Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0923260 | XP_003620150.1 | 88.643 | 361 | 3 | 1 | 1 | 361 | 1 | 323 | 0.0 | 629 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0923260 | sp|Q8LAD2|SUCA2_ARATH | 77.159 | 359 | 39 | 3 | 5 | 361 | 24 | 341 | 0.0 | 540 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0054730 | Msa0923260 | 0.905568 | 3.739601e-80 | -8.615850e-47 |
| Msa0074700 | Msa0923260 | -0.804521 | 2.075835e-49 | -8.615850e-47 |
| Msa0090770 | Msa0923260 | 0.820032 | 8.495669e-53 | -8.615850e-47 |
| Msa0106370 | Msa0923260 | 0.842171 | 3.042953e-58 | -8.615850e-47 |
| Msa0607750 | Msa0923260 | 0.822233 | 2.643593e-53 | -8.615850e-47 |
| Msa0612870 | Msa0923260 | 0.809695 | 1.666280e-50 | -8.615850e-47 |
| Msa0640380 | Msa0923260 | -0.810032 | 1.409905e-50 | -8.615850e-47 |
| Msa0647450 | Msa0923260 | 0.810473 | 1.132689e-50 | -8.615850e-47 |
| Msa0661190 | Msa0923260 | 0.853380 | 2.482420e-61 | -8.615850e-47 |
| Msa0678820 | Msa0923260 | -0.805255 | 1.457795e-49 | -8.615850e-47 |
| Msa0759470 | Msa0923260 | 0.865650 | 5.063235e-65 | -8.615850e-47 |
| Msa0827980 | Msa0923260 | -0.804479 | 2.117720e-49 | -8.615850e-47 |
| Msa0178860 | Msa0923260 | 0.807581 | 4.712502e-50 | -8.615850e-47 |
| Msa0185640 | Msa0923260 | 0.812602 | 3.904345e-51 | -8.615850e-47 |
| Msa0226250 | Msa0923260 | -0.802151 | 6.427349e-49 | -8.615850e-47 |
| Msa0231290 | Msa0923260 | 0.804292 | 2.317196e-49 | -8.615850e-47 |
| Msa0373930 | Msa0923260 | -0.811563 | 6.577935e-51 | -8.615850e-47 |
| Msa0409080 | Msa0923260 | -0.800568 | 1.356229e-48 | -8.615850e-47 |
| Msa0260270 | Msa0923260 | 0.815980 | 6.998705e-52 | -8.615850e-47 |
| Msa0298610 | Msa0923260 | -0.812935 | 3.299611e-51 | -8.615850e-47 |
| Msa0306210 | Msa0923260 | 0.803807 | 2.922850e-49 | -8.615850e-47 |
| Msa0342340 | Msa0923260 | 0.803473 | 3.428108e-49 | -8.615850e-47 |
| Msa0493630 | Msa0923260 | -0.819056 | 1.418731e-52 | -8.615850e-47 |
| Msa0494620 | Msa0923260 | 0.843625 | 1.249237e-58 | -8.615850e-47 |
| Msa0502100 | Msa0923260 | -0.821363 | 4.202449e-53 | -8.615850e-47 |
| Msa0521430 | Msa0923260 | -0.805952 | 1.041323e-49 | -8.615850e-47 |
| Msa0532790 | Msa0923260 | 0.849082 | 4.062929e-60 | -8.615850e-47 |
| Msa0543900 | Msa0923260 | -0.802895 | 4.515471e-49 | -8.615850e-47 |
| Msa0554740 | Msa0923260 | -0.800826 | 1.201323e-48 | -8.615850e-47 |
| Msa0576990 | Msa0923260 | 0.800741 | 1.249924e-48 | -8.615850e-47 |
| Msa0585000 | Msa0923260 | 0.809036 | 2.307355e-50 | -8.615850e-47 |
| Msa0599770 | Msa0923260 | -0.804749 | 1.860674e-49 | -8.615850e-47 |
| Msa0866950 | Msa0923260 | -0.804948 | 1.690618e-49 | -8.615850e-47 |
| Msa0923260 | Msa0962190 | 0.912126 | 2.781044e-83 | -8.615850e-47 |
| Msa0923260 | Msa0996830 | 0.878427 | 2.833070e-69 | -8.615850e-47 |
| Msa0923260 | Msa0997450 | 0.805149 | 1.534241e-49 | -8.615850e-47 |
| Msa0923260 | Msa1019840 | 0.829988 | 3.781276e-55 | -8.615850e-47 |
| Msa0923260 | Msa1030880 | 0.840835 | 6.844598e-58 | -8.615850e-47 |
| Msa0923260 | Msa1041730 | -0.806183 | 9.307275e-50 | -8.615850e-47 |
| Msa0923260 | Msa1073970 | -0.804036 | 2.619209e-49 | -8.615850e-47 |
| Msa0923260 | Msa1075220 | 0.806945 | 6.427212e-50 | -8.615850e-47 |
| Msa0923260 | Msa1078580 | 0.827443 | 1.560077e-54 | -8.615850e-47 |
| Msa0923260 | Msa1078750 | 0.824063 | 9.888987e-54 | -8.615850e-47 |
| Msa0923260 | Msa1116130 | 0.811816 | 5.794627e-51 | -8.615850e-47 |
| Msa0923260 | Msa1121450 | 0.804880 | 1.746871e-49 | -8.615850e-47 |
| Msa0923260 | Msa1125080 | -0.812223 | 4.724597e-51 | -8.615850e-47 |
| Msa0923260 | Msa1139000 | 0.810175 | 1.313746e-50 | -8.615850e-47 |
| Msa0923260 | Msa1157930 | 0.802426 | 5.640864e-49 | -8.615850e-47 |
| Msa0923260 | Msa1162550 | 0.808403 | 3.151409e-50 | -8.615850e-47 |
| Msa0923260 | Msa1167220 | -0.815395 | 9.449948e-52 | -8.615850e-47 |
| Msa0923260 | Msa1190710 | 0.825529 | 4.461298e-54 | -8.615850e-47 |
| Msa0923260 | Msa1204980 | 0.800112 | 1.679417e-48 | -8.615850e-47 |
| Msa0923260 | Msa1205130 | -0.807737 | 4.366985e-50 | -8.615850e-47 |
| Msa0923260 | Msa1244720 | 0.830216 | 3.326713e-55 | -8.615850e-47 |
| Msa0923260 | Msa1256540 | 0.806551 | 7.785789e-50 | -8.615850e-47 |
| Msa0923260 | Msa1265340 | 0.806586 | 7.653507e-50 | -8.615850e-47 |
| Msa0923260 | Msa1296880 | -0.836359 | 9.800746e-57 | -8.615850e-47 |
| Msa0923260 | Msa1296960 | 0.814035 | 1.891172e-51 | -8.615850e-47 |
| Msa0923260 | Msa1390390 | 0.802958 | 4.381985e-49 | -8.615850e-47 |
| Msa0923260 | Msa1453780 | 0.843764 | 1.146162e-58 | -8.615850e-47 |
| Msa0923260 | Msa1454910 | 0.823843 | 1.113745e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0923260 | MtrunA17_Chr6g0481761 | 88.643 | 361 | 3 | 1 | 1 | 361 | 1 | 323 | 0.0 | 629 |
| Msa0923260 | MtrunA17_Chr2g0294381 | 27.778 | 252 | 132 | 4 | 116 | 356 | 104 | 316 | 3.86e-16 | 79.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0923260 | AT5G23250.1 | 77.159 | 359 | 39 | 3 | 5 | 361 | 24 | 341 | 0.0 | 540 |
| Msa0923260 | AT5G08300.1 | 77.681 | 345 | 37 | 2 | 19 | 361 | 40 | 346 | 0.0 | 535 |
| Msa0923260 | AT5G23250.2 | 77.316 | 313 | 28 | 3 | 5 | 315 | 24 | 295 | 2.72e-167 | 469 |
| Msa0923260 | AT5G23250.3 | 86.463 | 229 | 26 | 2 | 5 | 231 | 24 | 249 | 4.56e-141 | 400 |
| Msa0923260 | AT3G06650.1 | 26.984 | 252 | 134 | 4 | 116 | 356 | 104 | 316 | 1.40e-15 | 78.6 |
| Msa0923260 | AT3G06650.2 | 26.984 | 252 | 134 | 4 | 116 | 356 | 104 | 316 | 1.40e-15 | 78.6 |
| Msa0923260 | AT5G49460.2 | 27.381 | 252 | 133 | 4 | 116 | 356 | 104 | 316 | 4.08e-15 | 77.0 |
| Msa0923260 | AT5G49460.1 | 27.381 | 252 | 133 | 4 | 116 | 356 | 104 | 316 | 4.08e-15 | 77.0 |
Find 117 sgRNAs with CRISPR-Local
