AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0399340

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0399340 MtrunA17_Chr3g0087741 91.667 444 11 2 1 419 1 443 0.0 822
Msa0399340 MtrunA17_Chr4g0010781 62.889 450 126 8 1 418 1 441 0.0 514
Msa0399340 MtrunA17_Chr5g0426951 40.608 362 181 6 73 404 69 426 3.13e-80 255
Msa0399340 MtrunA17_Chr3g0123861 37.465 355 172 7 89 402 82 427 1.28e-60 202
Msa0399340 MtrunA17_Chr2g0333221 30.481 374 199 7 78 400 59 422 2.07e-48 172
Msa0399340 MtrunA17_Chr6g0478651 31.217 378 201 9 88 413 67 437 2.24e-45 164
Msa0399340 MtrunA17_Chr4g0010801 44.311 167 29 2 207 309 1 167 1.32e-35 130
Msa0399340 MtrunA17_Chr8g0334811 31.988 347 170 14 90 386 15 345 2.54e-35 135
Msa0399340 MtrunA17_Chr7g0269841 30.000 330 208 6 83 398 20 340 1.37e-30 120
Msa0399340 MtrunA17_Chr4g0010811 63.333 90 30 3 330 417 9 97 3.09e-26 101
Msa0399340 MtrunA17_Chr2g0322181 30.854 363 199 11 80 398 1 355 3.53e-26 109
Msa0399340 MtrunA17_Chr4g0040501 31.454 337 196 16 89 394 4 336 5.02e-25 105
Msa0399340 MtrunA17_Chr4g0025401 29.345 351 202 10 80 390 1 345 1.48e-24 104
Msa0399340 MtrunA17_Chr2g0324921 28.923 325 211 7 89 394 4 327 2.37e-24 102
Msa0399340 MtrunA17_Chr2g0282741 27.193 342 199 11 89 394 4 331 3.03e-24 102
Msa0399340 MtrunA17_Chr4g0006391 29.607 331 205 9 89 394 4 331 8.99e-24 101
Msa0399340 MtrunA17_Chr3g0138471 26.888 331 201 10 89 394 4 318 4.28e-23 99.4
Msa0399340 MtrunA17_Chr2g0282761 26.989 352 195 14 89 395 4 338 1.81e-17 83.2
Msa0399340 MtrunA17_Chr1g0159491 50.000 66 33 0 89 154 6 71 4.82e-17 75.5
Msa0399340 MtrunA17_Chr1g0209551 50.649 77 37 1 83 158 9 85 3.28e-16 80.1
Msa0399340 MtrunA17_Chr5g0393371 41.414 99 52 1 89 187 6 98 3.77e-16 79.7
Msa0399340 MtrunA17_Chr7g0258061 56.716 67 29 0 88 154 21 87 9.96e-16 77.0
Msa0399340 MtrunA17_Chr1g0159511 41.414 99 52 2 89 187 6 98 1.08e-15 78.2
Msa0399340 MtrunA17_Chr7g0263971 59.091 66 26 1 88 152 368 433 1.16e-15 79.0
Msa0399340 MtrunA17_Chr1g0206121 53.333 75 31 3 89 160 35 108 1.46e-15 77.0
Msa0399340 MtrunA17_Chr8g0352451 41.837 98 51 1 90 187 73 164 1.79e-15 77.8
Msa0399340 MtrunA17_Chr5g0414471 34.532 139 82 3 77 214 13 143 8.16e-15 75.9
Msa0399340 MtrunA17_Chr4g0021141 43.210 81 44 1 74 154 9 87 1.14e-13 67.8
Msa0399340 MtrunA17_Chr1g0173931 52.308 65 31 0 90 154 39 103 2.69e-13 70.1
Msa0399340 MtrunA17_Chr7g0271891 48.485 66 30 1 90 151 17 82 1.42e-12 65.5
Msa0399340 MtrunA17_Chr7g0242951 48.529 68 34 1 89 156 27 93 6.51e-12 67.4
Msa0399340 MtrunA17_Chr5g0427221 40.741 81 46 1 71 151 32 110 6.87e-12 63.2
Msa0399340 MtrunA17_Chr8g0344721 47.126 87 39 2 87 167 8 93 1.03e-11 64.7
Msa0399340 MtrunA17_Chr7g0253281 46.575 73 35 2 89 158 54 125 1.05e-11 65.5
Msa0399340 MtrunA17_Chr2g0328581 45.946 74 34 2 78 151 69 136 1.35e-11 63.5
Msa0399340 MtrunA17_Chr6g0460461 43.243 74 37 1 89 157 2 75 1.75e-11 63.5
Msa0399340 MtrunA17_Chr2g0295361 36.842 95 58 2 89 182 39 132 5.05e-11 63.2
Msa0399340 MtrunA17_Chr2g0295821 46.970 66 34 1 89 154 104 168 7.88e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0399340 AT5G48030.1 56.559 465 144 11 1 417 1 455 1.41e-168 481
Msa0399340 AT1G28210.3 36.104 385 201 8 63 404 5 387 5.82e-77 244
Msa0399340 AT1G28210.1 36.104 385 201 8 63 404 5 387 8.94e-77 244
Msa0399340 AT1G28210.2 36.104 385 201 8 63 404 5 387 1.86e-76 244
Msa0399340 AT2G22360.1 37.394 353 170 6 89 400 86 428 3.20e-63 210
Msa0399340 AT4G39960.1 36.011 361 171 7 89 400 85 434 5.24e-60 202
Msa0399340 AT4G39960.2 36.011 361 171 7 89 400 85 434 5.24e-60 202
Msa0399340 AT1G80030.4 32.044 362 187 7 89 400 75 427 3.22e-50 177
Msa0399340 AT1G80030.2 32.044 362 187 7 89 400 75 427 3.51e-50 177
Msa0399340 AT1G80030.3 32.044 362 187 7 89 400 75 427 3.51e-50 177
Msa0399340 AT1G80030.1 32.044 362 187 7 89 400 75 427 3.51e-50 177
Msa0399340 AT3G17830.1 33.989 356 190 7 89 400 63 417 7.69e-50 176
Msa0399340 AT3G62600.1 30.539 334 195 7 88 399 25 343 4.32e-32 125
Msa0399340 AT5G22060.1 30.398 352 192 12 90 398 15 356 2.20e-29 119
Msa0399340 AT3G44110.1 29.692 357 187 12 90 398 15 355 9.17e-26 108
Msa0399340 AT1G59725.1 27.356 329 205 9 89 394 4 321 1.22e-25 107
Msa0399340 AT2G20560.1 29.052 327 210 8 89 394 4 329 2.58e-25 105
Msa0399340 AT1G10350.1 27.326 344 204 10 89 394 4 339 3.52e-25 105
Msa0399340 AT5G01390.1 29.341 334 205 10 89 398 4 330 2.18e-24 103
Msa0399340 AT5G25530.2 26.225 347 203 9 89 398 4 334 2.40e-24 103
Msa0399340 AT3G08910.1 30.368 326 199 9 89 398 4 317 9.38e-24 101
Msa0399340 AT3G44110.2 30.844 308 152 10 90 352 15 306 5.54e-23 99.8
Msa0399340 AT5G01390.2 29.904 311 167 9 89 394 4 268 6.97e-23 97.8
Msa0399340 AT4G28480.2 28.261 322 172 8 89 394 4 282 2.99e-22 96.7
Msa0399340 AT5G25530.1 25.634 355 203 10 89 398 4 342 6.95e-22 96.7
Msa0399340 AT3G47940.1 25.434 346 208 10 89 394 4 339 3.83e-18 85.5
Msa0399340 AT4G39150.3 43.434 99 50 1 89 187 6 98 6.65e-18 84.7
Msa0399340 AT4G39150.1 43.434 99 50 1 89 187 6 98 6.65e-18 84.7
Msa0399340 AT4G39150.2 43.434 99 50 1 89 187 6 98 6.65e-18 84.7
Msa0399340 AT5G06910.1 41.071 112 53 3 90 201 30 128 2.43e-17 82.4
Msa0399340 AT3G12170.2 41.346 104 58 1 64 167 22 122 5.27e-17 81.6
Msa0399340 AT2G21510.5 40.404 99 53 1 89 187 6 98 8.19e-17 81.3
Msa0399340 AT1G59980.2 41.406 128 66 5 91 217 25 144 9.43e-17 81.6
Msa0399340 AT2G21510.2 40.404 99 53 1 89 187 6 98 1.11e-16 81.3
Msa0399340 AT2G21510.4 40.404 99 53 1 89 187 6 98 1.11e-16 81.3
Msa0399340 AT2G21510.3 40.404 99 53 1 89 187 6 98 1.21e-16 81.3
Msa0399340 AT2G21510.1 40.404 99 53 1 89 187 6 98 1.21e-16 81.3
Msa0399340 AT1G59980.1 38.686 137 75 5 91 226 25 153 1.80e-16 81.3
Msa0399340 AT5G01390.3 43.519 108 54 3 89 189 4 111 5.13e-16 77.4
Msa0399340 AT1G76700.1 41.837 98 51 1 89 186 6 97 5.46e-16 79.7
Msa0399340 AT3G12170.1 50.000 80 37 1 88 167 10 86 6.86e-16 77.8
Msa0399340 AT1G21080.3 51.429 70 34 0 89 158 6 75 1.30e-15 78.6
Msa0399340 AT1G21080.1 51.429 70 34 0 89 158 6 75 1.33e-15 78.6
Msa0399340 AT5G01390.4 45.872 109 50 4 89 189 4 111 1.97e-15 75.9
Msa0399340 AT4G28480.1 41.667 108 56 3 89 189 4 111 6.91e-15 75.9
Msa0399340 AT1G68370.1 35.211 142 81 4 76 214 2 135 1.01e-14 75.9
Msa0399340 AT1G77020.1 37.755 98 55 1 90 187 7 98 5.03e-14 73.6
Msa0399340 AT1G24120.1 35.772 123 71 3 86 208 17 131 5.56e-14 73.9
Msa0399340 AT1G71000.2 41.429 70 37 1 86 151 5 74 1.04e-13 69.3
Msa0399340 AT1G56300.2 44.595 74 37 1 82 151 6 79 2.23e-13 67.0
Msa0399340 AT3G08970.1 52.941 68 31 1 89 156 27 93 3.02e-13 72.0
Msa0399340 AT3G08970.2 52.941 68 31 1 89 156 27 93 3.02e-13 72.0
Msa0399340 AT5G03160.1 54.545 66 29 1 88 152 369 434 3.25e-13 71.6
Msa0399340 AT1G56300.1 44.595 74 37 1 82 151 6 79 5.24e-13 67.0
Msa0399340 AT2G33735.1 46.154 65 35 0 88 152 21 85 8.14e-13 65.5
Msa0399340 AT2G33735.2 46.154 65 35 0 88 152 21 85 8.14e-13 65.5
Msa0399340 AT1G71000.1 41.429 70 37 1 86 151 5 74 8.56e-13 66.6
Msa0399340 AT2G41000.2 40.217 92 50 1 89 175 3 94 2.35e-12 66.2
Msa0399340 AT5G16650.1 46.269 67 36 0 88 154 10 76 3.76e-12 63.5
Msa0399340 AT5G05750.1 34.615 104 64 3 88 189 113 214 4.64e-12 67.0
Msa0399340 AT5G49060.2 48.485 66 33 1 89 154 99 163 1.41e-11 65.9
Msa0399340 AT5G49060.1 48.485 66 33 1 89 154 99 163 1.41e-11 65.9
Msa0399340 AT2G41000.1 40.217 92 50 1 89 175 3 94 1.49e-11 63.5
Msa0399340 AT1G61770.1 46.154 65 34 1 87 151 32 95 1.93e-11 65.1
Msa0399340 AT5G16650.2 46.269 67 36 0 88 154 10 76 2.42e-11 62.4
Msa0399340 AT1G79940.2 34.074 135 81 6 27 155 33 165 3.96e-11 65.5
Msa0399340 AT1G79940.3 34.074 135 81 6 27 155 33 165 3.96e-11 65.5
Msa0399340 AT1G79940.1 34.074 135 81 6 27 155 33 165 3.96e-11 65.5
Msa0399340 AT1G79940.4 34.074 135 81 6 27 155 33 165 4.01e-11 65.5
Msa0399340 AT5G18140.1 46.970 66 34 1 88 153 76 140 5.35e-11 63.9

Find 143 sgRNAs with CRISPR-Local

Find 657 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGGAGCAGCAAATACTTATT+TGG 0.161907 3_2:+22435289 Msa0399340:CDS
GTCAGTTAAATTGGATATTA+TGG 0.190985 3_2:+22438924 Msa0399340:CDS
TTACAACGCTTACAGGTTTC+AGG 0.193088 3_2:-22438082 None:intergenic
CCCTTTGGAGGCGGTGGCTT+TGG 0.221063 3_2:+22437202 Msa0399340:CDS
GCCTAATGAGTTATATCTTT+TGG 0.245855 3_2:-22442927 None:intergenic
AGCAACCAAGTCAGTTAAAT+TGG 0.248112 3_2:+22438915 Msa0399340:CDS
TAATTCTCAATTAATTTATA+AGG 0.249114 3_2:+22443759 Msa0399340:three_prime_UTR
GGAAAAGCTGCTTCGGCTTC+TGG 0.249779 3_2:+22443555 Msa0399340:CDS
TATAATATTCATTAACATAA+AGG 0.270547 3_2:+22443831 Msa0399340:three_prime_UTR
TGACAACAATGAAACCATTA+AGG 0.276719 3_2:+22439605 Msa0399340:CDS
ATTCAGGTCCCAACTCTTAC+TGG 0.281089 3_2:+22442634 Msa0399340:CDS
GGAGCAGCAAATACTTATTT+GGG 0.282978 3_2:+22435290 Msa0399340:CDS
TGACCCTTTACAACGCTTAC+AGG 0.286362 3_2:-22438089 None:intergenic
ATTGAAGAACTGGGTGCTAT+TGG 0.286647 3_2:+22435268 Msa0399340:CDS
TTCTGACCGTGCTGTGTTCC+AGG 0.297907 3_2:-22442765 None:intergenic
GATGGTGGCTTTGGTCCCTT+TGG 0.298687 3_2:+22437187 Msa0399340:CDS
ATTTGTTGCGGAGGAGATTA+GGG 0.299070 3_2:-22434194 None:intergenic
ATTTGGGGAAGATGATGATT+AGG 0.307596 3_2:-22434129 None:intergenic
GAAATAAAGAAAGCATACTA+TGG 0.314834 3_2:+22435612 Msa0399340:CDS
GAGTGTTGCAAAGGGGTTAT+AGG 0.317654 3_2:+22434334 Msa0399340:CDS
AATCGTTCTTCCAAAGTTAC+TGG 0.320508 3_2:+22434378 Msa0399340:CDS
