AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1221570

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1221570 MtrunA17_Chr4g0073131 95.652 184 5 3 1 183 1 182 1.07e-98 283
Msa1221570 MtrunA17_Chr3g0117821 33.099 142 82 4 29 159 1 140 6.02e-17 73.9
Msa1221570 MtrunA17_Chr4g0030831 31.757 148 76 6 25 149 12 157 1.50e-14 68.2
Msa1221570 MtrunA17_Chr6g0451051 32.432 148 87 6 31 177 1 136 2.77e-14 67.0
Msa1221570 MtrunA17_Chr3g0143301 36.207 116 67 4 33 147 5 114 2.77e-13 63.5
Msa1221570 MtrunA17_Chr2g0325141 32.653 147 81 5 24 156 1 143 4.13e-13 63.5
Msa1221570 MtrunA17_Chr8g0336881 34.307 137 72 4 26 149 19 150 5.59e-13 65.9
Msa1221570 MtrunA17_Chr6g0451041 48.214 56 29 0 98 153 12 67 7.66e-13 61.6
Msa1221570 MtrunA17_Chr2g0300331 31.148 122 73 3 39 149 93 214 1.31e-12 63.9
Msa1221570 MtrunA17_Chr7g0246761 34.667 75 48 1 81 154 66 140 1.43e-12 63.2
Msa1221570 MtrunA17_Chr2g0307411 35.772 123 68 4 36 153 33 149 3.86e-12 62.0
Msa1221570 MtrunA17_Chr5g0426871 30.469 128 72 3 31 146 57 179 4.38e-12 63.5
Msa1221570 MtrunA17_Chr3g0118071 40.845 71 40 1 84 152 82 152 6.74e-12 61.6
Msa1221570 MtrunA17_Chr4g0059281 29.936 157 93 5 26 165 40 196 8.99e-12 62.4
Msa1221570 MtrunA17_Chr4g0060981 42.424 66 37 1 84 149 155 219 1.11e-11 61.2
Msa1221570 MtrunA17_Chr5g0426881 28.369 141 88 3 31 163 67 202 1.18e-11 62.4
Msa1221570 MtrunA17_Chr1g0157091 33.043 115 70 3 33 146 5 113 1.28e-11 59.3
Msa1221570 MtrunA17_Chr7g0274721 34.568 81 52 1 84 164 74 153 1.44e-11 60.1
Msa1221570 MtrunA17_Chr8g0366521 31.206 141 84 5 29 159 22 159 1.49e-11 61.6
Msa1221570 MtrunA17_Chr7g0244851 35.065 77 50 0 82 158 85 161 1.63e-11 60.1
Msa1221570 MtrunA17_Chr8g0370171 30.579 121 78 3 34 148 22 142 1.93e-11 60.5
Msa1221570 MtrunA17_Chr5g0433861 31.613 155 95 5 3 151 4 153 2.21e-11 61.2
Msa1221570 MtrunA17_Chr1g0198201 26.241 141 100 1 21 157 1 141 2.63e-11 60.1
Msa1221570 MtrunA17_Chr4g0067591 41.772 79 42 2 84 162 86 160 3.11e-11 60.5
Msa1221570 MtrunA17_Chr7g0261091 29.932 147 83 5 22 154 10 150 3.30e-11 60.8
Msa1221570 MtrunA17_Chr8g0366561 31.288 163 75 8 11 153 47 192 4.26e-11 60.5
Msa1221570 MtrunA17_Chr4g0013561 34.940 83 54 0 74 156 80 162 4.31e-11 59.7
Msa1221570 MtrunA17_Chr6g0451031 41.667 72 39 2 83 153 49 118 4.47e-11 57.8
Msa1221570 MtrunA17_Chr2g0295571 39.394 99 57 2 84 179 99 197 4.48e-11 60.1
Msa1221570 MtrunA17_Chr8g0381731 36.250 80 51 0 84 163 154 233 4.58e-11 60.1
