AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1447160


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1447160 MtrunA17_Chr3g0122401 98.710 465 5 1 1 464 1 465 0.0 956
Msa1447160 MtrunA17_Chr1g0161871 46.950 377 165 10 104 463 18 376 3.03e-107 323
Msa1447160 MtrunA17_Chr1g0161891 48.370 368 167 11 99 463 2 349 4.11e-107 322
Msa1447160 MtrunA17_Chr7g0220421 30.939 362 224 15 90 438 68 416 3.43e-34 133
Msa1447160 MtrunA17_Chr1g0150561 25.515 388 240 13 117 462 21 401 2.03e-30 122
Msa1447160 MtrunA17_Chr4g0052791 25.707 389 238 12 110 462 55 428 1.15e-25 108
Msa1447160 MtrunA17_Chr8g0377451 50.909 110 31 5 356 464 1 88 1.93e-23 94.0
Msa1447160 MtrunA17_Chr8g0347881 26.146 371 230 14 119 460 45 400 4.37e-23 100
Msa1447160 MtrunA17_Chr4g0003651 25.707 389 230 19 114 462 1 370 1.46e-22 99.0
Msa1447160 MtrunA17_Chr8g0347851 24.932 369 234 13 118 460 44 395 9.62e-20 90.9
Msa1447160 MtrunA17_Chr1g0152611 23.204 362 227 12 110 439 28 370 3.99e-13 70.9
Msa1447160 MtrunA17_Chr2g0293971 22.264 265 179 9 118 360 9 268 7.66e-12 66.6
Msa1447160 MtrunA17_Chr3g0078391 24.111 253 159 8 118 338 47 298 9.16e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1447160 AT1G27340.1 65.458 469 152 6 2 464 3 467 0.0 628
Msa1447160 AT5G15710.1 27.922 462 279 16 1 441 1 429 2.41e-32 128
Msa1447160 AT5G15710.2 27.922 462 279 16 1 441 1 429 2.41e-32 128
Msa1447160 AT1G30950.1 26.446 363 225 10 110 439 42 395 5.96e-31 124
Msa1447160 AT4G33160.1 23.059 425 260 13 98 464 42 457 1.16e-24 106
Msa1447160 AT4G33160.2 23.059 425 260 13 98 464 103 518 2.31e-24 106
Msa1447160 AT5G43190.1 25.833 360 224 13 105 439 38 379 7.11e-18 85.9
Msa1447160 AT3G61590.2 36.364 121 73 3 118 236 51 169 4.35e-17 83.6
Msa1447160 AT3G61590.3 36.364 121 73 3 118 236 51 169 4.35e-17 83.6
Msa1447160 AT3G61590.1 36.364 121 73 3 118 236 43 161 4.89e-17 83.2
Msa1447160 AT3G61590.4 36.667 120 72 3 119 236 80 197 6.56e-17 83.2

Find 157 sgRNAs with CRISPR-Local

Find 344 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTGGTTCCTTGCCATTTGC+AGG 0.216151 tig0031599:-32017 Msa1447160:three_prime_UTR
TTATACCATATTTGTGCTTT+GGG 0.233825 tig0031599:-31764 Msa1447160:three_prime_UTR
CCTATAATACCTTTGATAAA+AGG 0.259948 tig0031599:-31842 Msa1447160:three_prime_UTR
TGCCATTTGCAGGTCTTATT+AGG 0.276391 tig0031599:-32007 Msa1447160:three_prime_UTR
TTGTCCCCAAAGCACAAATA+TGG 0.278346 tig0031599:+31759 Msa1447160:intergenic
CGCACGGGCGATTGAGTATA+TGG 0.291268 tig0031599:-36009 Msa1447160:five_prime_UTR
GATAGAAAGAGAAAGGAAAA+AGG 0.293836 tig0031599:-35881 Msa1447160:five_prime_UTR
AAGTCCAAGCACCATATATT+TGG 0.306854 tig0031599:+32298 Msa1447160:intergenic
ATACTTCCAGGCATGTTTCC+TGG 0.307731 tig0031599:+32604 Msa1447160:intergenic
CTTATACCATATTTGTGCTT+TGG 0.320113 tig0031599:-31765 Msa1447160:three_prime_UTR
TCATAGGAAACAACCCCTTC+TGG 0.328091 tig0031599:+32505 Msa1447160:intergenic
AAAGAATGGCTGAAGGTTCC+TGG 0.339162 tig0031599:-32169 Msa1447160:CDS
AGGGGTTGTTTCCTATGATA+TGG 0.339167 tig0031599:-32500 Msa1447160:CDS
ACCCATGAAAATGTGAATTC+AGG 0.349764 tig0031599:-32946 Msa1447160:CDS
GTTTCCTATGATATGGCAAC+AGG 0.361646 tig0031599:-32493 Msa1447160:CDS
TTATTATTAGTAGAGGAAAT+CGG 0.362073 tig0031599:-35846 Msa1447160:five_prime_UTR
AAGTTATGGAACAAGAAATA+TGG 0.365064 tig0031599:-33137 Msa1447160:CDS
TTCCATAACTTCACTTGTAC+TGG 0.365202 tig0031599:+33149 Msa1447160:intergenic
TATTATTAGTAGAGGAAATC+GGG 0.366134 tig0031599:-35845 Msa1447160:five_prime_UTR
CCGTCAATGGAATTCCTTGC+TGG 0.368398 tig0031599:-33034 Msa1447160:CDS
CACTGCCGTTTCTTCCCATT+CGG 0.369756 tig0031599:+32136 Msa1447160:intergenic
CCCCTGCTTCGATCTCTTCG+AGG 0.376451 tig0031599:+33189 Msa1447160:intergenic
TAGACAGAATGCCAAATATA+TGG 0.389573 tig0031599:-32309 Msa1447160:CDS
TGCCATTGTCCCTTAACTTC+AGG 0.389987 tig0031599:-32576 Msa1447160:CDS
ACAGCCTCAAATAAATCTTC+AGG 0.391468 tig0031599:+33105 Msa1447160:intergenic
ATGATATGGCAACAGGGGTT+TGG 0.394545 tig0031599:-32486 Msa1447160:CDS
CCCACTAACTCAATCCTTCA+AGG 0.400080 tig0031599:-32779 Msa1447160:CDS
CAGTTTGCGACCTGAAGTTA+AGG 0.407146 tig0031599:+32566 Msa1447160:intergenic
TTCTGTATTCAATAACTGAA+TGG 0.413628 tig0031599:-31798 Msa1447160:three_prime_UTR
GCATTAGCGCATGGAAGGGC+TGG 0.416334 tig0031599:-35813 Msa1447160:exon
CTAATCCCAGCGTTCCTCTC+TGG 0.418673 tig0031599:-31973 Msa1447160:three_prime_UTR