GCCATTGGAGCGAACCATTT+GGG 0.322584 3_2:-22434145 None:intergenic
TACTGGGGATGTTGTTGTTA+AGG 0.326185 3_2:+22442651 Msa0399340:CDS
GGTTATAGGACATTGAATTC+AGG 0.330563 3_2:+22434348 Msa0399340:CDS
CAATATGAATCTTCCGATAA+AGG 0.341538 3_2:+22443534 Msa0399340:CDS
GGAACCTTGATAAATTATAT+TGG 0.345465 3_2:+22443903 Msa0399340:three_prime_UTR
GTAAACCGAGAAAATGGTTC+TGG 0.348842 3_2:+22437163 Msa0399340:CDS
CGCCATTGGAGCGAACCATT+TGG 0.350709 3_2:-22434146 None:intergenic
CTCGGTTTACAAAACCTTCA+TGG 0.359083 3_2:-22437150 None:intergenic
ATAATATTCATTAACATAAA+GGG 0.359155 3_2:+22443832 Msa0399340:three_prime_UTR
GGATCATCTTTGTTTGTGTC+AGG 0.359672 3_2:-22436253 None:intergenic
TATTTGTTGCGGAGGAGATT+AGG 0.361923 3_2:-22434195 None:intergenic
GCAGCGGCTTCTTGCCCGAT+TGG 0.364034 3_2:-22443631 None:intergenic
CTGAATGGTTCCGCCCAAAA+TGG 0.371806 3_2:-22442617 None:intergenic
CATATCTGTTTGAAATGTAA+TGG 0.373827 3_2:-22437889 None:intergenic
GGTGGGAGTGGGGTTCCTCC+TGG 0.384899 3_2:+22438052 Msa0399340:intron
AAAATAATTTCCAGTAACTT+TGG 0.386866 3_2:-22434388 None:intergenic
ATGGTGTTAAATTGAAGAAC+TGG 0.387127 3_2:+22435258 Msa0399340:CDS
ATCACCAGGTCGATCTCCTT+CGG 0.389962 3_2:-22439652 None:intergenic
TTTGGGGAAGATGATGATTA+GGG 0.397151 3_2:-22434128 None:intergenic
AGAAATTTCAAGAAGTTTCA+AGG 0.402733 3_2:+22436287 Msa0399340:CDS
TTTAACTGACTTGGTTGCTC+TGG 0.411207 3_2:-22438911 None:intergenic
TTGAAGAACTGGGTGCTATT+GGG 0.413042 3_2:+22435269 Msa0399340:CDS
GGTTCTGGAGATGGTGGCTT+TGG 0.418459 3_2:+22437178 Msa0399340:CDS
TGAACAATTGCAGGTGGGAG+TGG 0.421996 3_2:+22438040 Msa0399340:intron
ACAATCAATTTGTGGCCAAT+CGG 0.426617 3_2:+22443616 Msa0399340:three_prime_UTR
CTTATTTCGCAGGTGCGTCC+TGG 0.427230 3_2:+22442747 Msa0399340:intron
TCACCAGGTCGATCTCCTTC+GGG 0.432930 3_2:-22439651 None:intergenic
CCCCAAATGGTTCGCTCCAA+TGG 0.433535 3_2:+22434144 Msa0399340:exon
CAATCAATTTGTGGCCAATC+GGG 0.438783 3_2:+22443617 Msa0399340:three_prime_UTR
CGATAAAGGAAAAGCTGCTT+CGG 0.441523 3_2:+22443548 Msa0399340:CDS
GAACAATTGCAGGTGGGAGT+GGG 0.444602 3_2:+22438041 Msa0399340:intron
CAGGTTTCAGGTCTTGTACC+AGG 0.447146 3_2:-22438070 None:intergenic
AGAAGTTTCAAGGGCATATG+AGG 0.447678 3_2:+22436297 Msa0399340:CDS
ACCATTAAGGTTTACAAAAG+TGG 0.448952 3_2:+22439618 Msa0399340:CDS
ACCAAAAGATATAACTCATT+AGG 0.452281 3_2:+22442926 Msa0399340:CDS
GGTGGCTTTGGTCCCTTTGG+AGG 0.453256 3_2:+22437190 Msa0399340:CDS
AAGGTTCTAGTGTTTAAGAA+AGG 0.455203 3_2:-22434050 None:intergenic
GGGGCAACTAGATCCATTCA+TGG 0.455696 3_2:+22435311 Msa0399340:CDS
ATTTATACCTGATCCATGAA+TGG 0.455766 3_2:-22435324 None:intergenic
ACTAGATCCATTCATGGATC+AGG 0.467009 3_2:+22435317 Msa0399340:CDS
TGCTCCAATATAATTTATCA+AGG 0.468946 3_2:-22443907 None:intergenic
GAAACCTGTAAGCGTTGTAA+AGG 0.469131 3_2:+22438085 Msa0399340:CDS
AAGAAGAAGCTTGACGCCAT+TGG 0.469160 3_2:-22434160 None:intergenic
TAATCGGAACATTGGCGGAC+AGG 0.471543 3_2:+22437724 Msa0399340:CDS
ATGAAATTGGGTTAATCTTG+TGG 0.472042 3_2:-22433912 None:intergenic
ATTCCCGCTGTCTATCTGTC+AGG 0.476235 3_2:-22443485 None:intergenic
GGTGAATTTCAGGTATATGA+AGG 0.477900 3_2:+22434312 Msa0399340:intron
CTCTTTAATCGGAACATTGG+CGG 0.480670 3_2:+22437719 Msa0399340:CDS
TTCAGGTCCCAACTCTTACT+GGG 0.483137 3_2:+22442635 Msa0399340:CDS
GTTAAATTGGATATTATGGC+TGG 0.484283 3_2:+22438928 Msa0399340:CDS
GGCTTTGGTCCCTTTGGAGG+CGG 0.484799 3_2:+22437193 Msa0399340:CDS
TTTGGTCCCTTTGGAGGCGG+TGG 0.485763 3_2:+22437196 Msa0399340:CDS
AAATAAAGAAAGCATACTAT+GGG 0.491279 3_2:+22435613 Msa0399340:CDS
AATATCCAATTTAACTGACT+TGG 0.496445 3_2:-22438920 None:intergenic
AATCATTTACAATCAATTTG+TGG 0.499198 3_2:+22443608 Msa0399340:three_prime_UTR
CGAGAAAATGGTTCTGGAGA+TGG 0.499609 3_2:+22437169 Msa0399340:CDS
TAATCATCATCTTCCCCAAA+TGG 0.501052 3_2:+22434131 Msa0399340:exon
TGTAAGCGTTGTAAAGGGTC+AGG 0.503182 3_2:+22438091 Msa0399340:CDS
TAAATTATATTGGAGCATGA+TGG 0.507000 3_2:+22443913 Msa0399340:three_prime_UTR
GATCCTTCTCTACGGAAGAC+AGG 0.514946 3_2:-22439806 None:intergenic
GAAATTTCAAGAAGTTTCAA+GGG 0.515825 3_2:+22436288 Msa0399340:CDS
AAACCTGTAAGCGTTGTAAA+GGG 0.519876 3_2:+22438086 Msa0399340:CDS
TCCAAAGCCACCGCCTCCAA+AGG 0.520033 3_2:-22437203 None:intergenic
ACAGACTAGGATACTGCAAC+AGG 0.524731 3_2:-22443804 None:intergenic
CAACATCCCCAGTAAGAGTT+GGG 0.525837 3_2:-22442642 None:intergenic
ATATGAAGGAGTGTTGCAAA+GGG 0.531685 3_2:+22434326 Msa0399340:CDS
TTCTACAAAACTTCAATAGC+AGG 0.534126 3_2:-22443653 None:intergenic
AGAGTACGTATTTGTTGCGG+AGG 0.538860 3_2:-22434203 None:intergenic
TAATATTCATTAACATAAAG+GGG 0.545828 3_2:+22443833 Msa0399340:three_prime_UTR
CCAAAGCCACCGCCTCCAAA+GGG 0.546016 3_2:-22437202 None:intergenic
GACCTCTTTAATCGGAACAT+TGG 0.548612 3_2:+22437716 Msa0399340:CDS
AAAGCGTCAAGAGTATGATC+AGG 0.550196 3_2:+22436461 Msa0399340:CDS
GATATGTAGGTTGGCCATGA+AGG 0.551132 3_2:+22437136 Msa0399340:intron
TGTTCCGATTAAAGAGGTCA+TGG 0.554621 3_2:-22437712 None:intergenic
TGATCTTTATGTTACTGTCA+AGG 0.555206 3_2:+22439671 Msa0399340:CDS
TATATGAAGGAGTGTTGCAA+AGG 0.560224 3_2:+22434325 Msa0399340:CDS
ACAACATCCCCAGTAAGAGT+TGG 0.560824 3_2:-22442643 None:intergenic
GAGTTTCTGCAAGTCATGCA+AGG 0.561847 3_2:+22438876 Msa0399340:intron
CGCCAATGTTCCGATTAAAG+AGG 0.565093 3_2:-22437718 None:intergenic
GATCCTGTCTTCCGTAGAGA+AGG 0.566629 3_2:+22439803 Msa0399340:CDS
AACAATTGCAGGTGGGAGTG+GGG 0.568110 3_2:+22438042 Msa0399340:intron
ATACTGATTGCAGTTGGAGA+TGG 0.568551 3_2:+22435239 Msa0399340:intron
TACATATACTCAAAAGTGGA+GGG 0.570682 3_2:-22443708 None:intergenic
CAAGTCATGCAAGGGTGCAA+AGG 0.570979 3_2:+22438885 Msa0399340:CDS
ATATTACATATACTCAAAAG+TGG 0.584048 3_2:-22443712 None:intergenic
AGTAAGAGTTGGGACCTGAA+TGG 0.587664 3_2:-22442632 None:intergenic
TGTCTTCCGTAGAGAAGGAT+CGG 0.591949 3_2:+22439808 Msa0399340:CDS
TGGAACACAGCACGGTCAGA+AGG 0.596779 3_2:+22442767 Msa0399340:CDS
CCATTGGAGCGAACCATTTG+GGG 0.598411 3_2:-22434144 None:intergenic
GAATATCCGATCCTTCTCTA+CGG 0.600340 3_2:-22439814 None:intergenic
TCATAAAAGTCCTTTGCCAA+TGG 0.600767 3_2:-22435555 None:intergenic
TTACATATACTCAAAAGTGG+AGG 0.601000 3_2:-22443709 None:intergenic
GAGCAGCAAATACTTATTTG+GGG 0.607798 3_2:+22435291 Msa0399340:CDS
ATTAAGGTTTACAAAAGTGG+TGG 0.608388 3_2:+22439621 Msa0399340:CDS
AAAACTTCAATAGCAGGCAG+CGG 0.611478 3_2:-22443647 None:intergenic
GATATGATTTGTAACACTTG+TGG 0.611871 3_2:+22437906 Msa0399340:CDS
AAACAAAGATGATCCTGAAG+CGG 0.617397 3_2:+22436261 Msa0399340:CDS
AAGGTGGTTCTGAAACAGAA+AGG 0.617446 3_2:+22442786 Msa0399340:CDS
CATTGGCGGACAGGATGTCA+AGG 0.620017 3_2:+22437733 Msa0399340:CDS
GAAAATGGTTCTGGAGATGG+TGG 0.624903 3_2:+22437172 Msa0399340:CDS
ACATATACTCAAAAGTGGAG+GGG 0.624993 3_2:-22443707 None:intergenic
GAGAGAGTACGTATTTGTTG+CGG 0.627054 3_2:-22434206 None:intergenic
AAACCTGACAGATAGACAGC+GGG 0.627667 3_2:+22443482 Msa0399340:CDS
TTTGTTGCGGAGGAGATTAG+GGG 0.633616 3_2:-22434193 None:intergenic
ACATTTGCAGAGTATGCAGT+CGG 0.639216 3_2:+22443584 Msa0399340:three_prime_UTR
AATATTCATTAACATAAAGG+GGG 0.639324 3_2:+22443834 Msa0399340:three_prime_UTR
ATACTGCAACAGGTGCATGA+AGG 0.640492 3_2:-22443794 None:intergenic
AGTTTCTGCAAGTCATGCAA+GGG 0.642039 3_2:+22438877 Msa0399340:CDS
TCAGGTCCCAACTCTTACTG+GGG 0.642067 3_2:+22442636 Msa0399340:CDS
GTGCGTCCTGGAACACAGCA+CGG 0.645003 3_2:+22442759 Msa0399340:CDS
ACAGTAACATAAAGATCACC+AGG 0.657451 3_2:-22439666 None:intergenic
TATGAAGGAGTGTTGCAAAG+GGG 0.658667 3_2:+22434327 Msa0399340:CDS
AGCAGCAAATACTTATTTGG+GGG 0.661568 3_2:+22435292 Msa0399340:CDS
AATATTATATACAACAGACT+AGG 0.665828 3_2:-22443817 None:intergenic
TGGTGTTAAATTGAAGAACT+GGG 0.678693 3_2:+22435259 Msa0399340:CDS
AGTGGTGGTGCAGATCCCGA+AGG 0.680845 3_2:+22439636 Msa0399340:CDS
GCGTTGTAAAGGGTCAGGAG+TGG 0.682796 3_2:+22438096 Msa0399340:CDS
AACACAGCACGGTCAGAAGG+TGG 0.683119 3_2:+22442770 Msa0399340:CDS
GATCCCGAAGGAGATCGACC+TGG 0.690632 3_2:+22439648 Msa0399340:CDS
AATAAAGAAAGCATACTATG+GGG 0.714970 3_2:+22435614 Msa0399340:CDS
GAAACCTGACAGATAGACAG+CGG 0.716980 3_2:+22443481 Msa0399340:intron
GTTTCAGGTCTTGTACCAGG+AGG 0.745812 3_2:-22438067 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATTTAAATAAATTAAAAA+AGG - chr3_2:22439146-22439165 None:intergenic 0.0%
!! ATTAAATATAAAATTTATTA+AGG + chr3_2:22440326-22440345 Msa0399340:intron 0.0%
!!! TTTTAAAGTAATTTTCATTA+TGG + chr3_2:22434853-22434872 Msa0399340:intron 10.0%
!! ATTTGATATTCAATAATTTA+GGG - chr3_2:22434917-22434936 None:intergenic 10.0%
!! AATTTGATATTCAATAATTT+AGG - chr3_2:22434918-22434937 None:intergenic 10.0%
!! TATTATTAGTAAACATTATT+AGG + chr3_2:22436559-22436578 Msa0399340:intron 10.0%
!! ATATTAATTTATATTGTGTT+TGG + chr3_2:22437533-22437552 Msa0399340:intron 10.0%
!! TTACTTATATATATATATGT+TGG - chr3_2:22438401-22438420 None:intergenic 10.0%
!! TTTAAATAAATTAAAAAAGG+TGG - chr3_2:22439143-22439162 None:intergenic 10.0%
!! CAATTATTTAAATAGTTAAT+TGG - chr3_2:22440241-22440260 None:intergenic 10.0%
!! TAATTCTCAATTAATTTATA+AGG + chr3_2:22443759-22443778 Msa0399340:three_prime_UTR 10.0%
!! TATAATATTCATTAACATAA+AGG + chr3_2:22443831-22443850 Msa0399340:three_prime_UTR 10.0%
!! ATAATATTCATTAACATAAA+GGG + chr3_2:22443832-22443851 Msa0399340:three_prime_UTR 10.0%
!! CTGAAAAAAATTATGAAATT+GGG - chr3_2:22433927-22433946 None:intergenic 15.0%
!! TCTGAAAAAAATTATGAAAT+TGG - chr3_2:22433928-22433947 None:intergenic 15.0%