Msa1221570 MtrunA17_Chr7g0274741 38.806 67 38 1 84 147 76 142 5.05e-11 58.9
Msa1221570 MtrunA17_Chr2g0297011 40.000 80 48 0 82 161 80 159 5.99e-11 58.2
Msa1221570 MtrunA17_Chr5g0406031 30.702 114 58 2 54 146 118 231 6.13e-11 59.3
Msa1221570 MtrunA17_Chr5g0444141 46.939 49 26 0 101 149 217 265 6.22e-11 59.7
Msa1221570 MtrunA17_Chr3g0105441 40.278 72 42 1 99 170 127 197 6.32e-11 59.7
Msa1221570 MtrunA17_Chr3g0132491 32.283 127 67 5 30 146 61 178 7.22e-11 60.1
Msa1221570 MtrunA17_Chr7g0248841 27.619 105 66 3 52 146 42 146 7.48e-11 57.8
Msa1221570 MtrunA17_Chr6g0486651 30.645 124 77 2 42 156 48 171 8.73e-11 59.7
Msa1221570 MtrunA17_Chr2g0317671 48.889 45 23 0 102 146 157 201 8.93e-11 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1221570 AT2G18670.1 40.252 159 82 3 16 173 24 170 2.08e-32 115
Msa1221570 AT4G30370.1 39.231 130 78 1 20 149 32 160 1.10e-25 97.4
Msa1221570 AT2G17450.1 30.872 149 84 6 15 152 13 153 2.17e-14 68.2
Msa1221570 AT2G42360.1 33.333 150 93 4 17 160 20 168 2.51e-14 68.9
Msa1221570 AT4G09100.1 31.707 123 65 4 39 149 15 130 6.30e-14 65.9
Msa1221570 AT3G10910.1 26.437 174 110 3 4 165 7 174 1.17e-13 66.2
Msa1221570 AT3G20395.1 41.096 73 41 1 84 156 153 223 5.65e-13 65.1
Msa1221570 AT2G27940.1 35.227 88 49 2 84 164 121 207 1.31e-12 64.3
Msa1221570 AT3G62690.1 41.333 75 43 1 81 155 90 163 2.16e-12 63.9
Msa1221570 AT4G10150.1 27.152 151 98 2 8 146 3 153 2.60e-12 63.5
Msa1221570 AT5G42200.1 30.303 132 77 3 29 152 28 152 2.92e-12 62.0
Msa1221570 AT3G61460.1 31.973 147 82 4 42 178 23 161 2.96e-12 62.4
Msa1221570 AT5G01880.1 34.091 88 56 1 61 146 60 147 5.38e-12 61.2
Msa1221570 AT5G05280.1 44.828 58 32 0 102 159 111 168 8.31e-12 61.2
Msa1221570 AT5G27420.1 28.049 164 104 4 9 164 26 183 9.18e-12 62.8
Msa1221570 AT4G10160.1 35.443 79 51 0 68 146 61 139 2.17e-11 60.8
Msa1221570 AT3G05200.1 28.485 165 100 5 6 162 30 184 2.72e-11 61.6
Msa1221570 AT1G63840.1 34.884 129 67 6 32 147 10 134 4.76e-11 58.9
Msa1221570 AT5G66070.5 33.036 112 54 2 54 146 109 218 7.45e-11 59.3
Msa1221570 AT5G66070.1 33.036 112 54 2 54 146 109 218 7.45e-11 59.3
Msa1221570 AT2G17730.1 31.818 132 65 3 43 149 110 241 7.78e-11 59.7

Find 78 sgRNAs with CRISPR-Local

Find 81 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGAAGGTTCTTCACGATTT+TGG 0.131959 8_1:+85200581 Msa1221570:CDS
GGAAAAGGGAGAGGAGATTA+GGG 0.247255 8_1:-85200144 None:intergenic
AGGAAAAGGGAGAGGAGATT+AGG 0.279449 8_1:-85200145 None:intergenic