CGAAGCAGGGGCAAATCATC+AGG 0.419820 tig0031599:-33177 Msa1447160:CDS
AATGGCAGGTTCATACTTCC+AGG 0.420328 tig0031599:+32592 Msa1447160:intergenic
CAGAGAGGAACGCTGGGATT+AGG 0.423155 tig0031599:+31974 Msa1447160:intergenic
AATGGAAATTCAATCAGTTC+AGG 0.423765 tig0031599:-32700 Msa1447160:CDS
ATCCAGTACAAGTGAAGTTA+TGG 0.433150 tig0031599:-33151 Msa1447160:CDS
TCCTTGAAGGATTGAGTTAG+TGG 0.433327 tig0031599:+32778 Msa1447160:intergenic
CCGAGCTGGCAACTCCTTGA+AGG 0.435297 tig0031599:+32765 Msa1447160:intergenic
CAGCCACGTGTGTATGCATA+TGG 0.440067 tig0031599:-32366 Msa1447160:CDS
ATCTGAACGCATGAAGTATA+GGG 0.440759 tig0031599:+32528 Msa1447160:intergenic
GTTCAGGCTACAAGATCCTA+TGG 0.440809 tig0031599:-32684 Msa1447160:CDS
GATCTGAACGCATGAAGTAT+AGG 0.441700 tig0031599:+32527 Msa1447160:intergenic
AAAACAAAACTCCGTTTGCT+TGG 0.442190 tig0031599:-35958 Msa1447160:five_prime_UTR
CGAGGCTTCTTAGCGGGTGG+AGG 0.447598 tig0031599:+33207 Msa1447160:intergenic
TTAGTTTGCTTTCTTGACAT+TGG 0.450160 tig0031599:-32826 Msa1447160:CDS
GTCTGGTCTCGCGTTGCTGT+AGG 0.453658 tig0031599:-32733 Msa1447160:CDS
CCTGGGTGTGTGGTGCCGAA+TGG 0.455358 tig0031599:-32151 Msa1447160:CDS
TGGCAAAACAATCAACTTTG+TGG 0.460094 tig0031599:+32867 Msa1447160:intergenic
GATAGATAGTTTACTACTTA+CGG 0.464789 tig0031599:-35987 Msa1447160:five_prime_UTR
AGGAAGATAGTTTGATGAGA+AGG 0.465365 tig0031599:+35695 Msa1447160:intergenic
GAGTAGAGATAGAAAGAGAA+AGG 0.465373 tig0031599:-35888 Msa1447160:five_prime_UTR
CTGGGTGTGTGGTGCCGAAT+GGG 0.467430 tig0031599:-32150 Msa1447160:CDS
GTTGCCAGCTCGGTCAGTTA+AGG 0.467547 tig0031599:-32755 Msa1447160:CDS
TCAGTCAAATGTAGTGGCGC+TGG 0.471171 tig0031599:+32448 Msa1447160:intergenic
TCTGGTCTCGCGTTGCTGTA+GGG 0.474671 tig0031599:-32732 Msa1447160:CDS
TCTCTTCGAGGCTTCTTAGC+GGG 0.476627 tig0031599:+33201 Msa1447160:intergenic
GGCAAAACAATCAACTTTGT+GGG 0.476939 tig0031599:+32868 Msa1447160:intergenic
TCCGCTCTGTATGCCGTCAA+TGG 0.480162 tig0031599:-33047 Msa1447160:CDS
AACCCCTGTTGCCATATCAT+AGG 0.480445 tig0031599:+32489 Msa1447160:intergenic
TTGCCAGTGGCTTCTGCTGG+GGG 0.482095 tig0031599:-32850 Msa1447160:CDS
TCCTTCAACATCACCCTCCC+AGG 0.487491 tig0031599:-35676 Msa1447160:intron
ACTTTCCAGCTGCCATTACA+AGG 0.493916 tig0031599:+33262 Msa1447160:intergenic
TGAGATCGAAACAAATGAAT+CGG 0.494220 tig0031599:-32216 Msa1447160:CDS
ACCTGGGAGGGTGATGTTGA+AGG 0.494361 tig0031599:+35675 Msa1447160:intergenic
AGTGGCAGGTCGTTGCTGTA+AGG 0.496763 tig0031599:+32053 Msa1447160:intergenic
TGAGCAAGCCTTTGTTCCCT+AGG 0.496907 tig0031599:+32248 Msa1447160:intergenic
AGCCTCGAAGAGATCGAAGC+AGG 0.497044 tig0031599:-33191 Msa1447160:CDS
TGTGGCCTTGTAATGGCAGC+TGG 0.498116 tig0031599:-33267 Msa1447160:CDS
GATGGTCAGATCATGCTTGT+GGG 0.503093 tig0031599:-32406 Msa1447160:CDS
ACAACATAGCAAGGAAAGAA+TGG 0.504668 tig0031599:-32183 Msa1447160:CDS
ACAATCAACTTTGTGGGCAG+TGG 0.506047 tig0031599:+32874 Msa1447160:intergenic
AGAAGGTTGCTGTTGAAGAA+TGG 0.508961 tig0031599:+35712 Msa1447160:intergenic
GACGGCATACAGAGCGGAAG+CGG 0.516102 tig0031599:+33052 Msa1447160:intergenic
ATCTCTTCGAGGCTTCTTAG+CGG 0.517356 tig0031599:+33200 Msa1447160:intergenic
TGAAGTTAAGGGACAATGGC+AGG 0.518383 tig0031599:+32578 Msa1447160:intergenic
ATCCTATGGGTGGGTTGTGA+TGG 0.519459 tig0031599:-32670 Msa1447160:CDS
TTTCAAAGAAGGGTCATACA+TGG 0.524726 tig0031599:+32921 Msa1447160:intergenic
CACGTCAGAATGACTTGCCT+AGG 0.525727 tig0031599:-32265 Msa1447160:CDS
TTTGCCAGTGGCTTCTGCTG+GGG 0.528979 tig0031599:-32851 Msa1447160:CDS
CAGCTCGGTCAGTTAAGGTC+TGG 0.530478 tig0031599:-32750 Msa1447160:CDS
CCTTCAAGGAGTTGCCAGCT+CGG 0.530770 tig0031599:-32765 Msa1447160:CDS
GCCATGCTGAAGCAGCTCAT+CGG 0.531549 tig0031599:-35791 Msa1447160:CDS
AATGCCAAATATATGGTGCT+TGG 0.531763 tig0031599:-32302 Msa1447160:CDS
AAACCACGTTTCCAAGCAAA+CGG 0.536760 tig0031599:+35947 Msa1447160:intergenic
ACTCCGTTTGCTTGGAAACG+TGG 0.538355 tig0031599:-35950 Msa1447160:five_prime_UTR
AGTTTGCGACCTGAAGTTAA+GGG 0.541286 tig0031599:+32567 Msa1447160:intergenic
CAAGCCACCGCGGTCAAGCA+TGG 0.544564 tig0031599:+32088 Msa1447160:intergenic
GCCTCGAAGAGATCGAAGCA+GGG 0.544882 tig0031599:-33190 Msa1447160:CDS
AGTCGTCCAGGAAACATGCC+TGG 0.549750 tig0031599:-32610 Msa1447160:CDS
ACCGATGAGCTGCTTCAGCA+TGG 0.550406 tig0031599:+35790 Msa1447160:intergenic