Find 316 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAACCCTGTGCCTCCTTTC+TGG | 0.145644 | 6_2:+63304812 | None:intergenic |
| ACCGAACAAGCGATCGAATA+TGG | 0.237150 | 6_2:-63304564 | Msa0923260:CDS |
| AATTCAGGTATTATTCTTAT+TGG | 0.247983 | 6_2:-63302006 | Msa0923260:intron |
| GTTTGCTGGTAGTGGGGTTA+TGG | 0.251968 | 6_2:-63301607 | Msa0923260:CDS |
| AAAGGTCCCAACTTTAGTTC+TGG | 0.269047 | 6_2:-63301630 | Msa0923260:CDS |
| AACTTTAGTTCTGGGTTTGC+TGG | 0.277028 | 6_2:-63301621 | Msa0923260:CDS |
| ATTGCAAGTGTGCCTGTTAA+AGG | 0.278946 | 6_2:-63301648 | Msa0923260:intron |
| ATTATTCTTATTGGAGAGAT+AGG | 0.288969 | 6_2:-63301997 | Msa0923260:CDS |
| AAAGGCGGAACGGAACATTT+AGG | 0.302614 | 6_2:-63304510 | Msa0923260:CDS |
| CCTGTTGTTGCATTTATTGC+TGG | 0.315893 | 6_2:-63301316 | Msa0923260:CDS |
| GATCGAATATGGAACGAATA+TGG | 0.316829 | 6_2:-63304553 | Msa0923260:CDS |
| TGGTCCTATCAAACGAGTTT+TGG | 0.319821 | 6_2:+63302931 | None:intergenic |
| AAGCCCGGGGAATGTAAAAT+TGG | 0.326008 | 6_2:-63302890 | Msa0923260:CDS |
| AAGGCGGAACGGAACATTTA+GGG | 0.329459 | 6_2:-63304509 | Msa0923260:CDS |
| CTTCCATGTAAGACAACTTC+AGG | 0.333347 | 6_2:+63301806 | None:intergenic |
| GTGGAGTCCCCAGCTAAAAT+TGG | 0.338774 | 6_2:-63300533 | Msa0923260:CDS |
| AACGGAACATTTAGGGCTTC+CGG | 0.344291 | 6_2:-63304502 | Msa0923260:CDS |
| CTAAAGTTGGGACCTTTAAC+AGG | 0.347134 | 6_2:+63301636 | None:intergenic |
| AGTTCTGGGTTTGCTGGTAG+TGG | 0.360938 | 6_2:-63301615 | Msa0923260:CDS |
| AAGGTCCCAACTTTAGTTCT+GGG | 0.362872 | 6_2:-63301629 | Msa0923260:CDS |
| TGAGAAGCTGCGGCGGTTGT+TGG | 0.376085 | 6_2:+63304671 | None:intergenic |
| TCCATATTCGATCGCTTGTT+CGG | 0.380007 | 6_2:+63304563 | None:intergenic |
| ATTGGAATTGTTTCTCGTTC+TGG | 0.384214 | 6_2:-63302833 | Msa0923260:CDS |
| AAAGATGTACCTTCTGTTTG+AGG | 0.393263 | 6_2:+63302184 | None:intergenic |
| CAAACAACTGCTGTTGGCCT+TGG | 0.397173 | 6_2:-63302289 | Msa0923260:CDS |
| TGTTCCGTTCCGCCTTTCTT+CGG | 0.405095 | 6_2:+63304516 | None:intergenic |
| GTTCTGGGTTTGCTGGTAGT+GGG | 0.406242 | 6_2:-63301614 | Msa0923260:CDS |
| AACAAAGTTTGTTCCATTGA+AGG | 0.409176 | 6_2:+63302234 | None:intergenic |
| AGGGATTCCTCAACATGATA+TGG | 0.409706 | 6_2:-63304343 | Msa0923260:intron |
| GGACGCTGCTGCTCTAATTA+AGG | 0.414347 | 6_2:-63301959 | Msa0923260:intron |
| CAATCCAAAACTCGTTTGAT+AGG | 0.420569 | 6_2:-63302935 | Msa0923260:CDS |
| AAGACAAAATCAGCACCCTT+AGG | 0.428915 | 6_2:-63300574 | Msa0923260:CDS |
| CAAGGCCAACAGCAGTTGTT+TGG | 0.431303 | 6_2:+63302290 | None:intergenic |
| ATCAGCACCCTTAGGGAAGC+TGG | 0.437867 | 6_2:-63300566 | Msa0923260:CDS |
| TTGATGATACCAGGGCAGTT+TGG | 0.446440 | 6_2:+63302911 | None:intergenic |
| TCCACATGTGTGGGCATTGG+AGG | 0.447053 | 6_2:-63302262 | Msa0923260:CDS |
| CCGGGTTACATTCACAAACC+TGG | 0.447993 | 6_2:-63302860 | Msa0923260:CDS |
| AGCTATTGTGTCGGGTGGCA+AGG | 0.452187 | 6_2:-63300606 | Msa0923260:CDS |
| ACAAAGTTTGTTCCATTGAA+GGG | 0.461996 | 6_2:+63302235 | None:intergenic |
| AGGCTTAGTGCAATAGTTTG+AGG | 0.468890 | 6_2:-63300480 | Msa0923260:exon |
| TCAGTCCAGAAAGGAGGCAC+AGG | 0.472249 | 6_2:-63304817 | Msa0923260:five_prime_UTR |
| GTGATCTGTCAAGGAATAAC+CGG | 0.473606 | 6_2:-63304606 | Msa0923260:CDS |
| TGCCCTGGTATCATCAAGCC+CGG | 0.475481 | 6_2:-63302905 | Msa0923260:CDS |
| ATTCACAAACCTGGGCGCAT+TGG | 0.479565 | 6_2:-63302851 | Msa0923260:CDS |
| CCAGCAATAAATGCAACAAC+AGG | 0.479962 | 6_2:+63301316 | None:intergenic |
| TTCTTGTGCAGCTATTGTGT+CGG | 0.483534 | 6_2:-63300615 | Msa0923260:intron |
| CTTGTTGTTTGTATTACTGA+AGG | 0.486594 | 6_2:-63304363 | Msa0923260:CDS |
| GAAGCTGCGGCGGTTGTTGG+AGG | 0.488903 | 6_2:+63304674 | None:intergenic |
| GGAAGCGGTTGAAGCGGAGT+TGG | 0.489889 | 6_2:-63304388 | Msa0923260:CDS |
| CTGTGACTCCAGCTTCCCTA+AGG | 0.494628 | 6_2:+63300558 | None:intergenic |
| TGCTGCTGCTATTATGGAAG+CGG | 0.495050 | 6_2:-63304403 | Msa0923260:CDS |
| TCTTGTGCAGCTATTGTGTC+GGG | 0.495233 | 6_2:-63300614 | Msa0923260:intron |
| AGCAAACCCAGAACTAAAGT+TGG | 0.496109 | 6_2:+63301623 | None:intergenic |
| TCCCCGGGCTTGATGATACC+AGG | 0.502694 | 6_2:+63302902 | None:intergenic |
| AAAAGTTTGTCTTGTGGGGA+AGG | 0.508177 | 6_2:-63301835 | Msa0923260:intron |
| ATCCCTGAAGTTGTCTTACA+TGG | 0.509990 | 6_2:-63301809 | Msa0923260:CDS |
| CAATCCACATGTGTGGGCAT+TGG | 0.513242 | 6_2:-63302265 | Msa0923260:CDS |
| TGTAAAATTGGAATCATGCC+GGG | 0.516403 | 6_2:-63302878 | Msa0923260:CDS |
| TCCGCAACAGAATTGAAAAC+CGG | 0.517721 | 6_2:+63304483 | None:intergenic |
| GATCTGCTAGGAACTTTGTA+AGG | 0.517985 | 6_2:+63302206 | None:intergenic |
| AGACAAAATCAGCACCCTTA+GGG | 0.519396 | 6_2:-63300573 | Msa0923260:CDS |
| AAAGTTTGTCTTGTGGGGAA+GGG | 0.520481 | 6_2:-63301834 | Msa0923260:intron |
| GGCGGTGTTACTCCGAAGAA+AGG | 0.520851 | 6_2:-63304528 | Msa0923260:CDS |
| AAGGGGTGGTTGAGAAGCTG+CGG | 0.523976 | 6_2:+63304661 | None:intergenic |
| TCCTCCAATGCCCACACATG+TGG | 0.524542 | 6_2:+63302261 | None:intergenic |
| ATAATAGCAGCAGCAGCAAA+AGG | 0.524930 | 6_2:+63304411 | None:intergenic |
| TTCTGGGTTTGCTGGTAGTG+GGG | 0.529426 | 6_2:-63301613 | Msa0923260:CDS |
| GCTATTGTGTCGGGTGGCAA+GGG | 0.534414 | 6_2:-63300605 | Msa0923260:CDS |
| GCAGCAGCAGCAAAAGGAGG+AGG | 0.535843 | 6_2:+63304417 | None:intergenic |
| TGGGGTTATGGACATGCAAA+AGG | 0.536838 | 6_2:-63301595 | Msa0923260:intron |
| GCAAACCCAGAACTAAAGTT+GGG | 0.538409 | 6_2:+63301624 | None:intergenic |
| ATGTAAAATTGGAATCATGC+CGG | 0.544331 | 6_2:-63302879 | Msa0923260:CDS |
| TTCCATGTAAGACAACTTCA+GGG | 0.544755 | 6_2:+63301807 | None:intergenic |
| CTGCTTGAAAATATCAAACA+TGG | 0.547001 | 6_2:+63300505 | None:intergenic |
| ATTGGAGGAGACCCCTTCAA+TGG | 0.551942 | 6_2:-63302247 | Msa0923260:CDS |
| TTGTTGTTTGTATTACTGAA+GGG | 0.552535 | 6_2:-63304362 | Msa0923260:CDS |