AGGAGATTAGGGTTTGGTTT+TGG 0.298382 8_1:-85200133 None:intergenic
TTCAGGATCGCCATGGTGTT+GGG 0.309331 8_1:-85200104 None:intergenic
TTCTCGTTGTGCTGTTTGTT+TGG 0.334977 8_1:+85200393 Msa1221570:CDS
TATTGATACCTGGCTTCTTA+AGG 0.367630 8_1:+85200483 Msa1221570:CDS
TCCCTCTTCTTTCTCTTCCT+CGG 0.367925 8_1:+85200196 Msa1221570:CDS
CGCTCAACCTTCACAAGGTT+CGG 0.370509 8_1:+85200546 Msa1221570:CDS
CCTTTGGTGATCCGGAAGTT+GGG 0.379531 8_1:-85200352 None:intergenic
TGATGATGGGTTTGAGGAAA+AGG 0.391533 8_1:-85200159 None:intergenic
TCACAAGCTATTATTACAAA+AGG 0.402643 8_1:-85200633 None:intergenic
TCAACAACCTCCCCAACTTC+CGG 0.405396 8_1:+85200341 Msa1221570:CDS
ACAAACAGCACAACGAGAAT+CGG 0.409644 8_1:-85200389 None:intergenic
AGGGAGAGGAGATTAGGGTT+TGG 0.413011 8_1:-85200139 None:intergenic
GACGGAAACGGAGGCGGTGG+AGG 0.416739 8_1:-85200264 None:intergenic
ACCTTTGGTGATCCGGAAGT+TGG 0.426029 8_1:-85200353 None:intergenic
AAACGGAACCTTTGGTGATC+CGG 0.428137 8_1:-85200360 None:intergenic
TAGGACGGAAACGGAGGCGG+TGG 0.438475 8_1:-85200267 None:intergenic
CGTTGTGCTGTTTGTTTGGA+CGG 0.442179 8_1:+85200397 Msa1221570:CDS
GAAGAGGTTGAGGAGGAGAA+AGG 0.454979 8_1:-85200227 None:intergenic
GGGTTCAGAAACGGAACCTT+TGG 0.469591 8_1:-85200368 None:intergenic
ACGGAGGCGGTGGAGGGCGC+CGG 0.472988 8_1:-85200257 None:intergenic
CGGCTAAGAGGAAGAGGTTG+AGG 0.481229 8_1:-85200237 None:intergenic
ACGAGAATCGGGTTCAGAAA+CGG 0.482086 8_1:-85200377 None:intergenic
GTTCAGGATCGCCATGGTGT+TGG 0.482441 8_1:-85200105 None:intergenic
GAAGCATGATGATGGGTTTG+AGG 0.492199 8_1:-85200165 None:intergenic
ACCTTGTGAAGGTTGAGCGT+TGG 0.493031 8_1:-85200542 None:intergenic
TGTGAGGAGAAGCATGATGA+TGG 0.495135 8_1:-85200173 None:intergenic
CAAACAGCACAACGAGAATC+GGG 0.497987 8_1:-85200388 None:intergenic
GGTGGAGGGCGCCGGCTAAG+AGG 0.499890 8_1:-85200249 None:intergenic
GGTTGAGCGTTGGACCGAAC+CGG 0.501540 8_1:-85200532 None:intergenic
CTCAACCTCTTCCTCTTAGC+CGG 0.507892 8_1:+85200238 Msa1221570:CDS
GATGATGGGTTTGAGGAAAA+GGG 0.516706 8_1:-85200158 None:intergenic
AGAGAAAGAAGAGGGATGTG+AGG 0.517778 8_1:-85200189 None:intergenic
CACAAGCTATTATTACAAAA+GGG 0.519132 8_1:-85200632 None:intergenic
ATCGGAGATGTATTGATACC+TGG 0.519657 8_1:+85200473 Msa1221570:CDS
ACGGAAACGGAGGCGGTGGA+GGG 0.523526 8_1:-85200263 None:intergenic
TGGGTTTGAGGAAAAGGGAG+AGG 0.528031 8_1:-85200153 None:intergenic
CTTTGGTGATCCGGAAGTTG+GGG 0.528986 8_1:-85200351 None:intergenic
CTACTTGCCGTACACCGGTT+CGG 0.530310 8_1:+85200518 Msa1221570:CDS