CAGTCAAATGTAGTGGCGCT+GGG 0.551715 tig0031599:+32449 Msa1447160:intergenic
AGAGCTATCTTCGAGGTCAA+AGG 0.555308 tig0031599:+33302 Msa1447160:intergenic
CCAGCAAGGAATTCCATTGA+CGG 0.555971 tig0031599:+33034 Msa1447160:intergenic
CATCTACAGAGCTATCTTCG+AGG 0.556179 tig0031599:+33295 Msa1447160:intergenic
TTAGCGGGTGGAGGCTTCAG+AGG 0.556937 tig0031599:+33216 Msa1447160:intergenic
AAGAATGGCTGAAGGTTCCT+GGG 0.558151 tig0031599:-32168 Msa1447160:CDS
CTTCGAGGCTTCTTAGCGGG+TGG 0.561487 tig0031599:+33204 Msa1447160:intergenic
CACCTAATAAGACCTGCAAA+TGG 0.562987 tig0031599:+32005 Msa1447160:intergenic
ATCGAAACAAATGAATCGGT+TGG 0.564495 tig0031599:-32212 Msa1447160:CDS
CCTTGAAGGATTGAGTTAGT+GGG 0.570394 tig0031599:+32779 Msa1447160:intergenic
CACACTCTAGCTGAGTATGA+TGG 0.574409 tig0031599:-32424 Msa1447160:CDS
GTTAAACCAGAGAGGAACGC+TGG 0.574971 tig0031599:+31967 Msa1447160:intergenic
GTGTGTGTTATTATTAGTAG+AGG 0.577401 tig0031599:-35853 Msa1447160:five_prime_UTR
TGACTGTTGTGGCCTTGTAA+TGG 0.580674 tig0031599:-33274 Msa1447160:CDS
TGGGTTATGGTGTAAAACCA+TGG 0.586647 tig0031599:+32964 Msa1447160:intergenic
GCTGTAGGGATGACAGTGAA+TGG 0.589049 tig0031599:-32718 Msa1447160:CDS
TGGTGCCGAATGGGAAGAAA+CGG 0.591767 tig0031599:-32141 Msa1447160:CDS
AAAGGTATTATAGGATAGCA+AGG 0.591838 tig0031599:+31851 Msa1447160:intergenic
TGCAGAGAATGACACTCTTG+TGG 0.591979 tig0031599:-32339 Msa1447160:CDS
AAGTCCCGCAAGAAAATCCA+TGG 0.594704 tig0031599:-32981 Msa1447160:CDS
TATACCATATTTGTGCTTTG+GGG 0.597702 tig0031599:-31763 Msa1447160:three_prime_UTR
ATTATTAGTAGAGGAAATCG+GGG 0.597850 tig0031599:-35844 Msa1447160:five_prime_UTR
TCATCCATGCTTGACCGCGG+TGG 0.597901 tig0031599:-32092 Msa1447160:CDS
GGTCGTTGCTGTAAGGTACA+AGG 0.600597 tig0031599:+32060 Msa1447160:intergenic
GCTGAAGGTTCCTGGGTGTG+TGG 0.600893 tig0031599:-32161 Msa1447160:CDS
TCATGCGTTCAGATCCAGAA+GGG 0.601959 tig0031599:-32519 Msa1447160:CDS
TGGTTACTTACAACATAGCA+AGG 0.602101 tig0031599:-32192 Msa1447160:CDS
GAGAATGACACTCTTGTGGA+AGG 0.607066 tig0031599:-32335 Msa1447160:CDS
ATGACTTGCCTAGGGAACAA+AGG 0.609468 tig0031599:-32256 Msa1447160:CDS
GGCTACAAGATCCTATGGGT+GGG 0.610734 tig0031599:-32679 Msa1447160:CDS
AGGCTACAAGATCCTATGGG+TGG 0.612217 tig0031599:-32680 Msa1447160:CDS
AAAGCTTTGAGAAGCCAGCA+AGG 0.612786 tig0031599:+33020 Msa1447160:intergenic
TGATGGTCAGATCATGCTTG+TGG 0.614839 tig0031599:-32407 Msa1447160:CDS
TTCCTATGATATGGCAACAG+GGG 0.616895 tig0031599:-32491 Msa1447160:CDS
TTATTAGTAGAGGAAATCGG+GGG 0.619979 tig0031599:-35843 Msa1447160:five_prime_UTR
GAGGGAAAACTAACCTGGGA+GGG 0.621021 tig0031599:+35663 Msa1447160:intergenic
GTGTGGTCAGTCAAATGTAG+TGG 0.622699 tig0031599:+32442 Msa1447160:intergenic
TTAAACCAGAGAGGAACGCT+GGG 0.625011 tig0031599:+31968 Msa1447160:intergenic
CTCCATCACAACCCACCCAT+AGG 0.626354 tig0031599:+32668 Msa1447160:intergenic
CAGACCTTAACTGACCGAGC+TGG 0.631524 tig0031599:+32751 Msa1447160:intergenic
AGAATATGAAGTTTATGACT+CGG 0.638363 tig0031599:-32647 Msa1447160:CDS
AATAAGACCTGCAAATGGCA+AGG 0.642534 tig0031599:+32010 Msa1447160:intergenic
TTTCCTATGATATGGCAACA+GGG 0.643758 tig0031599:-32492 Msa1447160:CDS
ACGTCAGAATGACTTGCCTA+GGG 0.644663 tig0031599:-32264 Msa1447160:CDS
AATGACACTCTTGTGGAAGG+AGG 0.644741 tig0031599:-32332 Msa1447160:CDS
TTCAGGCTACAAGATCCTAT+GGG 0.648233 tig0031599:-32683 Msa1447160:CDS
AGCAAGGAAAGAATGGCTGA+AGG 0.648548 tig0031599:-32176 Msa1447160:CDS
CCATTCGGCACCACACACCC+AGG 0.649604 tig0031599:+32151 Msa1447160:intergenic
ATTTCATCCATGCTTGACCG+CGG 0.649663 tig0031599:-32095 Msa1447160:CDS
CGAATGGGAAGAAACGGCAG+TGG 0.651054 tig0031599:-32135 Msa1447160:CDS
GTGGGCAGTGGTGATATAGA+CGG 0.653208 tig0031599:+32886 Msa1447160:intergenic
TTCATGCGTTCAGATCCAGA+AGG 0.658440 tig0031599:-32520 Msa1447160:CDS
AGCCACGTGTGTATGCATAT+GGG 0.660040 tig0031599:-32365 Msa1447160:CDS
GCTATCTTCGAGGTCAAAGG+AGG 0.661871 tig0031599:+33305 Msa1447160:intergenic
CCTCGAAGAGATCGAAGCAG+GGG 0.663964 tig0031599:-33189 Msa1447160:CDS
CTCCCATATGCATACACACG+TGG 0.665284 tig0031599:+32363 Msa1447160:intergenic
TACATACATAGAAGTTACGA+TGG 0.667085 tig0031599:+32803 Msa1447160:intergenic
AGCTCTGTAGATGACTGTTG+TGG 0.670937 tig0031599:-33285 Msa1447160:CDS
CATGCGTTCAGATCCAGAAG+GGG 0.671936 tig0031599:-32518 Msa1447160:CDS
GACCTGAAGTTAAGGGACAA+TGG 0.674409 tig0031599:+32574 Msa1447160:intergenic