| CAAAGTTTGTTCCATTGAAG+GGG | 0.558465 | 6_2:+63302236 | None:intergenic |
| GAATGACTATTCAGGAAAGC+GGG | 0.558880 | 6_2:-63301348 | Msa0923260:intron |
| GAAACAATTCCAATGCGCCC+AGG | 0.559949 | 6_2:+63302842 | None:intergenic |
| CGTGTCCCATACGACGGCCA+GGG | 0.564279 | 6_2:+63301281 | None:intergenic |
| ATTCTTATTGGAGAGATAGG+AGG | 0.566079 | 6_2:-63301994 | Msa0923260:CDS |
| GAATATGGAACGAATATGGT+TGG | 0.570512 | 6_2:-63304549 | Msa0923260:CDS |
| GATAGGAGGAACTGCAGAAG+AGG | 0.574249 | 6_2:-63301980 | Msa0923260:CDS |
| GTTTACCAAACAACTGCTGT+TGG | 0.576485 | 6_2:-63302295 | Msa0923260:CDS |
| AGCACACGCGTGATCTGTCA+AGG | 0.576838 | 6_2:-63304615 | Msa0923260:CDS |
| TTGATAGGACCAAACTGCCC+TGG | 0.579975 | 6_2:-63302920 | Msa0923260:CDS |
| TAAGAATAGTCAGTCCAGAA+AGG | 0.581853 | 6_2:-63304826 | Msa0923260:five_prime_UTR |
| GGGTGGTTGAGAAGCTGCGG+CGG | 0.584393 | 6_2:+63304664 | None:intergenic |
| CGGGTTACATTCACAAACCT+GGG | 0.586223 | 6_2:-63302859 | Msa0923260:CDS |
| CCAGGTTTGTGAATGTAACC+CGG | 0.592655 | 6_2:+63302860 | None:intergenic |
| CTGAAGTTGTCTTACATGGA+AGG | 0.594214 | 6_2:-63301805 | Msa0923260:intron |
| GGAAGCTGGAGTCACAGTTG+TGG | 0.594495 | 6_2:-63300552 | Msa0923260:CDS |
| CAGTCCAGAAAGGAGGCACA+GGG | 0.603456 | 6_2:-63304816 | Msa0923260:five_prime_UTR |
| GGCCGTCGTATGGGACACGC+TGG | 0.604310 | 6_2:-63301277 | Msa0923260:CDS |
| CCACACATGTGGATTGTCCA+AGG | 0.608972 | 6_2:+63302272 | None:intergenic |
| CTTCTGTTTGAGGATCTGCT+AGG | 0.613418 | 6_2:+63302194 | None:intergenic |
| TGTGACTCCAGCTTCCCTAA+GGG | 0.620490 | 6_2:+63300559 | None:intergenic |
| GAATAGTCAGTCCAGAAAGG+AGG | 0.625179 | 6_2:-63304823 | Msa0923260:five_prime_UTR |
| CTAGCAGATCCTCAAACAGA+AGG | 0.626606 | 6_2:-63302193 | Msa0923260:intron |
| TGGAACTTTGACATATGAAG+CGG | 0.628520 | 6_2:-63302813 | Msa0923260:intron |
| TATGGAACGAATATGGTTGG+CGG | 0.631678 | 6_2:-63304546 | Msa0923260:CDS |
| CGTCGTATGGGACACGCTGG+AGG | 0.636732 | 6_2:-63301274 | Msa0923260:intron |
| ATAGCTACCATATCATGTTG+AGG | 0.638728 | 6_2:+63304336 | None:intergenic |
| TGAATGACTATTCAGGAAAG+CGG | 0.638917 | 6_2:-63301349 | Msa0923260:intron |
| TATTATGGAAGCGGTTGAAG+CGG | 0.641435 | 6_2:-63304394 | Msa0923260:CDS |
| CCCTGGTATCATCAAGCCCG+GGG | 0.644773 | 6_2:-63302903 | Msa0923260:CDS |
| ATGAGAAGAGCTTTGTAACG+CGG | 0.644880 | 6_2:+63304703 | None:intergenic |
| AGAAGAGCTTTGTAACGCGG+TGG | 0.645675 | 6_2:+63304706 | None:intergenic |
| CTTGGACAATCCACATGTGT+GGG | 0.646091 | 6_2:-63302271 | Msa0923260:CDS |
| TACTCCGAAGAAAGGCGGAA+CGG | 0.647259 | 6_2:-63304520 | Msa0923260:CDS |
| TGTGCAGCTATTGTGTCGGG+TGG | 0.647703 | 6_2:-63300611 | Msa0923260:intron |
| CCTTGGACAATCCACATGTG+TGG | 0.655816 | 6_2:-63302272 | Msa0923260:CDS |
| GTGTCCCATACGACGGCCAG+GGG | 0.661520 | 6_2:+63301282 | None:intergenic |
| CCCCGGGCTTGATGATACCA+GGG | 0.670275 | 6_2:+63302903 | None:intergenic |
| ATAGCAGCAGCAGCAAAAGG+AGG | 0.675861 | 6_2:+63304414 | None:intergenic |
| GGTGTTACTCCGAAGAAAGG+CGG | 0.696917 | 6_2:-63304525 | Msa0923260:CDS |
| TTTGTCGACGAACACCGCGG+GGG | 0.744903 | 6_2:+63304638 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTAATTATTATTATCATTAT+AGG | - | chr6_2:63301197-63301216 | Msa0923260:intron | 10.0% |
| !!! | ATTATAATTGTTATTGTTAT+AGG | - | chr6_2:63301521-63301540 | Msa0923260:intron | 10.0% |
| !!! | ACTATTTATAAAGTTTTTAA+CGG | - | chr6_2:63303898-63303917 | Msa0923260:intron | 10.0% |
| !!! | ATTTTAATTTTCTAAAGTTT+TGG | - | chr6_2:63304036-63304055 | Msa0923260:intron | 10.0% |
| !!! | ACAATTTTAGAAAATAAAAG+TGG | - | chr6_2:63301175-63301194 | Msa0923260:intron | 15.0% |
| !!! | TGATTTTCTCAAATTATTAA+CGG | + | chr6_2:63301275-63301294 | None:intergenic | 15.0% |
| !! | CAAATATTAATACCATTTAA+GGG | + | chr6_2:63301648-63301667 | None:intergenic | 15.0% |
| !! | TCAAATATTAATACCATTTA+AGG | + | chr6_2:63301649-63301668 | None:intergenic | 15.0% |
| !! | GGTATTAATATTTGAAAAAA+CGG | - | chr6_2:63301654-63301673 | Msa0923260:intron | 15.0% |
| !! | TTTATATAGATGAATGAAAA+CGG | + | chr6_2:63302808-63302827 | None:intergenic | 15.0% |
| !! | AATAGTTATAAACAAATAGA+TGG | + | chr6_2:63302966-63302985 | None:intergenic | 15.0% |
| !!! | ATAAATTTTTGTCTTTTACT+TGG | - | chr6_2:63303371-63303390 | Msa0923260:intron | 15.0% |
| !!! | ATTTTGCTTATATTTTGAAA+CGG | + | chr6_2:63304167-63304186 | None:intergenic | 15.0% |
| !!! | ATAAGCAAAATTTACTTTTT+AGG | + | chr6_2:63304265-63304284 | None:intergenic | 15.0% |
| !! | AATGTAAACCAAATATATGT+TGG | - | chr6_2:63301686-63301705 | Msa0923260:intron | 20.0% |
| !!! | TTTAGTTTTGAGTTTAATGA+TGG | - | chr6_2:63301884-63301903 | Msa0923260:intron | 20.0% |
| !!! | TTTATGGCTTTTGATAAAAT+TGG | - | chr6_2:63302148-63302167 | Msa0923260:intron | 20.0% |
| !!! | TTATGGCTTTTGATAAAATT+GGG | - | chr6_2:63302149-63302168 | Msa0923260:intron | 20.0% |
| !!! | AAGTTAAGATTTTTTATGTC+AGG | - | chr6_2:63302300-63302319 | Msa0923260:intron | 20.0% |
| !! | AAAGAACTTCAAATTTCAAA+TGG | + | chr6_2:63302908-63302927 | None:intergenic | 20.0% |
| !! | CTATTTGTTTATAACTATTC+AGG | - | chr6_2:63302967-63302986 | Msa0923260:intron | 20.0% |
| !! | CTAATAAAATAATATAGGTG+AGG | + | chr6_2:63303145-63303164 | None:intergenic | 20.0% |
| !! | AATTCAGGTATTATTCTTAT+TGG | - | chr6_2:63303278-63303297 | Msa0923260:intron | 20.0% |
| !! | TATATTATGAATGACTATTC+AGG | - | chr6_2:63303928-63303947 | Msa0923260:intron | 20.0% |
| !!! | ATAAGCAAAATTCACTTTTT+AGG | - | chr6_2:63304176-63304195 | Msa0923260:intron | 20.0% |
| !!! | ATTTTGCTTATATTTTGACA+CGG | - | chr6_2:63304274-63304293 | Msa0923260:intron | 20.0% |
| !! | TATATATTTGACCATGTTTA+CGG | - | chr6_2:63304303-63304322 | Msa0923260:intron | 20.0% |
