AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0611180

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0611180 MtrunA17_Chr4g0044601 97.863 702 12 1 1 702 1 699 0.0 1407
Msa0611180 MtrunA17_Chr1g0153211 33.827 742 417 25 1 702 1 708 1.76e-72 249
Msa0611180 MtrunA17_Chr1g0147951 45.455 165 77 3 542 696 308 469 1.81e-38 149
Msa0611180 MtrunA17_Chr3g0138951 44.643 168 79 4 543 699 368 532 6.15e-35 140
Msa0611180 MtrunA17_Chr7g0263911 38.889 216 106 7 492 700 440 636 5.57e-33 135
Msa0611180 MtrunA17_Chr2g0316601 45.185 135 61 3 575 701 388 517 2.90e-32 131
Msa0611180 MtrunA17_Chr1g0181401 49.573 117 55 2 586 701 417 530 7.82e-31 127
Msa0611180 MtrunA17_Chr2g0316591 50.943 106 49 1 596 701 197 299 1.61e-30 122
Msa0611180 MtrunA17_Chr2g0315711 42.982 114 57 1 596 701 217 330 2.85e-26 110
Msa0611180 MtrunA17_Chr6g0483631 48.598 107 54 1 596 701 252 358 1.65e-25 108
Msa0611180 MtrunA17_Chr5g0401961 39.597 149 88 2 553 700 449 596 5.26e-25 110
Msa0611180 MtrunA17_Chr8g0392341 45.299 117 63 1 586 701 236 352 9.84e-25 106
Msa0611180 MtrunA17_Chr3g0086891 36.806 144 81 1 557 700 312 445 2.18e-23 103
Msa0611180 MtrunA17_Chr4g0032561 40.404 99 59 0 603 701 144 242 4.94e-17 81.3
Msa0611180 MtrunA17_Chr3g0124751 42.222 90 50 1 606 695 139 226 1.83e-16 79.7
Msa0611180 MtrunA17_Chr8g0352131 35.354 99 64 0 603 701 144 242 4.38e-16 78.6
Msa0611180 MtrunA17_Chr2g0315681 39.583 96 50 1 588 675 81 176 1.25e-15 75.5
Msa0611180 MtrunA17_Chr1g0211831 41.000 100 57 1 603 702 238 335 1.13e-14 75.9
Msa0611180 MtrunA17_Chr1g0169651 35.238 105 61 2 594 698 629 726 1.42e-11 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0611180 AT4G34040.1 38.843 726 360 23 1 702 1 666 1.62e-106 338
Msa0611180 AT2G15530.5 36.302 741 392 23 1 702 4 703 1.06e-101 327
Msa0611180 AT2G15530.3 36.302 741 392 23 1 702 4 703 1.06e-101 327
Msa0611180 AT2G15530.2 36.302 741 392 23 1 702 4 703 1.06e-101 327
Msa0611180 AT2G15530.1 36.302 741 392 23 1 702 4 703 1.06e-101 327
Msa0611180 AT2G15530.7 36.302 741 392 23 1 702 4 703 1.06e-101 327
Msa0611180 AT2G15530.6 36.167 741 371 25 1 702 4 681 8.28e-99 319
Msa0611180 AT2G15530.4 35.918 735 391 23 1 696 4 697 5.76e-97 317
Msa0611180 AT5G42940.2 31.812 745 400 30 1 700 1 682 1.54e-62 221
Msa0611180 AT5G42940.1 31.812 745 400 30 1 700 1 682 1.54e-62 221
Msa0611180 AT1G45180.2 41.176 340 181 9 372 700 258 589 4.82e-57 204
Msa0611180 AT1G45180.1 41.176 340 181 9 372 700 306 637 8.82e-57 204
Msa0611180 AT1G45180.3 41.176 340 181 9 372 700 306 637 8.82e-57 204
Msa0611180 AT1G45180.4 41.176 340 181 9 372 700 306 637 8.82e-57 204
Msa0611180 AT5G24870.3 45.732 164 78 4 546 699 350 512 2.29e-37 147
Msa0611180 AT5G24870.1 45.732 164 78 4 546 699 350 512 2.29e-37 147
Msa0611180 AT5G24870.2 45.732 164 78 4 546 699 350 512 2.29e-37 147
Msa0611180 AT5G10650.1 47.297 148 67 4 562 699 373 519 2.09e-35 141
Msa0611180 AT5G10650.2 47.297 148 67 4 562 699 373 519 2.09e-35 141
Msa0611180 AT4G31450.1 47.059 153 72 2 559 702 343 495 2.31e-34 137
Msa0611180 AT4G31450.2 47.059 153 72 2 559 702 343 495 2.31e-34 137
Msa0611180 AT1G53190.2 50.000 114 49 2 596 701 375 488 1.43e-30 126
Msa0611180 AT1G53190.1 50.000 114 49 2 596 701 375 488 1.43e-30 126
Msa0611180 AT3G15070.1 48.182 110 53 2 596 701 365 474 2.31e-28 119
Msa0611180 AT3G15070.2 48.182 110 53 2 596 701 365 474 2.31e-28 119
Msa0611180 AT1G73760.1 43.902 123 67 1 577 699 243 363 2.62e-28 117
Msa0611180 AT2G37150.10 42.458 179 96 5 526 700 363 538 9.61e-27 115
Msa0611180 AT2G37150.11 42.458 179 96 5 526 700 363 538 9.61e-27 115
Msa0611180 AT2G37150.9 42.458 179 96 5 526 700 363 538 9.61e-27 115
Msa0611180 AT2G37150.12 42.458 179 96 5 526 700 363 538 9.61e-27 115
Msa0611180 AT2G37150.5 42.458 179 96 5 526 700 363 538 9.61e-27 115
Msa0611180 AT2G37150.4 42.458 179 96 5 526 700 363 538 9.61e-27 115
Msa0611180 AT2G37150.2 42.458 179 96 5 526 700 363 538 9.61e-27 115
Msa0611180 AT2G37150.8 42.458 179 96 5 526 700 363 538 9.61e-27 115
Msa0611180 AT2G37150.7 42.458 179 96 5 526 700 363 538 9.61e-27 115
Msa0611180 AT2G37150.6 42.458 179 96 5 526 700 363 538 9.61e-27 115
Msa0611180 AT2G37150.1 42.458 179 96 5 526 700 363 538 9.61e-27 115
Msa0611180 AT2G37150.14 42.458 179 96 5 526 700 379 554 1.60e-26 115
Msa0611180 AT2G37150.13 42.458 179 96 5 526 700 379 554 1.60e-26 115
Msa0611180 AT2G37150.15 42.458 179 96 5 526 700 379 554 1.60e-26 115
Msa0611180 AT2G37150.3 42.458 179 96 5 526 700 416 591 4.21e-26 114
Msa0611180 AT1G17970.1 42.276 123 68 2 577 699 245 364 7.93e-24 104
Msa0611180 AT5G67120.1 41.111 90 50 1 606 695 181 267 3.36e-17 82.8
Msa0611180 AT5G10650.3 42.593 108 51 4 562 659 373 479 5.99e-16 81.6
Msa0611180 AT3G19910.1 41.489 94 53 1 602 695 237 328 7.01e-16 80.1
Msa0611180 AT3G63530.2 35.354 99 64 0 603 701 145 243 1.27e-15 77.8
Msa0611180 AT3G63530.1 35.354 99 64 0 603 701 145 243 1.27e-15 77.8
Msa0611180 AT5G52140.1 36.634 101 56 1 604 696 175 275 2.45e-15 77.4
Msa0611180 AT1G36950.1 33.654 104 66 2 596 699 24 124 2.47e-14 73.6
Msa0611180 AT3G47180.1 37.363 91 54 2 606 695 115 203 7.27e-13 68.9
Msa0611180 AT4G00070.1 34.043 94 59 2 596 689 88 178 1.20e-12 67.4

Find 220 sgRNAs with CRISPR-Local

Find 401 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAACGAATCCTTGGATTTA+AGG 0.097825 4_2:-59307524 Msa0611180:CDS
CAAGTTCTTCTTTAGCTAAT+TGG 0.143461 4_2:-59307950 Msa0611180:CDS
ACATCCCAGGGTATTAATTT+TGG 0.158723 4_2:-59308155 Msa0611180:CDS
CGCAAAATGCAGTAGATTTC+CGG 0.221239 4_2:-59308448 Msa0611180:CDS
CTGAGCTGATTGAGGGAAAA+AGG 0.221504 4_2:+59307091 None:intergenic
AAGTTCTTCTTTAGCTAATT+GGG 0.226927 4_2:-59307949 Msa0611180:CDS
AAAAGAGAGAGAGTAATTAA+AGG 0.247672 4_2:+59310522 None:intergenic
GGTCCTAATGTGAGCTTTAA+TGG 0.250304 4_2:-59308374 Msa0611180:CDS
GTTAATAACAACGATCCTTT+TGG 0.270646 4_2:-59308074 Msa0611180:CDS
TCCCTTGTACAATCTGAAAA+TGG 0.272688 4_2:-59307858 Msa0611180:CDS
AGGTGATTTGTCACCTTTAG+AGG 0.276118 4_2:-59307790 Msa0611180:CDS
TTTCCGGCTGTCAGATTATA+GGG 0.281834 4_2:-59308432 Msa0611180:CDS
TACAATCTGAAAATGGTTAC+TGG 0.301098 4_2:-59307851 Msa0611180:CDS
TTACATTTATACTGTGATAA+TGG 0.309211 4_2:-59305305 Msa0611180:three_prime_UTR
TCACCCACCCATTTCAATTC+AGG 0.328214 4_2:-59310347 Msa0611180:five_prime_UTR
CCTCTCAATTTAACATCAAC+AGG 0.330426 4_2:-59307603 Msa0611180:CDS
TTTCTTGTATTCTGCTGAAA+TGG 0.334803 4_2:+59307747 None:intergenic
ATTTCCGGCTGTCAGATTAT+AGG 0.345014 4_2:-59308433 Msa0611180:CDS
AAAGAGATCCTGAATTGAAA+TGG 0.348292 4_2:+59310339 None:intergenic
TGGACAGAATCTCGGTTTGC+TGG 0.349741 4_2:-59305603 Msa0611180:CDS
TCTGTTGATCTTAATGTTCC+TGG 0.349757 4_2:-59307819 Msa0611180:CDS
AACTTCCTCTCATCTTAGAT+TGG 0.351737 4_2:-59305395 Msa0611180:three_prime_UTR
GACCAGATTCAGTCCAGAAC+TGG 0.352502 4_2:+59308334 None:intergenic
AAATTGAGAGGTACAGATTC+CGG 0.354926 4_2:+59307615 None:intergenic