TCCATTGACGGCATACAGAG+CGG 0.675929 tig0031599:+33046 Msa1447160:intergenic
CATCATACTCAGCTAGAGTG+TGG 0.675947 tig0031599:+32425 Msa1447160:intergenic
AAACGGCAGTGGATAGCATG+TGG 0.678505 tig0031599:-32124 Msa1447160:CDS
TATTAGTAGAGGAAATCGGG+GGG 0.696893 tig0031599:-35842 Msa1447160:five_prime_UTR
AGAGGGAAAACTAACCTGGG+AGG 0.703983 tig0031599:+35662 Msa1447150:intergenic
TCTACTCTGTTAAACCAGAG+AGG 0.707618 tig0031599:+31959 Msa1447150:intergenic
CAAGGAAAATCAAGCCACCG+CGG 0.733913 tig0031599:+32078 Msa1447150:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACATCAAAAATATAAAATT+GGG + tig0031599:32515-32534 Msa1447160:intergenic 10.0%
!! AACTTAATTAATTTAAAAGA+TGG + tig0031599:34052-34071 Msa1447160:intergenic 10.0%
!! ACATCAAAAATATAAAATTG+GGG + tig0031599:32514-32533 Msa1447160:intergenic 15.0%
!! GAACATCAAAAATATAAAAT+TGG + tig0031599:32516-32535 Msa1447160:intergenic 15.0%
!!! ACATAATTTTACATAAAATC+AGG - tig0031599:32602-32621 Msa1447160:CDS 15.0%
!!! CATAATTTTACATAAAATCA+GGG - tig0031599:32603-32622 Msa1447160:CDS 15.0%
!! AAAAATCTTTATAATGCAAA+CGG - tig0031599:33061-33080 Msa1447160:CDS 15.0%
!! TTATTTCAAAAAGAAGTAAA+TGG + tig0031599:33562-33581 Msa1447160:intergenic 15.0%
!!! AAACTAATGTTGATTTTTTA+AGG - tig0031599:33848-33867 Msa1447160:intron 15.0%
!!! AACTAATGTTGATTTTTTAA+GGG - tig0031599:33849-33868 Msa1447160:intron 15.0%
!! AAGTTATATAATTACACATA+CGG - tig0031599:34067-34086 Msa1447160:intron 15.0%
!! AATGGATAAACAAAAATATT+TGG + tig0031599:34400-34419 Msa1447160:intergenic 15.0%
!! TTATTATTAGTAGAGGAAAT+CGG - tig0031599:31890-31909 Msa1447160:three_prime_UTR 20.0%
!! ACAAAAAACTTACAGAAATT+AGG + tig0031599:32421-32440 Msa1447160:intergenic 20.0%
!! ATCAAAAATATAAAATTGGG+GGG + tig0031599:32512-32531 Msa1447160:intergenic 20.0%
!! CATCAAAAATATAAAATTGG+GGG + tig0031599:32513-32532 Msa1447160:intergenic 20.0%
!! ACAAACAAAAAACACAATTA+CGG + tig0031599:32828-32847 Msa1447160:intergenic 20.0%
!!! ATCGATTTTAAAACCTTATT+TGG - tig0031599:33099-33118 Msa1447160:CDS 20.0%
!!! TTGTTTTTGTTGACATTTTT+CGG - tig0031599:33231-33250 Msa1447160:CDS 20.0%
!!! GAAACTTTTAGTGAATTTTT+AGG - tig0031599:33375-33394 Msa1447160:intron 20.0%
!! TTGATTAAAATTGAGTTTGA+AGG - tig0031599:33681-33700 Msa1447160:intron 20.0%
!! TGATTAAAATTGAGTTTGAA+GGG - tig0031599:33682-33701 Msa1447160:intron 20.0%
!! TTCTAATCAAATTGAGATTT+GGG - tig0031599:33821-33840 Msa1447160:intron 20.0%
!! CATGAAATTATAGTGTATAA+AGG - tig0031599:33909-33928 Msa1447160:intron 20.0%
!!! CATTTTGAAAATGTCTATTT+TGG - tig0031599:33933-33952 Msa1447160:intron 20.0%
!! AGAGTAGATGAAAAATAATT+TGG - tig0031599:35792-35811 Msa1447160:CDS 20.0%
!! GAGTAGATGAAAAATAATTT+GGG - tig0031599:35793-35812 Msa1447160:CDS 20.0%
!!! TTTATATCACCTTTTATCAA+AGG + tig0031599:35906-35925 Msa1447160:intergenic 20.0%
! GATAGATAGTTTACTACTTA+CGG - tig0031599:31749-31768 Msa1447160:three_prime_UTR 25.0%
! TATTATTAGTAGAGGAAATC+GGG - tig0031599:31891-31910 Msa1447160:three_prime_UTR 25.0%
!! TTAGGAATTGTTGCATTTTA+GGG + tig0031599:32403-32422 Msa1447160:intergenic 25.0%
!! ATTAGGAATTGTTGCATTTT+AGG + tig0031599:32404-32423 Msa1447160:intergenic 25.0%
! TCAAAAATATAAAATTGGGG+GGG + tig0031599:32511-32530 Msa1447160:intergenic 25.0%
!!! CATTGTTGCTTATTTTCTAT+TGG - tig0031599:32540-32559 Msa1447160:CDS 25.0%
! TTACATAAAATCAGGGAAAA+TGG - tig0031599:32610-32629 Msa1447160:CDS 25.0%
!!! TTTTAGAGAGAACTAGTATA+CGG - tig0031599:32698-32717 Msa1447160:CDS 25.0%
!! ACTTAAAAGCATGCTATTTA+TGG + tig0031599:32756-32775 Msa1447160:intergenic 25.0%
! TTTGAATTGAGTATCATTTG+CGG - tig0031599:32847-32866 Msa1447160:CDS 25.0%
!! TTTAACATTTTTGCATTCCT+AGG - tig0031599:32939-32958 Msa1447160:CDS 25.0%
!! TTAACATTTTTGCATTCCTA+GGG - tig0031599:32940-32959 Msa1447160:CDS 25.0%
! TTTCGTTCTGTTTGATTATT+TGG - tig0031599:33158-33177 Msa1447160:CDS 25.0%
! AAGGGAAATGATTTAAATCT+AGG - tig0031599:33700-33719 Msa1447160:intron 25.0%
! AAAAATTGCATTAACAACCT+TGG + tig0031599:33741-33760 Msa1447160:intergenic 25.0%
!!! AAAACCACTTTTGTATTAGA+CGG + tig0031599:33764-33783 Msa1447160:intergenic 25.0%
! CTTCTAATCAAATTGAGATT+TGG - tig0031599:33820-33839 Msa1447160:intron 25.0%
! TCTAATCAAATTGAGATTTG+GGG - tig0031599:33822-33841 Msa1447160:intron 25.0%
! AAGTAGATTAATCTAGTGTA+TGG - tig0031599:34022-34041 Msa1447160:intron 25.0%
! TAGAAAAACCAACATTTACA+GGG + tig0031599:34358-34377 Msa1447160:intergenic 25.0%