| !!! | TGAAAGTGTGTTTGTTTTTA+GGG | + | chr6_2:63300516-63300535 | None:intergenic | 25.0% |
| !!! | TTGTTGTTTGTATTACTGAA+GGG | - | chr6_2:63300922-63300941 | Msa0923260:intron | 25.0% |
| !! | GTAATTGTTGTTGTTGTTAT+AGG | - | chr6_2:63301053-63301072 | Msa0923260:intron | 25.0% |
| ! | CATTATAGGTTAATATGTGT+TGG | - | chr6_2:63301211-63301230 | Msa0923260:intron | 25.0% |
| ! | ATAGGTTAATATGTGATGTA+AGG | - | chr6_2:63301539-63301558 | Msa0923260:intron | 25.0% |
| !!! | TATAAAAGACCTGCTTTTTT+TGG | - | chr6_2:63302053-63302072 | Msa0923260:intron | 25.0% |
| !!! | ATAAAAGACCTGCTTTTTTT+GGG | - | chr6_2:63302054-63302073 | Msa0923260:intron | 25.0% |
| ! | TGCTTCTTATATCAATGTAT+CGG | - | chr6_2:63302274-63302293 | Msa0923260:CDS | 25.0% |
| !! | TCTTTTCAACATCAAAAACA+AGG | + | chr6_2:63302502-63302521 | None:intergenic | 25.0% |
| !!! | TATGATACAGTTTTGTTACA+TGG | - | chr6_2:63302545-63302564 | Msa0923260:intron | 25.0% |
| ! | AACAACAGTAAATTGAGAAA+GGG | + | chr6_2:63302763-63302782 | None:intergenic | 25.0% |
| ! | TAACAACAGTAAATTGAGAA+AGG | + | chr6_2:63302764-63302783 | None:intergenic | 25.0% |
| ! | ATTTATTCCTGTTGGATTAA+TGG | - | chr6_2:63303223-63303242 | Msa0923260:intron | 25.0% |
| ! | TTTATTCCTGTTGGATTAAT+GGG | - | chr6_2:63303224-63303243 | Msa0923260:intron | 25.0% |
| ! | ATTATTCTTATTGGAGAGAT+AGG | - | chr6_2:63303287-63303306 | Msa0923260:intron | 25.0% |
| ! | TTTGAAAAAGTTTGTCTTGT+CGG | - | chr6_2:63303411-63303430 | Msa0923260:intron | 25.0% |
| ! | ATTTGAAAAAGTTTGTCTTG+TGG | - | chr6_2:63303410-63303429 | Msa0923260:intron | 25.0% |
| ! | TTTGAAAAAGTTTGTCTTGT+GGG | - | chr6_2:63303411-63303430 | Msa0923260:intron | 25.0% |
| !!! | GAAGGTACTTAAATAGAAAT+TGG | - | chr6_2:63303497-63303516 | Msa0923260:intron | 25.0% |
| !!! | TTCTAAAGTTTTGGAAATGA+TGG | - | chr6_2:63304045-63304064 | Msa0923260:intron | 25.0% |
| !!! | ATTGATCTTGAATTTTAGCA+TGG | - | chr6_2:63304121-63304140 | Msa0923260:intron | 25.0% |
| !!! | TTGATCTTGAATTTTAGCAT+GGG | - | chr6_2:63304122-63304141 | Msa0923260:intron | 25.0% |
| ! | CATTCATTTAATGATGTATG+TGG | - | chr6_2:63304201-63304220 | Msa0923260:intron | 25.0% |
| ! | GATGTATGTGGTTTATAATA+TGG | + | chr6_2:63304228-63304247 | None:intergenic | 25.0% |
| ! | CATTCATTTAATGATGTATG+TGG | + | chr6_2:63304201-63304220 | None:intergenic | 25.0% |
| ! | ATATATTTGACCATGTTTAC+GGG | - | chr6_2:63304304-63304323 | Msa0923260:intron | 25.0% |
| !! | TTTTACAATCAAGGATGATA+TGG | - | chr6_2:63304396-63304415 | Msa0923260:CDS | 25.0% |
| ! | TTTACAATCAAGGATGATAT+GGG | - | chr6_2:63304397-63304416 | Msa0923260:CDS | 25.0% |
| ! | ATGAATATGTACATGATCTA+GGG | + | chr6_2:63304615-63304634 | None:intergenic | 25.0% |
| ! | AATGAATATGTACATGATCT+AGG | + | chr6_2:63304616-63304635 | None:intergenic | 25.0% |
| !! | ACATATTCATTTTACTTCAG+TGG | - | chr6_2:63304625-63304644 | Msa0923260:CDS | 25.0% |
| !!! | TTTGATATTTTCAAGCAGAA+AGG | - | chr6_2:63304784-63304803 | Msa0923260:five_prime_UTR | 25.0% |
| !! | GTGAAAGTGTGTTTGTTTTT+AGG | + | chr6_2:63300517-63300536 | None:intergenic | 30.0% |
| !! | CTTGTTGTTTGTATTACTGA+AGG | - | chr6_2:63300921-63300940 | Msa0923260:intron | 30.0% |
| TGATTGATCTAGTGAAAGAT+AGG | - | chr6_2:63301087-63301106 | Msa0923260:intron | 30.0% | |
| GATTGATCTAGTGAAAGATA+GGG | - | chr6_2:63301088-63301107 | Msa0923260:intron | 30.0% | |
| TCTCAAATTATTAACGGTGT+TGG | + | chr6_2:63301269-63301288 | None:intergenic | 30.0% | |
| TGATTGATCTGGTAAAAGAT+AGG | - | chr6_2:63301371-63301390 | Msa0923260:intron | 30.0% | |
| GATTGATCTGGTAAAAGATA+GGG | - | chr6_2:63301372-63301391 | Msa0923260:intron | 30.0% | |
| TGTAAGGTCTAGTTAAAGAA+AGG | - | chr6_2:63301555-63301574 | Msa0923260:intron | 30.0% | |
| GTAAGGTCTAGTTAAAGAAA+GGG | - | chr6_2:63301556-63301575 | Msa0923260:intron | 30.0% | |
| TCTAGTTAAAGAAAGGGTTT+GGG | - | chr6_2:63301562-63301581 | Msa0923260:intron | 30.0% | |
| !! | GAGTGTAAAAAAGTTCTAAG+AGG | - | chr6_2:63301934-63301953 | Msa0923260:intron | 30.0% |
| AAAGTCTACACAAATTTGCA+TGG | + | chr6_2:63302012-63302031 | None:intergenic | 30.0% | |
| ATATCAAACCCAAAAAAAGC+AGG | + | chr6_2:63302065-63302084 | None:intergenic | 30.0% | |
| TTTGTCTGTTTGTCTATTAG+TGG | - | chr6_2:63302084-63302103 | Msa0923260:intron | 30.0% | |
| TTGTCTATTAGTGGTAAACT+TGG | - | chr6_2:63302093-63302112 | Msa0923260:intron | 30.0% | |
| AAAAGCCATAAACAAACCAA+AGG | + | chr6_2:63302140-63302159 | None:intergenic | 30.0% | |
| !!! | TTTCCTTGTGTTTTGAGTTT+GGG | - | chr6_2:63302196-63302215 | Msa0923260:CDS | 30.0% |
| ATGTAAAATTGGAATCATGC+CGG | - | chr6_2:63302405-63302424 | Msa0923260:intron | 30.0% | |
| TATGGTATTATTATCTGTCG+TGG | - | chr6_2:63302684-63302703 | Msa0923260:intron | 30.0% | |
| TTATGTTTCAACTCTGCTAT+GGG | + | chr6_2:63302717-63302736 | None:intergenic | 30.0% | |
| ATTATGTTTCAACTCTGCTA+TGG | + | chr6_2:63302718-63302737 | None:intergenic | 30.0% | |
| GGGCAAAAAAATAAGAAAGT+TGG | + | chr6_2:63302743-63302762 | None:intergenic | 30.0% | |
| ! | ACAAAGTTTGTTCCATTGAA+GGG | + | chr6_2:63303052-63303071 | None:intergenic | 30.0% |
| ! | AACAAAGTTTGTTCCATTGA+AGG | + | chr6_2:63303053-63303072 | None:intergenic | 30.0% |
| TCCTAATGATTTATTCCTGT+TGG | - | chr6_2:63303215-63303234 | Msa0923260:intron | 30.0% | |
| TCCAACAGGAATAAATCATT+AGG | + | chr6_2:63303219-63303238 | None:intergenic | 30.0% | |
| ACTGTTTGTTTGTGTAATTC+AGG | - | chr6_2:63303263-63303282 | Msa0923260:intron | 30.0% | |
| TTGAAAAAGTTTGTCTTGTG+GGG | - | chr6_2:63303445-63303464 | Msa0923260:intron | 30.0% | |
| ! | CTTTTCATGAAACAGAGAAA+AGG | - | chr6_2:63303528-63303547 | Msa0923260:intron | 30.0% |
| ATCACAGTTAATGAGCATTA+TGG | + | chr6_2:63303614-63303633 | None:intergenic | 30.0% | |