!!! TTTTATATTGATTTTTTTGG+TGG + chr3_2:22434285-22434304 Msa0399340:intron 15.0%
!!! TCAATTTTAAGTTTTTAACA+AGG - chr3_2:22435750-22435769 None:intergenic 15.0%
!! CATTAAAATAATAATACAAG+AGG - chr3_2:22436015-22436034 None:intergenic 15.0%
!! TAATGTTTACTAATAATAGT+AGG - chr3_2:22436557-22436576 None:intergenic 15.0%
!! CTTATTTATTTATGTTTAAC+CGG + chr3_2:22437089-22437108 Msa0399340:intron 15.0%
!!! TAATTTTGTTGTTAATTTGA+TGG + chr3_2:22438186-22438205 Msa0399340:intron 15.0%
!! TTGATTAAAATTTAGAGATA+CGG + chr3_2:22438347-22438366 Msa0399340:intron 15.0%
!! TATAAGTAAAATAGAGTTTA+TGG + chr3_2:22438412-22438431 Msa0399340:intron 15.0%
!! TATCTATTATTATGATTTCA+GGG - chr3_2:22438742-22438761 None:intergenic 15.0%
!! TTATCTATTATTATGATTTC+AGG - chr3_2:22438743-22438762 None:intergenic 15.0%
!! TCATAATAATAGATAATGAT+AGG + chr3_2:22438747-22438766 Msa0399340:intron 15.0%
!!! ATATTAATAATTGTCTTGTT+TGG - chr3_2:22439432-22439451 None:intergenic 15.0%
!!! ACATATTTTTATACATTTGA+AGG + chr3_2:22439579-22439598 Msa0399340:intron 15.0%
!!! CATATTTTTATACATTTGAA+GGG + chr3_2:22439580-22439599 Msa0399340:intron 15.0%
!!! AACTTTCTTTTTTCTTTTTT+GGG + chr3_2:22439941-22439960 Msa0399340:intron 15.0%
!!! AAAAGCAGATTTATTATTTT+TGG - chr3_2:22440445-22440464 None:intergenic 15.0%
!! GATTATAACTTATAAGTAAT+AGG - chr3_2:22440987-22441006 None:intergenic 15.0%
!! GTTAGTTAAATAAGTTAATT+AGG - chr3_2:22441037-22441056 None:intergenic 15.0%
!! GTTAGTTAAATAAGTTAATT+AGG - chr3_2:22441037-22441056 None:intergenic 15.0%
!!! GGTTTTTTTATATTTTAGAA+CGG + chr3_2:22441662-22441681 Msa0399340:intron 15.0%
!! AAAAAAGTGATAAGTTTATT+TGG - chr3_2:22441764-22441783 None:intergenic 15.0%
!! AAATCCAAAAAAAATAAACT+TGG + chr3_2:22441812-22441831 Msa0399340:intron 15.0%
!!! TATAACAGTTTCTTAATTTT+TGG + chr3_2:22441839-22441858 Msa0399340:intron 15.0%
!!! ATAACAGTTTCTTAATTTTT+GGG + chr3_2:22441840-22441859 Msa0399340:intron 15.0%
!! TAATATTCATTAACATAAAG+GGG + chr3_2:22443833-22443852 Msa0399340:three_prime_UTR 15.0%
!!! TTTTTGTTTGTAGAATACAA+AGG - chr3_2:22433965-22433984 None:intergenic 20.0%
!! TTTCACTCTTCAAAAAATTT+AGG + chr3_2:22434075-22434094 Msa0399340:five_prime_UTR 20.0%
!! TTCACTCTTCAAAAAATTTA+GGG + chr3_2:22434076-22434095 Msa0399340:five_prime_UTR 20.0%
!!! AATTTAGGGTTTTTCAATTT+AGG + chr3_2:22434090-22434109 Msa0399340:five_prime_UTR 20.0%
!!! ATTTAGGGTTTTTCAATTTA+GGG + chr3_2:22434091-22434110 Msa0399340:five_prime_UTR 20.0%
!! AAAATAATTTCCAGTAACTT+TGG - chr3_2:22434391-22434410 None:intergenic 20.0%
!!! ACTTCTAAAAGTGATTATTT+TGG - chr3_2:22434549-22434568 None:intergenic 20.0%
!!! TTTAGAAGTTTTGAAATTGA+TGG + chr3_2:22434570-22434589 Msa0399340:intron 20.0%
!!! TTAATTGACTTGATTGTTAT+TGG + chr3_2:22434630-22434649 Msa0399340:intron 20.0%
!!! AAAGTGATTATTTTATCACA+AGG - chr3_2:22434722-22434741 None:intergenic 20.0%
!!! TTTTATAATCTGTAACAAAC+AGG + chr3_2:22434943-22434962 Msa0399340:intron 20.0%
!!! TCATTTTCTCAAATTATCAT+CGG - chr3_2:22435017-22435036 None:intergenic 20.0%
!!! TGTCCATTATTATTTTGATT+TGG + chr3_2:22435409-22435428 Msa0399340:intron 20.0%
!! TCACCAAATCAAAATAATAA+TGG - chr3_2:22435415-22435434 None:intergenic 20.0%
!!! AAATAAAGAAAGCATACTAT+GGG + chr3_2:22435613-22435632 Msa0399340:CDS 20.0%
!!! TCTTAGGTCAAATATTTTTT+AGG + chr3_2:22435672-22435691 Msa0399340:intron 20.0%
!!! CTTAGGTCAAATATTTTTTA+GGG + chr3_2:22435673-22435692 Msa0399340:intron 20.0%
!!! TTAGGTCAAATATTTTTTAG+GGG + chr3_2:22435674-22435693 Msa0399340:intron 20.0%
!!! TTATTTCTAATTTCATATGC+TGG + chr3_2:22435799-22435818 Msa0399340:intron 20.0%
!!! TATTTCTAATTTCATATGCT+GGG + chr3_2:22435800-22435819 Msa0399340:intron 20.0%
!! TTTAATGCAAATAGAAAACA+TGG - chr3_2:22435943-22435962 None:intergenic 20.0%
!! TTTCTTTCTTTCTTCATATA+TGG + chr3_2:22436126-22436145 Msa0399340:intron 20.0%
!! AATGCAATTACATAAAGAAT+GGG - chr3_2:22436420-22436439 None:intergenic 20.0%
!!! TAGGCAGTTATTATTTTATT+AGG + chr3_2:22436578-22436597 Msa0399340:intron 20.0%
!! ACTATGTTGAGATAAATAAA+AGG + chr3_2:22436845-22436864 Msa0399340:intron 20.0%
!! GAAAATAAGAACATAAGTAA+AGG + chr3_2:22436945-22436964 Msa0399340:intron 20.0%
!!! CATATATCTCTACAAATTTT+AGG - chr3_2:22437001-22437020 None:intergenic 20.0%
!! ATATATGAGAGAAAAAAGTA+GGG + chr3_2:22437014-22437033 Msa0399340:intron 20.0%
!!! AGATTTCTTTCCTTTTTATT+AGG + chr3_2:22437285-22437304 Msa0399340:intron 20.0%
!!! AAATTAATATGCCTTTTACT+GGG - chr3_2:22437523-22437542 None:intergenic 20.0%
!!! TAAATTAATATGCCTTTTAC+TGG - chr3_2:22437524-22437543 None:intergenic 20.0%
!!! GTTTTTATTTCTATTTGGAT+TGG + chr3_2:22437759-22437778 Msa0399340:intron 20.0%
!!! TTTTGTTGAACTTTCTTTTA+TGG + chr3_2:22437842-22437861 Msa0399340:CDS 20.0%
!! CATCTATATTCTATGAATTA+AGG + chr3_2:22437948-22437967 Msa0399340:intron 20.0%
!! AACATTAACATTGTTAAAGA+AGG - chr3_2:22438155-22438174 None:intergenic 20.0%
!! AACAAACAGATTCTTATATA+AGG + chr3_2:22438451-22438470 Msa0399340:intron 20.0%
!! TTCTTATATAAGGTGAAAAT+TGG + chr3_2:22438461-22438480 Msa0399340:intron 20.0%
!!! TTTGCTTCTTATTATTTTTC+TGG + chr3_2:22438844-22438863 Msa0399340:intron 20.0%
!! AAATAAATTAAAAAAGGTGG+TGG - chr3_2:22439140-22439159 None:intergenic 20.0%
!! TTTCTAATCTTTCAGAAAAA+AGG + chr3_2:22439327-22439346 Msa0399340:intron 20.0%
!! AATATCAGAATTCTGAATTA+TGG - chr3_2:22439380-22439399 None:intergenic 20.0%
!! ACACAATACATAATATGAAA+AGG - chr3_2:22439458-22439477 None:intergenic 20.0%
!! ATTATGTATTGTGTTCAATT+AGG + chr3_2:22439464-22439483 Msa0399340:intron 20.0%
!!! TTAATCTTTTCATAGTTTTG+AGG + chr3_2:22439702-22439721 Msa0399340:intron 20.0%
!! AATCAAGAATTTCTTCATTA+AGG - chr3_2:22439877-22439896 None:intergenic 20.0%
!! CAAAAAAGAAAAAAGAAAGT+TGG - chr3_2:22439942-22439961 None:intergenic 20.0%
!!! CAACTTTCTTTTTTCTTTTT+TGG + chr3_2:22439940-22439959 Msa0399340:intron 20.0%
!!! ACTTTCTTTTTTCTTTTTTG+GGG + chr3_2:22439942-22439961 Msa0399340:intron 20.0%
!! AAAAAAAATATAACTGTCTC+TGG - chr3_2:22440106-22440125 None:intergenic 20.0%
!! ATAACTTATAAGTAATAGGA+AGG - chr3_2:22440983-22441002 None:intergenic 20.0%
!!! TTTTGAAGTTAAAACGTTTA+TGG - chr3_2:22441275-22441294 None:intergenic 20.0%
!! TTCATAAACATTACTGAAAA+TGG + chr3_2:22441641-22441660 Msa0399340:intron 20.0%
!!! ATTGCCAAGTTTATTTTTTT+TGG - chr3_2:22441819-22441838 None:intergenic 20.0%
!!! TAACAGTTTCTTAATTTTTG+GGG + chr3_2:22441841-22441860 Msa0399340:intron 20.0%
!! CATATTGTGGAATTATTTAA+GGG - chr3_2:22441980-22441999 None:intergenic 20.0%
!! TCATATTGTGGAATTATTTA+AGG - chr3_2:22441981-22442000 None:intergenic 20.0%
!!! TAAGTCTTATAAATTAGAAC+TGG + chr3_2:22442037-22442056 Msa0399340:intron 20.0%
!!! GATTATTTTAAGTGATGTTT+AGG - chr3_2:22442574-22442593 None:intergenic 20.0%
!!! TATATTTTCTGTCTTTTTTC+AGG + chr3_2:22442594-22442613 Msa0399340:intron 20.0%
!! TAACTGATGAAAGTTTAAAT+GGG + chr3_2:22442720-22442739 Msa0399340:intron 20.0%
!! ATTGTTTATGGATGATAATA+TGG + chr3_2:22442822-22442841 Msa0399340:intron 20.0%
!! TTGTTTATGGATGATAATAT+GGG + chr3_2:22442823-22442842 Msa0399340:intron 20.0%
!! AAAAAAAATGTAATTTCCGA+TGG + chr3_2:22443214-22443233 Msa0399340:intron 20.0%
!! AATCATTTACAATCAATTTG+TGG + chr3_2:22443608-22443627 Msa0399340:three_prime_UTR 20.0%
!! ATATTACATATACTCAAAAG+TGG - chr3_2:22443715-22443734 None:intergenic 20.0%
!! AATATTATATACAACAGACT+AGG - chr3_2:22443820-22443839 None:intergenic 20.0%
!! AATATTCATTAACATAAAGG+GGG + chr3_2:22443834-22443853 Msa0399340:three_prime_UTR 20.0%
! GAATACAAAGGAGAAAAAAA+AGG - chr3_2:22433953-22433972 None:intergenic 25.0%
!!! TTACGCTTTTTGAGAAATTT+TGG + chr3_2:22434245-22434264 Msa0399340:intron 25.0%
!! ACTGGAAATTATTTTCACAA+TGG + chr3_2:22434396-22434415 Msa0399340:CDS 25.0%
!!! AAATCTGTTTTTTATCATGC+TGG + chr3_2:22434440-22434459 Msa0399340:intron 25.0%
! ATCAAGTCAATTAAATCAGA+GGG - chr3_2:22434624-22434643 None:intergenic 25.0%
! AATCAAGTCAATTAAATCAG+AGG - chr3_2:22434625-22434644 None:intergenic 25.0%
!!! ATGTCTTTTTTTCATAGCTA+AGG - chr3_2:22434969-22434988 None:intergenic 25.0%
! ATATAGTGAAAGAAAAGACT+CGG - chr3_2:22435155-22435174 None:intergenic 25.0%
! AATATTAGCAACAACATTAG+CGG - chr3_2:22435209-22435228 None:intergenic 25.0%
! TAACAAAATCAAGAACGAAA+TGG - chr3_2:22435375-22435394 None:intergenic 25.0%
!! GAAATAAAGAAAGCATACTA+TGG + chr3_2:22435612-22435631 Msa0399340:CDS 25.0%
!! AATAAAGAAAGCATACTATG+GGG + chr3_2:22435614-22435633 Msa0399340:CDS 25.0%
! ACCTAAGAATAGATGTATAT+TGG - chr3_2:22435660-22435679 None:intergenic 25.0%
!! AGAAAATGCAAAGTTTTACA+AGG - chr3_2:22435718-22435737 None:intergenic 25.0%
!!! ATACTTGTGTTATTTTCAAG+TGG + chr3_2:22435848-22435867 Msa0399340:intron 25.0%
!! CTGATATATTCGCAATTTTT+AGG - chr3_2:22436062-22436081 None:intergenic 25.0%
! AGAAATTTCAAGAAGTTTCA+AGG + chr3_2:22436287-22436306 Msa0399340:CDS 25.0%
! GAAATTTCAAGAAGTTTCAA+GGG + chr3_2:22436288-22436307 Msa0399340:CDS 25.0%
! ATGCAATTACATAAAGAATG+GGG - chr3_2:22436419-22436438 None:intergenic 25.0%
! CAATGCAATTACATAAAGAA+TGG - chr3_2:22436421-22436440 None:intergenic 25.0%
! TCTTTATGTAATTGCATTGT+AGG + chr3_2:22436422-22436441 Msa0399340:intron 25.0%
! AAGTAAAGGACATTTGTTTA+TGG + chr3_2:22436959-22436978 Msa0399340:intron 25.0%
! GATATATGAGAGAAAAAAGT+AGG + chr3_2:22437013-22437032 Msa0399340:intron 25.0%
! ACTGTAGTATAAATTTCATC+AGG + chr3_2:22437317-22437336 Msa0399340:intron 25.0%
