ACCATCAAACTTCACATACA+GGG - chr6_1:26092626-26092645 None:intergenic 35.0%
!! TCCTCAGACATCTTTTGATT+TGG + chr6_1:26092684-26092703 Msa0880020:intron 35.0%
ACCAAATCAAAAGATGTCTG+AGG - chr6_1:26092688-26092707 None:intergenic 35.0%
AATTTGAGCTATCCCATAAC+TGG + chr6_1:26092719-26092738 Msa0880020:intron 35.0%
CTATCCCATAACTGGAAATA+TGG + chr6_1:26092727-26092746 Msa0880020:intron 35.0%
! ATTTAGAATCGAATGCGAAC+CGG + chr6_1:26092768-26092787 Msa0880020:intron 35.0%
ATTCCACTTAATGCTGCTAA+TGG + chr6_1:26093068-26093087 Msa0880020:CDS 35.0%
TTACCATTAGCAGCATTAAG+TGG - chr6_1:26093074-26093093 None:intergenic 35.0%
CATCGAACAACTTTGTGTAT+CGG - chr6_1:26093398-26093417 None:intergenic 35.0%
AAAATACAAATGTAGGGCAC+TGG + chr6_1:26093466-26093485 Msa0880020:three_prime_UTR 35.0%
TAGAAGAAGGTAGGAATACT+TGG + chr6_1:26093503-26093522 Msa0880020:three_prime_UTR 35.0%
AAACATTCCTGTGATGATTC+GGG + chr6_1:26093611-26093630 Msa0880020:three_prime_UTR 35.0%
ACAAAATAGATGAAGCTGGT+CGG + chr6_1:26093646-26093665 Msa0880020:three_prime_UTR 35.0%
ACAGGATTATGAGGACAATT+TGG - chr6_1:26093846-26093865 None:intergenic 35.0%
! TCCTCATAATCCTGTTTTCA+TGG + chr6_1:26093851-26093870 Msa0880020:three_prime_UTR 35.0%
ACCATGAAAACAGGATTATG+AGG - chr6_1:26093855-26093874 None:intergenic 35.0%
! CATAATCCTGTTTTCATGGT+CGG + chr6_1:26093855-26093874 Msa0880020:three_prime_UTR 35.0%
! ACAAATTTTGCCTTCTTCAC+AGG - chr6_1:26094289-26094308 None:intergenic 35.0%
AAAAACTAACCAGTCTTCTC+TGG - chr6_1:26094316-26094335 None:intergenic 35.0%
! TTAGTGTCGAATAAGGCTTA+GGG - chr6_1:26094394-26094413 None:intergenic 35.0%
! ATTAGTGTCGAATAAGGCTT+AGG - chr6_1:26094395-26094414 None:intergenic 35.0%
AGATGTATAAGGTTTGACAG+TGG + chr6_1:26094489-26094508 Msa0880020:intron 35.0%
AACTACTTTGTGACTTATGC+TGG + chr6_1:26094631-26094650 Msa0880020:intron 35.0%
!!! TTATGATATTTTCAGGTGGC+AGG + chr6_1:26094884-26094903 Msa0880020:intron 35.0%
TAAGTGTGTATAGAACGATG+AGG - chr6_1:26095072-26095091 None:intergenic 35.0%
! TTTAAGACTGAAGATGCCTT+AGG + chr6_1:26095126-26095145 Msa0880020:three_prime_UTR 35.0%
TGCCTTAGGTTCTCATAATA+AGG + chr6_1:26095140-26095159 Msa0880020:three_prime_UTR 35.0%
AAGCTAAAAAACCCTTCACT+TGG - chr6_1:26095178-26095197 None:intergenic 35.0%
ATCTTGATCTTCTTTGGATC+TGG + chr6_1:26095216-26095235 Msa0880020:three_prime_UTR 35.0%
TCTTGATCTTCTTTGGATCT+GGG + chr6_1:26095217-26095236 Msa0880020:three_prime_UTR 35.0%