! AAGTTATGGAACAAGAAATA+TGG - tig0031599:34599-34618 Msa1447160:intron 25.0%
!! TTTTCCTGAAGATTTATTTG+AGG - tig0031599:34627-34646 Msa1447160:intron 25.0%
! AGAATATGAAGTTTATGACT+CGG - tig0031599:35089-35108 Msa1447160:intron 25.0%
!! TGAAAAATAATTTGGGTTTG+TGG - tig0031599:35800-35819 Msa1447160:CDS 25.0%
!!! CCTTTTATCAAAGGTATTAT+AGG + tig0031599:35897-35916 Msa1447160:intergenic 25.0%
! CCTATAATACCTTTGATAAA+AGG - tig0031599:35894-35913 Msa1447160:five_prime_UTR 25.0%
! TTCTGTATTCAATAACTGAA+TGG - tig0031599:35938-35957 Msa1447160:five_prime_UTR 25.0%
! TTATACCATATTTGTGCTTT+GGG - tig0031599:35972-35991 Msa1447160:five_prime_UTR 25.0%
GATAGAAAGAGAAAGGAAAA+AGG - tig0031599:31855-31874 Msa1447160:three_prime_UTR 30.0%
! GTGTGTGTTATTATTAGTAG+AGG - tig0031599:31883-31902 Msa1447160:three_prime_UTR 30.0%
ATTATTAGTAGAGGAAATCG+GGG - tig0031599:31892-31911 Msa1447160:three_prime_UTR 30.0%
AAATGATTCACCAAAACTAG+AGG + tig0031599:32180-32199 Msa1447160:intergenic 30.0%
AAAATCAGGGAAAATGGAAT+TGG - tig0031599:32616-32635 Msa1447160:CDS 30.0%
GCTTAACGACAAGAAAAAAA+AGG + tig0031599:32724-32743 Msa1447160:intergenic 30.0%
TGAAATATTACCGCCAAATA+CGG - tig0031599:32793-32812 Msa1447160:CDS 30.0%
TTGAATTGAGTATCATTTGC+GGG - tig0031599:32848-32867 Msa1447160:CDS 30.0%
TCAACAAAAACAAAACAAGC+AGG + tig0031599:33224-33243 Msa1447160:intergenic 30.0%
TTCGGTAAAGATCAATTTAC+TGG - tig0031599:33249-33268 Msa1447160:CDS 30.0%
!!! ATTATCCTCCTTTTTTAAGG+AGG + tig0031599:33425-33444 Msa1447160:intergenic 30.0%
!!! GCAATTATCCTCCTTTTTTA+AGG + tig0031599:33428-33447 Msa1447160:intergenic 30.0%
!! GTAAATGGTATGTGCTATTT+AGG + tig0031599:33547-33566 Msa1447160:intergenic 30.0%
ACATTGAACATGTATATCGT+GGG - tig0031599:33615-33634 Msa1447160:intron 30.0%
! TTTTCCGTCTAATACAAAAG+TGG - tig0031599:33757-33776 Msa1447160:intron 30.0%
CTAATCAAATTGAGATTTGG+GGG - tig0031599:33823-33842 Msa1447160:intron 30.0%
AACCAAACATGCTACAAATA+TGG - tig0031599:33883-33902 Msa1447160:intron 30.0%
TACCATATTTGTAGCATGTT+TGG + tig0031599:33888-33907 Msa1447160:intergenic 30.0%
! TCTCTAATCTGATTTGACAA+AGG + tig0031599:33970-33989 Msa1447160:intergenic 30.0%
AAATCAGATTAGAGAGTTGA+TGG - tig0031599:33975-33994 Msa1447160:intron 30.0%
! AATCAGATTAGAGAGTTGAT+GGG - tig0031599:33976-33995 Msa1447160:intron 30.0%
AAGACATCAAAGTAAATGTC+AGG + tig0031599:34178-34197 Msa1447160:intergenic 30.0%
GATCAGGATAATTTATACCT+AGG + tig0031599:34220-34239 Msa1447160:intergenic 30.0%
TATAAATTATCCTGATCGCA+TGG - tig0031599:34223-34242 Msa1447160:intron 30.0%
ATAAATTATCCTGATCGCAT+GGG - tig0031599:34224-34243 Msa1447160:intron 30.0%
GTAGAAAAACCAACATTTAC+AGG + tig0031599:34359-34378 Msa1447160:intergenic 30.0%
!! TTGGTTTTTCTACTTGACAT+GGG - tig0031599:34366-34385 Msa1447160:intron 30.0%
! TTGTTTATCCATTTTGCAGA+TGG - tig0031599:34407-34426 Msa1447160:intron 30.0%
! TAAAACCATGGATTTTCTTG+CGG + tig0031599:34763-34782 Msa1447160:intergenic 30.0%
!! ATTCACATTTTCATGGGTTA+TGG + tig0031599:34788-34807 Msa1447160:intergenic 30.0%
! TCCTGAATTCACATTTTCAT+GGG + tig0031599:34794-34813 Msa1447160:intergenic 30.0%
!! TTAGTTTGCTTTCTTGACAT+TGG - tig0031599:34910-34929 Msa1447160:intron 30.0%
TACATACATAGAAGTTACGA+TGG + tig0031599:34936-34955 Msa1447160:intergenic 30.0%
AATGGAAATTCAATCAGTTC+AGG - tig0031599:35036-35055 Msa1447160:intron 30.0%
TAGACAGAATGCCAAATATA+TGG - tig0031599:35427-35446 Msa1447160:intron 30.0%
TGAGATCGAAACAAATGAAT+CGG - tig0031599:35520-35539 Msa1447160:intron 30.0%
!! AAAGGTATTATAGGATAGCA+AGG + tig0031599:35888-35907 Msa1447160:intergenic 30.0%
CTTATACCATATTTGTGCTT+TGG - tig0031599:35971-35990 Msa1447160:five_prime_UTR 30.0%
TATACCATATTTGTGCTTTG+GGG - tig0031599:35973-35992 Msa1447160:five_prime_UTR 30.0%
AAAACAAAACTCCGTTTGCT+TGG - tig0031599:31778-31797 Msa1447160:three_prime_UTR 35.0%
GAGTAGAGATAGAAAGAGAA+AGG - tig0031599:31848-31867 Msa1447160:three_prime_UTR 35.0%
TTATTAGTAGAGGAAATCGG+GGG - tig0031599:31893-31912 Msa1447160:three_prime_UTR 35.0%
AGGAAGATAGTTTGATGAGA+AGG + tig0031599:32044-32063 Msa1447160:intergenic 35.0%
AAAGAGAGAAAGAGAAGAGA+GGG + tig0031599:32094-32113 Msa1447160:intergenic 35.0%
AAAAGAGAGAAAGAGAAGAG+AGG + tig0031599:32095-32114 Msa1447160:intergenic 35.0%
! ATTTTTCCTTTTGCATCGCA+CGG - tig0031599:32149-32168 Msa1447160:CDS 35.0%