| ! | CGTAGATGTAAATCTTCTTT+TGG | - | chr6_2:63303734-63303753 | Msa0923260:intron | 30.0% |
| ! | AAATCTTCTTTTGGTGAATG+AGG | - | chr6_2:63303743-63303762 | Msa0923260:intron | 30.0% |
| GAGTTAAATTTAAGTCCGTT+AGG | - | chr6_2:63303765-63303784 | Msa0923260:intron | 30.0% | |
| ATGGTGATATTTATTTGTGC+TGG | - | chr6_2:63303804-63303823 | Msa0923260:intron | 30.0% | |
| ! | TATTTTCTGTTCTACACGAA+AGG | - | chr6_2:63303828-63303847 | Msa0923260:intron | 30.0% |
| AAAGAACAAACATATGCTCA+TGG | - | chr6_2:63303851-63303870 | Msa0923260:intron | 30.0% | |
| ! | GTGATATTTTCTATGATGAC+AGG | + | chr6_2:63304071-63304090 | None:intergenic | 30.0% |
| !!! | TGCTTATATTTTGAAACGGA+GGG | + | chr6_2:63304163-63304182 | None:intergenic | 30.0% |
| !!! | TTGCTTATATTTTGAAACGG+AGG | + | chr6_2:63304164-63304183 | None:intergenic | 30.0% |
| !!! | ATGAGCTGTTTTTACAATCA+AGG | - | chr6_2:63304387-63304406 | Msa0923260:CDS | 30.0% |
| TTACAATCAAGGATGATATG+GGG | - | chr6_2:63304398-63304417 | Msa0923260:CDS | 30.0% | |
| CTCCAAAGAACTAATAGAAA+CGG | + | chr6_2:63304451-63304470 | None:intergenic | 30.0% | |
| ! | GTTTCTATTAGTTCTTTGGA+GGG | - | chr6_2:63304450-63304469 | Msa0923260:CDS | 30.0% |
| AATAGCTGCACAAGAAAATA+AGG | + | chr6_2:63304665-63304684 | None:intergenic | 30.0% | |
| CTGCTTGAAAATATCAAACA+TGG | + | chr6_2:63304782-63304801 | None:intergenic | 30.0% | |
| GATCGAATATGGAACGAATA+TGG | - | chr6_2:63300731-63300750 | Msa0923260:intron | 35.0% | |
| GAATATGGAACGAATATGGT+TGG | - | chr6_2:63300735-63300754 | Msa0923260:intron | 35.0% | |
| ATAGCTACCATATCATGTTG+AGG | + | chr6_2:63300951-63300970 | None:intergenic | 35.0% | |
| ATCTAGTGAAAGATAGGGTT+AGG | - | chr6_2:63301093-63301112 | Msa0923260:intron | 35.0% | |
| TCTAGTGAAAGATAGGGTTA+GGG | - | chr6_2:63301094-63301113 | Msa0923260:intron | 35.0% | |
| !! | TTCATAGGTGTTGATTGATC+TGG | - | chr6_2:63301360-63301379 | Msa0923260:intron | 35.0% |
| ATCTGGTAAAAGATAGGGTT+GGG | - | chr6_2:63301377-63301396 | Msa0923260:intron | 35.0% | |
| ! | CCATTTTCCCAAATTACAAC+CGG | + | chr6_2:63301450-63301469 | None:intergenic | 35.0% |
| GTCTAGTTAAAGAAAGGGTT+TGG | - | chr6_2:63301561-63301580 | Msa0923260:intron | 35.0% | |
| TAATACCATTTAAGGGTCAG+TGG | + | chr6_2:63301641-63301660 | None:intergenic | 35.0% | |
| AGCTGACACCAACATATATT+TGG | + | chr6_2:63301697-63301716 | None:intergenic | 35.0% | |
| TGTCAATGTGTGACATATGT+CGG | + | chr6_2:63301738-63301757 | None:intergenic | 35.0% | |
| !! | AAGTTCTAAGAGGTGAGTTA+TGG | - | chr6_2:63301944-63301963 | Msa0923260:intron | 35.0% |
| !!! | GTTTCCTTGTGTTTTGAGTT+TGG | - | chr6_2:63302195-63302214 | Msa0923260:CDS | 35.0% |
| ACTAAATTGCACAATCCATG+AGG | + | chr6_2:63302251-63302270 | None:intergenic | 35.0% | |
| CAATCCAAAACTCGTTTGAT+AGG | - | chr6_2:63302349-63302368 | Msa0923260:intron | 35.0% | |
| ! | ATTCCAATTTTACATTCCCC+GGG | + | chr6_2:63302400-63302419 | None:intergenic | 35.0% |
| ! | GATTCCAATTTTACATTCCC+CGG | + | chr6_2:63302401-63302420 | None:intergenic | 35.0% |
| TGTAAAATTGGAATCATGCC+GGG | - | chr6_2:63302406-63302425 | Msa0923260:intron | 35.0% | |
| ! | ATTGGAATTGTTTCTCGTTC+TGG | - | chr6_2:63302451-63302470 | Msa0923260:intron | 35.0% |
| TGGAACTTTGACATATGAAG+CGG | - | chr6_2:63302471-63302490 | Msa0923260:intron | 35.0% | |
| ! | ACTGTTGAGTTTGTTCTAGT+AGG | - | chr6_2:63302521-63302540 | Msa0923260:intron | 35.0% |
| ! | CTGTTGAGTTTGTTCTAGTA+GGG | - | chr6_2:63302522-63302541 | Msa0923260:intron | 35.0% |
| TATGTTTCAACTCTGCTATG+GGG | + | chr6_2:63302716-63302735 | None:intergenic | 35.0% | |
| ! | GTTGTCTTTTATTGAGTACC+AGG | - | chr6_2:63302863-63302882 | Msa0923260:CDS | 35.0% |
| ! | TTTTGATGCATACAGTACGA+TGG | - | chr6_2:63302925-63302944 | Msa0923260:CDS | 35.0% |
| CAAATAGATGGCTTATCCAT+GGG | + | chr6_2:63302954-63302973 | None:intergenic | 35.0% | |
| ACAAATAGATGGCTTATCCA+TGG | + | chr6_2:63302955-63302974 | None:intergenic | 35.0% | |
| ! | CAAAGTTTGTTCCATTGAAG+GGG | + | chr6_2:63303051-63303070 | None:intergenic | 35.0% |
| AAAGATGTACCTTCTGTTTG+AGG | + | chr6_2:63303103-63303122 | None:intergenic | 35.0% | |
| ATTCTTATTGGAGAGATAGG+AGG | - | chr6_2:63303290-63303309 | Msa0923260:intron | 35.0% | |
| TGCACAGCTAACAATTAAGA+GGG | + | chr6_2:63303352-63303371 | None:intergenic | 35.0% | |
| ATGCACAGCTAACAATTAAG+AGG | + | chr6_2:63303353-63303372 | None:intergenic | 35.0% | |
| TTCCATGTAAGACAACTTCA+GGG | + | chr6_2:63303480-63303499 | None:intergenic | 35.0% | |
| CACCAGTTAATAACACCTAA+CGG | + | chr6_2:63303783-63303802 | None:intergenic | 35.0% | |
| !! | AGGTGTTATTAACTGGTGAA+TGG | - | chr6_2:63303785-63303804 | Msa0923260:intron | 35.0% |
| TGAATGACTATTCAGGAAAG+CGG | - | chr6_2:63303935-63303954 | Msa0923260:intron | 35.0% | |
| !!! | TTGCTTATATTTTGACACGG+AGG | - | chr6_2:63304277-63304296 | Msa0923260:intron | 35.0% |
| !!! | TGCTTATATTTTGACACGGA+GGG | - | chr6_2:63304278-63304297 | Msa0923260:intron | 35.0% |
| TATTCAAACACCCGTAAACA+TGG | + | chr6_2:63304317-63304336 | None:intergenic | 35.0% | |
| CCTATAAGACAAGTGCTAAT+TGG | + | chr6_2:63304362-63304381 | None:intergenic | 35.0% | |
| CCAATTAGCACTTGTCTTAT+AGG | - | chr6_2:63304359-63304378 | Msa0923260:CDS | 35.0% | |
| TACAATCAAGGATGATATGG+GGG | - | chr6_2:63304399-63304418 | Msa0923260:CDS | 35.0% | |
| ! | TGCCGTTTCTATTAGTTCTT+TGG | - | chr6_2:63304446-63304465 | Msa0923260:CDS | 35.0% |
| ! | CGTTTCTATTAGTTCTTTGG+AGG | - | chr6_2:63304449-63304468 | Msa0923260:CDS | 35.0% |
| ! | TGCTTTATTGTCATCACTGA+AGG | + | chr6_2:63304569-63304588 | None:intergenic | 35.0% |
| ! | ATGAGAAGAGCTTTGTAACG+CGG | + | chr6_2:63300584-63300603 | None:intergenic | 40.0% |
| GTGATCTGTCAAGGAATAAC+CGG | - | chr6_2:63300678-63300697 | Msa0923260:intron | 40.0% | |