TTAAGATCGAATCCTGACTT+TGG + chr6_1:26095324-26095343 Msa0880020:three_prime_UTR 35.0%
GAATCCTGACTTTGGTTATA+TGG + chr6_1:26095332-26095351 Msa0880020:three_prime_UTR 35.0%
ATGACCATATAACCAAAGTC+AGG - chr6_1:26095339-26095358 None:intergenic 35.0%
GTTATATGGTCATGTGTTAC+TGG + chr6_1:26095346-26095365 Msa0880020:three_prime_UTR 35.0%
! GTGTTTGAGGCATATTAGAA+TGG + chr6_1:26095387-26095406 Msa0880020:three_prime_UTR 35.0%
GCATATTAGAATGGATGTGT+TGG + chr6_1:26095396-26095415 Msa0880020:three_prime_UTR 35.0%
ACCAGAAGCAAAAACTGAAT+AGG + chr6_1:26095441-26095460 Msa0880020:three_prime_UTR 35.0%
! TCCTATTCAGTTTTTGCTTC+TGG - chr6_1:26095445-26095464 None:intergenic 35.0%
!! CACTATCCTTTTAGGTGTTG+AGG + chr6_1:26092394-26092413 Msa0880020:intron 40.0%
!! TGGATAAGCTCGCTATTTTC+TGG - chr6_1:26092449-26092468 None:intergenic 40.0%
CGAGCTTATCCACATTTCAT+CGG + chr6_1:26092457-26092476 Msa0880020:intron 40.0%
TATATGACAGGCATGTTTGG+GGG + chr6_1:26092567-26092586 Msa0880020:intron 40.0%
AACTTCACATACAGGGATAC+CGG - chr6_1:26092619-26092638 None:intergenic 40.0%
TCCCTGTATGTGAAGTTTGA+TGG + chr6_1:26092622-26092641 Msa0880020:intron 40.0%
GACCATCAAACTTCACATAC+AGG - chr6_1:26092627-26092646 None:intergenic 40.0%
GCTCCCATATTTCCAGTTAT+GGG - chr6_1:26092734-26092753 None:intergenic 40.0%
AGTGAAGATGAAGCTTCTGA+TGG + chr6_1:26092923-26092942 Msa0880020:intron 40.0%
TTATGTAGGGAAACCTGTGT+TGG + chr6_1:26093169-26093188 Msa0880020:intron 40.0%
! TGATGCATTTACAACGGGTT+TGG - chr6_1:26093207-26093226 None:intergenic 40.0%
CAGTTCAGATTCATCTGATG+AGG + chr6_1:26093265-26093284 Msa0880020:CDS 40.0%
TGAGGATTCTAGTGAAGATG+AGG + chr6_1:26093283-26093302 Msa0880020:CDS 40.0%
!! GTATCGGCACAACATCTTTT+TGG - chr6_1:26093382-26093401 None:intergenic 40.0%
CGATACACAAAGTTGTTCGA+TGG + chr6_1:26093396-26093415 Msa0880020:three_prime_UTR 40.0%
!! AGGGCACTGGTAATACTAAT+TGG + chr6_1:26093479-26093498 Msa0880020:three_prime_UTR 40.0%
!! GGGCACTGGTAATACTAATT+GGG + chr6_1:26093480-26093499 Msa0880020:three_prime_UTR 40.0%
CTAATTGGGTAGAAGAAGGT+AGG + chr6_1:26093494-26093513 Msa0880020:three_prime_UTR 40.0%
!! GTAATGTGTCGTTTAGCTCA+TGG + chr6_1:26094073-26094092 Msa0880020:three_prime_UTR 40.0%
AAGCGATGAAGATTCTGATG+AGG + chr6_1:26094130-26094149 Msa0880020:three_prime_UTR 40.0%
TAGTCTCCAGTTACCTTCTT+CGG - chr6_1:26094161-26094180 None:intergenic 40.0%