TTGAAGCGAATTAAGCAGTT+AGG - tig0031599:32245-32264 Msa1447160:CDS 35.0%
ATGCTTCTAATTCCATTCCA+AGG - tig0031599:32374-32393 Msa1447160:CDS 35.0%
CATCTTTGCAACCACAATTA+CGG + tig0031599:33027-33046 Msa1447160:intergenic 35.0%
AAAAAAGGAGGATAATTGCG+TGG - tig0031599:33429-33448 Msa1447160:intron 35.0%
TACATTCTAACCATTCGTTC+AGG - tig0031599:33463-33482 Msa1447160:intron 35.0%
CACATTGAACATGTATATCG+TGG - tig0031599:33614-33633 Msa1447160:intron 35.0%
!!! AAATGTCTATTTTGGCACCT+AGG - tig0031599:33941-33960 Msa1447160:intron 35.0%
!!! AATGTCTATTTTGGCACCTA+GGG - tig0031599:33942-33961 Msa1447160:intron 35.0%
!! ATCAGATTAGAGAGTTGATG+GGG - tig0031599:33977-33996 Msa1447160:intron 35.0%
AGGATTCACAACAGATAGAA+AGG + tig0031599:34327-34346 Msa1447160:intergenic 35.0%
!!! GTTGGTTTTTCTACTTGACA+TGG - tig0031599:34365-34384 Msa1447160:intron 35.0%
! TGGTTTTTCTACTTGACATG+GGG - tig0031599:34367-34386 Msa1447160:intron 35.0%
! CTGGAAAGTCTCATAGTTTT+AGG - tig0031599:34488-34507 Msa1447160:intron 35.0%
ATCCAGTACAAGTGAAGTTA+TGG - tig0031599:34585-34604 Msa1447160:intron 35.0%
TTCCATAACTTCACTTGTAC+TGG + tig0031599:34590-34609 Msa1447160:intergenic 35.0%
ACAGCCTCAAATAAATCTTC+AGG + tig0031599:34634-34653 Msa1447160:intergenic 35.0%
! AAGCTTTTCTAAGCAATGTG+CGG - tig0031599:34732-34751 Msa1447160:intron 35.0%
! AAAACCATGGATTTTCTTGC+GGG + tig0031599:34762-34781 Msa1447160:intergenic 35.0%
ACCCATGAAAATGTGAATTC+AGG - tig0031599:34790-34809 Msa1447160:intron 35.0%
! CTCCTGAATTCACATTTTCA+TGG + tig0031599:34795-34814 Msa1447160:intergenic 35.0%
TTTCAAAGAAGGGTCATACA+TGG + tig0031599:34818-34837 Msa1447160:intergenic 35.0%
! ATGACCCTTCTTTGAAAAAG+TGG - tig0031599:34821-34840 Msa1447160:intron 35.0%
!!! GATGCCACTTTTTCAAAGAA+GGG + tig0031599:34828-34847 Msa1447160:intergenic 35.0%
!!! TGATGCCACTTTTTCAAAGA+AGG + tig0031599:34829-34848 Msa1447160:intergenic 35.0%
GGCAAAACAATCAACTTTGT+GGG + tig0031599:34871-34890 Msa1447160:intergenic 35.0%
TGGCAAAACAATCAACTTTG+TGG + tig0031599:34872-34891 Msa1447160:intergenic 35.0%
!! AAAGTTGATTGTTTTGCCAG+TGG - tig0031599:34873-34892 Msa1447160:intron 35.0%
ATCTGAACGCATGAAGTATA+GGG + tig0031599:35211-35230 Msa1447160:intergenic 35.0%
TTTCCTATGATATGGCAACA+GGG - tig0031599:35244-35263 Msa1447160:intron 35.0%
AATGCCAAATATATGGTGCT+TGG - tig0031599:35434-35453 Msa1447160:intron 35.0%
AAGTCCAAGCACCATATATT+TGG + tig0031599:35441-35460 Msa1447160:intergenic 35.0%
! ATATGGTGCTTGGACTTTTA+TGG - tig0031599:35444-35463 Msa1447160:intron 35.0%
ATCGAAACAAATGAATCGGT+TGG - tig0031599:35524-35543 Msa1447160:intron 35.0%
TGGTTACTTACAACATAGCA+AGG - tig0031599:35544-35563 Msa1447160:intron 35.0%
ACAACATAGCAAGGAAAGAA+TGG - tig0031599:35553-35572 Msa1447160:intron 35.0%
TTTGGGGACAAAAAATTGGA+TGG - tig0031599:35989-36008 Msa1447160:five_prime_UTR 35.0%
AAACCACGTTTCCAAGCAAA+CGG + tig0031599:31792-31811 Msa1447160:intergenic 40.0%
TTACACGAGCGGGTAAAAAA+AGG - tig0031599:31811-31830 Msa1447160:three_prime_UTR 40.0%
AGCGGGTAAAAAAAGGAAGA+AGG - tig0031599:31818-31837 Msa1447160:three_prime_UTR 40.0%
TATTAGTAGAGGAAATCGGG+GGG - tig0031599:31894-31913 Msa1447160:three_prime_UTR 40.0%
! AGAAGGTTGCTGTTGAAGAA+TGG + tig0031599:32027-32046 Msa1447160:intergenic 40.0%
AAGAGAGGGAAAACTAACCT+GGG + tig0031599:32080-32099 Msa1447160:intergenic 40.0%
! TTTTTCCTTTTGCATCGCAC+GGG - tig0031599:32150-32169 Msa1447160:CDS 40.0%
AGCGAATTAAGCAGTTAGGT+AGG - tig0031599:32249-32268 Msa1447160:CDS 40.0%
AGCAGTTAGGTAGGTAAGTT+AGG - tig0031599:32258-32277 Msa1447160:CDS 40.0%
TGTATGTAATGCGTGACTGT+GGG - tig0031599:32298-32317 Msa1447160:CDS 40.0%
!!! ATTTTAGGGCATCCTTGGAA+TGG + tig0031599:32389-32408 Msa1447160:intergenic 40.0%
ATCAGGGAAAATGGAATTGG+TGG - tig0031599:32619-32638 Msa1447160:CDS 40.0%
!! GAATTGGTGGACTTGAATGT+TGG - tig0031599:32632-32651 Msa1447160:CDS 40.0%
GAACTAGGTAGAATCGCAAT+GGG - tig0031599:32893-32912 Msa1447160:CDS 40.0%
CATCTCATCCAAGTACTCTT+GGG - tig0031599:32998-33017 Msa1447160:CDS 40.0%
! AGCTCATTTGCTGCCAAATA+AGG + tig0031599:33115-33134 Msa1447160:intergenic 40.0%
AGCTTCTCAAAGATCGTTGT+CGG - tig0031599:33131-33150 Msa1447160:CDS 40.0%
CTTTAATCACGTTCCTTGTG+TGG - tig0031599:33332-33351 Msa1447160:intron 40.0%
CATATCAACTTGACCACACA+AGG + tig0031599:33348-33367 Msa1447160:intergenic 40.0%
TGTGTCCTCCTCCTTAAAAA+AGG - tig0031599:33414-33433 Msa1447160:intron 40.0%