GAGTAGGACGGAAACGGAGG+CGG 0.531377 8_1:-85200270 None:intergenic
GGGCGCCGGCTAAGAGGAAG+AGG 0.535078 8_1:-85200243 None:intergenic
GGAGAAAGGCGGCGAAACCG+AGG 0.539177 8_1:-85200213 None:intergenic
GGTGAGGGATTGAAGACGGC+GGG 0.544512 8_1:-85200296 None:intergenic
TGAAGACGGCGGGTTGGAGT+AGG 0.545882 8_1:-85200286 None:intergenic
CGTTGGACCGAACCGGTGTA+CGG 0.546340 8_1:-85200525 None:intergenic
AGGGATTGAAGACGGCGGGT+TGG 0.557895 8_1:-85200292 None:intergenic
GGGAGGTTGTTGATTTCGCG+AGG 0.564332 8_1:-85200331 None:intergenic
AGGGAGGAAAGCGTCGGTGA+GGG 0.565102 8_1:-85200311 None:intergenic
CCATGGTGTTGGGGATGAGA+AGG 0.567157 8_1:-85200094 None:intergenic
GGGTTGGAGTAGGACGGAAA+CGG 0.569430 8_1:-85200276 None:intergenic
TCGGTTGTAGAACAAGATGA+AGG 0.570752 8_1:+85200565 Msa1221570:CDS
CGAACCGGTGTACGGCAAGT+AGG 0.574174 8_1:-85200517 None:intergenic
CCCAACTTCCGGATCACCAA+AGG 0.581918 8_1:+85200352 Msa1221570:CDS
CGTGGCAACCTTAAGAAGCC+AGG 0.587413 8_1:-85200491 None:intergenic
TGGTGATCCGGAAGTTGGGG+AGG 0.590502 8_1:-85200348 None:intergenic
GGTTGTTGATTTCGCGAGGG+AGG 0.591963 8_1:-85200327 None:intergenic
CTAAGAGGAAGAGGTTGAGG+AGG 0.593800 8_1:-85200234 None:intergenic
GTGTCCTACTTGCCGTACAC+CGG 0.602666 8_1:+85200513 Msa1221570:CDS
GTTGTTGTTCAGGATCGCCA+TGG 0.605538 8_1:-85200111 None:intergenic
GTGAGGAGAAGCATGATGAT+GGG 0.607789 8_1:-85200172 None:intergenic
ACCGAGGAAGAGAAAGAAGA+GGG 0.608693 8_1:-85200197 None:intergenic
AACCGAGGAAGAGAAAGAAG+AGG 0.612058 8_1:-85200198 None:intergenic
TCAGGATCGCCATGGTGTTG+GGG 0.615546 8_1:-85200103 None:intergenic
CGTCGGTGAGGGATTGAAGA+CGG 0.626086 8_1:-85200300 None:intergenic
GTGTTGGGGATGAGAAGGCA+TGG 0.640252 8_1:-85200089 None:intergenic
GAGGGAGGAAAGCGTCGGTG+AGG 0.640961 8_1:-85200312 None:intergenic
TCTACAACCGAACCTTGTGA+AGG 0.648198 8_1:-85200553 None:intergenic
TTGGAGTAGGACGGAAACGG+AGG 0.653534 8_1:-85200273 None:intergenic
GAGGTTGAGGAGGAGAAAGG+CGG 0.653553 8_1:-85200224 None:intergenic
CCTTCTCATCCCCAACACCA+TGG 0.654904 8_1:+85200094 Msa1221570:CDS
GGAGGTTGTTGATTTCGCGA+GGG 0.655842 8_1:-85200330 None:intergenic
CGGTGAGGGATTGAAGACGG+CGG 0.657153 8_1:-85200297 None:intergenic
TTCGCGAGGGAGGAAAGCGT+CGG 0.671242 8_1:-85200317 None:intergenic
TGTAGAAATCTCGCTGCCTG+TGG 0.675543 8_1:+85200439 Msa1221570:CDS
GACGGCGGGTTGGAGTAGGA+CGG 0.677108 8_1:-85200282 None:intergenic
TCCAACGCTCAACCTTCACA+AGG 0.693145 8_1:+85200541 Msa1221570:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTGGTTTTGGTTGTTGTTC+AGG - chr8_1:85200124-85200143 None:intergenic 35.0%