AAGCTCTGGGTACATGGCTT+GGG 0.358208 4_2:-59307988 Msa0611180:CDS
TTGCTGATGAAGCACCTATT+TGG 0.361321 4_2:+59308009 None:intergenic
TGCATCATGTTAACAATTGT+TGG 0.362768 4_2:+59308524 None:intergenic
GGCCATTCCTCCTCTACTTC+CGG 0.363757 4_2:-59307051 Msa0611180:CDS
CCCAAGTAATTGCCTTTCCT+CGG 0.375762 4_2:+59308229 None:intergenic
TTCCAATGCATTTCCTTCAA+TGG 0.376501 4_2:-59307706 Msa0611180:CDS
CAGATTCCGGATGATGTAGA+TGG 0.380959 4_2:+59307628 None:intergenic
AGTTCTTCATTCAACCAAAT+AGG 0.383336 4_2:-59308023 Msa0611180:CDS
CAAGGTCAAAGGAGGACTAT+TGG 0.384610 4_2:-59308554 Msa0611180:CDS
ATCTCGGTTTGCTGGATTGT+GGG 0.387032 4_2:-59305595 Msa0611180:CDS
ACCCAGTTCTGGACTGAATC+TGG 0.388706 4_2:-59308336 Msa0611180:CDS
GAAAAGATATGCTTATGCTT+TGG 0.389315 4_2:+59310612 None:intergenic
AGGTTAGCAGCTGGAGCAGC+TGG 0.389981 4_2:-59307504 Msa0611180:CDS
TCCGCAATACTTACCATTGA+AGG 0.391370 4_2:+59307693 None:intergenic
CGCGGGAAAGGTAAAGAAAC+TGG 0.399821 4_2:-59308104 Msa0611180:CDS
AATACCGGTGAACCCAGTTC+TGG 0.405795 4_2:-59308347 Msa0611180:CDS
TCCGCATTGCTAGCAGGACT+TGG 0.414252 4_2:+59306526 None:intergenic
TTTCAGCCATGCCATGATAT+AGG 0.415855 4_2:+59306012 None:intergenic
ATGAACATGCCTGCATCTTC+AGG 0.416304 4_2:-59307294 Msa0611180:CDS
CTTAATGTTCCTGGAAGCTT+AGG 0.416639 4_2:-59307810 Msa0611180:CDS
GGAGCTGGAACCTTGCAAAA+AGG 0.419168 4_2:+59308184 None:intergenic
AATTTGCAAAACAACGGCCT+TGG 0.421383 4_2:-59305516 Msa0611180:CDS
AAGGTCAAAGGAGGACTATT+GGG 0.421479 4_2:-59308553 Msa0611180:CDS
ACTTGGATTACAGGAATTGT+TGG 0.422489 4_2:-59305871 Msa0611180:intron
GACAAATCACCTAAGCTTCC+AGG 0.422851 4_2:+59307801 None:intergenic
GCTATAAGAACTTGAAGATC+TGG 0.424200 4_2:+59307386 None:intergenic
TCTCTCATTTAACGAATCCT+TGG 0.425147 4_2:-59307532 Msa0611180:CDS
TTAAATGTCCAGCTGGGATT+AGG 0.425206 4_2:+59307168 None:intergenic
CAGCCATTAAAGCTCACATT+AGG 0.430620 4_2:+59308371 None:intergenic
GGATGCTCGGTACCATCTCT+TGG 0.437725 4_2:+59307318 None:intergenic
TCTTCAAGTTCTTATAGCTC+AGG 0.441108 4_2:-59307381 Msa0611180:CDS
CCCGAGGAAAGGCAATTACT+TGG 0.442769 4_2:-59308230 Msa0611180:CDS
GATAGAGAGAAGACATCAAT+TGG 0.443897 4_2:-59308047 Msa0611180:CDS
GGTGCTTCATCAGCAAGCTC+TGG 0.446881 4_2:-59308002 Msa0611180:CDS
GCATCATGTTAACAATTGTT+GGG 0.448389 4_2:+59308525 None:intergenic
ACAGGAATTGTTGGCATTGG+AGG 0.449223 4_2:-59305862 Msa0611180:intron
AGTTCTATGCAACTGTGTAC+TGG 0.450835 4_2:-59307894 Msa0611180:CDS
CAAGCTCTGGGTACATGGCT+TGG 0.453447 4_2:-59307989 Msa0611180:CDS
ATCAGCAAGCTCTGGGTACA+TGG 0.454476 4_2:-59307994 Msa0611180:CDS
TCAGCATCTAGTACTCATAA+TGG 0.455341 4_2:-59307072 Msa0611180:CDS
TCCGTCATAAATGATGGTCT+TGG 0.456568 4_2:+59306985 None:intergenic
AATACCCTGGGATGTATGAT+TGG 0.457792 4_2:+59308163 None:intergenic
TGAAGATGCAGGCATGTTCA+TGG 0.458693 4_2:+59307296 None:intergenic
ACGGAAAAGGATGCATGTGC+AGG 0.463084 4_2:+59307436 None:intergenic
GAGGCATACCTCCTCCATCC+TGG 0.464929 4_2:-59307221 Msa0611180:CDS
TTGGCATTGGAGGAGCGTAT+AGG 0.467631 4_2:-59305852 Msa0611180:CDS
CTGGGTATTTGATGCGGAGA+AGG 0.469401 4_2:+59307558 None:intergenic
GTTGCATAGAACTATCTTCA+AGG 0.469481 4_2:+59307904 None:intergenic
ATTACAGGAATTGTTGGCAT+TGG 0.469952 4_2:-59305865 Msa0611180:intron
TACCATTGAAGGAAATGCAT+TGG 0.475872 4_2:+59307704 None:intergenic
TACATGGCTTGGGGAGATAG+TGG 0.476826 4_2:-59307978 Msa0611180:CDS
CACCCCTCCGCATTGCTAGC+AGG 0.478449 4_2:+59306520 None:intergenic
ACTTCCTCTCATCTTAGATT+GGG 0.478741 4_2:-59305394 Msa0611180:three_prime_UTR
TTCATGGTTAAATGTCCAGC+TGG 0.479375 4_2:+59307161 None:intergenic
GCAGCTCTATTCCACGGAAA+AGG 0.483068 4_2:+59307423 None:intergenic
TTCTCTCTATCTAATCCAAA+AGG 0.484392 4_2:+59308059 None:intergenic
GAGAGAGAGTAATTAAAGGA+AGG 0.487700 4_2:+59310526 None:intergenic
CTTGAAGATCTGGCCACTCT+AGG 0.488392 4_2:+59307396 None:intergenic
AGGAAGGATGAATTCTGGAT+TGG 0.489393 4_2:+59308204 None:intergenic
TCTAGCAATGTGAACAATGC+TGG 0.492365 4_2:-59307243 Msa0611180:CDS
TTTGACCCGTTCCTATATCA+TGG 0.495379 4_2:-59306023 Msa0611180:CDS
GCATGTGCAGGGATGGTGAC+TGG 0.496504 4_2:+59307448 None:intergenic
ACTAGATGCTGAGCTGATTG+AGG 0.497175 4_2:+59307083 None:intergenic
AATCTCGGTTTGCTGGATTG+TGG 0.503034 4_2:-59305596 Msa0611180:CDS
AATGACCCATCTACATCATC+CGG 0.504390 4_2:-59307634 Msa0611180:CDS
CCATGCCATGATATAGGAAC+GGG 0.504505 4_2:+59306018 None:intergenic
AGCTTTAATGGCTGGAATAC+CGG 0.504903 4_2:-59308362 Msa0611180:CDS
CCAAGTAATTGCCTTTCCTC+GGG 0.505140 4_2:+59308230 None:intergenic
GCGTCTCCCCTCATTGTCAA+AGG 0.505562 4_2:+59306912 None:intergenic
CTAATGTGAGCTTTAATGGC+TGG 0.506591 4_2:-59308370 Msa0611180:CDS
AGTTCTTCTTTAGCTAATTG+GGG 0.509140 4_2:-59307948 Msa0611180:CDS
CGAACCTTGCTGTATCTGTC+AGG 0.510627 4_2:-59305736 Msa0611180:intron
CTAGATGCTGAGCTGATTGA+GGG 0.511581 4_2:+59307084 None:intergenic
TTGGATTTAAGGTTAGCAGC+TGG 0.512421 4_2:-59307513 Msa0611180:CDS
ATATCAGTGCCGTTAGAACT+AGG 0.513259 4_2:+59308497 None:intergenic
ATCATTTATGACGGAGAGAA+GGG 0.513405 4_2:-59306977 Msa0611180:CDS
TCGTAGGAGGAATATGTTGA+TGG 0.514134 4_2:-59305623 Msa0611180:intron
GCTTTGGTTCGTGTATCAAA+CGG 0.514554 4_2:+59310628 None:intergenic
TTCGTTAAATGAGAGAGAGC+TGG 0.514820 4_2:+59307539 None:intergenic
TTAGACCATCATCGTTGACT+TGG 0.518707 4_2:+59308309 None:intergenic
GGCCTCTACGAAACTTTGAT+AGG 0.519192 4_2:-59307659 Msa0611180:CDS
TCCTTCAATGGTAAGTATTG+CGG 0.521830 4_2:-59307694 Msa0611180:CDS
AAGAGATCCTGAATTGAAAT+GGG 0.522041 4_2:+59310340 None:intergenic
CTTGTATTCTGCTGAAATGG+AGG 0.528159 4_2:+59307750 None:intergenic
TGAAGGAGGGCCGGAAGTAG+AGG 0.529847 4_2:+59307041 None:intergenic
GATGCTCGGTACCATCTCTT+GGG 0.530647 4_2:+59307319 None:intergenic
GAGTTTCAGAGTTCAGTCCC+TGG 0.531646 4_2:-59307116 Msa0611180:CDS
CAGCTCCAATCATACATCCC+AGG 0.532081 4_2:-59308168 Msa0611180:CDS
TTCTCCTCGTCACGAGGCCA+AGG 0.532429 4_2:+59305499 None:intergenic
TATGTTGATGGACAGAATCT+CGG 0.533020 4_2:-59305611 Msa0611180:CDS
CTGGGATGTATGATTGGAGC+TGG 0.533285 4_2:+59308169 None:intergenic
CCATACCAAAATTAATACCC+TGG 0.533313 4_2:+59308150 None:intergenic
GTCAACCAAGTCAACGATGA+TGG 0.533785 4_2:-59308314 Msa0611180:CDS
CATCATTTATGACGGAGAGA+AGG 0.535519 4_2:-59306978 Msa0611180:CDS
CAGTCCAGAACTGGGTTCAC+CGG 0.537341 4_2:+59308343 None:intergenic
AACTCATCTGATCGCGGGAA+AGG 0.537842 4_2:-59308116 Msa0611180:CDS
TTGTATTCTGCTGAAATGGA+GGG 0.540043 4_2:+59307751 None:intergenic
GTGCTTCATCAGCAAGCTCT+GGG 0.541448 4_2:-59308001 Msa0611180:CDS
CTTCTCTCCGTCATAAATGA+TGG 0.542772 4_2:+59306979 None:intergenic
ACTGCGTGTTTACGTGGTAC+TGG 0.544695 4_2:-59308395 Msa0611180:CDS
GGTAAGTATTGCGGAAAATG+TGG 0.545122 4_2:-59307685 Msa0611180:CDS
ACTCGTTGCCTAATCCCAGC+TGG 0.546716 4_2:-59307176 Msa0611180:CDS
AGAATACCTCAGATATAAGC+CGG 0.546777 4_2:+59306890 None:intergenic
CATGTTAACAATTGTTGGGA+AGG 0.548563 4_2:+59308529 None:intergenic
GGCCGGAAGTAGAGGAGGAA+TGG 0.548685 4_2:+59307049 None:intergenic
TGCAGTGCTATTGCTGAGGA+TGG 0.548890 4_2:-59308260 Msa0611180:CDS