!!! ATCCTCCTTTTTTAAGGAGG+AGG + tig0031599:33422-33441 Msa1447160:intergenic 40.0%
GGTACTTTACTCTAACACCA+AGG - tig0031599:33721-33740 Msa1447160:intron 40.0%
TGATTTGACAAAGGTTCCCT+AGG + tig0031599:33961-33980 Msa1447160:intergenic 40.0%
AGCTTACATGCAACATTCCT+AGG - tig0031599:34200-34219 Msa1447160:intron 40.0%
TGGGTTATGGTGTAAAACCA+TGG + tig0031599:34775-34794 Msa1447160:intergenic 40.0%
CCTTGAAGGATTGAGTTAGT+GGG + tig0031599:34960-34979 Msa1447160:intergenic 40.0%
TCCTTGAAGGATTGAGTTAG+TGG + tig0031599:34961-34980 Msa1447160:intergenic 40.0%
TTCAGGCTACAAGATCCTAT+GGG - tig0031599:35053-35072 Msa1447160:intron 40.0%
!! ATGACTCGGTGAAAAACTCT+TGG - tig0031599:35103-35122 Msa1447160:intron 40.0%
AGTTTGCGACCTGAAGTTAA+GGG + tig0031599:35172-35191 Msa1447160:intergenic 40.0%
GATCTGAACGCATGAAGTAT+AGG + tig0031599:35212-35231 Msa1447160:intergenic 40.0%
! AGGGGTTGTTTCCTATGATA+TGG - tig0031599:35236-35255 Msa1447160:intron 40.0%
GTTTCCTATGATATGGCAAC+AGG - tig0031599:35243-35262 Msa1447160:intron 40.0%
TTCCTATGATATGGCAACAG+GGG - tig0031599:35245-35264 Msa1447160:intron 40.0%
AATAAGACCTGCAAATGGCA+AGG + tig0031599:35729-35748 Msa1447160:intergenic 40.0%
!! TGCCATTTGCAGGTCTTATT+AGG - tig0031599:35729-35748 Msa1447160:CDS 40.0%
CACCTAATAAGACCTGCAAA+TGG + tig0031599:35734-35753 Msa1447160:intergenic 40.0%
TCTACTCTGTTAAACCAGAG+AGG + tig0031599:35780-35799 Msa1447160:intergenic 40.0%
TTGTCCCCAAAGCACAAATA+TGG + tig0031599:35980-35999 Msa1447160:intergenic 40.0%
!! GTGCTTTGGGGACAAAAAAT+TGG - tig0031599:35985-36004 Msa1447160:five_prime_UTR 40.0%
!! GAAACGTGGTTTTACACGAG+CGG - tig0031599:31800-31819 Msa1447160:three_prime_UTR 45.0%
!! AAACGTGGTTTTACACGAGC+GGG - tig0031599:31801-31820 Msa1447160:three_prime_UTR 45.0%
GAAGAGAGGGAAAACTAACC+TGG + tig0031599:32081-32100 Msa1447160:intergenic 45.0%
CTGTATGTAATGCGTGACTG+TGG - tig0031599:32297-32316 Msa1447160:CDS 45.0%
!!! GTTGCATTTTAGGGCATCCT+TGG + tig0031599:32394-32413 Msa1447160:intergenic 45.0%
TGACAATCTCCTTGATCCTG+TGG - tig0031599:32564-32583 Msa1447160:CDS 45.0%
AGAGACTAATCCCTCGAACT+AGG - tig0031599:32878-32897 Msa1447160:CDS 45.0%
TGCGATTCTACCTAGTTCGA+GGG + tig0031599:32891-32910 Msa1447160:intergenic 45.0%
TTGCGATTCTACCTAGTTCG+AGG + tig0031599:32892-32911 Msa1447160:intergenic 45.0%
CGAACTAGGTAGAATCGCAA+TGG - tig0031599:32892-32911 Msa1447160:CDS 45.0%
TTAACCAGAGGTTTAGCCCT+AGG + tig0031599:32959-32978 Msa1447160:intergenic 45.0%
AAACCTCTGGTTAACCTGGA+AGG - tig0031599:32965-32984 Msa1447160:CDS 45.0%
GTACTTGGATGAGATGGAGA+GGG + tig0031599:32994-33013 Msa1447160:intergenic 45.0%
AGTACTTGGATGAGATGGAG+AGG + tig0031599:32995-33014 Msa1447160:intergenic 45.0%
!! CCAAGAGTACTTGGATGAGA+TGG + tig0031599:33000-33019 Msa1447160:intergenic 45.0%
CCATCTCATCCAAGTACTCT+TGG - tig0031599:32997-33016 Msa1447160:CDS 45.0%
TTTGTCATAGCGTCGTGCAT+AGG - tig0031599:33287-33306 Msa1447160:CDS 45.0%
GTCCTCCTCCTTAAAAAAGG+AGG - tig0031599:33417-33436 Msa1447160:intron 45.0%
TTGATGGGGAAAGTTCTACG+TGG - tig0031599:33991-34010 Msa1447160:intron 45.0%
ACATTTACAGGGACATCAGC+AGG + tig0031599:34347-34366 Msa1447160:intergenic 45.0%
GCTGATGTCCCTGTAAATGT+TGG - tig0031599:34347-34366 Msa1447160:intron 45.0%
AAGGAGGTCCATCTGCAAAA+TGG + tig0031599:34418-34437 Msa1447160:intergenic 45.0%
AGAGCTATCTTCGAGGTCAA+AGG + tig0031599:34437-34456 Msa1447160:intergenic 45.0%
CATCTACAGAGCTATCTTCG+AGG + tig0031599:34444-34463 Msa1447160:intergenic 45.0%
AGCTCTGTAGATGACTGTTG+TGG - tig0031599:34451-34470 Msa1447160:intron 45.0%
!! TGACTGTTGTGGCCTTGTAA+TGG - tig0031599:34462-34481 Msa1447160:intron 45.0%
ACTTTCCAGCTGCCATTACA+AGG + tig0031599:34477-34496 Msa1447160:intergenic 45.0%
ATCTCTTCGAGGCTTCTTAG+CGG + tig0031599:34539-34558 Msa1447160:intergenic 45.0%
CCAGCAAGGAATTCCATTGA+CGG + tig0031599:34705-34724 Msa1447160:intergenic 45.0%
!! AAAGCTTTGAGAAGCCAGCA+AGG + tig0031599:34719-34738 Msa1447160:intergenic 45.0%
AAGTCCCGCAAGAAAATCCA+TGG - tig0031599:34755-34774 Msa1447160:intron 45.0%
ACAATCAACTTTGTGGGCAG+TGG + tig0031599:34865-34884 Msa1447160:intergenic 45.0%
CCCACTAACTCAATCCTTCA+AGG - tig0031599:34957-34976 Msa1447160:intron 45.0%
GTTCAGGCTACAAGATCCTA+TGG - tig0031599:35052-35071 Msa1447160:intron 45.0%
AAAAACTCTTGGAGTCGTCC+AGG - tig0031599:35114-35133 Msa1447160:intron 45.0%