TATTGATACCTGGCTTCTTA+AGG + chr8_1:85200483-85200502 Msa1221570:CDS 35.0%
! ATGAAGGTTCTTCACGATTT+TGG + chr8_1:85200581-85200600 Msa1221570:CDS 35.0%
!! AGGAGATTAGGGTTTGGTTT+TGG - chr8_1:85200136-85200155 None:intergenic 40.0%
!! GATGATGGGTTTGAGGAAAA+GGG - chr8_1:85200161-85200180 None:intergenic 40.0%
!! TGATGATGGGTTTGAGGAAA+AGG - chr8_1:85200162-85200181 None:intergenic 40.0%
ACAAACAGCACAACGAGAAT+CGG - chr8_1:85200392-85200411 None:intergenic 40.0%
!! TTCTCGTTGTGCTGTTTGTT+TGG + chr8_1:85200393-85200412 Msa1221570:CDS 40.0%
! TGTTTGGACGGTTTTCGTAA+TGG + chr8_1:85200409-85200428 Msa1221570:CDS 40.0%
! ACGGTTTTCGTAATGGTCAA+TGG + chr8_1:85200416-85200435 Msa1221570:CDS 40.0%
! CCTGTGGTCATGTTTTTCAT+CGG + chr8_1:85200455-85200474 Msa1221570:CDS 40.0%
! ATCGGAGATGTATTGATACC+TGG + chr8_1:85200473-85200492 Msa1221570:CDS 40.0%
TCGGTTGTAGAACAAGATGA+AGG + chr8_1:85200565-85200584 Msa1221570:CDS 40.0%
GGAAAAGGGAGAGGAGATTA+GGG - chr8_1:85200147-85200166 None:intergenic 45.0%
AGGAAAAGGGAGAGGAGATT+AGG - chr8_1:85200148-85200167 None:intergenic 45.0%
!! GAAGCATGATGATGGGTTTG+AGG - chr8_1:85200168-85200187 None:intergenic 45.0%
! GTGAGGAGAAGCATGATGAT+GGG - chr8_1:85200175-85200194 None:intergenic 45.0%
! TGTGAGGAGAAGCATGATGA+TGG - chr8_1:85200176-85200195 None:intergenic 45.0%
AGAGAAAGAAGAGGGATGTG+AGG - chr8_1:85200192-85200211 None:intergenic 45.0%
TCCCTCTTCTTTCTCTTCCT+CGG + chr8_1:85200196-85200215 Msa1221570:CDS 45.0%
ACCGAGGAAGAGAAAGAAGA+GGG - chr8_1:85200200-85200219 None:intergenic 45.0%
AACCGAGGAAGAGAAAGAAG+AGG - chr8_1:85200201-85200220 None:intergenic 45.0%
! AAACGGAACCTTTGGTGATC+CGG - chr8_1:85200363-85200382 None:intergenic 45.0%
ACGAGAATCGGGTTCAGAAA+CGG - chr8_1:85200380-85200399 None:intergenic 45.0%
CAAACAGCACAACGAGAATC+GGG - chr8_1:85200391-85200410 None:intergenic 45.0%
!! CGTTGTGCTGTTTGTTTGGA+CGG + chr8_1:85200397-85200416 Msa1221570:CDS 45.0%
CCGATGAAAAACATGACCAC+AGG - chr8_1:85200458-85200477 None:intergenic 45.0%
TCTACAACCGAACCTTGTGA+AGG - chr8_1:85200556-85200575 None:intergenic 45.0%
TTCAGGATCGCCATGGTGTT+GGG - chr8_1:85200107-85200126 None:intergenic 50.0%
! GTTGTTGTTCAGGATCGCCA+TGG - chr8_1:85200114-85200133 None:intergenic 50.0%
AGGGAGAGGAGATTAGGGTT+TGG - chr8_1:85200142-85200161 None:intergenic 50.0%
TGGGTTTGAGGAAAAGGGAG+AGG - chr8_1:85200156-85200175 None:intergenic 50.0%
GAAGAGGTTGAGGAGGAGAA+AGG - chr8_1:85200230-85200249 None:intergenic 50.0%