!! AATTAATATGCCTTTTACTG+GGG - chr3_2:22437522-22437541 None:intergenic 25.0%
!! ATATACATTCTAGTCTTCAA+TGG - chr3_2:22437645-22437664 None:intergenic 25.0%
!!! GGTTCGTTTTTATTTCTATT+TGG + chr3_2:22437754-22437773 Msa0399340:intron 25.0%
!! GTATGTTAAGAATTTGTTTG+AGG + chr3_2:22437792-22437811 Msa0399340:intron 25.0%
!! CATATCTGTTTGAAATGTAA+TGG - chr3_2:22437892-22437911 None:intergenic 25.0%
!!! GAAGGTTAAATTTTAATTCC+AGG - chr3_2:22438137-22438156 None:intergenic 25.0%
! ATGGCTATGTTATATATATC+CGG + chr3_2:22438205-22438224 Msa0399340:intron 25.0%
! TACTTAAAACATGTGATTTG+CGG - chr3_2:22438510-22438529 None:intergenic 25.0%
!!! CAACTATAGTATTGATTCTA+TGG + chr3_2:22438573-22438592 Msa0399340:intron 25.0%
!!! TATAGTATTGATTCTATGGA+GGG + chr3_2:22438577-22438596 Msa0399340:intron 25.0%
!! ACTTTTATTGCACAAATGTA+AGG + chr3_2:22438651-22438670 Msa0399340:intron 25.0%
! AATATCCAATTTAACTGACT+TGG - chr3_2:22438923-22438942 None:intergenic 25.0%
! GTCAGTTAAATTGGATATTA+TGG + chr3_2:22438924-22438943 Msa0399340:CDS 25.0%
!!! TTTTATTTAGTCTGAAAAGC+AGG - chr3_2:22439245-22439264 None:intergenic 25.0%
! TAATTTGACTCCATCAATTA+TGG + chr3_2:22439404-22439423 Msa0399340:intron 25.0%
!! GTTATGAGTTTAATGAGTTT+TGG + chr3_2:22439488-22439507 Msa0399340:intron 25.0%
! AAGGATGAAAAAATGATTTG+AGG - chr3_2:22439761-22439780 None:intergenic 25.0%
! GAATATCATTGGAATTGAAA+GGG + chr3_2:22440784-22440803 Msa0399340:intron 25.0%
! AAAATGATAGATCTACTAAC+GGG - chr3_2:22441061-22441080 None:intergenic 25.0%
! CAAAATGATAGATCTACTAA+CGG - chr3_2:22441062-22441081 None:intergenic 25.0%
!!! TAGAGTTAACTACTGTTTTT+AGG + chr3_2:22441149-22441168 Msa0399340:intron 25.0%
!! AGTATCAAACTTTTATTCTC+AGG + chr3_2:22441689-22441708 Msa0399340:intron 25.0%
! CATCATTCAATTCTTCAATT+TGG - chr3_2:22441932-22441951 None:intergenic 25.0%
!! TTTCATTGATTAAACAGACT+CGG - chr3_2:22442326-22442345 None:intergenic 25.0%
!!! TTATTTTGATGTGTAGTGAT+TGG + chr3_2:22442473-22442492 Msa0399340:intron 25.0%
!! GTATAAGTTTTACCACATTT+TGG + chr3_2:22442691-22442710 Msa0399340:intron 25.0%
! GTAACTGATGAAAGTTTAAA+TGG + chr3_2:22442719-22442738 Msa0399340:intron 25.0%
! AACTGATGAAAGTTTAAATG+GGG + chr3_2:22442721-22442740 Msa0399340:intron 25.0%
! ACCAAAAGATATAACTCATT+AGG + chr3_2:22442926-22442945 Msa0399340:CDS 25.0%
! TTTGATGTCATTATTCAATG+TGG + chr3_2:22442997-22443016 Msa0399340:intron 25.0%
! AACTAATCGAAAATCATTTC+TGG + chr3_2:22443113-22443132 Msa0399340:intron 25.0%
!! GTTGGTACTCAAATTTTAAA+AGG + chr3_2:22443191-22443210 Msa0399340:intron 25.0%
!!! CTTTTTGCTTTTATCATAAG+TGG + chr3_2:22443879-22443898 Msa0399340:three_prime_UTR 25.0%
! GGAACCTTGATAAATTATAT+TGG + chr3_2:22443903-22443922 Msa0399340:three_prime_UTR 25.0%
! TGCTCCAATATAATTTATCA+AGG - chr3_2:22443910-22443929 None:intergenic 25.0%
! TAAATTATATTGGAGCATGA+TGG + chr3_2:22443913-22443932 Msa0399340:three_prime_UTR 25.0%
ATGAAATTGGGTTAATCTTG+TGG - chr3_2:22433915-22433934 None:intergenic 30.0%
! AAGGTTCTAGTGTTTAAGAA+AGG - chr3_2:22434053-22434072 None:intergenic 30.0%
!!! TTTTTTGAAGAGTGAAACGA+AGG - chr3_2:22434072-22434091 None:intergenic 30.0%
!!! ATTGATTTTTTTGGTGGTGT+TGG + chr3_2:22434291-22434310 Msa0399340:intron 30.0%
!! TGATTTGGCCATTTTAACAA+TGG + chr3_2:22434469-22434488 Msa0399340:intron 30.0%
!! CATTTTAACAATGGATGAGT+GGG + chr3_2:22434478-22434497 Msa0399340:intron 30.0%
TCAAGTCAATTAAATCAGAG+GGG - chr3_2:22434623-22434642 None:intergenic 30.0%
TATAGTGAAAGAAAAGACTC+GGG - chr3_2:22435154-22435173 None:intergenic 30.0%
! ATGGTGTTAAATTGAAGAAC+TGG + chr3_2:22435258-22435277 Msa0399340:CDS 30.0%
! TGGTGTTAAATTGAAGAACT+GGG + chr3_2:22435259-22435278 Msa0399340:CDS 30.0%
ATTTATACCTGATCCATGAA+TGG - chr3_2:22435327-22435346 None:intergenic 30.0%
AAAAAGTCAGTGACATGTAA+TGG - chr3_2:22435510-22435529 None:intergenic 30.0%
! AAGGACTTTTATGATGTTCT+TGG + chr3_2:22435564-22435583 Msa0399340:CDS 30.0%
GCCAATATACATCTATTCTT+AGG + chr3_2:22435656-22435675 Msa0399340:intron 30.0%
ATAATAGTCTAAATTGCACG+AGG + chr3_2:22435881-22435900 Msa0399340:intron 30.0%
ATACAAGAGGACTTATATTC+TGG - chr3_2:22436002-22436021 None:intergenic 30.0%
AAGAAGGAAGGAAAAATTTG+AGG - chr3_2:22436088-22436107 None:intergenic 30.0%
AAGAGAGAAAGAAAGAAAGA+AGG - chr3_2:22436104-22436123 None:intergenic 30.0%
CACTAAATAGTATCAAGAAC+AGG - chr3_2:22436338-22436357 None:intergenic 30.0%
CTGTTCTTGATACTATTTAG+TGG + chr3_2:22436336-22436355 Msa0399340:intron 30.0%
!! ATGATTTGTGAACTGACTTT+TGG + chr3_2:22436377-22436396 Msa0399340:intron 30.0%
!! AATTGCATTGTAGGTTTTGA+AGG + chr3_2:22436431-22436450 Msa0399340:intron 30.0%
TAGATAAGTAGGAAATCTGA+AGG + chr3_2:22436669-22436688 Msa0399340:intron 30.0%
GTAACAAATAAGCACATAGT+TGG + chr3_2:22436914-22436933 Msa0399340:intron 30.0%
GACATTTGTTTATGGAGATT+GGG + chr3_2:22436967-22436986 Msa0399340:intron 30.0%
ACATTTGTTTATGGAGATTG+GGG + chr3_2:22436968-22436987 Msa0399340:intron 30.0%
! AAAAAAGTAGGGAATGGATT+GGG + chr3_2:22437025-22437044 Msa0399340:intron 30.0%
GGAACTAATTTAGATGAAAC+CGG - chr3_2:22437111-22437130 None:intergenic 30.0%
TCATCTAAATTAGTTCCACA+TGG + chr3_2:22437114-22437133 Msa0399340:intron 30.0%
! TTAATCCTGTAATAACTTGC+CGG + chr3_2:22437227-22437246 Msa0399340:intron 30.0%
GATATAAAAGTTGAAGAGAC+CGG - chr3_2:22437249-22437268 None:intergenic 30.0%
AAATGCTTGAGTCTTAAACA+TGG - chr3_2:22437480-22437499 None:intergenic 30.0%
!!! TCTTTTTTTTCCCCAGTAAA+AGG + chr3_2:22437509-22437528 Msa0399340:intron 30.0%
CAATGGAATGTATAACTCAA+GGG - chr3_2:22437628-22437647 None:intergenic 30.0%
TCAATGGAATGTATAACTCA+AGG - chr3_2:22437629-22437648 None:intergenic 30.0%
! TTTTCCATGACCTCTTTAAT+CGG + chr3_2:22437708-22437727 Msa0399340:CDS 30.0%
! GATATGATTTGTAACACTTG+TGG + chr3_2:22437906-22437925 Msa0399340:CDS 30.0%
AAGATCACAAATTCTCTCTT+TGG + chr3_2:22438016-22438035 Msa0399340:intron 30.0%
!! CTATAGTATTGATTCTATGG+AGG + chr3_2:22438576-22438595 Msa0399340:intron 30.0%
GTTAAATTGGATATTATGGC+TGG + chr3_2:22438928-22438947 Msa0399340:CDS 30.0%
!! CTTTGCTATTATGTGACATA+TGG + chr3_2:22438980-22438999 Msa0399340:intron 30.0%
!! AATTAAAAAAGGTGGTGGAT+TGG - chr3_2:22439135-22439154 None:intergenic 30.0%
TGACAACAATGAAACCATTA+AGG + chr3_2:22439605-22439624 Msa0399340:CDS 30.0%
ACCATTAAGGTTTACAAAAG+TGG + chr3_2:22439618-22439637 Msa0399340:CDS 30.0%
!! ACCACTTTTGTAAACCTTAA+TGG - chr3_2:22439622-22439641 None:intergenic 30.0%
ATTAAGGTTTACAAAAGTGG+TGG + chr3_2:22439621-22439640 Msa0399340:CDS 30.0%
TGATCTTTATGTTACTGTCA+AGG + chr3_2:22439671-22439690 Msa0399340:CDS 30.0%
GAGGAGATACAAAAGAAAAA+GGG - chr3_2:22439734-22439753 None:intergenic 30.0%
TGAGGAGATACAAAAGAAAA+AGG - chr3_2:22439735-22439754 None:intergenic 30.0%
TTCTAAACCCAAATGATCTT+GGG - chr3_2:22440040-22440059 None:intergenic 30.0%
TTTCTAAACCCAAATGATCT+TGG - chr3_2:22440041-22440060 None:intergenic 30.0%
AAAATATAACTGTCTCTGGT+GGG - chr3_2:22440102-22440121 None:intergenic 30.0%
AAAAATATAACTGTCTCTGG+TGG - chr3_2:22440103-22440122 None:intergenic 30.0%
TTTATTATTCACTGCGTGAA+AGG + chr3_2:22440462-22440481 Msa0399340:intron 30.0%
CTGTAGATAATGAGATCATA+CGG - chr3_2:22440711-22440730 None:intergenic 30.0%
TTTGGAGATTTCAGTGATAA+TGG + chr3_2:22440762-22440781 Msa0399340:intron 30.0%
!! CAGTGATAATGGAATATCAT+TGG + chr3_2:22440773-22440792 Msa0399340:intron 30.0%
GGAATATCATTGGAATTGAA+AGG + chr3_2:22440783-22440802 Msa0399340:intron 30.0%
CTAAGAATAGGAAGAATGTA+TGG + chr3_2:22440907-22440926 Msa0399340:intron 30.0%
TGGAAAGAATTTAAATTCCC+TGG + chr3_2:22440927-22440946 Msa0399340:intron 30.0%
ATAAGTAATAGGAAGGAGAA+AGG - chr3_2:22440976-22440995 None:intergenic 30.0%
TGAAGTTAAAACGTTTATGG+TGG - chr3_2:22441272-22441291 None:intergenic 30.0%
AGGAGAGTCATTAAAATAGT+GGG - chr3_2:22441318-22441337 None:intergenic 30.0%
!!! GGTTTTCATCTTAATTTGCT+AGG + chr3_2:22441710-22441729 Msa0399340:intron 30.0%
CTAGGCATAATGTAATTTCA+AGG + chr3_2:22441728-22441747 Msa0399340:intron 30.0%
TTGGTCAATGATTCATATTG+TGG - chr3_2:22441993-22442012 None:intergenic 30.0%
AATCTGTGAATTTGAGAGTT+TGG + chr3_2:22442111-22442130 Msa0399340:intron 30.0%
AACTCAGAATCAGTTTAGTT+AGG + chr3_2:22442149-22442168 Msa0399340:intron 30.0%
!! GAATTCTCTCTGAAATTTAC+AGG + chr3_2:22442384-22442403 Msa0399340:intron 30.0%
! GTAGTTTGAAATTTCCTGAA+TGG + chr3_2:22442406-22442425 Msa0399340:intron 30.0%
!! GAGCAAGTTGATATTGTTTA+TGG + chr3_2:22442810-22442829 Msa0399340:intron 30.0%
! GCCTAATGAGTTATATCTTT+TGG - chr3_2:22442930-22442949 None:intergenic 30.0%
!! GATTTTCGATTAGTTCCTTT+CGG - chr3_2:22443108-22443127 None:intergenic 30.0%
! TAATCGAAAATCATTTCTGG+TGG + chr3_2:22443116-22443135 Msa0399340:intron 30.0%
!! AATCGTTTTTCGTTTTCGAA+GGG - chr3_2:22443307-22443326 None:intergenic 30.0%
!! AAATCGTTTTTCGTTTTCGA+AGG - chr3_2:22443308-22443327 None:intergenic 30.0%
CAATATGAATCTTCCGATAA+AGG + chr3_2:22443534-22443553 Msa0399340:CDS 30.0%
TTCTACAAAACTTCAATAGC+AGG - chr3_2:22443656-22443675 None:intergenic 30.0%
TACATATACTCAAAAGTGGA+GGG - chr3_2:22443711-22443730 None:intergenic 30.0%
TTACATATACTCAAAAGTGG+AGG - chr3_2:22443712-22443731 None:intergenic 30.0%
!! TTTGCTTTTATCATAAGTGG+AGG + chr3_2:22443882-22443901 Msa0399340:three_prime_UTR 30.0%
TTTGGGGAAGATGATGATTA+GGG - chr3_2:22434131-22434150 None:intergenic 35.0%
ATTTGGGGAAGATGATGATT+AGG - chr3_2:22434132-22434151 None:intergenic 35.0%