! TAGTGTCGAATAAGGCTTAG+GGG - chr6_1:26094393-26094412 None:intergenic 40.0%
AAGTGGTGAGAGAACATTGT+GGG - chr6_1:26094576-26094595 None:intergenic 40.0%
AAAGTGGTGAGAGAACATTG+TGG - chr6_1:26094577-26094596 None:intergenic 40.0%
ATGGAGCAGCTATTGCTTTA+TGG + chr6_1:26094605-26094624 Msa0880020:intron 40.0%
GTCCAACGAGGTTAAACTAT+CGG - chr6_1:26094806-26094825 None:intergenic 40.0%
ACAAATTAACGAGTCCAACG+AGG - chr6_1:26094818-26094837 None:intergenic 40.0%
CTGTAATCTCCACTAGACTT+TGG - chr6_1:26094994-26095013 None:intergenic 40.0%
AACTCCAATCACCTGTTACA+GGG - chr6_1:26095024-26095043 None:intergenic 40.0%
!! GGCCTTATTATGAGAACCTA+AGG - chr6_1:26095145-26095164 None:intergenic 40.0%
GTGAGCATCTTGATCTTCTT+TGG + chr6_1:26095210-26095229 Msa0880020:three_prime_UTR 40.0%
CTTGATCTTCTTTGGATCTG+GGG + chr6_1:26095218-26095237 Msa0880020:three_prime_UTR 40.0%
! ATATGGTCATGTGTTACTGG+TGG + chr6_1:26095349-26095368 Msa0880020:three_prime_UTR 40.0%
!! TGTTACTGGTGGTTTGGTTA+TGG + chr6_1:26095360-26095379 Msa0880020:three_prime_UTR 40.0%
TGGTTATGGTTAGGTGTTTG+AGG + chr6_1:26095374-26095393 Msa0880020:three_prime_UTR 40.0%
ACTTCACATACAGGGATACC+GGG - chr6_1:26092618-26092637 None:intergenic 45.0%
GATGGTCAGAAGCTTCAACT+TGG + chr6_1:26092640-26092659 Msa0880020:intron 45.0%
CGCTCCCATATTTCCAGTTA+TGG - chr6_1:26092735-26092754 None:intergenic 45.0%
!!! TATGGGAGCGTCTTCTTTTC+TGG + chr6_1:26092745-26092764 Msa0880020:intron 45.0%
AAACCTGTGTTGGAGGTGAA+TGG + chr6_1:26093179-26093198 Msa0880020:CDS 45.0%
TCATGACCGACCATGAAAAC+AGG - chr6_1:26093864-26093883 None:intergenic 45.0%
AACACCTGTACCTGTGAAGA+AGG + chr6_1:26094276-26094295 Msa0880020:three_prime_UTR 45.0%
TTTGCCTTCTTCACAGGTAC+AGG - chr6_1:26094283-26094302 None:intergenic 45.0%
TTTGTCACTCCAGAGAAGAC+TGG + chr6_1:26094304-26094323 Msa0880020:three_prime_UTR 45.0%
GGTACTAATGCTGCTCATCT+TGG + chr6_1:26094424-26094443 Msa0880020:intron 45.0%
AGTGGTGAGAGAACATTGTG+GGG - chr6_1:26094575-26094594 None:intergenic 45.0%
CTCACCACTTTGCCTATTCA+TGG + chr6_1:26094586-26094605 Msa0880020:intron 45.0%
TGCTCCATGAATAGGCAAAG+TGG - chr6_1:26094593-26094612 None:intergenic 45.0%
GCAATAGCTGCTCCATGAAT+AGG - chr6_1:26094601-26094620 None:intergenic 45.0%
GACCGATAGTTTAACCTCGT+TGG + chr6_1:26094801-26094820 Msa0880020:intron 45.0%
!! TAGGGTAAGGAGTATCAACG+TGG - chr6_1:26094918-26094937 None:intergenic 45.0%