GTAACACGGAAATCCTCTAA+AGG 0.548952 4_2:+59307777 None:intergenic
AACATTACCCTTTGACAATG+AGG 0.550770 4_2:-59306920 Msa0611180:CDS
CCTGTTGATGTTAAATTGAG+AGG 0.551479 4_2:+59307603 None:intergenic
TTAAGAATCTTCCCAAGAGA+TGG 0.552146 4_2:-59307330 Msa0611180:CDS
CGTCTCCCCTCATTGTCAAA+GGG 0.557688 4_2:+59306913 None:intergenic
GAAGATGCATACCAACCTGC+AGG 0.560217 4_2:+59307264 None:intergenic
ATAAATGATGGTCTTGGATG+TGG 0.560899 4_2:+59306991 None:intergenic
ATGGATATGATATGTGAGGA+GGG 0.561327 4_2:+59305471 None:intergenic
ACCAGATTCAGTCCAGAACT+GGG 0.561939 4_2:+59308335 None:intergenic
CGTTCCCAATCTAAGATGAG+AGG 0.563654 4_2:+59305390 None:intergenic
CCCGTTCCTATATCATGGCA+TGG 0.564089 4_2:-59306018 Msa0611180:CDS
CTGAGAAAATGAAGGAGGGC+CGG 0.564669 4_2:+59307032 None:intergenic
AGCTGCTAACCTTAAATCCA+AGG 0.566796 4_2:+59307515 None:intergenic
ACAATTGTTAACATGATGCA+AGG 0.567765 4_2:-59308521 Msa0611180:CDS
AATGGATATGATATGTGAGG+AGG 0.569417 4_2:+59305470 None:intergenic
ACATTACCCTTTGACAATGA+GGG 0.569813 4_2:-59306919 Msa0611180:CDS
TCGTTAAATGAGAGAGAGCT+GGG 0.570407 4_2:+59307540 None:intergenic
GGTAATGTTCGCAATGAATG+AGG 0.571479 4_2:+59306934 None:intergenic
TTGGTGGTTAAGCTATATAG+TGG 0.573596 4_2:-59305330 Msa0611180:three_prime_UTR
CTAGAACCCTGAGAAAATGA+AGG 0.574039 4_2:+59307024 None:intergenic
TTGACAATGAGGGGAGACGC+CGG 0.574448 4_2:-59306909 Msa0611180:CDS
CATACCAAAATTAATACCCT+GGG 0.579560 4_2:+59308151 None:intergenic
GGTTCATGTCCTGAAGATGC+AGG 0.579750 4_2:+59307285 None:intergenic
AGGCATGTTCATGGGATGCT+CGG 0.582337 4_2:+59307305 None:intergenic
TTGCTAACTCATCTGATCGC+GGG 0.582591 4_2:-59308121 Msa0611180:CDS
TTCATGCAGTGCTATTGCTG+AGG 0.583880 4_2:-59308264 Msa0611180:CDS
AGCTCCAATCATACATCCCA+GGG 0.583928 4_2:-59308167 Msa0611180:CDS
GATCCGATCCAGGATGGAGG+AGG 0.587181 4_2:+59307213 None:intergenic
TCTTCAGGACATGAACCTGC+AGG 0.587539 4_2:-59307279 Msa0611180:CDS
GGATTAGCAGCTCTATTCCA+CGG 0.587662 4_2:+59307417 None:intergenic
AAGACATGTTATCAACATCA+AGG 0.587950 4_2:+59305964 None:intergenic
CGTATAGGAGACGTAAGCAC+TGG 0.589103 4_2:-59305837 Msa0611180:CDS
CGGAAAAGGATGCATGTGCA+GGG 0.589482 4_2:+59307437 None:intergenic
AAGTCCTGCTAGCAATGCGG+AGG 0.591095 4_2:-59306524 Msa0611180:CDS
TGGGTATTTGATGCGGAGAA+GGG 0.592151 4_2:+59307559 None:intergenic
ACGGCCTTGGCCTCGTGACG+AGG 0.592438 4_2:-59305503 Msa0611180:exon
ATACCTCCTCCATCCTGGAT+CGG 0.597148 4_2:-59307216 Msa0611180:CDS
ATGCAAGGGCCTAGTTCTAA+CGG 0.598756 4_2:-59308506 Msa0611180:CDS
AGTCCTGCTAGCAATGCGGA+GGG 0.600021 4_2:-59306523 Msa0611180:CDS
AGGAGGGCCGGAAGTAGAGG+AGG 0.600626 4_2:+59307044 None:intergenic
GCCATGCCATGATATAGGAA+CGG 0.601493 4_2:+59306017 None:intergenic
GTTTGAACTAGATCCGATCC+AGG 0.602400 4_2:+59307203 None:intergenic
TTGCATAGAACTATCTTCAA+GGG 0.607661 4_2:+59307905 None:intergenic
AGCTCTGGGTACATGGCTTG+GGG 0.608752 4_2:-59307987 Msa0611180:CDS
GAAGATGCAGGCATGTTCAT+GGG 0.612414 4_2:+59307297 None:intergenic
AGCTGGGATTAGGCAACGAG+TGG 0.614305 4_2:+59307178 None:intergenic
ATGGTCTAAAATCTGAACAA+AGG 0.615474 4_2:-59308295 Msa0611180:CDS
TCATGGTTAAATGTCCAGCT+GGG 0.617200 4_2:+59307162 None:intergenic
CCGAGGAAAGGCAATTACTT+GGG 0.617285 4_2:-59308229 Msa0611180:CDS
TCCGGCTGTCAGATTATAGG+GGG 0.617959 4_2:-59308430 Msa0611180:CDS
AGATTCCGGATGATGTAGAT+GGG 0.618088 4_2:+59307629 None:intergenic
ATGGTCTAAGACCCGAGGAA+AGG 0.618806 4_2:-59308241 Msa0611180:CDS
CATTACCCTTTGACAATGAG+GGG 0.621079 4_2:-59306918 Msa0611180:CDS
TTCCGGCTGTCAGATTATAG+GGG 0.622484 4_2:-59308431 Msa0611180:CDS
TCCAAGACCATCATTTATGA+CGG 0.623304 4_2:-59306986 Msa0611180:CDS
GAACTAGATCCGATCCAGGA+TGG 0.623562 4_2:+59307207 None:intergenic
AAAGGATGCATGTGCAGGGA+TGG 0.625312 4_2:+59307441 None:intergenic
GAAATGGAGGGCTAGTAACA+CGG 0.626528 4_2:+59307763 None:intergenic
AACCCTGAGAAAATGAAGGA+GGG 0.627593 4_2:+59307028 None:intergenic
GAACCCTGAGAAAATGAAGG+AGG 0.629118 4_2:+59307027 None:intergenic
GGTGAGACTGCGTGTTTACG+TGG 0.629689 4_2:-59308401 Msa0611180:CDS
CAATTGTTAACATGATGCAA+GGG 0.631076 4_2:-59308520 Msa0611180:CDS
GAGACGCCGGCTTATATCTG+AGG 0.637714 4_2:-59306896 Msa0611180:intron
CAGGACATGAACCTGCAGGT+TGG 0.639313 4_2:-59307275 Msa0611180:CDS
AAAGGTAAAGAAACTGGTAT+CGG 0.639351 4_2:-59308098 Msa0611180:CDS
TAGAGCTGCTAATCCTAGAG+TGG 0.639565 4_2:-59307409 Msa0611180:CDS
CTAGATCCGATCCAGGATGG+AGG 0.640498 4_2:+59307210 None:intergenic
AGAGAGCTGGGTATTTGATG+CGG 0.644067 4_2:+59307552 None:intergenic
CTCCTATCAAAGTTTCGTAG+AGG 0.644531 4_2:+59307657 None:intergenic
GTGCCCAATTTGCAAAACAA+CGG 0.647258 4_2:-59305522 Msa0611180:CDS
ATTGCTAACTCATCTGATCG+CGG 0.649060 4_2:-59308122 Msa0611180:CDS
GGGTGAGAACTTACGAGCTG+AGG 0.649232 4_2:-59306502 Msa0611180:intron
GAGAGATTCTCCTCGTCACG+AGG 0.654973 4_2:+59305493 None:intergenic
GTCCTGCTAGCAATGCGGAG+GGG 0.658388 4_2:-59306522 Msa0611180:CDS
TCATTTATGACGGAGAGAAG+GGG 0.659104 4_2:-59306976 Msa0611180:CDS
TCTATGCAACTGTGTACTGG+AGG 0.660737 4_2:-59307891 Msa0611180:CDS
GATCCTGAATTGAAATGGGT+GGG 0.664031 4_2:+59310344 None:intergenic
AGATCCTGAATTGAAATGGG+TGG 0.665505 4_2:+59310343 None:intergenic
GTATTGCGGAAAATGTGGAA+AGG 0.668186 4_2:-59307680 Msa0611180:CDS
CATACCTGACAGATACAGCA+AGG 0.680407 4_2:+59305732 None:intergenic
TTTATGACGGAGAGAAGGGG+TGG 0.681408 4_2:-59306973 Msa0611180:CDS
CTCTCAATTTAACATCAACA+GGG 0.682031 4_2:-59307602 Msa0611180:CDS
ATGGGTGGGTGAGAGTTCTG+AGG 0.683665 4_2:+59310358 None:intergenic
AGCAATGTGAACAATGCTGG+AGG 0.684313 4_2:-59307240 Msa0611180:CDS
TGTTGATAACATGTCTTACG+AGG 0.689280 4_2:-59305958 Msa0611180:intron
TGAGGATGGTCTAAGACCCG+AGG 0.700114 4_2:-59308246 Msa0611180:CDS
GCCAAGTCCTGCTAGCAATG+CGG 0.702352 4_2:-59306527 Msa0611180:CDS
ATAAATGGATATGATATGTG+AGG 0.706368 4_2:+59305467 None:intergenic
ACTGTGTGATGCAGTTACTG+TGG 0.719811 4_2:+59305564 None:intergenic
ACAGTAACTGCATCACACAG+TGG 0.758156 4_2:-59305562 Msa0611180:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTACAAAAGTT+CGG - chr4_2:59305640-59305659 Msa0611180:intron 10.0%
!! TATATATATTTCAAACAAAA+GGG + chr4_2:59305832-59305851 None:intergenic 10.0%
!!! CTCTAAAAAAATCTTAAATT+AGG - chr4_2:59305286-59305305 Msa0611180:three_prime_UTR 15.0%
!! GTATATATATTTCAAACAAA+AGG + chr4_2:59305833-59305852 None:intergenic 15.0%
!!! TTTTTATTTTTGTTTGGATT+TGG - chr4_2:59305912-59305931 Msa0611180:intron 15.0%
!! AAAAATGTAATCAATAATTC+TGG - chr4_2:59309642-59309661 Msa0611180:intron 15.0%
!! TGAACTAAATAACTAATATA+CGG + chr4_2:59309709-59309728 None:intergenic 15.0%
!! AAAAGATAAAAACTGATAAA+TGG + chr4_2:59310419-59310438 None:intergenic 15.0%
!! TAGACATAAAAAAGAAATAT+TGG - chr4_2:59310519-59310538 Msa0611180:five_prime_UTR 15.0%
!! AATTGTGCATGAAATATAAT+GGG + chr4_2:59305774-59305793 None:intergenic 20.0%
!! AAATTGTGCATGAAATATAA+TGG + chr4_2:59305775-59305794 None:intergenic 20.0%
!!! TTTGGTTTATTATACTTTCA+AGG - chr4_2:59305930-59305949 Msa0611180:intron 20.0%