| CAAGGAATAACCGGCAAAAA+CGG | - | chr6_2:63300687-63300706 | Msa0923260:intron | 40.0% | |
| TCCATATTCGATCGCTTGTT+CGG | + | chr6_2:63300724-63300743 | None:intergenic | 40.0% | |
| TATGGAACGAATATGGTTGG+CGG | - | chr6_2:63300738-63300757 | Msa0923260:intron | 40.0% | |
| ! | TCCGGTTTTCAATTCTGTTG+CGG | - | chr6_2:63300800-63300819 | Msa0923260:intron | 40.0% |
| TCCGCAACAGAATTGAAAAC+CGG | + | chr6_2:63300804-63300823 | None:intergenic | 40.0% | |
| ATAATAGCAGCAGCAGCAAA+AGG | + | chr6_2:63300876-63300895 | None:intergenic | 40.0% | |
| ! | TTTTGCTGCTGCTGCTATTA+TGG | - | chr6_2:63300875-63300894 | Msa0923260:intron | 40.0% |
| TATTATGGAAGCGGTTGAAG+CGG | - | chr6_2:63300890-63300909 | Msa0923260:intron | 40.0% | |
| AGGGATTCCTCAACATGATA+TGG | - | chr6_2:63300941-63300960 | Msa0923260:intron | 40.0% | |
| ! | ATGTGTTGGTCTATGAAGCA+CGG | - | chr6_2:63301225-63301244 | Msa0923260:intron | 40.0% |
| GCACAAACACTCTTCAGATT+AGG | + | chr6_2:63301340-63301359 | None:intergenic | 40.0% | |
| !! | GAAGAGTGTTTGTGCTTCAT+AGG | - | chr6_2:63301345-63301364 | Msa0923260:intron | 40.0% |
| GATCTGGTAAAAGATAGGGT+TGG | - | chr6_2:63301376-63301395 | Msa0923260:intron | 40.0% | |
| TCTGGTAAAAGATAGGGTTG+GGG | - | chr6_2:63301378-63301397 | Msa0923260:intron | 40.0% | |
| ! | TGTAGACACCGGTTGTAATT+TGG | - | chr6_2:63301439-63301458 | Msa0923260:intron | 40.0% |
| ! | GTAGACACCGGTTGTAATTT+GGG | - | chr6_2:63301440-63301459 | Msa0923260:intron | 40.0% |
| CCGGTTGTAATTTGGGAAAA+TGG | - | chr6_2:63301447-63301466 | Msa0923260:intron | 40.0% | |
| ATATGCCACTGACCCTTAAA+TGG | - | chr6_2:63301633-63301652 | Msa0923260:CDS | 40.0% | |
| ACACCTTTGATGTGACATGT+AGG | - | chr6_2:63301757-63301776 | Msa0923260:intron | 40.0% | |
| ! | TAGGTGCTACATGCAAACTA+GGG | - | chr6_2:63301776-63301795 | Msa0923260:intron | 40.0% |
| !! | GTGAGCCTTTGGTTTGTTTA+TGG | - | chr6_2:63302132-63302151 | Msa0923260:intron | 40.0% |
| ATGCCCAAACTCAAAACACA+AGG | + | chr6_2:63302202-63302221 | None:intergenic | 40.0% | |
| ! | TGGTCCTATCAAACGAGTTT+TGG | + | chr6_2:63302356-63302375 | None:intergenic | 40.0% |
| !!! | GGATTTTTTTCAGCCACCAT+AGG | - | chr6_2:63302591-63302610 | Msa0923260:intron | 40.0% |
| CACCATAGGCAATTTGTGAA+GGG | - | chr6_2:63302605-63302624 | Msa0923260:intron | 40.0% | |
| ! | ACAACATTGCGGATTATGGA+AGG | + | chr6_2:63302634-63302653 | None:intergenic | 40.0% |
| ! | AGTCACAACATTGCGGATTA+TGG | + | chr6_2:63302638-63302657 | None:intergenic | 40.0% |
| ATAAGTGCACAAGATTCGCA+GGG | + | chr6_2:63302667-63302686 | None:intergenic | 40.0% | |
| ATGTTTCAACTCTGCTATGG+GGG | + | chr6_2:63302715-63302734 | None:intergenic | 40.0% | |
| ATTGAGTACCAGGCTTATCT+TGG | - | chr6_2:63302873-63302892 | Msa0923260:CDS | 40.0% | |
| TTGAGTACCAGGCTTATCTT+GGG | - | chr6_2:63302874-63302893 | Msa0923260:CDS | 40.0% | |
| ATTAACTCCCAAGATAAGCC+TGG | + | chr6_2:63302884-63302903 | None:intergenic | 40.0% | |
| GTTTACCAAACAACTGCTGT+TGG | - | chr6_2:63302989-63303008 | Msa0923260:intron | 40.0% | |
| GATCTGCTAGGAACTTTGTA+AGG | + | chr6_2:63303081-63303100 | None:intergenic | 40.0% | |
| TTCCTGTTGGATTAATGGGA+TGG | - | chr6_2:63303228-63303247 | Msa0923260:intron | 40.0% | |
| AAAAGTTTGTCTTGTGGGGA+AGG | - | chr6_2:63303449-63303468 | Msa0923260:intron | 40.0% | |
| AAAGTTTGTCTTGTGGGGAA+GGG | - | chr6_2:63303450-63303469 | Msa0923260:intron | 40.0% | |
| ATCCCTGAAGTTGTCTTACA+TGG | - | chr6_2:63303475-63303494 | Msa0923260:intron | 40.0% | |
| CTTCCATGTAAGACAACTTC+AGG | + | chr6_2:63303481-63303500 | None:intergenic | 40.0% | |
| CTGAAGTTGTCTTACATGGA+AGG | - | chr6_2:63303479-63303498 | Msa0923260:intron | 40.0% | |
| TTTAACAGGCACACTTGCAA+TGG | + | chr6_2:63303637-63303656 | None:intergenic | 40.0% | |
| ATTGCAAGTGTGCCTGTTAA+AGG | - | chr6_2:63303636-63303655 | Msa0923260:intron | 40.0% | |
| CTAAAGTTGGGACCTTTAAC+AGG | + | chr6_2:63303651-63303670 | None:intergenic | 40.0% | |
| ! | AAAGGTCCCAACTTTAGTTC+TGG | - | chr6_2:63303654-63303673 | Msa0923260:intron | 40.0% |
| !! | AAGGTCCCAACTTTAGTTCT+GGG | - | chr6_2:63303655-63303674 | Msa0923260:intron | 40.0% |
| GCAAACCCAGAACTAAAGTT+GGG | + | chr6_2:63303663-63303682 | None:intergenic | 40.0% | |
| AGCAAACCCAGAACTAAAGT+TGG | + | chr6_2:63303664-63303683 | None:intergenic | 40.0% | |
| !! | AACTTTAGTTCTGGGTTTGC+TGG | - | chr6_2:63303663-63303682 | Msa0923260:intron | 40.0% |
| !! | GTCCGTTAGGTGTTATTAAC+TGG | - | chr6_2:63303778-63303797 | Msa0923260:intron | 40.0% |
| GAATGACTATTCAGGAAAGC+GGG | - | chr6_2:63303936-63303955 | Msa0923260:intron | 40.0% | |
| CCAGCAATAAATGCAACAAC+AGG | + | chr6_2:63303971-63303990 | None:intergenic | 40.0% | |
| CCTGTTGTTGCATTTATTGC+TGG | - | chr6_2:63303968-63303987 | Msa0923260:intron | 40.0% | |
| TGGAGGGTGAGAACAATTTA+TGG | - | chr6_2:63304466-63304485 | Msa0923260:CDS | 40.0% | |
| GGAGGGTGAGAACAATTTAT+GGG | - | chr6_2:63304467-63304486 | Msa0923260:CDS | 40.0% | |
| TTCTTGTGCAGCTATTGTGT+CGG | - | chr6_2:63304669-63304688 | Msa0923260:CDS | 40.0% | |
| AAGACAAAATCAGCACCCTT+AGG | - | chr6_2:63304710-63304729 | Msa0923260:CDS | 40.0% | |
| AGACAAAATCAGCACCCTTA+GGG | - | chr6_2:63304711-63304730 | Msa0923260:CDS | 40.0% | |
| AGGCTTAGTGCAATAGTTTG+AGG | - | chr6_2:63304804-63304823 | Msa0923260:five_prime_UTR | 40.0% | |
| GAATAGTCAGTCCAGAAAGG+AGG | - | chr6_2:63300461-63300480 | Msa0923260:three_prime_UTR | 45.0% | |
| !! | GTGAAACGTTCCGTTTTTGC+CGG | + | chr6_2:63300700-63300719 | None:intergenic | 45.0% |
| ACCGAACAAGCGATCGAATA+TGG | - | chr6_2:63300720-63300739 | Msa0923260:intron | 45.0% | |
| AAAGGCGGAACGGAACATTT+AGG | - | chr6_2:63300774-63300793 | Msa0923260:intron | 45.0% | |
| AAGGCGGAACGGAACATTTA+GGG | - | chr6_2:63300775-63300794 | Msa0923260:intron | 45.0% | |