TGATACTCCTTACCCTAAGC+AGG + chr6_1:26094921-26094940 Msa0880020:three_prime_UTR 45.0%
CAGATTTACCAGCCTGCTTA+GGG - chr6_1:26094936-26094955 None:intergenic 45.0%
TAATAAGCAGCCAGAGAAGC+AGG + chr6_1:26094963-26094982 Msa0880020:three_prime_UTR 45.0%
CAACTCCAATCACCTGTTAC+AGG - chr6_1:26095025-26095044 None:intergenic 45.0%
TGTATAGAACGATGAGGAGG+AGG - chr6_1:26095066-26095085 None:intergenic 45.0%
GTGTGTATAGAACGATGAGG+AGG - chr6_1:26095069-26095088 None:intergenic 45.0%
! GTCATGTGTTACTGGTGGTT+TGG + chr6_1:26095354-26095373 Msa0880020:three_prime_UTR 45.0%
!! CTGGTGGTTTGGTTATGGTT+AGG + chr6_1:26095365-26095384 Msa0880020:three_prime_UTR 45.0%
GGGAGGTCAGCAAGGATAAA+GGG + chr6_1:26092587-26092606 Msa0880020:intron 50.0%
CAAGGATAAAGGGAGTGACC+CGG + chr6_1:26092597-26092616 Msa0880020:intron 50.0%
TGTAGGGAAACCTGTGTTGG+AGG + chr6_1:26093172-26093191 Msa0880020:intron 50.0%
! CATTCCTGTGATGATTCGGG+TGG + chr6_1:26093614-26093633 Msa0880020:three_prime_UTR 50.0%
ATTGCCACCCGAATCATCAC+AGG - chr6_1:26093621-26093640 None:intergenic 50.0%
AGGGGGCTATTGTGTCTTAG+TGG + chr6_1:26093957-26093976 Msa0880020:three_prime_UTR 50.0%
! GTCGTTTAGCTCATGGCGAA+TGG + chr6_1:26094080-26094099 Msa0880020:three_prime_UTR 50.0%
TGATGAGGAGACACCGAAGA+AGG + chr6_1:26094145-26094164 Msa0880020:three_prime_UTR 50.0%
GAGACACCGAAGAAGGTAAC+TGG + chr6_1:26094152-26094171 Msa0880020:intron 50.0%
AGACTGAAGGGAGCAACAAG+AGG + chr6_1:26094233-26094252 Msa0880020:intron 50.0%
GACTGAAGGGAGCAACAAGA+GGG + chr6_1:26094234-26094253 Msa0880020:intron 50.0%
GAGGGTTGCTGAATCTTCCA+AGG + chr6_1:26094252-26094271 Msa0880020:three_prime_UTR 50.0%
CACAGGTACAGGTGTTTCCT+TGG - chr6_1:26094272-26094291 None:intergenic 50.0%
TTACCAGCCTGCTTAGGGTA+AGG - chr6_1:26094931-26094950 None:intergenic 50.0%
GCAGATTTACCAGCCTGCTT+AGG - chr6_1:26094937-26094956 None:intergenic 50.0%
! TTTGGAGTCTCCTGCTTCTC+TGG - chr6_1:26094976-26094995 None:intergenic 50.0%
CAGGAGACTCCAAAGTCTAG+TGG + chr6_1:26094982-26095001 Msa0880020:three_prime_UTR 50.0%
CAAGCCCTGTAACAGGTGAT+TGG + chr6_1:26095017-26095036 Msa0880020:intron 50.0%
CAAGCACAGTGCCAAGTGAA+GGG + chr6_1:26095164-26095183 Msa0880020:three_prime_UTR 50.0%
ATGACAGGCATGTTTGGGGG+AGG + chr6_1:26092570-26092589 Msa0880020:intron 55.0%
ATGTTTGGGGGAGGTCAGCA+AGG + chr6_1:26092579-26092598 Msa0880020:intron 55.0%