!! AAGAAGAATGTAATTCATTT+AGG + chr4_2:59306640-59306659 None:intergenic 20.0%
!!! AAATGTGCATATTATTTTCT+TGG + chr4_2:59307045-59307064 None:intergenic 20.0%
!! ACATAAAAAAGAAATATTGG+TGG - chr4_2:59310522-59310541 Msa0611180:five_prime_UTR 20.0%
!! TTACATTTATACTGTGATAA+TGG - chr4_2:59310563-59310582 Msa0611180:five_prime_UTR 20.0%
! AAAAGAGAGAGAGTAATTAA+AGG + chr4_2:59305349-59305368 None:intergenic 25.0%
!!! TACAAAAGTTCGGTTTTTTT+AGG - chr4_2:59305650-59305669 Msa0611180:intron 25.0%
! ATATTTCAAACAAAAGGGTA+GGG + chr4_2:59305827-59305846 None:intergenic 25.0%
! TATATTTCAAACAAAAGGGT+AGG + chr4_2:59305828-59305847 None:intergenic 25.0%
! GTTTATTATACTTTCAAGGA+AGG - chr4_2:59305934-59305953 Msa0611180:intron 25.0%
! AAGGTTACGAATTGTTTATT+GGG - chr4_2:59305953-59305972 Msa0611180:intron 25.0%
!! ATGTTGTGCTTATGTATTTT+AGG - chr4_2:59306050-59306069 Msa0611180:intron 25.0%
!! TTATTAGTCATTTAGCTTCT+TGG - chr4_2:59306278-59306297 Msa0611180:intron 25.0%
! TGAAATTGGTTAAAATGCAT+TGG + chr4_2:59306311-59306330 None:intergenic 25.0%
! AAGAATGTAATTCATTTAGG+AGG + chr4_2:59306637-59306656 None:intergenic 25.0%
!! ATTACATTCTTCTTTTGCTT+TGG - chr4_2:59306646-59306665 Msa0611180:intron 25.0%
!! TTTATTTCTTCTCATTTCTC+TGG - chr4_2:59306961-59306980 Msa0611180:CDS 25.0%
!! TGTTTTCTGCTCATTAATTT+AGG - chr4_2:59307270-59307289 Msa0611180:CDS 25.0%
! AAGTTCTTCTTTAGCTAATT+GGG - chr4_2:59307919-59307938 Msa0611180:CDS 25.0%
!!! TGCTTATTTTTAGCTAAATG+TGG - chr4_2:59309274-59309293 Msa0611180:intron 25.0%
! CATCAAGTGTAATAAAATGA+TGG + chr4_2:59309473-59309492 None:intergenic 25.0%
! AAAATGCTTATAGTAGAATC+AGG - chr4_2:59309558-59309577 Msa0611180:intron 25.0%
! AACATATCTTTGTATCATAC+TGG + chr4_2:59310179-59310198 None:intergenic 25.0%
! GTATGATACAAAGATATGTT+TGG - chr4_2:59310179-59310198 Msa0611180:intron 25.0%
! ATAAATGGATATGATATGTG+AGG + chr4_2:59310404-59310423 None:intergenic 25.0%
!! AGTGCTTTTAGATATCATAA+AGG + chr4_2:59310601-59310620 None:intergenic 25.0%
GAAAAGATATGCTTATGCTT+TGG + chr4_2:59305259-59305278 None:intergenic 30.0%
!!! TATTGCCTTTTTTTCTCACT+CGG - chr4_2:59305372-59305391 Msa0611180:three_prime_UTR 30.0%
TATTACCGAGTGAGAAAAAA+AGG + chr4_2:59305380-59305399 None:intergenic 30.0%
AAGAGATCCTGAATTGAAAT+GGG + chr4_2:59305531-59305550 None:intergenic 30.0%
AAAGAGATCCTGAATTGAAA+TGG + chr4_2:59305532-59305551 None:intergenic 30.0%
GAAGAAAAAATCATTACCAG+AGG + chr4_2:59305556-59305575 None:intergenic 30.0%
!!! AAAAGTTCGGTTTTTTTAGG+AGG - chr4_2:59305653-59305672 Msa0611180:intron 30.0%
!! AGTTCTTGCATCGTTTTTAT+CGG - chr4_2:59305724-59305743 Msa0611180:intron 30.0%
GAAGGTTACGAATTGTTTAT+TGG - chr4_2:59305952-59305971 Msa0611180:intron 30.0%
ACATAAGCACAACATTAATC+AGG + chr4_2:59306045-59306064 None:intergenic 30.0%
! GCATATTTAGTTTCTCTCTT+TGG - chr4_2:59306075-59306094 Msa0611180:intron 30.0%
!! TAGAGATTTTGATGTTCGTA+AGG - chr4_2:59306122-59306141 Msa0611180:intron 30.0%
CAATTATCTTGTGCTGAAAT+TGG + chr4_2:59306325-59306344 None:intergenic 30.0%
CAATTTCAGCACAAGATAAT+TGG - chr4_2:59306323-59306342 Msa0611180:intron 30.0%
!! GTTGAGTTTTATGAACTAGT+TGG - chr4_2:59306345-59306364 Msa0611180:intron 30.0%
TTTCTTTCTTTCTCTCTGTT+TGG - chr4_2:59306401-59306420 Msa0611180:intron 30.0%
!! CTAGGTGTGACATTTATTTT+CGG - chr4_2:59306550-59306569 Msa0611180:intron 30.0%
ACACTAAGTTAAATACGATG+TGG + chr4_2:59306704-59306723 None:intergenic 30.0%
TAAATTCATTTGCCAGCTAT+TGG + chr4_2:59306736-59306755 None:intergenic 30.0%
! CTGGCAAATGAATTTAAAGT+TGG - chr4_2:59306740-59306759 Msa0611180:intron 30.0%
! AAGTTAGTTTCCTCTTATCT+TGG - chr4_2:59306777-59306796 Msa0611180:intron 30.0%
AAAACTAGACATGCAAAAGT+GGG - chr4_2:59306803-59306822 Msa0611180:intron 30.0%
! ATTCATGTGTTACTACTTAC+TGG - chr4_2:59307071-59307090 Msa0611180:CDS 30.0%
TTTCTGCTCATTAATTTAGG+TGG - chr4_2:59307273-59307292 Msa0611180:CDS 30.0%
TTCTGCTCATTAATTTAGGT+GGG - chr4_2:59307274-59307293 Msa0611180:CDS 30.0%
GCATCATGTTAACAATTGTT+GGG + chr4_2:59307346-59307365 None:intergenic 30.0%
TGCATCATGTTAACAATTGT+TGG + chr4_2:59307347-59307366 None:intergenic 30.0%
ACAATTGTTAACATGATGCA+AGG - chr4_2:59307347-59307366 Msa0611180:CDS 30.0%
CAATTGTTAACATGATGCAA+GGG - chr4_2:59307348-59307367 Msa0611180:CDS 30.0%
! ATGGTCTAAAATCTGAACAA+AGG - chr4_2:59307573-59307592 Msa0611180:CDS 30.0%
CATACCAAAATTAATACCCT+GGG + chr4_2:59307720-59307739 None:intergenic 30.0%
AAAGGTAAAGAAACTGGTAT+CGG - chr4_2:59307770-59307789 Msa0611180:CDS 30.0%
! GTTAATAACAACGATCCTTT+TGG - chr4_2:59307794-59307813 Msa0611180:CDS 30.0%
TTCTCTCTATCTAATCCAAA+AGG + chr4_2:59307812-59307831 None:intergenic 30.0%
AGTTCTTCATTCAACCAAAT+AGG - chr4_2:59307845-59307864 Msa0611180:CDS 30.0%
CAAGTTCTTCTTTAGCTAAT+TGG - chr4_2:59307918-59307937 Msa0611180:CDS 30.0%
AGTTCTTCTTTAGCTAATTG+GGG - chr4_2:59307920-59307939 Msa0611180:CDS 30.0%
TTGCATAGAACTATCTTCAA+GGG + chr4_2:59307966-59307985 None:intergenic 30.0%
! ACCATTTTCAGATTGTACAA+GGG + chr4_2:59308014-59308033 None:intergenic 30.0%
! AACCATTTTCAGATTGTACA+AGG + chr4_2:59308015-59308034 None:intergenic 30.0%
TACAATCTGAAAATGGTTAC+TGG - chr4_2:59308017-59308036 Msa0611180:CDS 30.0%
TTTCTTGTATTCTGCTGAAA+TGG + chr4_2:59308124-59308143 None:intergenic 30.0%
CTCTCAATTTAACATCAACA+GGG - chr4_2:59308266-59308285 Msa0611180:CDS 30.0%
TTAACGAATCCTTGGATTTA+AGG - chr4_2:59308344-59308363 Msa0611180:CDS 30.0%
CTAAATATATCAGTATAGCC+TGG - chr4_2:59309081-59309100 Msa0611180:intron 30.0%
TGGAACATAGAATAACTACA+TGG + chr4_2:59309316-59309335 None:intergenic 30.0%
CCTCAGATAAAAGAGAAATA+GGG + chr4_2:59309508-59309527 None:intergenic 30.0%
!! CCTATTTCTCTTTTATCTGA+GGG - chr4_2:59309506-59309525 Msa0611180:intron 30.0%
TTGTTATAATTGCTGCATAC+TGG + chr4_2:59309590-59309609 None:intergenic 30.0%
TCAACTCGCATTCAATTTAT+GGG + chr4_2:59309619-59309638 None:intergenic 30.0%
TTCAACTCGCATTCAATTTA+TGG + chr4_2:59309620-59309639 None:intergenic 30.0%
! ATAAATTGAATGCGAGTTGA+AGG - chr4_2:59309619-59309638 Msa0611180:intron 30.0%
! GTTCACAATTCTTTTCATGT+TGG - chr4_2:59309724-59309743 Msa0611180:intron 30.0%
AAGACATGTTATCAACATCA+AGG + chr4_2:59309907-59309926 None:intergenic 30.0%
CGAGGTAAAAAGATGATATA+TGG - chr4_2:59309928-59309947 Msa0611180:intron 30.0%
GAGAGAGAGTAATTAAAGGA+AGG + chr4_2:59305345-59305364 None:intergenic 35.0%
!! CGTTTTTATCGGTGTTTTGT+TGG - chr4_2:59305735-59305754 Msa0611180:intron 35.0%
!! TTTTATCGGTGTTTTGTTGG+AGG - chr4_2:59305738-59305757 Msa0611180:CDS 35.0%
! AGTTTGTGTGTGTGAGTTTT+AGG - chr4_2:59306204-59306223 Msa0611180:intron 35.0%
TTATTGATCTGTAGACGAAG+TGG + chr4_2:59306239-59306258 None:intergenic 35.0%
CAAGACATAATCTTACTGCA+AGG + chr4_2:59306471-59306490 None:intergenic 35.0%
!!! GGTCTAAGGATTTTAAGACT+AGG - chr4_2:59306532-59306551 Msa0611180:CDS 35.0%
AAGCACTATAAAAGGGGAAA+AGG + chr4_2:59306599-59306618 None:intergenic 35.0%
! TTTTCCCCTTTTATAGTGCT+TGG - chr4_2:59306598-59306617 Msa0611180:intron 35.0%