| ! | AACGGAACATTTAGGGCTTC+CGG | - | chr6_2:63300782-63300801 | Msa0923260:intron | 45.0% |
| TGCTGCTGCTATTATGGAAG+CGG | - | chr6_2:63300881-63300900 | Msa0923260:intron | 45.0% | |
| ! | TGTGTTGGTCTATGAAGCAC+GGG | - | chr6_2:63301226-63301245 | Msa0923260:intron | 45.0% |
| GCACATACACATGTAGACAC+CGG | - | chr6_2:63301428-63301447 | Msa0923260:intron | 45.0% | |
| GCACCTACATGTCACATCAA+AGG | + | chr6_2:63301763-63301782 | None:intergenic | 45.0% | |
| ! | GTAGGTGCTACATGCAAACT+AGG | - | chr6_2:63301775-63301794 | Msa0923260:intron | 45.0% |
| ATTGCTCATGTGTGAGCCTT+TGG | - | chr6_2:63302121-63302140 | Msa0923260:intron | 45.0% | |
| ! | TTGATGATACCAGGGCAGTT+TGG | + | chr6_2:63302376-63302395 | None:intergenic | 45.0% |
| AAGCCCGGGGAATGTAAAAT+TGG | - | chr6_2:63302394-63302413 | Msa0923260:intron | 45.0% | |
| CCAGGTTTGTGAATGTAACC+CGG | + | chr6_2:63302427-63302446 | None:intergenic | 45.0% | |
| CGGGTTACATTCACAAACCT+GGG | - | chr6_2:63302425-63302444 | Msa0923260:intron | 45.0% | |
| TCCAACACAACATTCTGTCG+TGG | + | chr6_2:63302574-63302593 | None:intergenic | 45.0% | |
| CCTTCACAAATTGCCTATGG+TGG | + | chr6_2:63302607-63302626 | None:intergenic | 45.0% | |
| CCACCATAGGCAATTTGTGA+AGG | - | chr6_2:63302604-63302623 | Msa0923260:intron | 45.0% | |
| CTCCCTTCACAAATTGCCTA+TGG | + | chr6_2:63302610-63302629 | None:intergenic | 45.0% | |
| CATAGGCAATTTGTGAAGGG+AGG | - | chr6_2:63302608-63302627 | Msa0923260:intron | 45.0% | |
| GATGTGCAGTCACAACATTG+CGG | + | chr6_2:63302645-63302664 | None:intergenic | 45.0% | |
| CATAAGTGCACAAGATTCGC+AGG | + | chr6_2:63302668-63302687 | None:intergenic | 45.0% | |
| CTGCGAATCTTGTGCACTTA+TGG | - | chr6_2:63302666-63302685 | Msa0923260:intron | 45.0% | |
| TACAGTACGATGGTTACCCA+TGG | - | chr6_2:63302935-63302954 | Msa0923260:CDS | 45.0% | |
| CTTGGACAATCCACATGTGT+GGG | - | chr6_2:63303013-63303032 | Msa0923260:intron | 45.0% | |
| CTTCTGTTTGAGGATCTGCT+AGG | + | chr6_2:63303093-63303112 | None:intergenic | 45.0% | |
| CTAGCAGATCCTCAAACAGA+AGG | - | chr6_2:63303091-63303110 | Msa0923260:intron | 45.0% | |
| GACCATCCCATTAATCCAAC+AGG | + | chr6_2:63303233-63303252 | None:intergenic | 45.0% | |
| TGGGGTTATGGACATGCAAA+AGG | - | chr6_2:63303689-63303708 | Msa0923260:intron | 45.0% | |
| TCTTGTGCAGCTATTGTGTC+GGG | - | chr6_2:63304670-63304689 | Msa0923260:CDS | 45.0% | |
| !!! | TGGCAGCTCCAATTTTAGCT+GGG | + | chr6_2:63304762-63304781 | None:intergenic | 45.0% |
| !! | ATGGCAGCTCCAATTTTAGC+TGG | + | chr6_2:63304763-63304782 | None:intergenic | 45.0% |
| !! | ATAAACTAATAAAATAATAT+AGG | + | chr6_2:63303150-63303169 | None:intergenic | 5.0% |
| ! | AGAAGAGCTTTGTAACGCGG+TGG | + | chr6_2:63300581-63300600 | None:intergenic | 50.0% |
| !! | GGTGTTACTCCGAAGAAAGG+CGG | - | chr6_2:63300759-63300778 | Msa0923260:intron | 50.0% |
| TACTCCGAAGAAAGGCGGAA+CGG | - | chr6_2:63300764-63300783 | Msa0923260:intron | 50.0% | |
| TGTTCCGTTCCGCCTTTCTT+CGG | + | chr6_2:63300771-63300790 | None:intergenic | 50.0% | |
| ATAGCAGCAGCAGCAAAAGG+AGG | + | chr6_2:63300873-63300892 | None:intergenic | 50.0% | |
| GTGCTACATGCAAACTAGGG+TGG | - | chr6_2:63301779-63301798 | Msa0923260:intron | 50.0% | |
| AACACTAGCCAGTTGCCTCA+TGG | - | chr6_2:63302233-63302252 | Msa0923260:CDS | 50.0% | |
| TGCACAATCCATGAGGCAAC+TGG | + | chr6_2:63302244-63302263 | None:intergenic | 50.0% | |
| TTGATAGGACCAAACTGCCC+TGG | - | chr6_2:63302364-63302383 | Msa0923260:intron | 50.0% | |
| CCGGGTTACATTCACAAACC+TGG | - | chr6_2:63302424-63302443 | Msa0923260:intron | 50.0% | |
| ATTCACAAACCTGGGCGCAT+TGG | - | chr6_2:63302433-63302452 | Msa0923260:intron | 50.0% | |
| GAAACAATTCCAATGCGCCC+AGG | + | chr6_2:63302445-63302464 | None:intergenic | 50.0% | |
| GCCACGACAGAATGTTGTGT+TGG | - | chr6_2:63302570-63302589 | Msa0923260:intron | 50.0% | |
| CAAGGCCAACAGCAGTTGTT+TGG | + | chr6_2:63302997-63303016 | None:intergenic | 50.0% | |
| ! | CAAACAACTGCTGTTGGCCT+TGG | - | chr6_2:63302995-63303014 | Msa0923260:intron | 50.0% |
| ! | CCACACATGTGGATTGTCCA+AGG | + | chr6_2:63303015-63303034 | None:intergenic | 50.0% |
| CCTTGGACAATCCACATGTG+TGG | - | chr6_2:63303012-63303031 | Msa0923260:intron | 50.0% | |
| CAATCCACATGTGTGGGCAT+TGG | - | chr6_2:63303019-63303038 | Msa0923260:intron | 50.0% | |
| ATTGGAGGAGACCCCTTCAA+TGG | - | chr6_2:63303037-63303056 | Msa0923260:intron | 50.0% | |
| GATAGGAGGAACTGCAGAAG+AGG | - | chr6_2:63303304-63303323 | Msa0923260:intron | 50.0% | |
| GGACGCTGCTGCTCTAATTA+AGG | - | chr6_2:63303325-63303344 | Msa0923260:intron | 50.0% | |
| !! | AGTTCTGGGTTTGCTGGTAG+TGG | - | chr6_2:63303669-63303688 | Msa0923260:intron | 50.0% |
| !! | GTTCTGGGTTTGCTGGTAGT+GGG | - | chr6_2:63303670-63303689 | Msa0923260:intron | 50.0% |
| !! | TTCTGGGTTTGCTGGTAGTG+GGG | - | chr6_2:63303671-63303690 | Msa0923260:intron | 50.0% |
| !! | GTTTGCTGGTAGTGGGGTTA+TGG | - | chr6_2:63303677-63303696 | Msa0923260:intron | 50.0% |
| TGTGACTCCAGCTTCCCTAA+GGG | + | chr6_2:63304728-63304747 | None:intergenic | 50.0% | |
| GTGGAGTCCCCAGCTAAAAT+TGG | - | chr6_2:63304751-63304770 | Msa0923260:five_prime_UTR | 50.0% | |
| !!! | GGCAGCTCCAATTTTAGCTG+GGG | + | chr6_2:63304761-63304780 | None:intergenic | 50.0% |
| ! | TCAGTCCAGAAAGGAGGCAC+AGG | - | chr6_2:63300467-63300486 | Msa0923260:three_prime_UTR | 55.0% |
| ! | CAGTCCAGAAAGGAGGCACA+GGG | - | chr6_2:63300468-63300487 | Msa0923260:exon | 55.0% |
| GAAACCCTGTGCCTCCTTTC+TGG | + | chr6_2:63300475-63300494 | None:intergenic | 55.0% | |
| AAGGGGTGGTTGAGAAGCTG+CGG | + | chr6_2:63300626-63300645 | None:intergenic | 55.0% | |
| ! | TTTTGTCGACGAACACCGCG+GGG | + | chr6_2:63300650-63300669 | None:intergenic | 55.0% |
| ! | CTTTTGTCGACGAACACCGC+GGG | + | chr6_2:63300651-63300670 | None:intergenic | 55.0% |