TAATCATCATCTTCCCCAAA+TGG + chr3_2:22434131-22434150 Msa0399340:exon 35.0%
!! CGCTTTTTGAGAAATTTTGG+TGG + chr3_2:22434248-22434267 Msa0399340:intron 35.0%
! GGTGAATTTCAGGTATATGA+AGG + chr3_2:22434312-22434331 Msa0399340:intron 35.0%
!! TATATGAAGGAGTGTTGCAA+AGG + chr3_2:22434325-22434344 Msa0399340:CDS 35.0%
!! ATATGAAGGAGTGTTGCAAA+GGG + chr3_2:22434326-22434345 Msa0399340:CDS 35.0%
GGTTATAGGACATTGAATTC+AGG + chr3_2:22434348-22434367 Msa0399340:CDS 35.0%
AATCGTTCTTCCAAAGTTAC+TGG + chr3_2:22434378-22434397 Msa0399340:CDS 35.0%
!! TCATGCTGGTTTGATTGATT+TGG + chr3_2:22434454-22434473 Msa0399340:intron 35.0%
CCACTCATCCATTGTTAAAA+TGG - chr3_2:22434480-22434499 None:intergenic 35.0%
!! CCATTTTAACAATGGATGAG+TGG + chr3_2:22434477-22434496 Msa0399340:intron 35.0%
AAGTCAATTAAATCAGAGGG+GGG - chr3_2:22434621-22434640 None:intergenic 35.0%
CAAGTCAATTAAATCAGAGG+GGG - chr3_2:22434622-22434641 None:intergenic 35.0%
GGAGCAGCAAATACTTATTT+GGG + chr3_2:22435290-22435309 Msa0399340:CDS 35.0%
GAGCAGCAAATACTTATTTG+GGG + chr3_2:22435291-22435310 Msa0399340:CDS 35.0%
AGCAGCAAATACTTATTTGG+GGG + chr3_2:22435292-22435311 Msa0399340:CDS 35.0%
TCATAAAAGTCCTTTGCCAA+TGG - chr3_2:22435558-22435577 None:intergenic 35.0%
GAATAGATGTATATTGGCAC+TGG - chr3_2:22435654-22435673 None:intergenic 35.0%
! GTTTTACAAGGAAATCAGTC+TGG - chr3_2:22435706-22435725 None:intergenic 35.0%
GAGAAAGAAAGAAAGAAGGA+AGG - chr3_2:22436100-22436119 None:intergenic 35.0%
AAACAAAGATGATCCTGAAG+CGG + chr3_2:22436261-22436280 Msa0399340:CDS 35.0%
! TGAAATTTCTTTTCCGCTTC+AGG - chr3_2:22436277-22436296 None:intergenic 35.0%
!! ATCAAGAACAGGAGCATTAA+GGG - chr3_2:22436327-22436346 None:intergenic 35.0%
!! TATCAAGAACAGGAGCATTA+AGG - chr3_2:22436328-22436347 None:intergenic 35.0%
ACATAAAGAATGGGGAAGAA+AGG - chr3_2:22436411-22436430 None:intergenic 35.0%
! CTTTCCAGTAGTTTTCTCTT+TGG + chr3_2:22436492-22436511 Msa0399340:intron 35.0%
TTGACCAAAGAGAAAACTAC+TGG - chr3_2:22436499-22436518 None:intergenic 35.0%
ATGTGCAACAGTTACGTATT+AGG + chr3_2:22436618-22436637 Msa0399340:intron 35.0%
GGCAGTTATACTAGATAAGT+AGG + chr3_2:22436658-22436677 Msa0399340:intron 35.0%
!! AATGTCGGCTGACATTTTAA+TGG + chr3_2:22436694-22436713 Msa0399340:intron 35.0%
!! ATGTCGGCTGACATTTTAAT+GGG + chr3_2:22436695-22436714 Msa0399340:intron 35.0%
!!! TTTTAATGGGGACTGGTTAT+TGG + chr3_2:22436708-22436727 Msa0399340:intron 35.0%
ATTCCAAGAATTAGAGAGCT+TGG - chr3_2:22436744-22436763 None:intergenic 35.0%
AAGCTCTCTAATTCTTGGAA+TGG + chr3_2:22436743-22436762 Msa0399340:intron 35.0%
CTCAACATAGTGATAGTAAC+TGG - chr3_2:22436836-22436855 None:intergenic 35.0%
GGACATTTGTTTATGGAGAT+TGG + chr3_2:22436966-22436985 Msa0399340:intron 35.0%
TGAGAGAAAAAAGTAGGGAA+TGG + chr3_2:22437019-22437038 Msa0399340:intron 35.0%
GAAAAAAGTAGGGAATGGAT+TGG + chr3_2:22437024-22437043 Msa0399340:intron 35.0%
!! AAAAAGTAGGGAATGGATTG+GGG + chr3_2:22437026-22437045 Msa0399340:intron 35.0%
TTAGTTCCACATGGATATGT+AGG + chr3_2:22437123-22437142 Msa0399340:intron 35.0%
!! GGTTTTGTAAACCGAGAAAA+TGG + chr3_2:22437157-22437176 Msa0399340:CDS 35.0%
ATTTATACTACAGTGCAGAC+TGG - chr3_2:22437311-22437330 None:intergenic 35.0%
GTGCTTGTAAGCATTTAACA+AGG - chr3_2:22437388-22437407 None:intergenic 35.0%
TTAATCTCTCAACTGTGATC+AGG + chr3_2:22437682-22437701 Msa0399340:intron 35.0%
!!! TAATGGTTTTGATGCATCCA+CGG - chr3_2:22437875-22437894 None:intergenic 35.0%
GAGAGAATTTGTGATCTTCA+AGG - chr3_2:22438014-22438033 None:intergenic 35.0%
! AAACCTGTAAGCGTTGTAAA+GGG + chr3_2:22438086-22438105 Msa0399340:CDS 35.0%
! ATGTGATTTGCGGTAATTTG+TGG - chr3_2:22438500-22438519 None:intergenic 35.0%
! ATCACTGTCATTTGGCATAA+TGG - chr3_2:22438541-22438560 None:intergenic 35.0%
!! TCTATGGAGGGATGTTTTAA+TGG + chr3_2:22438589-22438608 Msa0399340:intron 35.0%
TGTTGTATGGAACTGAATGT+TGG + chr3_2:22438681-22438700 Msa0399340:intron 35.0%
CAACTTGAAGCATGTTGATA+TGG + chr3_2:22438772-22438791 Msa0399340:intron 35.0%
AGCAACCAAGTCAGTTAAAT+TGG + chr3_2:22438915-22438934 Msa0399340:CDS 35.0%
AAGCAGGATCTTATAGTTAG+TGG - chr3_2:22439229-22439248 None:intergenic 35.0%
TTGTTTGGCACCATAATTGA+TGG - chr3_2:22439417-22439436 None:intergenic 35.0%
ACAGTAACATAAAGATCACC+AGG - chr3_2:22439669-22439688 None:intergenic 35.0%
! AAAAATGATTTGAGGTCGTG+AGG - chr3_2:22439753-22439772 None:intergenic 35.0%
! TTCATCCTTTTTCTTCTTGC+AGG + chr3_2:22439772-22439791 Msa0399340:intron 35.0%
!! TACTGTTTTAAGCATCACTC+AGG + chr3_2:22439844-22439863 Msa0399340:CDS 35.0%
!! GATCTCGATTTTGACAACTA+TGG - chr3_2:22440014-22440033 None:intergenic 35.0%
AGATCTTACCCAAGATCATT+TGG + chr3_2:22440029-22440048 Msa0399340:intron 35.0%
GATCTTACCCAAGATCATTT+GGG + chr3_2:22440030-22440049 Msa0399340:intron 35.0%
TAAATCGTGAGATCGTAACA+AGG + chr3_2:22440066-22440085 Msa0399340:intron 35.0%
AAGAATAGCAAGCATTTAGC+AGG + chr3_2:22440411-22440430 Msa0399340:intron 35.0%
ATCATTGGAATTGAAAGGGA+TGG + chr3_2:22440788-22440807 Msa0399340:intron 35.0%
TTCAAGAAAGTGAGTTTGTG+AGG + chr3_2:22441216-22441235 Msa0399340:intron 35.0%
AAAGTGAGTTTGTGAGGAAA+AGG + chr3_2:22441222-22441241 Msa0399340:intron 35.0%
AAGTGAGTTTGTGAGGAAAA+GGG + chr3_2:22441223-22441242 Msa0399340:intron 35.0%
! GTTAAAACGTTTATGGTGGA+AGG - chr3_2:22441268-22441287 None:intergenic 35.0%
GGAGAGTCATTAAAATAGTG+GGG - chr3_2:22441317-22441336 None:intergenic 35.0%
GAGGAGAGTCATTAAAATAG+TGG - chr3_2:22441319-22441338 None:intergenic 35.0%
!!! AGTTTCTTAATTTTTGGGGC+TGG + chr3_2:22441845-22441864 Msa0399340:intron 35.0%
!! TTATATCCCATGTCGATTTG+AGG + chr3_2:22441904-22441923 Msa0399340:intron 35.0%
GGAATTATTTAAGGGAAGAG+TGG - chr3_2:22441972-22441991 None:intergenic 35.0%
! GAGTTTGGTAGTATAAGAGA+AGG + chr3_2:22442126-22442145 Msa0399340:intron 35.0%
CAAATTGATACAAGCCATTC+AGG - chr3_2:22442423-22442442 None:intergenic 35.0%
!! TGATGTTTAGGAGTACCATA+AGG - chr3_2:22442562-22442581 None:intergenic 35.0%
!!! TGTCTTTTTTCAGGCCATTT+TGG + chr3_2:22442603-22442622 Msa0399340:intron 35.0%
!!! GTCTTTTTTCAGGCCATTTT+GGG + chr3_2:22442604-22442623 Msa0399340:intron 35.0%
! GATGTTGTTGTTAAGGTTTG+TGG + chr3_2:22442658-22442677 Msa0399340:intron 35.0%
CAGTTACTAAGACCAAAATG+TGG - chr3_2:22442706-22442725 None:intergenic 35.0%
TTGTTTGTCATCCTCTTAAC+AGG + chr3_2:22442896-22442915 Msa0399340:intron 35.0%
TGTTTGTCATCCTCTTAACA+GGG + chr3_2:22442897-22442916 Msa0399340:intron 35.0%
TCAAATCTAACACTCACACT+GGG - chr3_2:22442982-22443001 None:intergenic 35.0%
ATCAAATCTAACACTCACAC+TGG - chr3_2:22442983-22443002 None:intergenic 35.0%
! TTTACTTCGGTCTTTTCCAT+CGG - chr3_2:22443164-22443183 None:intergenic 35.0%
ACCAACAGAATGCTTTACTT+CGG - chr3_2:22443177-22443196 None:intergenic 35.0%
!! AAAAATGCCGTTGGTTCAAA+AGG + chr3_2:22443238-22443257 Msa0399340:intron 35.0%
CCTAGTTAATGTTGTGCATT+CGG + chr3_2:22443272-22443291 Msa0399340:intron 35.0%
TTAATGTTGTGCATTCGGAT+GGG + chr3_2:22443277-22443296 Msa0399340:intron 35.0%
GAACATGTGAAAGTTTCGAT+GGG + chr3_2:22443347-22443366 Msa0399340:intron 35.0%
AACATGTGAAAGTTTCGATG+GGG + chr3_2:22443348-22443367 Msa0399340:intron 35.0%
ACAATCAATTTGTGGCCAAT+CGG + chr3_2:22443616-22443635 Msa0399340:three_prime_UTR 35.0%
ACATATACTCAAAAGTGGAG+GGG - chr3_2:22443710-22443729 None:intergenic 35.0%
! ATTTGTTGCGGAGGAGATTA+GGG - chr3_2:22434197-22434216 None:intergenic 40.0%
! TATTTGTTGCGGAGGAGATT+AGG - chr3_2:22434198-22434217 None:intergenic 40.0%
! GAGAGAGTACGTATTTGTTG+CGG - chr3_2:22434209-22434228 None:intergenic 40.0%
!! TATGAAGGAGTGTTGCAAAG+GGG + chr3_2:22434327-22434346 Msa0399340:CDS 40.0%
CATAGCTTCTCATTCGAAAC+AGG - chr3_2:22434788-22434807 None:intergenic 40.0%
TGTCAGACACTTACATGTGT+TGG + chr3_2:22435084-22435103 Msa0399340:intron 40.0%
TTTCTGACCGAATGCATGTT+CGG - chr3_2:22435113-22435132 None:intergenic 40.0%
ATGCATTCGGTCAGAAATGT+CGG + chr3_2:22435116-22435135 Msa0399340:intron 40.0%
! CACCTTATACTGATTGCAGT+TGG + chr3_2:22435233-22435252 Msa0399340:intron 40.0%
CTCCAACTGCAATCAGTATA+AGG - chr3_2:22435238-22435257 None:intergenic 40.0%
! ATACTGATTGCAGTTGGAGA+TGG + chr3_2:22435239-22435258 Msa0399340:intron 40.0%
! ATTGAAGAACTGGGTGCTAT+TGG + chr3_2:22435268-22435287 Msa0399340:CDS 40.0%
!! TTGAAGAACTGGGTGCTATT+GGG + chr3_2:22435269-22435288 Msa0399340:CDS 40.0%
GGGAGCAGCAAATACTTATT+TGG + chr3_2:22435289-22435308 Msa0399340:CDS 40.0%
ACTAGATCCATTCATGGATC+AGG + chr3_2:22435317-22435336 Msa0399340:CDS 40.0%
!! TGATTTGGTGACAAAGCAGA+TGG + chr3_2:22435424-22435443 Msa0399340:intron 40.0%
! ATTTTCAGCACCATTGGCAA+AGG + chr3_2:22435545-22435564 Msa0399340:intron 40.0%
GGCTAAGAGAGCTGTAAAAA+TGG - chr3_2:22435981-22436000 None:intergenic 40.0%
! GGATCATCTTTGTTTGTGTC+AGG - chr3_2:22436256-22436275 None:intergenic 40.0%
! AGAAGTTTCAAGGGCATATG+AGG + chr3_2:22436297-22436316 Msa0399340:CDS 40.0%
!! TGAACTGACTTTTGGTCTCT+TGG + chr3_2:22436385-22436404 Msa0399340:intron 40.0%
!!! ATTGTAGGTTTTGAAGGACG+AGG + chr3_2:22436437-22436456 Msa0399340:intron 40.0%
! AAAGCGTCAAGAGTATGATC+AGG + chr3_2:22436461-22436480 Msa0399340:CDS 40.0%
TGCAACAGTTACGTATTAGG+AGG + chr3_2:22436621-22436640 Msa0399340:intron 40.0%
TAGGAGGCAGTTATGTTTCT+AGG + chr3_2:22436637-22436656 Msa0399340:intron 40.0%
GGAAATCTGAAGGACAATGT+CGG + chr3_2:22436679-22436698 Msa0399340:intron 40.0%
!! TGTCGGCTGACATTTTAATG+GGG + chr3_2:22436696-22436715 Msa0399340:intron 40.0%