! TTTCCCCTTTTATAGTGCTT+GGG - chr4_2:59306599-59306618 Msa0611180:intron 35.0%
CATTTAGGAGGTTGTATAGA+AGG + chr4_2:59306625-59306644 None:intergenic 35.0%
! TGTATCGATAATCCAATAGC+TGG - chr4_2:59306721-59306740 Msa0611180:intron 35.0%
TTAGTTTCCTCTTATCTTGG+TGG - chr4_2:59306780-59306799 Msa0611180:intron 35.0%
! TAGTTTTCCACCAAGATAAG+AGG + chr4_2:59306790-59306809 None:intergenic 35.0%
GAAAACTAGACATGCAAAAG+TGG - chr4_2:59306802-59306821 Msa0611180:intron 35.0%
AAACTAGACATGCAAAAGTG+GGG - chr4_2:59306804-59306823 Msa0611180:intron 35.0%
ACAAATGTCATTGTCATGCT+TGG - chr4_2:59306841-59306860 Msa0611180:intron 35.0%
! ATTAAAGCTGTGAGTTTTCC+TGG - chr4_2:59306912-59306931 Msa0611180:CDS 35.0%
TTTATGAGTAGATTGTCACC+AGG + chr4_2:59306933-59306952 None:intergenic 35.0%
TAATTTCTGATTCCGTGGTA+AGG + chr4_2:59307017-59307036 None:intergenic 35.0%
ACCACGGAATCAGAAATTAT+TGG - chr4_2:59307018-59307037 Msa0611180:CDS 35.0%
ACCAATAATTTCTGATTCCG+TGG + chr4_2:59307022-59307041 None:intergenic 35.0%
AATCTCCAGCTATGTATAAG+AGG + chr4_2:59307235-59307254 None:intergenic 35.0%
TCTGCTCATTAATTTAGGTG+GGG - chr4_2:59307275-59307294 Msa0611180:CDS 35.0%
!! GGTAACTTGATTTTGATGCA+AGG - chr4_2:59307296-59307315 Msa0611180:CDS 35.0%
!! TGATTTTGATGCAAGGTCAA+AGG - chr4_2:59307303-59307322 Msa0611180:CDS 35.0%
CATGTTAACAATTGTTGGGA+AGG + chr4_2:59307342-59307361 None:intergenic 35.0%
CAAAAAGGAAGGATGAATTC+TGG + chr4_2:59307672-59307691 None:intergenic 35.0%
! ATTCATCCTTCCTTTTTGCA+AGG - chr4_2:59307674-59307693 Msa0611180:CDS 35.0%
!! ACATCCCAGGGTATTAATTT+TGG - chr4_2:59307713-59307732 Msa0611180:CDS 35.0%
CCATACCAAAATTAATACCC+TGG + chr4_2:59307721-59307740 None:intergenic 35.0%
!! CCAGGGTATTAATTTTGGTA+TGG - chr4_2:59307718-59307737 Msa0611180:CDS 35.0%
GATAGAGAGAAGACATCAAT+TGG - chr4_2:59307821-59307840 Msa0611180:CDS 35.0%
GTTGCATAGAACTATCTTCA+AGG + chr4_2:59307967-59307986 None:intergenic 35.0%
TCCCTTGTACAATCTGAAAA+TGG - chr4_2:59308010-59308029 Msa0611180:CDS 35.0%
TCTGTTGATCTTAATGTTCC+TGG - chr4_2:59308049-59308068 Msa0611180:CDS 35.0%
TTGTATTCTGCTGAAATGGA+GGG + chr4_2:59308120-59308139 None:intergenic 35.0%
TTCCAATGCATTTCCTTCAA+TGG - chr4_2:59308162-59308181 Msa0611180:CDS 35.0%
TACCATTGAAGGAAATGCAT+TGG + chr4_2:59308167-59308186 None:intergenic 35.0%
! TCCTTCAATGGTAAGTATTG+CGG - chr4_2:59308174-59308193 Msa0611180:CDS 35.0%
! AAATTGAGAGGTACAGATTC+CGG + chr4_2:59308256-59308275 None:intergenic 35.0%
CCTGTTGATGTTAAATTGAG+AGG + chr4_2:59308268-59308287 None:intergenic 35.0%
CCTCTCAATTTAACATCAAC+AGG - chr4_2:59308265-59308284 Msa0611180:CDS 35.0%
TCTCTCATTTAACGAATCCT+TGG - chr4_2:59308336-59308355 Msa0611180:CDS 35.0%
GCTATAAGAACTTGAAGATC+TGG + chr4_2:59308485-59308504 None:intergenic 35.0%
! TCTTCAAGTTCTTATAGCTC+AGG - chr4_2:59308487-59308506 Msa0611180:CDS 35.0%
TTAAGAATCTTCCCAAGAGA+TGG - chr4_2:59308538-59308557 Msa0611180:CDS 35.0%
! CTCTCTGTAGATTTTCTGAT+GGG + chr4_2:59308735-59308754 None:intergenic 35.0%
! ACTCTCTGTAGATTTTCTGA+TGG + chr4_2:59308736-59308755 None:intergenic 35.0%
TCAGCATCTAGTACTCATAA+TGG - chr4_2:59308796-59308815 Msa0611180:intron 35.0%
! ATAAATGATGGTCTTGGATG+TGG + chr4_2:59308880-59308899 None:intergenic 35.0%
TCCAAGACCATCATTTATGA+CGG - chr4_2:59308882-59308901 Msa0611180:intron 35.0%
! ATCATTTATGACGGAGAGAA+GGG - chr4_2:59308891-59308910 Msa0611180:intron 35.0%
AACATTACCCTTTGACAATG+AGG - chr4_2:59308948-59308967 Msa0611180:intron 35.0%
ACATTACCCTTTGACAATGA+GGG - chr4_2:59308949-59308968 Msa0611180:intron 35.0%
AGAATACCTCAGATATAAGC+CGG + chr4_2:59308981-59309000 None:intergenic 35.0%
GAAATATCATCATACCAGCA+TGG + chr4_2:59309057-59309076 None:intergenic 35.0%
GTTGTCTGAATTCTAAATCC+AGG + chr4_2:59309102-59309121 None:intergenic 35.0%
! GGATTTAGAATTCAGACAAC+AGG - chr4_2:59309102-59309121 Msa0611180:intron 35.0%
ATACGATAAACAGTATAGCC+TGG - chr4_2:59309166-59309185 Msa0611180:intron 35.0%
GTATAGCCTGGTAATACTTA+TGG - chr4_2:59309178-59309197 Msa0611180:intron 35.0%
TCAAGACCATAAGTATTACC+AGG + chr4_2:59309187-59309206 None:intergenic 35.0%
! ACTACATGGTTAGTTCATGT+AGG + chr4_2:59309302-59309321 None:intergenic 35.0%
TGATTTCACGACACAACATA+TGG + chr4_2:59309432-59309451 None:intergenic 35.0%
!! CCCTATTTCTCTTTTATCTG+AGG - chr4_2:59309505-59309524 Msa0611180:intron 35.0%
CCCTCAGATAAAAGAGAAAT+AGG + chr4_2:59309509-59309528 None:intergenic 35.0%
CAACTCGCATTCAATTTATG+GGG + chr4_2:59309618-59309637 None:intergenic 35.0%
TAGCATTCTCAATAGTCTAC+AGG + chr4_2:59309772-59309791 None:intergenic 35.0%
ACAATGCAAATGTAGGTCAA+AGG + chr4_2:59309810-59309829 None:intergenic 35.0%
AATCCTGACAATGCAAATGT+AGG + chr4_2:59309817-59309836 None:intergenic 35.0%
!! TGTTGATAACATGTCTTACG+AGG - chr4_2:59309910-59309929 Msa0611180:intron 35.0%
ACTTGGATTACAGGAATTGT+TGG - chr4_2:59309997-59310016 Msa0611180:intron 35.0%
ATTACAGGAATTGTTGGCAT+TGG - chr4_2:59310003-59310022 Msa0611180:intron 35.0%
TATCTGTCAGGTATGAGAAA+TGG - chr4_2:59310144-59310163 Msa0611180:intron 35.0%
! TATGTTGATGGACAGAATCT+CGG - chr4_2:59310257-59310276 Msa0611180:intron 35.0%
ATGGATATGATATGTGAGGA+GGG + chr4_2:59310400-59310419 None:intergenic 35.0%
AATGGATATGATATGTGAGG+AGG + chr4_2:59310401-59310420 None:intergenic 35.0%
AACTTCCTCTCATCTTAGAT+TGG - chr4_2:59310473-59310492 Msa0611180:five_prime_UTR 35.0%
ACTTCCTCTCATCTTAGATT+GGG - chr4_2:59310474-59310493 Msa0611180:five_prime_UTR 35.0%
! TTGGTGGTTAAGCTATATAG+TGG - chr4_2:59310538-59310557 Msa0611180:five_prime_UTR 35.0%
GATCCTGAATTGAAATGGGT+GGG + chr4_2:59305527-59305546 None:intergenic 40.0%
AGATCCTGAATTGAAATGGG+TGG + chr4_2:59305528-59305547 None:intergenic 40.0%
! ATTCAGGATCTCTTTTCCTC+TGG - chr4_2:59305537-59305556 Msa0611180:CDS 40.0%
!!! AGTTCGGTTTTTTTAGGAGG+TGG - chr4_2:59305656-59305675 Msa0611180:intron 40.0%
!!! TTGTGTGTGTGAGTTTTAGG+TGG - chr4_2:59306207-59306226 Msa0611180:intron 40.0%
GGGTACACAACAAATGTAGA+GGG + chr4_2:59306428-59306447 None:intergenic 40.0%
AGGGTACACAACAAATGTAG+AGG + chr4_2:59306429-59306448 None:intergenic 40.0%
CTTACTGCAAGGAAATCAGT+AGG + chr4_2:59306460-59306479 None:intergenic 40.0%
GACCAAGTGAGCTATAAGTT+GGG + chr4_2:59306516-59306535 None:intergenic 40.0%
AGACCAAGTGAGCTATAAGT+TGG + chr4_2:59306517-59306536 None:intergenic 40.0%
CTTATAGCTCACTTGGTCTA+AGG - chr4_2:59306518-59306537 Msa0611180:CDS 40.0%
!! GGTGTGACATTTATTTTCGG+AGG - chr4_2:59306553-59306572 Msa0611180:intron 40.0%
AAGGCCCAAGCACTATAAAA+GGG + chr4_2:59306606-59306625 None:intergenic 40.0%
CCACAAAGCTATGAGATTCA+CGG + chr4_2:59306672-59306691 None:intergenic 40.0%
AACTAGACATGCAAAAGTGG+GGG - chr4_2:59306805-59306824 Msa0611180:intron 40.0%
TCATTGTCATGCTTGGTATG+TGG - chr4_2:59306848-59306867 Msa0611180:intron 40.0%
CATTGTCATGCTTGGTATGT+GGG - chr4_2:59306849-59306868 Msa0611180:intron 40.0%
ATTGTCATGCTTGGTATGTG+GGG - chr4_2:59306850-59306869 Msa0611180:intron 40.0%