| ! | GCTTTTGTCGACGAACACCG+CGG | + | chr6_2:63300652-63300671 | None:intergenic | 55.0% |
| AGCACACGCGTGATCTGTCA+AGG | - | chr6_2:63300669-63300688 | Msa0923260:intron | 55.0% | |
| !! | GGCGGTGTTACTCCGAAGAA+AGG | - | chr6_2:63300756-63300775 | Msa0923260:intron | 55.0% |
| TAGGGTTGGGGTGACTACGA+TGG | - | chr6_2:63301390-63301409 | Msa0923260:intron | 55.0% | |
| TGCCCTGGTATCATCAAGCC+CGG | - | chr6_2:63302379-63302398 | Msa0923260:intron | 55.0% | |
| !! | TCCACATGTGTGGGCATTGG+AGG | - | chr6_2:63303022-63303041 | Msa0923260:intron | 55.0% |
| TCCTCCAATGCCCACACATG+TGG | + | chr6_2:63303026-63303045 | None:intergenic | 55.0% | |
| TGTGCAGCTATTGTGTCGGG+TGG | - | chr6_2:63304673-63304692 | Msa0923260:CDS | 55.0% | |
| AGCTATTGTGTCGGGTGGCA+AGG | - | chr6_2:63304678-63304697 | Msa0923260:CDS | 55.0% | |
| GCTATTGTGTCGGGTGGCAA+GGG | - | chr6_2:63304679-63304698 | Msa0923260:CDS | 55.0% | |
| ATCAGCACCCTTAGGGAAGC+TGG | - | chr6_2:63304718-63304737 | Msa0923260:exon | 55.0% | |
| CTGTGACTCCAGCTTCCCTA+AGG | + | chr6_2:63304729-63304748 | None:intergenic | 55.0% | |
| GGAAGCTGGAGTCACAGTTG+TGG | - | chr6_2:63304732-63304751 | Msa0923260:exon | 55.0% | |
| TGAGAAGCTGCGGCGGTTGT+TGG | + | chr6_2:63300616-63300635 | None:intergenic | 60.0% | |
| TTTGTCGACGAACACCGCGG+GGG | + | chr6_2:63300649-63300668 | None:intergenic | 60.0% | |
| GCAGCAGCAGCAAAAGGAGG+AGG | + | chr6_2:63300870-63300889 | None:intergenic | 60.0% | |
| GGAAGCGGTTGAAGCGGAGT+TGG | - | chr6_2:63300896-63300915 | Msa0923260:intron | 60.0% | |
| GCCCTGGTATCATCAAGCCC+GGG | - | chr6_2:63302380-63302399 | Msa0923260:intron | 60.0% | |
| ! | CCCCGGGCTTGATGATACCA+GGG | + | chr6_2:63302384-63302403 | None:intergenic | 60.0% |
| CCCTGGTATCATCAAGCCCG+GGG | - | chr6_2:63302381-63302400 | Msa0923260:intron | 60.0% | |
| ! | TCCCCGGGCTTGATGATACC+AGG | + | chr6_2:63302385-63302404 | None:intergenic | 60.0% |
| GCTGGATTAACTGCTCCCCC+TGG | - | chr6_2:63303986-63304005 | Msa0923260:intron | 60.0% | |
| CTCCAGCGTGTCCCATACGA+CGG | + | chr6_2:63304012-63304031 | None:intergenic | 60.0% | |
| GAAGCTGCGGCGGTTGTTGG+AGG | + | chr6_2:63300613-63300632 | None:intergenic | 65.0% | |
| GGGTGGTTGAGAAGCTGCGG+CGG | + | chr6_2:63300623-63300642 | None:intergenic | 65.0% | |
| TGTCCCATACGACGGCCAGG+GGG | + | chr6_2:63304004-63304023 | None:intergenic | 65.0% | |
| GTGTCCCATACGACGGCCAG+GGG | + | chr6_2:63304005-63304024 | None:intergenic | 65.0% | |
| CGTGTCCCATACGACGGCCA+GGG | + | chr6_2:63304006-63304025 | None:intergenic | 65.0% | |
| CGTCGTATGGGACACGCTGG+AGG | - | chr6_2:63304010-63304029 | Msa0923260:intron | 65.0% | |
| CTCAACCACCCCTTCCCCCG+CGG | - | chr6_2:63300632-63300651 | Msa0923260:intron | 70.0% | |
| GACGAACACCGCGGGGGAAG+GGG | + | chr6_2:63300643-63300662 | None:intergenic | 70.0% | |
| CGACGAACACCGCGGGGGAA+GGG | + | chr6_2:63300644-63300663 | None:intergenic | 70.0% | |
| TCGACGAACACCGCGGGGGA+AGG | + | chr6_2:63300645-63300664 | None:intergenic | 70.0% | |
| TGCTCCCCCTGGCCGTCGTA+TGG | - | chr6_2:63303997-63304016 | Msa0923260:intron | 70.0% | |
| GCTCCCCCTGGCCGTCGTAT+GGG | - | chr6_2:63303998-63304017 | Msa0923260:intron | 70.0% | |
| GCGTGTCCCATACGACGGCC+AGG | + | chr6_2:63304007-63304026 | None:intergenic | 70.0% | |
| GGCCGTCGTATGGGACACGC+TGG | - | chr6_2:63304007-63304026 | Msa0923260:intron | 70.0% | |
| GAACACCGCGGGGGAAGGGG+TGG | + | chr6_2:63300640-63300659 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 63300461 | 63304845 | 63300461 | ID=Msa0923260;Name=Msa0923260 |
| chr6_2 | mRNA | 63300461 | 63304845 | 63300461 | ID=Msa0923260-mRNA-1;Parent=Msa0923260;Name=Msa0923260-mRNA-1;_AED=0.08;_eAED=0.08;_QI=109|0.57|0.75|0.75|1|1|8|26|361 |
| chr6_2 | exon | 63300461 | 63300626 | 63300461 | ID=Msa0923260-mRNA-1:exon:9873;Parent=Msa0923260-mRNA-1 |
| chr6_2 | exon | 63301275 | 63301356 | 63301275 | ID=Msa0923260-mRNA-1:exon:9872;Parent=Msa0923260-mRNA-1 |
| chr6_2 | exon | 63301596 | 63301662 | 63301596 | ID=Msa0923260-mRNA-1:exon:9871;Parent=Msa0923260-mRNA-1 |
| chr6_2 | exon | 63301806 | 63301852 | 63301806 | ID=Msa0923260-mRNA-1:exon:9870;Parent=Msa0923260-mRNA-1 |
| chr6_2 | exon | 63301960 | 63302021 | 63301960 | ID=Msa0923260-mRNA-1:exon:9869;Parent=Msa0923260-mRNA-1 |
| chr6_2 | exon | 63302194 | 63302317 | 63302194 | ID=Msa0923260-mRNA-1:exon:9868;Parent=Msa0923260-mRNA-1 |
| chr6_2 | exon | 63302814 | 63302984 | 63302814 | ID=Msa0923260-mRNA-1:exon:9867;Parent=Msa0923260-mRNA-1 |
| chr6_2 | exon | 63304344 | 63304845 | 63304344 | ID=Msa0923260-mRNA-1:exon:9866;Parent=Msa0923260-mRNA-1 |
| chr6_2 | five_prime_UTR | 63304737 | 63304845 | 63304737 | ID=Msa0923260-mRNA-1:five_prime_utr;Parent=Msa0923260-mRNA-1 |
| chr6_2 | CDS | 63304344 | 63304736 | 63304344 | ID=Msa0923260-mRNA-1:cds;Parent=Msa0923260-mRNA-1 |
| chr6_2 | CDS | 63302814 | 63302984 | 63302814 | ID=Msa0923260-mRNA-1:cds;Parent=Msa0923260-mRNA-1 |
| chr6_2 | CDS | 63302194 | 63302317 | 63302194 | ID=Msa0923260-mRNA-1:cds;Parent=Msa0923260-mRNA-1 |
| chr6_2 | CDS | 63301960 | 63302021 | 63301960 | ID=Msa0923260-mRNA-1:cds;Parent=Msa0923260-mRNA-1 |
| chr6_2 | CDS | 63301806 | 63301852 | 63301806 | ID=Msa0923260-mRNA-1:cds;Parent=Msa0923260-mRNA-1 |
| chr6_2 | CDS | 63301596 | 63301662 | 63301596 | ID=Msa0923260-mRNA-1:cds;Parent=Msa0923260-mRNA-1 |
| chr6_2 | CDS | 63301275 | 63301356 | 63301275 | ID=Msa0923260-mRNA-1:cds;Parent=Msa0923260-mRNA-1 |
| chr6_2 | CDS | 63300487 | 63300626 | 63300487 | ID=Msa0923260-mRNA-1:cds;Parent=Msa0923260-mRNA-1 |
| chr6_2 | three_prime_UTR | 63300461 | 63300486 | 63300461 | ID=Msa0923260-mRNA-1:three_prime_utr;Parent=Msa0923260-mRNA-1 |
| Gene Sequence |
| Protein sequence |