AGACCAAGCTCTCTAATTCT+TGG + chr3_2:22436738-22436757 Msa0399340:intron 40.0%
TTCCACATGGATATGTAGGT+TGG + chr3_2:22437127-22437146 Msa0399340:intron 40.0%
CTCGGTTTACAAAACCTTCA+TGG - chr3_2:22437153-22437172 None:intergenic 40.0%
GTAAACCGAGAAAATGGTTC+TGG + chr3_2:22437163-22437182 Msa0399340:CDS 40.0%
! CATCTCCAGAACCATTTTCT+CGG - chr3_2:22437171-22437190 None:intergenic 40.0%
!! TGCAGACTGGCCTAATAAAA+AGG - chr3_2:22437298-22437317 None:intergenic 40.0%
ACTAACTATCCAACTGCATC+AGG + chr3_2:22437406-22437425 Msa0399340:intron 40.0%
TGTTCCGATTAAAGAGGTCA+TGG - chr3_2:22437715-22437734 None:intergenic 40.0%
GACCTCTTTAATCGGAACAT+TGG + chr3_2:22437716-22437735 Msa0399340:CDS 40.0%
CTCTTTAATCGGAACATTGG+CGG + chr3_2:22437719-22437738 Msa0399340:CDS 40.0%
CTTACGAACGGAACTGAATA+TGG - chr3_2:22437982-22438001 None:intergenic 40.0%
TTACAACGCTTACAGGTTTC+AGG - chr3_2:22438085-22438104 None:intergenic 40.0%
! GAAACCTGTAAGCGTTGTAA+AGG + chr3_2:22438085-22438104 Msa0399340:CDS 40.0%
! TTTAGGATGGAGACTACATG+TGG + chr3_2:22438252-22438271 Msa0399340:intron 40.0%
ACTACATGTGGTGCATGTAA+GGG + chr3_2:22438264-22438283 Msa0399340:intron 40.0%
CTGGCAAAATTGTCAAGGTA+TGG + chr3_2:22438289-22438308 Msa0399340:intron 40.0%
ATGCCAAATGACAGTGATAG+AGG + chr3_2:22438543-22438562 Msa0399340:intron 40.0%
TGCCAAATGACAGTGATAGA+GGG + chr3_2:22438544-22438563 Msa0399340:intron 40.0%
GTAAGGCTTGCATTGTTGTA+TGG + chr3_2:22438668-22438687 Msa0399340:intron 40.0%
TTGGACAGTAGAAAGACAAC+AGG + chr3_2:22438700-22438719 Msa0399340:intron 40.0%
TGGACAGTAGAAAGACAACA+GGG + chr3_2:22438701-22438720 Msa0399340:intron 40.0%
TGTATTAGCTACGAAAGACC+AGG - chr3_2:22438803-22438822 None:intergenic 40.0%
AGTTTCTGCAAGTCATGCAA+GGG + chr3_2:22438877-22438896 Msa0399340:CDS 40.0%
!! TTTAACTGACTTGGTTGCTC+TGG - chr3_2:22438914-22438933 None:intergenic 40.0%
GAGCACAATGCAAAGGAAAT+TGG - chr3_2:22439035-22439054 None:intergenic 40.0%
GAGAACAAGCAGTAACAGAA+AGG + chr3_2:22439295-22439314 Msa0399340:intron 40.0%
TCTGACCTGCAAGAAGAAAA+AGG - chr3_2:22439780-22439799 None:intergenic 40.0%
GAATATCCGATCCTTCTCTA+CGG - chr3_2:22439817-22439836 None:intergenic 40.0%
TCTTGATTCCTTATCCTGTG+CGG + chr3_2:22439889-22439908 Msa0399340:intron 40.0%
! AAGATAATTAGTCTCCGCAC+AGG - chr3_2:22439906-22439925 None:intergenic 40.0%
GAAACGATGCTTAACCATGA+TGG + chr3_2:22439976-22439995 Msa0399340:intron 40.0%
!! ATTTTGACAACTATGGCCCA+CGG - chr3_2:22440007-22440026 None:intergenic 40.0%
!!! GCTTCAAAGCATGTCGTTTT+GGG + chr3_2:22440524-22440543 Msa0399340:intron 40.0%
TGGAATTGAAAGGGATGGTA+TGG + chr3_2:22440793-22440812 Msa0399340:intron 40.0%
GGAATTGAAAGGGATGGTAT+GGG + chr3_2:22440794-22440813 Msa0399340:intron 40.0%
GAATTGAAAGGGATGGTATG+GGG + chr3_2:22440795-22440814 Msa0399340:intron 40.0%
GGCAATGAAATGGAGAAGAT+GGG + chr3_2:22440816-22440835 Msa0399340:intron 40.0%
AATGAAATGGAGAAGATGGG+AGG + chr3_2:22440819-22440838 Msa0399340:intron 40.0%
TTGGAGCAGAATTGGGTATA+GGG - chr3_2:22440874-22440893 None:intergenic 40.0%
ATTGGAGCAGAATTGGGTAT+AGG - chr3_2:22440875-22440894 None:intergenic 40.0%
CTAGATCTTGCGAATAACCA+GGG - chr3_2:22440947-22440966 None:intergenic 40.0%
AGTGAGTTTGTGAGGAAAAG+GGG + chr3_2:22441224-22441243 Msa0399340:intron 40.0%
ACACAATGGTTAGGAATGCA+GGG - chr3_2:22441360-22441379 None:intergenic 40.0%
AACACAATGGTTAGGAATGC+AGG - chr3_2:22441361-22441380 None:intergenic 40.0%
TGCATTCCTAACCATTGTGT+TGG + chr3_2:22441360-22441379 Msa0399340:intron 40.0%
TTCCTAACCATTGTGTTGGA+TGG + chr3_2:22441364-22441383 Msa0399340:intron 40.0%
TATCACACCATCCAACACAA+TGG - chr3_2:22441374-22441393 None:intergenic 40.0%
GTTGGATGGTGTGATATCAA+TGG + chr3_2:22441378-22441397 Msa0399340:intron 40.0%
! CACGCAATGCTGGTTATAAA+GGG + chr3_2:22441449-22441468 Msa0399340:intron 40.0%
!! GGCTGGTTTATTTGAGTCAT+TGG + chr3_2:22441862-22441881 Msa0399340:intron 40.0%
ATTTAAGGGAAGAGTGGTGA+AGG - chr3_2:22441966-22441985 None:intergenic 40.0%
CATTGACCAACATGCTCATT+TGG + chr3_2:22442003-22442022 Msa0399340:intron 40.0%
TGAAGTCCAAATGAGCATGT+TGG - chr3_2:22442012-22442031 None:intergenic 40.0%
AACATGCTCATTTGGACTTC+AGG + chr3_2:22442011-22442030 Msa0399340:intron 40.0%
! GTTTAGAGCTAGCTAGTTGA+AGG + chr3_2:22442180-22442199 Msa0399340:intron 40.0%
TGCTATAGCAGATCGATCTA+TGG - chr3_2:22442266-22442285 None:intergenic 40.0%
TGATGTGTAGTGATTGGTAC+TGG + chr3_2:22442479-22442498 Msa0399340:intron 40.0%
ATCCAAACTGTGTGTGAACA+TGG - chr3_2:22442510-22442529 None:intergenic 40.0%
CAGTTGTCTGTGTTTCCTTA+TGG + chr3_2:22442544-22442563 Msa0399340:intron 40.0%
!!! TTTTTTCAGGCCATTTTGGG+CGG + chr3_2:22442607-22442626 Msa0399340:intron 40.0%
! TACTGGGGATGTTGTTGTTA+AGG + chr3_2:22442651-22442670 Msa0399340:CDS 40.0%
!! AAGGTGGTTCTGAAACAGAA+AGG + chr3_2:22442786-22442805 Msa0399340:CDS 40.0%
!!! CAGGTTTTCGTTGGTTCAAA+GGG - chr3_2:22443064-22443083 None:intergenic 40.0%
!!! ACAGGTTTTCGTTGGTTCAA+AGG - chr3_2:22443065-22443084 None:intergenic 40.0%
TTGAACCAACGAAAACCTGT+TGG + chr3_2:22443065-22443084 Msa0399340:intron 40.0%
! ACATTCCAACAGGTTTTCGT+TGG - chr3_2:22443073-22443092 None:intergenic 40.0%
TTAGTTCCTTTCGGTCAGAA+GGG - chr3_2:22443099-22443118 None:intergenic 40.0%
ATTAGTTCCTTTCGGTCAGA+AGG - chr3_2:22443100-22443119 None:intergenic 40.0%
! ACCGAAGTAAAGCATTCTGT+TGG + chr3_2:22443173-22443192 Msa0399340:intron 40.0%
!!! ACCAACGGCATTTTTTCCAT+CGG - chr3_2:22443233-22443252 None:intergenic 40.0%
! CAGAAGACCTTTTGAACCAA+CGG - chr3_2:22443248-22443267 None:intergenic 40.0%
CCGAATGCACAACATTAACT+AGG - chr3_2:22443275-22443294 None:intergenic 40.0%
GTTAATGTTGTGCATTCGGA+TGG + chr3_2:22443276-22443295 Msa0399340:intron 40.0%
TTTCATACAGCCTTGAACGT+CGG + chr3_2:22443325-22443344 Msa0399340:intron 40.0%
GGAACATGTGAAAGTTTCGA+TGG + chr3_2:22443346-22443365 Msa0399340:intron 40.0%
! CGAAGCAGCTTTTCCTTTAT+CGG - chr3_2:22443550-22443569 None:intergenic 40.0%
CGATAAAGGAAAAGCTGCTT+CGG + chr3_2:22443548-22443567 Msa0399340:CDS 40.0%
ACATTTGCAGAGTATGCAGT+CGG + chr3_2:22443584-22443603 Msa0399340:three_prime_UTR 40.0%
CAATCAATTTGTGGCCAATC+GGG + chr3_2:22443617-22443636 Msa0399340:three_prime_UTR 40.0%
AAAACTTCAATAGCAGGCAG+CGG - chr3_2:22443650-22443669 None:intergenic 40.0%
AAGAAGAAGCTTGACGCCAT+TGG - chr3_2:22434163-22434182 None:intergenic 45.0%
TTTGTTGCGGAGGAGATTAG+GGG - chr3_2:22434196-22434215 None:intergenic 45.0%
! AGAGTACGTATTTGTTGCGG+AGG - chr3_2:22434206-22434225 None:intergenic 45.0%
!! TGGTGGTGTTGGTGAATTTC+AGG + chr3_2:22434302-22434321 Msa0399340:intron 45.0%
! GAGTGTTGCAAAGGGGTTAT+AGG + chr3_2:22434334-22434353 Msa0399340:CDS 45.0%
! GGATGAGTGGGTGTTTGTTA+TGG + chr3_2:22434490-22434509 Msa0399340:intron 45.0%
! TCAGTGACGTGTGGGTTATT+TGG + chr3_2:22435061-22435080 Msa0399340:intron 45.0%
TTGGACACCGAACATGCATT+CGG + chr3_2:22435103-22435122 Msa0399340:intron 45.0%
! TGGTGCTGAAAATGCGTCAA+GGG - chr3_2:22435538-22435557 None:intergenic 45.0%
! ATGGTGCTGAAAATGCGTCA+AGG - chr3_2:22435539-22435558 None:intergenic 45.0%
! TGACGCATTTTCAGCACCAT+TGG + chr3_2:22435539-22435558 Msa0399340:intron 45.0%
!! GCTGACATTTTAATGGGGAC+TGG + chr3_2:22436701-22436720 Msa0399340:intron 45.0%
!! AATGGGGACTGGTTATTGGT+TGG + chr3_2:22436712-22436731 Msa0399340:intron 45.0%
!! ATGGGGACTGGTTATTGGTT+GGG + chr3_2:22436713-22436732 Msa0399340:intron 45.0%
CCAAGAATTTCGAGAGTCTC+GGG - chr3_2:22436774-22436793 None:intergenic 45.0%
CCCAAGAATTTCGAGAGTCT+CGG - chr3_2:22436775-22436794 None:intergenic 45.0%
CCGAGACTCTCGAAATTCTT+GGG + chr3_2:22436772-22436791 Msa0399340:intron 45.0%
! GATATGTAGGTTGGCCATGA+AGG + chr3_2:22437136-22437155 Msa0399340:intron 45.0%
!! CGAGAAAATGGTTCTGGAGA+TGG + chr3_2:22437169-22437188 Msa0399340:CDS 45.0%
!! GAAAATGGTTCTGGAGATGG+TGG + chr3_2:22437172-22437191 Msa0399340:CDS 45.0%
AGAGACCGGCAAGTTATTAC+AGG - chr3_2:22437235-22437254 None:intergenic 45.0%
! TGTCTTTTGCCTGATGCAGT+TGG - chr3_2:22437418-22437437 None:intergenic 45.0%
CGCCAATGTTCCGATTAAAG+AGG - chr3_2:22437721-22437740 None:intergenic 45.0%
! TCTTTTATGGAAGCTGTCCG+TGG + chr3_2:22437855-22437874 Msa0399340:CDS 45.0%
ACGAACGGAACTGAATATGG+TGG - chr3_2:22437979-22437998 None:intergenic 45.0%
AGGCGCATAGTTCTTACGAA+CGG - chr3_2:22437994-22438013 None:intergenic 45.0%
CTCTTTGGCTGAACAATTGC+AGG + chr3_2:22438031-22438050 Msa0399340:intron 45.0%
TTTGGCTGAACAATTGCAGG+TGG + chr3_2:22438034-22438053 Msa0399340:intron 45.0%
TTGGCTGAACAATTGCAGGT+GGG + chr3_2:22438035-22438054 Msa0399340:intron 45.0%
TGACCCTTTACAACGCTTAC+AGG - chr3_2:22438092-22438111 None:intergenic 45.0%
! TGTAAGCGTTGTAAAGGGTC+AGG + chr3_2:22438091-22438110 Msa0399340:CDS 45.0%
TGGTCAGTATTGTCTTTGCC+TGG + chr3_2:22438116-22438135 Msa0399340:intron 45.0%
CTGTACAAGCTGGCGTATTT+AGG + chr3_2:22438235-22438254 Msa0399340:intron 45.0%
ACAAGCTGGCGTATTTAGGA+TGG + chr3_2:22438239-22438258 Msa0399340:intron 45.0%
GACTACATGTGGTGCATGTA+AGG + chr3_2:22438263-22438282 Msa0399340:intron 45.0%
GGGATCTGGCAAAATTGTCA+AGG + chr3_2:22438284-22438303 Msa0399340:intron 45.0%
GCCAAATGACAGTGATAGAG+GGG + chr3_2:22438545-22438564 Msa0399340:intron 45.0%
CCAAATGACAGTGATAGAGG+GGG + chr3_2:22438546-22438565 Msa0399340:intron 45.0%
CATGTTGATATGGCTATGCC+TGG + chr3_2:22438782-22438801 Msa0399340:intron 45.0%
GAGTTTCTGCAAGTCATGCA+AGG + chr3_2:22438876-22438895 Msa0399340:intron 45.0%