ATGCATGAGTTACGACACAT+AGG + chr4_2:59307182-59307201 None:intergenic 40.0%
! TAAGAGGCACAAAAGAGTCA+TGG + chr4_2:59307219-59307238 None:intergenic 40.0%
TTGTGCCTCTTATACATAGC+TGG - chr4_2:59307227-59307246 Msa0611180:CDS 40.0%
! TTTTGATGCAAGGTCAAAGG+AGG - chr4_2:59307306-59307325 Msa0611180:CDS 40.0%
AAGGTCAAAGGAGGACTATT+GGG - chr4_2:59307315-59307334 Msa0611180:CDS 40.0%
! ATATCAGTGCCGTTAGAACT+AGG + chr4_2:59307374-59307393 None:intergenic 40.0%
! TGCATTTTGCGCATGATTCA+AGG + chr4_2:59307411-59307430 None:intergenic 40.0%
CGCAAAATGCAGTAGATTTC+CGG - chr4_2:59307420-59307439 Msa0611180:CDS 40.0%
ATTTCCGGCTGTCAGATTAT+AGG - chr4_2:59307435-59307454 Msa0611180:CDS 40.0%
TTTCCGGCTGTCAGATTATA+GGG - chr4_2:59307436-59307455 Msa0611180:CDS 40.0%
! GGTCCTAATGTGAGCTTTAA+TGG - chr4_2:59307494-59307513 Msa0611180:CDS 40.0%
CAGCCATTAAAGCTCACATT+AGG + chr4_2:59307500-59307519 None:intergenic 40.0%
! CTAATGTGAGCTTTAATGGC+TGG - chr4_2:59307498-59307517 Msa0611180:CDS 40.0%
! AGCTTTAATGGCTGGAATAC+CGG - chr4_2:59307506-59307525 Msa0611180:CDS 40.0%
! TTAGACCATCATCGTTGACT+TGG + chr4_2:59307562-59307581 None:intergenic 40.0%
AGGAAGGATGAATTCTGGAT+TGG + chr4_2:59307667-59307686 None:intergenic 40.0%
AATACCCTGGGATGTATGAT+TGG + chr4_2:59307708-59307727 None:intergenic 40.0%
ATTGCTAACTCATCTGATCG+CGG - chr4_2:59307746-59307765 Msa0611180:CDS 40.0%
! TTGCTGATGAAGCACCTATT+TGG + chr4_2:59307862-59307881 None:intergenic 40.0%
! TTCAAGGGTCTTTCTTTTGC+AGG + chr4_2:59307951-59307970 None:intergenic 40.0%
AGTTCTATGCAACTGTGTAC+TGG - chr4_2:59307974-59307993 Msa0611180:CDS 40.0%
CTTAATGTTCCTGGAAGCTT+AGG - chr4_2:59308058-59308077 Msa0611180:CDS 40.0%
! AGGTGATTTGTCACCTTTAG+AGG - chr4_2:59308078-59308097 Msa0611180:CDS 40.0%
GTAACACGGAAATCCTCTAA+AGG + chr4_2:59308094-59308113 None:intergenic 40.0%
CTTGTATTCTGCTGAAATGG+AGG + chr4_2:59308121-59308140 None:intergenic 40.0%
TCCGCAATACTTACCATTGA+AGG + chr4_2:59308178-59308197 None:intergenic 40.0%
! GGTAAGTATTGCGGAAAATG+TGG - chr4_2:59308183-59308202 Msa0611180:CDS 40.0%
GTATTGCGGAAAATGTGGAA+AGG - chr4_2:59308188-59308207 Msa0611180:CDS 40.0%
CTCCTATCAAAGTTTCGTAG+AGG + chr4_2:59308214-59308233 None:intergenic 40.0%
AATGACCCATCTACATCATC+CGG - chr4_2:59308234-59308253 Msa0611180:CDS 40.0%
AGATTCCGGATGATGTAGAT+GGG + chr4_2:59308242-59308261 None:intergenic 40.0%
TCGTTAAATGAGAGAGAGCT+GGG + chr4_2:59308331-59308350 None:intergenic 40.0%
TTCGTTAAATGAGAGAGAGC+TGG + chr4_2:59308332-59308351 None:intergenic 40.0%
AGCTGCTAACCTTAAATCCA+AGG + chr4_2:59308356-59308375 None:intergenic 40.0%
! TTGGATTTAAGGTTAGCAGC+TGG - chr4_2:59308355-59308374 Msa0611180:CDS 40.0%
TCTAGCAATGTGAACAATGC+TGG - chr4_2:59308625-59308644 Msa0611180:intron 40.0%
TTAAATGTCCAGCTGGGATT+AGG + chr4_2:59308703-59308722 None:intergenic 40.0%
TCATGGTTAAATGTCCAGCT+GGG + chr4_2:59308709-59308728 None:intergenic 40.0%
TTCATGGTTAAATGTCCAGC+TGG + chr4_2:59308710-59308729 None:intergenic 40.0%
! GATTTTCTGATGGGACTTCA+TGG + chr4_2:59308726-59308745 None:intergenic 40.0%
TGAGCTGATTGAGGGAAAAA+GGG + chr4_2:59308779-59308798 None:intergenic 40.0%
AACCCTGAGAAAATGAAGGA+GGG + chr4_2:59308843-59308862 None:intergenic 40.0%
CTAGAACCCTGAGAAAATGA+AGG + chr4_2:59308847-59308866 None:intergenic 40.0%
TCCGTCATAAATGATGGTCT+TGG + chr4_2:59308886-59308905 None:intergenic 40.0%
CTTCTCTCCGTCATAAATGA+TGG + chr4_2:59308892-59308911 None:intergenic 40.0%
! CATCATTTATGACGGAGAGA+AGG - chr4_2:59308890-59308909 Msa0611180:intron 40.0%
! TCATTTATGACGGAGAGAAG+GGG - chr4_2:59308892-59308911 Msa0611180:intron 40.0%
GGTAATGTTCGCAATGAATG+AGG + chr4_2:59308937-59308956 None:intergenic 40.0%
CATTACCCTTTGACAATGAG+GGG - chr4_2:59308950-59308969 Msa0611180:intron 40.0%
TATGCTGTACTTCTGCTTGA+AGG - chr4_2:59309026-59309045 Msa0611180:intron 40.0%
TGTCGTGAAATCAGTATTCG+AGG - chr4_2:59309439-59309458 Msa0611180:intron 40.0%
TGACCTACATTTGCATTGTC+AGG - chr4_2:59309811-59309830 Msa0611180:intron 40.0%
TTTGACCCGTTCCTATATCA+TGG - chr4_2:59309845-59309864 Msa0611180:intron 40.0%
TTTCAGCCATGCCATGATAT+AGG + chr4_2:59309859-59309878 None:intergenic 40.0%
!! CGTTAGTTCTGACTTCAACT+TGG - chr4_2:59309980-59309999 Msa0611180:intron 40.0%
CTGACTTCAACTTGGATTAC+AGG - chr4_2:59309988-59310007 Msa0611180:intron 40.0%
ACTTGTTCTTCCATGATCGT+AGG - chr4_2:59310229-59310248 Msa0611180:intron 40.0%
ACATATTCCTCCTACGATCA+TGG + chr4_2:59310242-59310261 None:intergenic 40.0%
TCGTAGGAGGAATATGTTGA+TGG - chr4_2:59310245-59310264 Msa0611180:intron 40.0%
GTGCCCAATTTGCAAAACAA+CGG - chr4_2:59310346-59310365 Msa0611180:five_prime_UTR 40.0%
!! AGGCCGTTGTTTTGCAAATT+GGG + chr4_2:59310352-59310371 None:intergenic 40.0%
!! AAGGCCGTTGTTTTGCAAAT+TGG + chr4_2:59310353-59310372 None:intergenic 40.0%
AATTTGCAAAACAACGGCCT+TGG - chr4_2:59310352-59310371 Msa0611180:five_prime_UTR 40.0%
TCACCCACCCATTTCAATTC+AGG - chr4_2:59305521-59305540 Msa0611180:CDS 45.0%
CTGGAAATGCCGATATTGCT+AGG - chr4_2:59306155-59306174 Msa0611180:intron 45.0%
AAATGCCGATATTGCTAGGC+TGG - chr4_2:59306159-59306178 Msa0611180:intron 45.0%
GATGTCCAGCCTAGCAATAT+CGG + chr4_2:59306167-59306186 None:intergenic 45.0%
ACTCACACACACAAACTGCA+AGG + chr4_2:59306201-59306220 None:intergenic 45.0%
AAATCAGTAGGAGCTCGGAA+GGG + chr4_2:59306448-59306467 None:intergenic 45.0%
CAAGGAAATCAGTAGGAGCT+CGG + chr4_2:59306453-59306472 None:intergenic 45.0%
! CAAGTGAGCTATAAGTTGGG+TGG + chr4_2:59306513-59306532 None:intergenic 45.0%
CACCCAACTTATAGCTCACT+TGG - chr4_2:59306511-59306530 Msa0611180:CDS 45.0%
GGGAAAAGGTTGCATCATGA+GGG + chr4_2:59306585-59306604 None:intergenic 45.0%
AGGCCCAAGCACTATAAAAG+GGG + chr4_2:59306605-59306624 None:intergenic 45.0%
GAAGGCCCAAGCACTATAAA+AGG + chr4_2:59306607-59306626 None:intergenic 45.0%
! CCGTGAATCTCATAGCTTTG+TGG - chr4_2:59306669-59306688 Msa0611180:intron 45.0%
ACTAGACATGCAAAAGTGGG+GGG - chr4_2:59306806-59306825 Msa0611180:intron 45.0%
CTGGTCTAGATCTCCGATTA+AGG - chr4_2:59306980-59306999 Msa0611180:CDS 45.0%
GGAGCTCATGCATCCTTAAT+CGG + chr4_2:59306996-59307015 None:intergenic 45.0%
TCGTAACTCATGCATTCTGC+AGG - chr4_2:59307187-59307206 Msa0611180:CDS 45.0%
CAAGGTCAAAGGAGGACTAT+TGG - chr4_2:59307314-59307333 Msa0611180:CDS 45.0%
!! ATGCAAGGGCCTAGTTCTAA+CGG - chr4_2:59307362-59307381 Msa0611180:CDS 45.0%
TTCCGGCTGTCAGATTATAG+GGG - chr4_2:59307437-59307456 Msa0611180:CDS 45.0%
TCAGATTATAGGGGGTCTTC+TGG - chr4_2:59307446-59307465 Msa0611180:CDS 45.0%
ACCAGATTCAGTCCAGAACT+GGG + chr4_2:59307536-59307555 None:intergenic 45.0%
GTCAACCAAGTCAACGATGA+TGG - chr4_2:59307554-59307573 Msa0611180:CDS 45.0%
! TTCATGCAGTGCTATTGCTG+AGG - chr4_2:59307604-59307623 Msa0611180:CDS 45.0%
CCAAGTAATTGCCTTTCCTC+GGG + chr4_2:59307641-59307660 None:intergenic 45.0%
CCCAAGTAATTGCCTTTCCT+CGG + chr4_2:59307642-59307661 None:intergenic 45.0%
CCGAGGAAAGGCAATTACTT+GGG - chr4_2:59307639-59307658 Msa0611180:CDS 45.0%