GGGGAGGTCAGCAAGGATAA+AGG + chr6_1:26092586-26092605 Msa0880020:intron 55.0%
GCACCATTCACCTCCAACAC+AGG - chr6_1:26093185-26093204 None:intergenic 55.0%
ACTCCTTACCCTAAGCAGGC+TGG + chr6_1:26094925-26094944 Msa0880020:three_prime_UTR 55.0%
ACAGCTGCAAGCCCTGTAAC+AGG + chr6_1:26095010-26095029 Msa0880020:three_prime_UTR 55.0%
CCTTCACTTGGCACTGTGCT+TGG - chr6_1:26095166-26095185 None:intergenic 55.0%
CCAAGCACAGTGCCAAGTGA+AGG + chr6_1:26095163-26095182 Msa0880020:three_prime_UTR 55.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 26092281 26095508 26092281 ID=Msa0880020;Name=Msa0880020
chr6_1 mRNA 26092281 26095508 26092281 ID=Msa0880020-mRNA-1;Parent=Msa0880020;Name=Msa0880020-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|0.8|0.83|0.83|1|0.83|6|1461|62
chr6_1 exon 26092281 26092284 26092281 ID=Msa0880020-mRNA-1:exon:6349;Parent=Msa0880020-mRNA-1
chr6_1 exon 26093045 26093089 26093045 ID=Msa0880020-mRNA-1:exon:6350;Parent=Msa0880020-mRNA-1
chr6_1 exon 26093177 26094166 26093177 ID=Msa0880020-mRNA-1:exon:6351;Parent=Msa0880020-mRNA-1
chr6_1 exon 26094235 26094325 26094235 ID=Msa0880020-mRNA-1:exon:6352;Parent=Msa0880020-mRNA-1
chr6_1 exon 26094899 26095031 26094899 ID=Msa0880020-mRNA-1:exon:6353;Parent=Msa0880020-mRNA-1
chr6_1 exon 26095122 26095508 26095122 ID=Msa0880020-mRNA-1:exon:6354;Parent=Msa0880020-mRNA-1
chr6_1 CDS 26092281 26092284 26092281 ID=Msa0880020-mRNA-1:cds;Parent=Msa0880020-mRNA-1
chr6_1 CDS 26093045 26093089 26093045 ID=Msa0880020-mRNA-1:cds;Parent=Msa0880020-mRNA-1
chr6_1 CDS 26093177 26093316 26093177 ID=Msa0880020-mRNA-1:cds;Parent=Msa0880020-mRNA-1
chr6_1 three_prime_UTR 26093317 26094166 26093317 ID=Msa0880020-mRNA-1:three_prime_utr;Parent=Msa0880020-mRNA-1
chr6_1 three_prime_UTR 26094235 26094325 26094235 ID=Msa0880020-mRNA-1:three_prime_utr;Parent=Msa0880020-mRNA-1
chr6_1 three_prime_UTR 26094899 26095031 26094899 ID=Msa0880020-mRNA-1:three_prime_utr;Parent=Msa0880020-mRNA-1
chr6_1 three_prime_UTR 26095122 26095508 26095122 ID=Msa0880020-mRNA-1:three_prime_utr;Parent=Msa0880020-mRNA-1
Gene Sequence

>Msa0880020

ATGGATACTGATTCTGAAGAGGAAGATATTCCACTTAATGCTGCTAATGGGAAACCTGTGTTGGAGGTGAATGGTGCCAAACCCGTTGTAAATGCATCAAAACAGAAAAAGAATCAGAAGGATGCTAGTACTGACGACAGTTCAGATTCATCTGATGAGGATTCTAGTGAAGATGAGGTAACCGTATAA

Protein sequence

>Msa0880020

MDTDSEEEDIPLNAANGKPVLEVNGAKPVVNASKQKKNQKDASTDDSSDSSDEDSSEDEVTV*