TTCCTTTGCATTGTGCTCAC+TGG + chr3_2:22439037-22439056 Msa0399340:intron 45.0%
!!! GAGTTTTGGAGAAAGCTCGT+TGG + chr3_2:22439502-22439521 Msa0399340:intron 45.0%
TGTCTTCCGTAGAGAAGGAT+CGG + chr3_2:22439808-22439827 Msa0399340:CDS 45.0%
! ATTAGTCTCCGCACAGGATA+AGG - chr3_2:22439900-22439919 None:intergenic 45.0%
! TAAGCATCGTTTCGCGTTCA+AGG - chr3_2:22439969-22439988 None:intergenic 45.0%
! TAACCATGATGGTGTAACCG+TGG + chr3_2:22439987-22440006 Msa0399340:intron 45.0%
! AACCATGATGGTGTAACCGT+GGG + chr3_2:22439988-22440007 Msa0399340:intron 45.0%
!! CGCTTCAAAGCATGTCGTTT+TGG + chr3_2:22440523-22440542 Msa0399340:intron 45.0%
ACAAAATCTTCCTGCGAACC+AGG + chr3_2:22440549-22440568 Msa0399340:intron 45.0%
CACAGGTCATATGGATCACA+AGG + chr3_2:22440576-22440595 Msa0399340:intron 45.0%
GCAAAAAAAGTTGGAGAGGC+CGG - chr3_2:22440650-22440669 None:intergenic 45.0%
CGGTGCAAAAAAAGTTGGAG+AGG - chr3_2:22440654-22440673 None:intergenic 45.0%
ACCATGCTGTCGGATATGTT+TGG + chr3_2:22440744-22440763 Msa0399340:intron 45.0%
TCCAAACATATCCGACAGCA+TGG - chr3_2:22440748-22440767 None:intergenic 45.0%
GATGGTATGGGGCAATGAAA+TGG + chr3_2:22440806-22440825 Msa0399340:intron 45.0%
GGGCAATGAAATGGAGAAGA+TGG + chr3_2:22440815-22440834 Msa0399340:intron 45.0%
TCCTGCATTGGAGCAGAATT+GGG - chr3_2:22440881-22440900 None:intergenic 45.0%
CCTAGATCTTGCGAATAACC+AGG - chr3_2:22440948-22440967 None:intergenic 45.0%
CCTGGTTATTCGCAAGATCT+AGG + chr3_2:22440945-22440964 Msa0399340:intron 45.0%
ACAATGGTTAGGAATGCAGG+GGG - chr3_2:22441358-22441377 None:intergenic 45.0%
CACAATGGTTAGGAATGCAG+GGG - chr3_2:22441359-22441378 None:intergenic 45.0%
CACCATCCAACACAATGGTT+AGG - chr3_2:22441369-22441388 None:intergenic 45.0%
GGATGGTGTGATATCAATGG+AGG + chr3_2:22441381-22441400 Msa0399340:intron 45.0%
GAGGAAACTGACACATGACA+TGG + chr3_2:22441400-22441419 Msa0399340:intron 45.0%
GAAACTGACACATGACATGG+TGG + chr3_2:22441403-22441422 Msa0399340:intron 45.0%
CCTTTATAACCAGCATTGCG+TGG - chr3_2:22441451-22441470 None:intergenic 45.0%
! CCACGCAATGCTGGTTATAA+AGG + chr3_2:22441448-22441467 Msa0399340:intron 45.0%
! TGTCCCATTGTGGAAAGTGT+CGG + chr3_2:22441515-22441534 Msa0399340:intron 45.0%
!! CGAGCACTGATGGTTACTTA+CGG + chr3_2:22441583-22441602 Msa0399340:intron 45.0%
TTGGCACCTCAAATCGACAT+GGG - chr3_2:22441913-22441932 None:intergenic 45.0%
TTTGGCACCTCAAATCGACA+TGG - chr3_2:22441914-22441933 None:intergenic 45.0%
CTCCATGTTCACACACAGTT+TGG + chr3_2:22442505-22442524 Msa0399340:intron 45.0%
AGTAAGAGTTGGGACCTGAA+TGG - chr3_2:22442635-22442654 None:intergenic 45.0%
ATTCAGGTCCCAACTCTTAC+TGG + chr3_2:22442634-22442653 Msa0399340:CDS 45.0%
TTCAGGTCCCAACTCTTACT+GGG + chr3_2:22442635-22442654 Msa0399340:CDS 45.0%
CAACATCCCCAGTAAGAGTT+GGG - chr3_2:22442645-22442664 None:intergenic 45.0%
ACAACATCCCCAGTAAGAGT+TGG - chr3_2:22442646-22442665 None:intergenic 45.0%
!! AATGGGGTGTCTTATTTCGC+AGG + chr3_2:22442737-22442756 Msa0399340:intron 45.0%
! TGGTCTTGATCCCTGTTAAG+AGG - chr3_2:22442910-22442929 None:intergenic 45.0%
AGAAGGGATGACATTCCAAC+AGG - chr3_2:22443083-22443102 None:intergenic 45.0%
GCGAAGGAAATTACTTCCGA+TGG + chr3_2:22443145-22443164 Msa0399340:intron 45.0%
TCCGATGGAAAAAATGCCGT+TGG + chr3_2:22443229-22443248 Msa0399340:intron 45.0%
TTCACATGTTCCGACGTTCA+AGG - chr3_2:22443338-22443357 None:intergenic 45.0%
TGAAAGTTTCGATGGGGTCT+GGG + chr3_2:22443354-22443373 Msa0399340:intron 45.0%
GGCTGTCAATACAAATGTGC+AGG + chr3_2:22443375-22443394 Msa0399340:intron 45.0%
CTGTCTATCTGTCAGGTTTC+TGG - chr3_2:22443481-22443500 None:intergenic 45.0%
GAAACCTGACAGATAGACAG+CGG + chr3_2:22443481-22443500 Msa0399340:intron 45.0%
AAACCTGACAGATAGACAGC+GGG + chr3_2:22443482-22443501 Msa0399340:CDS 45.0%
ATACTGCAACAGGTGCATGA+AGG - chr3_2:22443797-22443816 None:intergenic 45.0%
ACAGACTAGGATACTGCAAC+AGG - chr3_2:22443807-22443826 None:intergenic 45.0%
!!! TTTTTTTATATTGATTTTTT+TGG + chr3_2:22434282-22434301 Msa0399340:intron 5.0%
!! ATTAATTAAATAATTACAAT+GGG - chr3_2:22436800-22436819 None:intergenic 5.0%
!! AATTAATTAAATAATTACAA+TGG - chr3_2:22436801-22436820 None:intergenic 5.0%
!!! ATAATTTTTTTTTAGAATTT+TGG + chr3_2:22438953-22438972 Msa0399340:intron 5.0%
!!! TAATTTTTTTTTAGAATTTT+GGG + chr3_2:22438954-22438973 Msa0399340:intron 5.0%
CCATTGGAGCGAACCATTTG+GGG - chr3_2:22434147-22434166 None:intergenic 50.0%
GCCATTGGAGCGAACCATTT+GGG - chr3_2:22434148-22434167 None:intergenic 50.0%
TCACATGTGTCAGTGACGTG+TGG + chr3_2:22435052-22435071 Msa0399340:intron 50.0%
CACATGTGTCAGTGACGTGT+GGG + chr3_2:22435053-22435072 Msa0399340:intron 50.0%
GGGGCAACTAGATCCATTCA+TGG + chr3_2:22435311-22435330 Msa0399340:CDS 50.0%
! GGTGCTGAAAATGCGTCAAG+GGG - chr3_2:22435537-22435556 None:intergenic 50.0%
CCCGAGACTCTCGAAATTCT+TGG + chr3_2:22436771-22436790 Msa0399340:intron 50.0%
!! GGGAATGGATTGGGGATGAA+TGG + chr3_2:22437034-22437053 Msa0399340:intron 50.0%
GGCCAACCTACATATCCATG+TGG - chr3_2:22437132-22437151 None:intergenic 50.0%
! TAATCGGAACATTGGCGGAC+AGG + chr3_2:22437724-22437743 Msa0399340:CDS 50.0%
TGAACAATTGCAGGTGGGAG+TGG + chr3_2:22438040-22438059 Msa0399340:intron 50.0%
GAACAATTGCAGGTGGGAGT+GGG + chr3_2:22438041-22438060 Msa0399340:intron 50.0%
AACAATTGCAGGTGGGAGTG+GGG + chr3_2:22438042-22438061 Msa0399340:intron 50.0%
! GTTTCAGGTCTTGTACCAGG+AGG - chr3_2:22438070-22438089 None:intergenic 50.0%
! CAGGTTTCAGGTCTTGTACC+AGG - chr3_2:22438073-22438092 None:intergenic 50.0%
CAGCTTGTACAGATGTCTGC+CGG - chr3_2:22438227-22438246 None:intergenic 50.0%
TGTGGTGCATGTAAGGGATC+TGG + chr3_2:22438270-22438289 Msa0399340:intron 50.0%
CCCCCTCTATCACTGTCATT+TGG - chr3_2:22438549-22438568 None:intergenic 50.0%
! CAAGTCATGCAAGGGTGCAA+AGG + chr3_2:22438885-22438904 Msa0399340:CDS 50.0%
GACCAGTGAGCACAATGCAA+AGG - chr3_2:22439042-22439061 None:intergenic 50.0%
!! GTGGATTGGCTCACATCAGT+GGG - chr3_2:22439121-22439140 None:intergenic 50.0%
ATCACCAGGTCGATCTCCTT+CGG - chr3_2:22439655-22439674 None:intergenic 50.0%
GATCCTGTCTTCCGTAGAGA+AGG + chr3_2:22439803-22439822 Msa0399340:CDS 50.0%
GATCCTTCTCTACGGAAGAC+AGG - chr3_2:22439809-22439828 None:intergenic 50.0%
! CCATATGACCTGTGTTGACC+TGG - chr3_2:22440570-22440589 None:intergenic 50.0%
CCAGGTCAACACAGGTCATA+TGG + chr3_2:22440567-22440586 Msa0399340:intron 50.0%
AGATCGCAAGATCGTGGAAG+CGG - chr3_2:22440616-22440635 None:intergenic 50.0%
AGAGGTAGATCGCAAGATCG+TGG - chr3_2:22440622-22440641 None:intergenic 50.0%
CAGCGCGGTGCAAAAAAAGT+TGG - chr3_2:22440659-22440678 None:intergenic 50.0%
!!! CAACTTTTTTTGCACCGCGC+TGG + chr3_2:22440657-22440676 Msa0399340:intron 50.0%
GCGCTTAACAACCATGCTGT+CGG + chr3_2:22440734-22440753 Msa0399340:intron 50.0%
ACCCAATTCTGCTCCAATGC+AGG + chr3_2:22440877-22440896 Msa0399340:intron 50.0%
CTCCTGCATTGGAGCAGAAT+TGG - chr3_2:22440882-22440901 None:intergenic 50.0%
TCTTAGAGCTGCTCCTGCAT+TGG - chr3_2:22440893-22440912 None:intergenic 50.0%
!! GCAGGAGCAGCTCTAAGAAT+AGG + chr3_2:22440895-22440914 Msa0399340:intron 50.0%
! ACACATGACATGGTGGAGAG+TGG + chr3_2:22441410-22441429 Msa0399340:intron 50.0%
!! TGGTTATAAAGGGTGCTGCG+AGG + chr3_2:22441459-22441478 Msa0399340:intron 50.0%
!! TTATAAAGGGTGCTGCGAGG+TGG + chr3_2:22441462-22441481 Msa0399340:intron 50.0%
!! GTCCCATTGTGGAAAGTGTC+GGG + chr3_2:22441516-22441535 Msa0399340:intron 50.0%
!! TCCCATTGTGGAAAGTGTCG+GGG + chr3_2:22441517-22441536 Msa0399340:intron 50.0%
GGACCACTTTGTGGCAACAA+TGG + chr3_2:22441547-22441566 Msa0399340:intron 50.0%
CCACCATTGTTGCCACAAAG+TGG - chr3_2:22441553-22441572 None:intergenic 50.0%
CCACTTTGTGGCAACAATGG+TGG + chr3_2:22441550-22441569 Msa0399340:intron 50.0%
CTTTGTGGCAACAATGGTGG+TGG + chr3_2:22441553-22441572 Msa0399340:intron 50.0%
AAGTGCCAGCTGTATACAGC+TGG - chr3_2:22442209-22442228 None:intergenic 50.0%
CTGAATGGTTCCGCCCAAAA+TGG - chr3_2:22442620-22442639 None:intergenic 50.0%
! CATTTTGGGCGGAACCATTC+AGG + chr3_2:22442618-22442637 Msa0399340:CDS 50.0%
TCAGGTCCCAACTCTTACTG+GGG + chr3_2:22442636-22442655 Msa0399340:CDS 50.0%
TTCAAAGGGCTTTCGCGCTT+TGG - chr3_2:22443050-22443069 None:intergenic 50.0%
TGTCATCCCTTCTGACCGAA+AGG + chr3_2:22443090-22443109 Msa0399340:intron 50.0%
! TTTCTGGTGGAAGTGTGCGA+AGG + chr3_2:22443129-22443148 Msa0399340:intron 50.0%
GTGAAAGTTTCGATGGGGTC+TGG + chr3_2:22443353-22443372 Msa0399340:intron 50.0%
ATTCCCGCTGTCTATCTGTC+AGG - chr3_2:22443488-22443507 None:intergenic 50.0%
CCCCAAATGGTTCGCTCCAA+TGG + chr3_2:22434144-22434163 Msa0399340:exon 55.0%
CGCCATTGGAGCGAACCATT+TGG - chr3_2:22434149-22434168 None:intergenic 55.0%
!! GGTTCTGGAGATGGTGGCTT+TGG + chr3_2:22437178-22437197 Msa0399340:CDS 55.0%
!! GATGGTGGCTTTGGTCCCTT+TGG + chr3_2:22437187-22437206 Msa0399340:CDS 55.0%
! CATTGGCGGACAGGATGTCA+AGG + chr3_2:22437733-22437752 Msa0399340:CDS 55.0%
GCGTTGTAAAGGGTCAGGAG+TGG + chr3_2:22438096-22438115 Msa0399340:CDS 55.0%
CGGCAGACATCTGTACAAGC+TGG + chr3_2:22438225-22438244 Msa0399340:intron 55.0%
!! GGTGGATTGGCTCACATCAG+TGG - chr3_2:22439122-22439141 None:intergenic 55.0%
TCACCAGGTCGATCTCCTTC+GGG - chr3_2:22439654-22439673 None:intergenic 55.0%
!!! TTTTTTGCACCGCGCTGGCA+CGG + chr3_2:22440662-22440681 Msa0399340:intron 55.0%
AGGGGGTTACACTGGAAGGA+GGG - chr3_2:22441341-22441360 None:intergenic 55.0%
ATGCAGGGGGTTACACTGGA+AGG - chr3_2:22441345-22441364 None:intergenic 55.0%