CTAAGAGGAAGAGGTTGAGG+AGG - chr8_1:85200237-85200256 None:intergenic 50.0%
CTCAACCTCTTCCTCTTAGC+CGG + chr8_1:85200238-85200257 Msa1221570:CDS 50.0%
!! GGAGGTTGTTGATTTCGCGA+GGG - chr8_1:85200333-85200352 None:intergenic 50.0%
TCAACAACCTCCCCAACTTC+CGG + chr8_1:85200341-85200360 Msa1221570:CDS 50.0%
! CTTTGGTGATCCGGAAGTTG+GGG - chr8_1:85200354-85200373 None:intergenic 50.0%
! CCTTTGGTGATCCGGAAGTT+GGG - chr8_1:85200355-85200374 None:intergenic 50.0%
! ACCTTTGGTGATCCGGAAGT+TGG - chr8_1:85200356-85200375 None:intergenic 50.0%
GGGTTCAGAAACGGAACCTT+TGG - chr8_1:85200371-85200390 None:intergenic 50.0%
TGTAGAAATCTCGCTGCCTG+TGG + chr8_1:85200439-85200458 Msa1221570:CDS 50.0%
TCCAACGCTCAACCTTCACA+AGG + chr8_1:85200541-85200560 Msa1221570:CDS 50.0%
ACCTTGTGAAGGTTGAGCGT+TGG - chr8_1:85200545-85200564 None:intergenic 50.0%
CGCTCAACCTTCACAAGGTT+CGG + chr8_1:85200546-85200565 Msa1221570:CDS 50.0%
! CCATGGTGTTGGGGATGAGA+AGG - chr8_1:85200097-85200116 None:intergenic 55.0%
CCTTCTCATCCCCAACACCA+TGG + chr8_1:85200094-85200113 Msa1221570:CDS 55.0%
! TCAGGATCGCCATGGTGTTG+GGG - chr8_1:85200106-85200125 None:intergenic 55.0%
GTTCAGGATCGCCATGGTGT+TGG - chr8_1:85200108-85200127 None:intergenic 55.0%
GAGGTTGAGGAGGAGAAAGG+CGG - chr8_1:85200227-85200246 None:intergenic 55.0%
CGGCTAAGAGGAAGAGGTTG+AGG - chr8_1:85200240-85200259 None:intergenic 55.0%
TTGGAGTAGGACGGAAACGG+AGG - chr8_1:85200276-85200295 None:intergenic 55.0%
GGGTTGGAGTAGGACGGAAA+CGG - chr8_1:85200279-85200298 None:intergenic 55.0%
CGTCGGTGAGGGATTGAAGA+CGG - chr8_1:85200303-85200322 None:intergenic 55.0%
!! GGTTGTTGATTTCGCGAGGG+AGG - chr8_1:85200330-85200349 None:intergenic 55.0%
!! GGGAGGTTGTTGATTTCGCG+AGG - chr8_1:85200334-85200353 None:intergenic 55.0%
CCCAACTTCCGGATCACCAA+AGG + chr8_1:85200352-85200371 Msa1221570:CDS 55.0%
CGTGGCAACCTTAAGAAGCC+AGG - chr8_1:85200494-85200513 None:intergenic 55.0%
TGTACGGCAAGTAGGACACG+TGG - chr8_1:85200512-85200531 None:intergenic 55.0%
GTGTCCTACTTGCCGTACAC+CGG + chr8_1:85200513-85200532 Msa1221570:CDS 55.0%
! CTACTTGCCGTACACCGGTT+CGG + chr8_1:85200518-85200537 Msa1221570:CDS 55.0%
GAGTAGGACGGAAACGGAGG+CGG - chr8_1:85200273-85200292 None:intergenic 60.0%
!! TGAAGACGGCGGGTTGGAGT+AGG - chr8_1:85200289-85200308 None:intergenic 60.0%
AGGGATTGAAGACGGCGGGT+TGG - chr8_1:85200295-85200314 None:intergenic 60.0%
GGTGAGGGATTGAAGACGGC+GGG - chr8_1:85200299-85200318 None:intergenic 60.0%