CTGGAACCTTGCAAAAAGGA+AGG + chr4_2:59307683-59307702 None:intergenic 45.0%
AGCTCCAATCATACATCCCA+GGG - chr4_2:59307701-59307720 Msa0611180:CDS 45.0%
TTGCTAACTCATCTGATCGC+GGG - chr4_2:59307747-59307766 Msa0611180:CDS 45.0%
! AGGGTCTTTCTTTTGCAGGA+AGG + chr4_2:59307947-59307966 None:intergenic 45.0%
TCTATGCAACTGTGTACTGG+AGG - chr4_2:59307977-59307996 Msa0611180:CDS 45.0%
GACAAATCACCTAAGCTTCC+AGG + chr4_2:59308070-59308089 None:intergenic 45.0%
! GAAATGGAGGGCTAGTAACA+CGG + chr4_2:59308108-59308127 None:intergenic 45.0%
GGCCTCTACGAAACTTTGAT+AGG - chr4_2:59308209-59308228 Msa0611180:CDS 45.0%
CAGATTCCGGATGATGTAGA+TGG + chr4_2:59308243-59308262 None:intergenic 45.0%
TGGGTATTTGATGCGGAGAA+GGG + chr4_2:59308312-59308331 None:intergenic 45.0%
AGAGAGCTGGGTATTTGATG+CGG + chr4_2:59308319-59308338 None:intergenic 45.0%
! GGATTAGCAGCTCTATTCCA+CGG + chr4_2:59308454-59308473 None:intergenic 45.0%
TAGAGCTGCTAATCCTAGAG+TGG - chr4_2:59308459-59308478 Msa0611180:CDS 45.0%
GAAGATGCAGGCATGTTCAT+GGG + chr4_2:59308574-59308593 None:intergenic 45.0%
TGAAGATGCAGGCATGTTCA+TGG + chr4_2:59308575-59308594 None:intergenic 45.0%
ATGAACATGCCTGCATCTTC+AGG - chr4_2:59308574-59308593 Msa0611180:exon 45.0%
AGCAATGTGAACAATGCTGG+AGG - chr4_2:59308628-59308647 Msa0611180:intron 45.0%
GTTTGAACTAGATCCGATCC+AGG + chr4_2:59308668-59308687 None:intergenic 45.0%
ATTGAGGGAAAAAGGGACCA+GGG + chr4_2:59308772-59308791 None:intergenic 45.0%
CTGAGCTGATTGAGGGAAAA+AGG + chr4_2:59308780-59308799 None:intergenic 45.0%
CTAGATGCTGAGCTGATTGA+GGG + chr4_2:59308787-59308806 None:intergenic 45.0%
ACTAGATGCTGAGCTGATTG+AGG + chr4_2:59308788-59308807 None:intergenic 45.0%
GAACCCTGAGAAAATGAAGG+AGG + chr4_2:59308844-59308863 None:intergenic 45.0%
CTGAGGGAGATACTCATCTT+CGG - chr4_2:59309522-59309541 Msa0611180:intron 45.0%
CCATGCCATGATATAGGAAC+GGG + chr4_2:59309853-59309872 None:intergenic 45.0%
GCCATGCCATGATATAGGAA+CGG + chr4_2:59309854-59309873 None:intergenic 45.0%
! ACAGGAATTGTTGGCATTGG+AGG - chr4_2:59310006-59310025 Msa0611180:intron 45.0%
CATACCTGACAGATACAGCA+AGG + chr4_2:59310139-59310158 None:intergenic 45.0%
TGTTCTTCCATGATCGTAGG+AGG - chr4_2:59310232-59310251 Msa0611180:intron 45.0%
!! AATCTCGGTTTGCTGGATTG+TGG - chr4_2:59310272-59310291 Msa0611180:intron 45.0%
!! ATCTCGGTTTGCTGGATTGT+GGG - chr4_2:59310273-59310292 Msa0611180:intron 45.0%
ACTGTGTGATGCAGTTACTG+TGG + chr4_2:59310307-59310326 None:intergenic 45.0%
ACAGTAACTGCATCACACAG+TGG - chr4_2:59310306-59310325 Msa0611180:intron 45.0%
! CGTTCCCAATCTAAGATGAG+AGG + chr4_2:59310481-59310500 None:intergenic 45.0%
!!! ATTTAATTTTTATTTTTGTT+TGG - chr4_2:59305906-59305925 Msa0611180:intron 5.0%
TTCGTAAGGCCTAGCTCAAC+TGG - chr4_2:59306136-59306155 Msa0611180:intron 50.0%
TCGGCATTTCCAGTTGAGCT+AGG + chr4_2:59306148-59306167 None:intergenic 50.0%
GAAATCAGTAGGAGCTCGGA+AGG + chr4_2:59306449-59306468 None:intergenic 50.0%
GGGGAAAAGGTTGCATCATG+AGG + chr4_2:59306586-59306605 None:intergenic 50.0%
GATGCATGAGCTCCTTACCA+CGG - chr4_2:59307002-59307021 Msa0611180:CDS 50.0%
TCCGGCTGTCAGATTATAGG+GGG - chr4_2:59307438-59307457 Msa0611180:CDS 50.0%
ACCCCCTATAATCTGACAGC+CGG + chr4_2:59307442-59307461 None:intergenic 50.0%
ACTGCGTGTTTACGTGGTAC+TGG - chr4_2:59307473-59307492 Msa0611180:CDS 50.0%
AATACCGGTGAACCCAGTTC+TGG - chr4_2:59307521-59307540 Msa0611180:CDS 50.0%
!! ACCCAGTTCTGGACTGAATC+TGG - chr4_2:59307532-59307551 Msa0611180:CDS 50.0%
GACCAGATTCAGTCCAGAAC+TGG + chr4_2:59307537-59307556 None:intergenic 50.0%
! TGCAGTGCTATTGCTGAGGA+TGG - chr4_2:59307608-59307627 Msa0611180:CDS 50.0%
! ATGGTCTAAGACCCGAGGAA+AGG - chr4_2:59307627-59307646 Msa0611180:CDS 50.0%
CCCGAGGAAAGGCAATTACT+TGG - chr4_2:59307638-59307657 Msa0611180:CDS 50.0%
GGAGCTGGAACCTTGCAAAA+AGG + chr4_2:59307687-59307706 None:intergenic 50.0%
CTGGGATGTATGATTGGAGC+TGG + chr4_2:59307702-59307721 None:intergenic 50.0%
CAGCTCCAATCATACATCCC+AGG - chr4_2:59307700-59307719 Msa0611180:CDS 50.0%
AACTCATCTGATCGCGGGAA+AGG - chr4_2:59307752-59307771 Msa0611180:CDS 50.0%
CGCGGGAAAGGTAAAGAAAC+TGG - chr4_2:59307764-59307783 Msa0611180:CDS 50.0%
GTGCTTCATCAGCAAGCTCT+GGG - chr4_2:59307867-59307886 Msa0611180:CDS 50.0%
!! ATCAGCAAGCTCTGGGTACA+TGG - chr4_2:59307874-59307893 Msa0611180:CDS 50.0%
!! AAGCTCTGGGTACATGGCTT+GGG - chr4_2:59307880-59307899 Msa0611180:CDS 50.0%
! TACATGGCTTGGGGAGATAG+TGG - chr4_2:59307890-59307909 Msa0611180:CDS 50.0%
CTGGGTATTTGATGCGGAGA+AGG + chr4_2:59308313-59308332 None:intergenic 50.0%
AAAGGATGCATGTGCAGGGA+TGG + chr4_2:59308430-59308449 None:intergenic 50.0%
CGGAAAAGGATGCATGTGCA+GGG + chr4_2:59308434-59308453 None:intergenic 50.0%
ACGGAAAAGGATGCATGTGC+AGG + chr4_2:59308435-59308454 None:intergenic 50.0%
! TGCACATGCATCCTTTTCCG+TGG - chr4_2:59308434-59308453 Msa0611180:CDS 50.0%
GCAGCTCTATTCCACGGAAA+AGG + chr4_2:59308448-59308467 None:intergenic 50.0%
CTTGAAGATCTGGCCACTCT+AGG + chr4_2:59308475-59308494 None:intergenic 50.0%
GATGCTCGGTACCATCTCTT+GGG + chr4_2:59308552-59308571 None:intergenic 50.0%
AGGCATGTTCATGGGATGCT+CGG + chr4_2:59308566-59308585 None:intergenic 50.0%
GGTTCATGTCCTGAAGATGC+AGG + chr4_2:59308586-59308605 None:intergenic 50.0%
TCTTCAGGACATGAACCTGC+AGG - chr4_2:59308589-59308608 Msa0611180:intron 50.0%
GAAGATGCATACCAACCTGC+AGG + chr4_2:59308607-59308626 None:intergenic 50.0%
ATACCTCCTCCATCCTGGAT+CGG - chr4_2:59308652-59308671 Msa0611180:intron 50.0%
GAACTAGATCCGATCCAGGA+TGG + chr4_2:59308664-59308683 None:intergenic 50.0%
GAGTTTCAGAGTTCAGTCCC+TGG - chr4_2:59308752-59308771 Msa0611180:intron 50.0%
GATTGAGGGAAAAAGGGACC+AGG + chr4_2:59308773-59308792 None:intergenic 50.0%
CTGAGAAAATGAAGGAGGGC+CGG + chr4_2:59308839-59308858 None:intergenic 50.0%
! GGCCCTCCTTCATTTTCTCA+GGG - chr4_2:59308838-59308857 Msa0611180:intron 50.0%
! TTTATGACGGAGAGAAGGGG+TGG - chr4_2:59308895-59308914 Msa0611180:intron 50.0%
CGTCTCCCCTCATTGTCAAA+GGG + chr4_2:59308958-59308977 None:intergenic 50.0%
GCTTGAAGGATATGCCATGC+TGG - chr4_2:59309040-59309059 Msa0611180:intron 50.0%
!! GCATGCTTTGAAGCAAGCAC+AGG - chr4_2:59309746-59309765 Msa0611180:intron 50.0%
CCCGTTCCTATATCATGGCA+TGG - chr4_2:59309850-59309869 Msa0611180:intron 50.0%
ACGTAGAGCAGCATTGCTGA+TGG + chr4_2:59309963-59309982 None:intergenic 50.0%
! TTGGCATTGGAGGAGCGTAT+AGG - chr4_2:59310016-59310035 Msa0611180:intron 50.0%
CGTATAGGAGACGTAAGCAC+TGG - chr4_2:59310031-59310050 Msa0611180:intron 50.0%
! CGAACCTTGCTGTATCTGTC+AGG - chr4_2:59310132-59310151 Msa0611180:intron 50.0%
! TGGACAGAATCTCGGTTTGC+TGG - chr4_2:59310265-59310284 Msa0611180:intron 50.0%
ATGGGTGGGTGAGAGTTCTG+AGG + chr4_2:59305513-59305532 None:intergenic 55.0%
GGTGAGACTGCGTGTTTACG+TGG - chr4_2:59307467-59307486 Msa0611180:CDS 55.0%
CAGTCCAGAACTGGGTTCAC+CGG + chr4_2:59307528-59307547 None:intergenic 55.0%
! TGAGGATGGTCTAAGACCCG+AGG - chr4_2:59307622-59307641 Msa0611180:CDS 55.0%
GGTGCTTCATCAGCAAGCTC+TGG - chr4_2:59307866-59307885 Msa0611180:CDS 55.0%