AGGAATGCAGGGGGTTACAC+TGG - chr3_2:22441349-22441368 None:intergenic 55.0%
! ATGGTGGAGAGTGGAGACCA+TGG + chr3_2:22441419-22441438 Msa0399340:intron 55.0%
TGGAGAGTGGAGACCATGGT+TGG + chr3_2:22441423-22441442 Msa0399340:intron 55.0%
GTGGTGACAGTGTCCCATTG+TGG + chr3_2:22441505-22441524 Msa0399340:intron 55.0%
CCCCCGACACTTTCCACAAT+GGG - chr3_2:22441521-22441540 None:intergenic 55.0%
!! CCCATTGTGGAAAGTGTCGG+GGG + chr3_2:22441518-22441537 Msa0399340:intron 55.0%
ACCCCCGACACTTTCCACAA+TGG - chr3_2:22441522-22441541 None:intergenic 55.0%
!! ATTGTGGAAAGTGTCGGGGG+TGG + chr3_2:22441521-22441540 Msa0399340:intron 55.0%
!! TGTGGCAACAATGGTGGTGG+AGG + chr3_2:22441556-22441575 Msa0399340:intron 55.0%
!! GTGGCAACAATGGTGGTGGA+GGG + chr3_2:22441557-22441576 Msa0399340:intron 55.0%
!! TGGAGGGTATCGAGCACTGA+TGG + chr3_2:22441573-22441592 Msa0399340:intron 55.0%
GGATGCCAGCTGTATACAGC+TGG + chr3_2:22442201-22442220 Msa0399340:intron 55.0%
CTTATTTCGCAGGTGCGTCC+TGG + chr3_2:22442747-22442766 Msa0399340:intron 55.0%
TTCTGACCGTGCTGTGTTCC+AGG - chr3_2:22442768-22442787 None:intergenic 55.0%
TGGAACACAGCACGGTCAGA+AGG + chr3_2:22442767-22442786 Msa0399340:CDS 55.0%
AACACAGCACGGTCAGAAGG+TGG + chr3_2:22442770-22442789 Msa0399340:CDS 55.0%
GGAAAAGCTGCTTCGGCTTC+TGG + chr3_2:22443555-22443574 Msa0399340:CDS 55.0%
!! GGTGGCTTTGGTCCCTTTGG+AGG + chr3_2:22437190-22437209 Msa0399340:CDS 60.0%
! GGCTTTGGTCCCTTTGGAGG+CGG + chr3_2:22437193-22437212 Msa0399340:CDS 60.0%
! TTTGGTCCCTTTGGAGGCGG+TGG + chr3_2:22437196-22437215 Msa0399340:CDS 60.0%
CCAAAGCCACCGCCTCCAAA+GGG - chr3_2:22437205-22437224 None:intergenic 60.0%
TCCAAAGCCACCGCCTCCAA+AGG - chr3_2:22437206-22437225 None:intergenic 60.0%
! AGTGGTGGTGCAGATCCCGA+AGG + chr3_2:22439636-22439655 Msa0399340:CDS 60.0%
GATCCCGAAGGAGATCGACC+TGG + chr3_2:22439648-22439667 Msa0399340:CDS 60.0%
GGCCCACGGTTACACCATCA+TGG - chr3_2:22439993-22440012 None:intergenic 60.0%
! CCTGTGTTGACCTGGTTCGC+AGG - chr3_2:22440562-22440581 None:intergenic 60.0%
CCTGCGAACCAGGTCAACAC+AGG + chr3_2:22440559-22440578 Msa0399340:intron 60.0%
TGCGATCTACCTCTGCACGC+CGG + chr3_2:22440628-22440647 Msa0399340:intron 60.0%
GGGTTACACTGGAAGGAGGG+AGG - chr3_2:22441338-22441357 None:intergenic 60.0%
CAGGGGGTTACACTGGAAGG+AGG - chr3_2:22441342-22441361 None:intergenic 60.0%
GCATTGCGTGGCACCAACCA+TGG - chr3_2:22441439-22441458 None:intergenic 60.0%
!! TGGTTGGTGCCACGCAATGC+TGG + chr3_2:22441439-22441458 Msa0399340:intron 60.0%
!! TAAAGGGTGCTGCGAGGTGG+AGG + chr3_2:22441465-22441484 Msa0399340:intron 60.0%
!! AAAGGGTGCTGCGAGGTGGA+GGG + chr3_2:22441466-22441485 Msa0399340:intron 60.0%
AGGTGGAGGGTGACAAGCAG+TGG + chr3_2:22441479-22441498 Msa0399340:intron 60.0%
GGGTGACAAGCAGTGGTGAG+TGG + chr3_2:22441486-22441505 Msa0399340:intron 60.0%
!! TGGAAAGTGTCGGGGGTGGA+GGG + chr3_2:22441525-22441544 Msa0399340:intron 60.0%
GTGCGTCCTGGAACACAGCA+CGG + chr3_2:22442759-22442778 Msa0399340:CDS 60.0%
! CCCTTTGGAGGCGGTGGCTT+TGG + chr3_2:22437202-22437221 Msa0399340:CDS 65.0%
CTCCTTCAACCGTGCCAGCG+CGG - chr3_2:22440674-22440693 None:intergenic 65.0%
!! GTGGAAAGTGTCGGGGGTGG+AGG + chr3_2:22441524-22441543 Msa0399340:intron 65.0%
!! GGAAAGTGTCGGGGGTGGAG+GGG + chr3_2:22441526-22441545 Msa0399340:intron 65.0%
GGGTGGAGGGGACCACTTTG+TGG + chr3_2:22441538-22441557 Msa0399340:intron 65.0%
GCAGCGGCTTCTTGCCCGAT+TGG - chr3_2:22443634-22443653 None:intergenic 65.0%
GGTGGGAGTGGGGTTCCTCC+TGG + chr3_2:22438052-22438071 Msa0399340:intron 70.0%
TTGGAGAGGCCGGCGTGCAG+AGG - chr3_2:22440640-22440659 None:intergenic 70.0%
! CACCGCGCTGGCACGGTTGA+AGG + chr3_2:22440669-22440688 Msa0399340:intron 70.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 22433900 22443958 22433900 ID=Msa0399340;Name=Msa0399340
chr3_2 mRNA 22433900 22443958 22433900 ID=Msa0399340-mRNA-1;Parent=Msa0399340;Name=Msa0399340-mRNA-1;_AED=0.09;_eAED=0.09;_QI=228|0.94|1|1|0.88|0.88|18|377|419
chr3_2 exon 22433900 22434015 22433900 ID=Msa0399340-mRNA-1:exon:4752;Parent=Msa0399340-mRNA-1
chr3_2 exon 22434038 22434218 22434038 ID=Msa0399340-mRNA-1:exon:4753;Parent=Msa0399340-mRNA-1
chr3_2 exon 22434324 22434417 22434324 ID=Msa0399340-mRNA-1:exon:4754;Parent=Msa0399340-mRNA-1
chr3_2 exon 22435252 22435338 22435252 ID=Msa0399340-mRNA-1:exon:4755;Parent=Msa0399340-mRNA-1
chr3_2 exon 22435553 22435635 22435553 ID=Msa0399340-mRNA-1:exon:4756;Parent=Msa0399340-mRNA-1
chr3_2 exon 22436235 22436318 22436235 ID=Msa0399340-mRNA-1:exon:4757;Parent=Msa0399340-mRNA-1
chr3_2 exon 22436444 22436482 22436444 ID=Msa0399340-mRNA-1:exon:4758;Parent=Msa0399340-mRNA-1
chr3_2 exon 22437145 22437234 22437145 ID=Msa0399340-mRNA-1:exon:4759;Parent=Msa0399340-mRNA-1
chr3_2 exon 22437704 22437754 22437704 ID=Msa0399340-mRNA-1:exon:4760;Parent=Msa0399340-mRNA-1
chr3_2 exon 22437840 22437927 22437840 ID=Msa0399340-mRNA-1:exon:4761;Parent=Msa0399340-mRNA-1
chr3_2 exon 22438053 22438117 22438053 ID=Msa0399340-mRNA-1:exon:4762;Parent=Msa0399340-mRNA-1
chr3_2 exon 22438877 22438949 22438877 ID=Msa0399340-mRNA-1:exon:4763;Parent=Msa0399340-mRNA-1
chr3_2 exon 22439601 22439692 22439601 ID=Msa0399340-mRNA-1:exon:4764;Parent=Msa0399340-mRNA-1
chr3_2 exon 22439794 22439865 22439794 ID=Msa0399340-mRNA-1:exon:4765;Parent=Msa0399340-mRNA-1
chr3_2 exon 22442616 22442672 22442616 ID=Msa0399340-mRNA-1:exon:4766;Parent=Msa0399340-mRNA-1
chr3_2 exon 22442759 22442807 22442759 ID=Msa0399340-mRNA-1:exon:4767;Parent=Msa0399340-mRNA-1
chr3_2 exon 22442918 22442984 22442918 ID=Msa0399340-mRNA-1:exon:4768;Parent=Msa0399340-mRNA-1
chr3_2 exon 22443482 22443958 22443482 ID=Msa0399340-mRNA-1:exon:4769;Parent=Msa0399340-mRNA-1
chr3_2 five_prime_UTR 22433900 22434015 22433900 ID=Msa0399340-mRNA-1:five_prime_utr;Parent=Msa0399340-mRNA-1
chr3_2 five_prime_UTR 22434038 22434149 22434038 ID=Msa0399340-mRNA-1:five_prime_utr;Parent=Msa0399340-mRNA-1
chr3_2 CDS 22434150 22434218 22434150 ID=Msa0399340-mRNA-1:cds;Parent=Msa0399340-mRNA-1
chr3_2 CDS 22434324 22434417 22434324 ID=Msa0399340-mRNA-1:cds;Parent=Msa0399340-mRNA-1
chr3_2 CDS 22435252 22435338 22435252 ID=Msa0399340-mRNA-1:cds;Parent=Msa0399340-mRNA-1
chr3_2 CDS 22435553 22435635 22435553 ID=Msa0399340-mRNA-1:cds;Parent=Msa0399340-mRNA-1
chr3_2 CDS 22436235 22436318 22436235 ID=Msa0399340-mRNA-1:cds;Parent=Msa0399340-mRNA-1
chr3_2 CDS 22436444 22436482 22436444 ID=Msa0399340-mRNA-1:cds;Parent=Msa0399340-mRNA-1
chr3_2 CDS 22437145 22437234 22437145 ID=Msa0399340-mRNA-1:cds;Parent=Msa0399340-mRNA-1
chr3_2 CDS 22437704 22437754 22437704 ID=Msa0399340-mRNA-1:cds;Parent=Msa0399340-mRNA-1
chr3_2 CDS 22437840 22437927 22437840 ID=Msa0399340-mRNA-1:cds;Parent=Msa0399340-mRNA-1
chr3_2 CDS 22438053 22438117 22438053 ID=Msa0399340-mRNA-1:cds;Parent=Msa0399340-mRNA-1
chr3_2 CDS 22438877 22438949 22438877 ID=Msa0399340-mRNA-1:cds;Parent=Msa0399340-mRNA-1
chr3_2 CDS 22439601 22439692 22439601 ID=Msa0399340-mRNA-1:cds;Parent=Msa0399340-mRNA-1
chr3_2 CDS 22439794 22439865 22439794 ID=Msa0399340-mRNA-1:cds;Parent=Msa0399340-mRNA-1
chr3_2 CDS 22442616 22442672 22442616 ID=Msa0399340-mRNA-1:cds;Parent=Msa0399340-mRNA-1
chr3_2 CDS 22442759 22442807 22442759 ID=Msa0399340-mRNA-1:cds;Parent=Msa0399340-mRNA-1
chr3_2 CDS 22442918 22442984 22442918 ID=Msa0399340-mRNA-1:cds;Parent=Msa0399340-mRNA-1
chr3_2 CDS 22443482 22443581 22443482 ID=Msa0399340-mRNA-1:cds;Parent=Msa0399340-mRNA-1
chr3_2 three_prime_UTR 22443582 22443958 22443582 ID=Msa0399340-mRNA-1:three_prime_utr;Parent=Msa0399340-mRNA-1
Gene Sequence

>Msa0399340

ATGGTTCGCTCCAATGGCGTCAAGCTTCTTCTTCGTTCTCTCTCCCCTAATCTCCTCCGCAACAAATACGTATATGAAGGAGTGTTGCAAAGGGGTTATAGGACATTGAATTCAGGATTATGCAATCGTTCTTCCAAAGTTACTGGAAATTATTTTCACAATGTTGGAGATGGTGTTAAATTGAAGAACTGGGTGCTATTGGGAGCAGCAAATACTTATTTGGGGGCAACTAGATCCATTCATGGATCAGCACCATTGGCAAAGGACTTTTATGATGTTCTTGGAATCAGTAAGAATGCAAGTTCTTCTGAAATAAAGAAAGCATACTATGGGCTTGCAAAAAAGTTACATCCTGACACAAACAAAGATGATCCTGAAGCGGAAAAGAAATTTCAAGAAGTTTCAAGGGCATATGAGGTTTTGAAGGACGAGGAAAAGCGTCAAGAGTATGATCAGGTTGGCCATGAAGGTTTTGTAAACCGAGAAAATGGTTCTGGAGATGGTGGCTTTGGTCCCTTTGGAGGCGGTGGCTTTGGATTTAATCCTGATATTTTCCATGACCTCTTTAATCGGAACATTGGCGGACAGGATGTCAAGACTTTTGTTGAACTTTCTTTTATGGAAGCTGTCCGTGGATGCATCAAAACCATTACATTTCAAACAGATATGATTTGTAACACTTGTGGTGGGAGTGGGGTTCCTCCTGGTACAAGACCTGAAACCTGTAAGCGTTGTAAAGGGTCAGGAGTGAGTTTCTGCAAGTCATGCAAGGGTGCAAAGGTTACCAGAGCAACCAAGTCAGTTAAATTGGATATTATGGCTGGGATTGACAACAATGAAACCATTAAGGTTTACAAAAGTGGTGGTGCAGATCCCGAAGGAGATCGACCTGGTGATCTTTATGTTACTGTCAAGGTCAGAGAAGATCCTGTCTTCCGTAGAGAAGGATCGGATATTCATGTAGATACTGTTTTAAGCATCACTCAGGCCATTTTGGGCGGAACCATTCAGGTCCCAACTCTTACTGGGGATGTTGTTGTTAAGGTGCGTCCTGGAACACAGCACGGTCAGAAGGTGGTTCTGAAACAGAAAGGGATCAAGACCAAAAGATATAACTCATTAGGCAATCAATACGTTCATTTTAACGTCAGCATCCCAGTAAACCTGACAGATAGACAGCGGGAATTGATTGAAGAGTTTCAGAAAGAAGAGCAATATGAATCTTCCGATAAAGGAAAAGCTGCTTCGGCTTCTGGTTGA
Protein sequence

>Msa0399340

MVRSNGVKLLLRSLSPNLLRNKYVYEGVLQRGYRTLNSGLCNRSSKVTGNYFHNVGDGVKLKNWVLLGAANTYLGATRSIHGSAPLAKDFYDVLGISKNASSSEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSRAYEVLKDEEKRQEYDQVGHEGFVNRENGSGDGGFGPFGGGGFGFNPDIFHDLFNRNIGGQDVKTFVELSFMEAVRGCIKTITFQTDMICNTCGGSGVPPGTRPETCKRCKGSGVSFCKSCKGAKVTRATKSVKLDIMAGIDNNETIKVYKSGGADPEGDRPGDLYVTVKVREDPVFRREGSDIHVDTVLSITQAILGGTIQVPTLTGDVVVKVRPGTQHGQKVVLKQKGIKTKRYNSLGNQYVHFNVSIPVNLTDRQRELIEEFQKEEQYESSDKGKAASASG*