CGGTGAGGGATTGAAGACGG+CGG - chr8_1:85200300-85200319 None:intergenic 60.0%
!! AGGGAGGAAAGCGTCGGTGA+GGG - chr8_1:85200314-85200333 None:intergenic 60.0%
! TTCGCGAGGGAGGAAAGCGT+CGG - chr8_1:85200320-85200339 None:intergenic 60.0%
TGGTGATCCGGAAGTTGGGG+AGG - chr8_1:85200351-85200370 None:intergenic 60.0%
CGAACCGGTGTACGGCAAGT+AGG - chr8_1:85200520-85200539 None:intergenic 60.0%
CGTTGGACCGAACCGGTGTA+CGG - chr8_1:85200528-85200547 None:intergenic 60.0%
!! GGTTGAGCGTTGGACCGAAC+CGG - chr8_1:85200535-85200554 None:intergenic 60.0%
GGAGAAAGGCGGCGAAACCG+AGG - chr8_1:85200216-85200235 None:intergenic 65.0%
ACGGAAACGGAGGCGGTGGA+GGG - chr8_1:85200266-85200285 None:intergenic 65.0%
TAGGACGGAAACGGAGGCGG+TGG - chr8_1:85200270-85200289 None:intergenic 65.0%
!! GACGGCGGGTTGGAGTAGGA+CGG - chr8_1:85200285-85200304 None:intergenic 65.0%
!! GAGGGAGGAAAGCGTCGGTG+AGG - chr8_1:85200315-85200334 None:intergenic 65.0%
!! GGGCGCCGGCTAAGAGGAAG+AGG - chr8_1:85200246-85200265 None:intergenic 70.0%
GACGGAAACGGAGGCGGTGG+AGG - chr8_1:85200267-85200286 None:intergenic 70.0%
!! GGTGGAGGGCGCCGGCTAAG+AGG - chr8_1:85200252-85200271 None:intergenic 75.0%
!! ACGGAGGCGGTGGAGGGCGC+CGG - chr8_1:85200260-85200279 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 85200091 85200642 85200091 ID=Msa1221570;Name=Msa1221570
chr8_1 mRNA 85200091 85200642 85200091 ID=Msa1221570-mRNA-1;Parent=Msa1221570;Name=Msa1221570-mRNA-1;_AED=0.37;_eAED=0.37;_QI=0|-1|0|1|-1|1|1|0|183
chr8_1 exon 85200091 85200642 85200091 ID=Msa1221570-mRNA-1:exon:30684;Parent=Msa1221570-mRNA-1
chr8_1 CDS 85200091 85200642 85200091 ID=Msa1221570-mRNA-1:cds;Parent=Msa1221570-mRNA-1
Gene Sequence

>Msa1221570

ATGCCTTCTCATCCCCAACACCATGGCGATCCTGAACAACAACCAAAACCAAACCCTAATCTCCTCTCCCTTTTCCTCAAACCCATCATCATGCTTCTCCTCACATCCCTCTTCTTTCTCTTCCTCGGTTTCGCCGCCTTTCTCCTCCTCAACCTCTTCCTCTTAGCCGGCGCCCTCCACCGCCTCCGTTTCCGTCCTACTCCAACCCGCCGTCTTCAATCCCTCACCGACGCTTTCCTCCCTCGCGAAATCAACAACCTCCCCAACTTCCGGATCACCAAAGGTTCCGTTTCTGAACCCGATTCTCGTTGTGCTGTTTGTTTGGACGGTTTTCGTAATGGTCAATGGTGTAGAAATCTCGCTGCCTGTGGTCATGTTTTTCATCGGAGATGTATTGATACCTGGCTTCTTAAGGTTGCCACGTGTCCTACTTGCCGTACACCGGTTCGGTCCAACGCTCAACCTTCACAAGGTTCGGTTGTAGAACAAGATGAAGGTTCTTCACGATTTTGGAATTGCTCTAATAACAACAATCGTTTCACCCTTTTGTAA
Protein sequence

>Msa1221570

MPSHPQHHGDPEQQPKPNPNLLSLFLKPIIMLLLTSLFFLFLGFAAFLLLNLFLLAGALHRLRFRPTPTRRLQSLTDAFLPREINNLPNFRITKGSVSEPDSRCAVCLDGFRNGQWCRNLAACGHVFHRRCIDTWLLKVATCPTCRTPVRSNAQPSQGSVVEQDEGSSRFWNCSNNNNRFTLL*