!! CAAGCTCTGGGTACATGGCT+TGG - chr4_2:59307879-59307898 Msa0611180:CDS 55.0%
!! AGCTCTGGGTACATGGCTTG+GGG - chr4_2:59307881-59307900 Msa0611180:CDS 55.0%
GGATGCTCGGTACCATCTCT+TGG + chr4_2:59308553-59308572 None:intergenic 55.0%
CAGGACATGAACCTGCAGGT+TGG - chr4_2:59308593-59308612 Msa0611180:intron 55.0%
CTAGATCCGATCCAGGATGG+AGG + chr4_2:59308661-59308680 None:intergenic 55.0%
AGCTGGGATTAGGCAACGAG+TGG + chr4_2:59308693-59308712 None:intergenic 55.0%
ACTCGTTGCCTAATCCCAGC+TGG - chr4_2:59308692-59308711 Msa0611180:intron 55.0%
GGCCATTCCTCCTCTACTTC+CGG - chr4_2:59308817-59308836 Msa0611180:intron 55.0%
! CGGCCCTCCTTCATTTTCTC+AGG - chr4_2:59308837-59308856 Msa0611180:intron 55.0%
GCGTCTCCCCTCATTGTCAA+AGG + chr4_2:59308959-59308978 None:intergenic 55.0%
TTGACAATGAGGGGAGACGC+CGG - chr4_2:59308959-59308978 Msa0611180:intron 55.0%
!! GAGACGCCGGCTTATATCTG+AGG - chr4_2:59308972-59308991 Msa0611180:intron 55.0%
CTAGCAGGACTTGGCGAATC+TGG + chr4_2:59309336-59309355 None:intergenic 55.0%
GCCAAGTCCTGCTAGCAATG+CGG - chr4_2:59309341-59309360 Msa0611180:intron 55.0%
TCCGCATTGCTAGCAGGACT+TGG + chr4_2:59309345-59309364 None:intergenic 55.0%
AAGTCCTGCTAGCAATGCGG+AGG - chr4_2:59309344-59309363 Msa0611180:intron 55.0%
AGTCCTGCTAGCAATGCGGA+GGG - chr4_2:59309345-59309364 Msa0611180:intron 55.0%
GGGTGAGAACTTACGAGCTG+AGG - chr4_2:59309366-59309385 Msa0611180:intron 55.0%
GAGAGATTCTCCTCGTCACG+AGG + chr4_2:59310378-59310397 None:intergenic 55.0%
AGGTTAGCAGCTGGAGCAGC+TGG - chr4_2:59308364-59308383 Msa0611180:CDS 60.0%
GCATGTGCAGGGATGGTGAC+TGG + chr4_2:59308423-59308442 None:intergenic 60.0%
GAGGCATACCTCCTCCATCC+TGG - chr4_2:59308647-59308666 Msa0611180:intron 60.0%
GATCCGATCCAGGATGGAGG+AGG + chr4_2:59308658-59308677 None:intergenic 60.0%
GGCCGGAAGTAGAGGAGGAA+TGG + chr4_2:59308822-59308841 None:intergenic 60.0%
TGAAGGAGGGCCGGAAGTAG+AGG + chr4_2:59308830-59308849 None:intergenic 60.0%
GTCCTGCTAGCAATGCGGAG+GGG - chr4_2:59309346-59309365 Msa0611180:intron 60.0%
TTCTCCTCGTCACGAGGCCA+AGG + chr4_2:59310372-59310391 None:intergenic 60.0%
AGGAGGGCCGGAAGTAGAGG+AGG + chr4_2:59308827-59308846 None:intergenic 65.0%
CACCCCTCCGCATTGCTAGC+AGG + chr4_2:59309351-59309370 None:intergenic 65.0%
ACGGCCTTGGCCTCGTGACG+AGG - chr4_2:59310365-59310384 Msa0611180:five_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 59305242 59310648 59305242 ID=Msa0611180;Name=Msa0611180
chr4_2 mRNA 59305242 59310648 59305242 ID=Msa0611180-mRNA-1;Parent=Msa0611180;Name=Msa0611180-mRNA-1;_AED=0.10;_eAED=0.10;_QI=336|1|1|1|0.8|0.66|6|266|702
chr4_2 exon 59305242 59305639 59305242 ID=Msa0611180-mRNA-1:exon:15743;Parent=Msa0611180-mRNA-1
chr4_2 exon 59305737 59305880 59305737 ID=Msa0611180-mRNA-1:exon:15742;Parent=Msa0611180-mRNA-1
chr4_2 exon 59305959 59306057 59305959 ID=Msa0611180-mRNA-1:exon:15741;Parent=Msa0611180-mRNA-1
chr4_2 exon 59306503 59306553 59306503 ID=Msa0611180-mRNA-1:exon:15740;Parent=Msa0611180-mRNA-1
chr4_2 exon 59306897 59308598 59306897 ID=Msa0611180-mRNA-1:exon:15739;Parent=Msa0611180-mRNA-1
chr4_2 exon 59310332 59310648 59310332 ID=Msa0611180-mRNA-1:exon:15738;Parent=Msa0611180-mRNA-1
chr4_2 five_prime_UTR 59310332 59310648 59310332 ID=Msa0611180-mRNA-1:five_prime_utr;Parent=Msa0611180-mRNA-1
chr4_2 five_prime_UTR 59308580 59308598 59308580 ID=Msa0611180-mRNA-1:five_prime_utr;Parent=Msa0611180-mRNA-1
chr4_2 CDS 59306897 59308579 59306897 ID=Msa0611180-mRNA-1:cds;Parent=Msa0611180-mRNA-1
chr4_2 CDS 59306503 59306553 59306503 ID=Msa0611180-mRNA-1:cds;Parent=Msa0611180-mRNA-1
chr4_2 CDS 59305959 59306057 59305959 ID=Msa0611180-mRNA-1:cds;Parent=Msa0611180-mRNA-1
chr4_2 CDS 59305737 59305880 59305737 ID=Msa0611180-mRNA-1:cds;Parent=Msa0611180-mRNA-1
chr4_2 CDS 59305508 59305639 59305508 ID=Msa0611180-mRNA-1:cds;Parent=Msa0611180-mRNA-1
chr4_2 three_prime_UTR 59305242 59305507 59305242 ID=Msa0611180-mRNA-1:three_prime_utr;Parent=Msa0611180-mRNA-1
Gene Sequence

>Msa0611180

ATGCAAGGTCAAAGGAGGACTATTGGGTCCTTCCCAACAATTGTTAACATGATGCAAGGGCCTAGTTCTAACGGCACTGATATGAATCATCAGTCTTCCTTGAATCATGCGCAAAATGCAGTAGATTTCCGGCTGTCAGATTATAGGGGGTCTTCTGGTGAGACTGCGTGTTTACGTGGTACTGGTCCTAATGTGAGCTTTAATGGCTGGAATACCGGTGAACCCAGTTCTGGACTGAATCTGGTCAACCAAGTCAACGATGATGGTCTAAAATCTGAACAAAGGTTGTCTTCTTCATGCAGTGCTATTGCTGAGGATGGTCTAAGACCCGAGGAAAGGCAATTACTTGGGAACCAATCCAGAATTCATCCTTCCTTTTTGCAAGGTTCCAGCTCCAATCATACATCCCAGGGTATTAATTTTGGTATGGAGCACATTGCTAACTCATCTGATCGCGGGAAAGGTAAAGAAACTGGTATCGGTGTTAATAACAACGATCCTTTTGGATTAGATAGAGAGAAGACATCAATTGGCAGTTCTTCATTCAACCAAATAGGTGCTTCATCAGCAAGCTCTGGGTACATGGCTTGGGGAGATAGTGGCAGTTCAAGTTCTTCTTTAGCTAATTGGGGTCCTTCCTGCAAAAGAAAGACCCTTGAAGATAGTTCTATGCAACTGTGTACTGGAGGAAGCTCGAGTTCCCTTGTACAATCTGAAAATGGTTACTGGCTTACTGATTCTGTTGATCTTAATGTTCCTGGAAGCTTAGGTGATTTGTCACCTTTAGAGGATTTCCGTGTTACTAGCCCTCCATTTCAGCAGAATACAAGAAATGAAGCGAGACAAGAAGCTTCCAATGCATTTCCTTCAATGGTAAGTATTGCGGAAAATGTGGAAAGGCCTCTACGAAACTTTGATAGGAGAATGACCCATCTACATCATCCGGAATCTGTACCTCTCAATTTAACATCAACAGGGAGTGCTAGACATCATAATTACCCTTCTCCGCATCAAATACCCAGCTCTCTCTCATTTAACGAATCCTTGGATTTAAGGTTAGCAGCTGGAGCAGCTGGAGTAACAGCTGCTAATTCTGCTGTGACACAAAACCAGTCACCATCCCTGCACATGCATCCTTTTCCGTGGAATAGAGCTGCTAATCCTAGAGTGGCCAGATCTTCAAGTTCTTATAGCTCAGGAGAAAGAGCAGTACGTGATGATTTTAATTTAAGAATCTTCCCAAGAGATGGTACCGAGCATCCCATGAACATGCCTGCATCTTCAGGACATGAACCTGCAGGTTGGTATGCATCTTCTAGCAATGTGAACAATGCTGGAGGCATACCTCCTCCATCCTGGATCGGATCTAGTTCAAACGTCCACTCGTTGCCTAATCCCAGCTGGACATTTAACCATGAAGTCCCATCAGAAAATCTACAGAGAGTTTCAGAGTTCAGTCCCTGGTCCCTTTTTCCCTCAATCAGCTCAGCATCTAGTACTCATAATGGCCATTCCTCCTCTACTTCCGGCCCTCCTTCATTTTCTCAGGGTTCTAGCAGTAATCAACCACATCCAAGACCATCATTTATGACGGAGAGAAGGGGTGGTGATGTTCTCTCTGCTCCTCATTCATTGCGAACATTACCCTTTGACAATGAGGGGAGACGCCGGCTTATATCTGAGATTCGCCAAGTCCTGCTAGCAATGCGGAGGGGTGAGAACTTACGAGCTGAGGATTATATGCTCTTTGACCCGTTCCTATATCATGGCATGGCTGAAATGCACGACAGACACAGAGAAATGCGCCTTGATGTTGATAACATGTCTTACGAGGAATTGTTGGCATTGGAGGAGCGTATAGGAGACGTAAGCACTGGACTGAGTGAAGATATAATTAATAAGTTGATGAAACAGCGATTTTACATGTCTCTCATGACAGAGTCTTCTTCTGATCTCGAACCTTGCTGTATCTGTCAGGAGGAATATGTTGATGGACAGAATCTCGGTTTGCTGGATTGTGGGCACGAGTTCCACAGTAACTGCATCACACAGTGGCTAATGCAGAAGAATCTGTGCCCAATTTGCAAAACAACGGCCTTGGCCTCGTGA
Protein sequence

>Msa0611180

MQGQRRTIGSFPTIVNMMQGPSSNGTDMNHQSSLNHAQNAVDFRLSDYRGSSGETACLRGTGPNVSFNGWNTGEPSSGLNLVNQVNDDGLKSEQRLSSSCSAIAEDGLRPEERQLLGNQSRIHPSFLQGSSSNHTSQGINFGMEHIANSSDRGKGKETGIGVNNNDPFGLDREKTSIGSSSFNQIGASSASSGYMAWGDSGSSSSSLANWGPSCKRKTLEDSSMQLCTGGSSSSLVQSENGYWLTDSVDLNVPGSLGDLSPLEDFRVTSPPFQQNTRNEARQEASNAFPSMVSIAENVERPLRNFDRRMTHLHHPESVPLNLTSTGSARHHNYPSPHQIPSSLSFNESLDLRLAAGAAGVTAANSAVTQNQSPSLHMHPFPWNRAANPRVARSSSSYSSGERAVRDDFNLRIFPRDGTEHPMNMPASSGHEPAGWYASSSNVNNAGGIPPPSWIGSSSNVHSLPNPSWTFNHEVPSENLQRVSEFSPWSLFPSISSASSTHNGHSSSTSGPPSFSQGSSSNQPHPRPSFMTERRGGDVLSAPHSLRTLPFDNEGRRRLISEIRQVLLAMRRGENLRAEDYMLFDPFLYHGMAEMHDRHREMRLDVDNMSYEELLALEERIGDVSTGLSEDIINKLMKQRFYMSLMTESSSDLEPCCICQEEYVDGQNLGLLDCGHEFHSNCITQWLMQKNLCPICKTTALAS*