ATACTTCCAGGCATGTTTCC+TGG + tig0031599:35135-35154 Msa1447160:intergenic 45.0%
AATGGCAGGTTCATACTTCC+AGG + tig0031599:35147-35166 Msa1447160:intergenic 45.0%
TGAAGTTAAGGGACAATGGC+AGG + tig0031599:35161-35180 Msa1447160:intergenic 45.0%
TGCCATTGTCCCTTAACTTC+AGG - tig0031599:35160-35179 Msa1447160:intron 45.0%
GACCTGAAGTTAAGGGACAA+TGG + tig0031599:35165-35184 Msa1447160:intergenic 45.0%
CAGTTTGCGACCTGAAGTTA+AGG + tig0031599:35173-35192 Msa1447160:intergenic 45.0%
TTCATGCGTTCAGATCCAGA+AGG - tig0031599:35216-35235 Msa1447160:intron 45.0%
TCATGCGTTCAGATCCAGAA+GGG - tig0031599:35217-35236 Msa1447160:intron 45.0%
TCATAGGAAACAACCCCTTC+TGG + tig0031599:35234-35253 Msa1447160:intergenic 45.0%
AACCCCTGTTGCCATATCAT+AGG + tig0031599:35250-35269 Msa1447160:intergenic 45.0%
ATGATATGGCAACAGGGGTT+TGG - tig0031599:35250-35269 Msa1447160:intron 45.0%
GTGTGGTCAGTCAAATGTAG+TGG + tig0031599:35297-35316 Msa1447160:intergenic 45.0%
CATCATACTCAGCTAGAGTG+TGG + tig0031599:35314-35333 Msa1447160:intergenic 45.0%
CACACTCTAGCTGAGTATGA+TGG - tig0031599:35312-35331 Msa1447160:intron 45.0%
TGATGGTCAGATCATGCTTG+TGG - tig0031599:35329-35348 Msa1447160:intron 45.0%
GATGGTCAGATCATGCTTGT+GGG - tig0031599:35330-35349 Msa1447160:intron 45.0%
AGCCACGTGTGTATGCATAT+GGG - tig0031599:35371-35390 Msa1447160:intron 45.0%
TGCAGAGAATGACACTCTTG+TGG - tig0031599:35397-35416 Msa1447160:intron 45.0%
GAGAATGACACTCTTGTGGA+AGG - tig0031599:35401-35420 Msa1447160:intron 45.0%
AATGACACTCTTGTGGAAGG+AGG - tig0031599:35404-35423 Msa1447160:intron 45.0%
! ACGTCAGAATGACTTGCCTA+GGG - tig0031599:35472-35491 Msa1447160:intron 45.0%
! ATGACTTGCCTAGGGAACAA+AGG - tig0031599:35480-35499 Msa1447160:intron 45.0%
AGCAAGGAAAGAATGGCTGA+AGG - tig0031599:35560-35579 Msa1447160:intron 45.0%
AAAGAATGGCTGAAGGTTCC+TGG - tig0031599:35567-35586 Msa1447160:intron 45.0%
AAGAATGGCTGAAGGTTCCT+GGG - tig0031599:35568-35587 Msa1447160:intron 45.0%
ATTTCATCCATGCTTGACCG+CGG - tig0031599:35641-35660 Msa1447160:intron 45.0%
AAGACGAGCAAAAAAGTGGC+AGG + tig0031599:35700-35719 Msa1447160:intergenic 45.0%
CCACAAGACGAGCAAAAAAG+TGG + tig0031599:35704-35723 Msa1447160:intergenic 45.0%
!!! CCACTTTTTTGCTCGTCTTG+TGG - tig0031599:35701-35720 Msa1447160:CDS 45.0%
TTAAACCAGAGAGGAACGCT+GGG + tig0031599:35771-35790 Msa1447160:intergenic 45.0%
!! AAATAAATAAAAGAATAATT+GGG + tig0031599:32342-32361 Msa1447160:intergenic 5.0%
!! TAAATAAATAAAAGAATAAT+TGG + tig0031599:32343-32362 Msa1447160:intergenic 5.0%
ACTCCGTTTGCTTGGAAACG+TGG - tig0031599:31786-31805 Msa1447160:three_prime_UTR 50.0%
GAGGGAAAACTAACCTGGGA+GGG + tig0031599:32076-32095 Msa1447160:intergenic 50.0%
AGAGGGAAAACTAACCTGGG+AGG + tig0031599:32077-32096 Msa1447160:intergenic 50.0%
!! CACGGGTAGACCTCTAGTTT+TGG - tig0031599:32167-32186 Msa1447160:CDS 50.0%
CAATCTCCTTGATCCTGTGG+TGG - tig0031599:32567-32586 Msa1447160:CDS 50.0%
TCCTTGATCCTGTGGTGGTT+TGG - tig0031599:32572-32591 Msa1447160:CDS 50.0%
CCTTGATCCTGTGGTGGTTT+GGG - tig0031599:32573-32592 Msa1447160:CDS 50.0%
! ATCCTGTGGTGGTTTGGGTT+TGG - tig0031599:32578-32597 Msa1447160:CDS 50.0%
TACCAAACCCAAACCACCAC+AGG + tig0031599:32583-32602 Msa1447160:intergenic 50.0%
ACCGCCAAATACGGCTGATT+TGG - tig0031599:32802-32821 Msa1447160:CDS 50.0%
GCCAAATCAGCCGTATTTGG+CGG + tig0031599:32806-32825 Msa1447160:intergenic 50.0%
ACGGCCAAATCAGCCGTATT+TGG + tig0031599:32809-32828 Msa1447160:intergenic 50.0%
CATTCCTAGGGCTAAACCTC+TGG - tig0031599:32952-32971 Msa1447160:CDS 50.0%
GGCTAAACCTCTGGTTAACC+TGG - tig0031599:32961-32980 Msa1447160:CDS 50.0%
CTACCTTCCAGGTTAACCAG+AGG + tig0031599:32971-32990 Msa1447160:intergenic 50.0%
CTCATCCAAGTACTCTTGGG+TGG - tig0031599:33001-33020 Msa1447160:CDS 50.0%
CTAACCATTCGTTCAGGCTC+AGG - tig0031599:33469-33488 Msa1447160:intron 50.0%
AGTACCTGAGCCTGAACGAA+TGG + tig0031599:33476-33495 Msa1447160:intergenic 50.0%
GCTATCTTCGAGGTCAAAGG+AGG + tig0031599:34434-34453 Msa1447160:intergenic 50.0%
TCTCTTCGAGGCTTCTTAGC+GGG + tig0031599:34538-34557 Msa1447160:intergenic 50.0%
AAGCGGAAAAACGCGGCAAT+GGG + tig0031599:34670-34689 Msa1447160:intergenic 50.0%
TCCATTGACGGCATACAGAG+CGG + tig0031599:34693-34712 Msa1447160:intergenic 50.0%
CCGTCAATGGAATTCCTTGC+TGG - tig0031599:34702-34721 Msa1447160:intron 50.0%
GTGGGCAGTGGTGATATAGA+CGG + tig0031599:34853-34872 Msa1447160:intergenic 50.0%
! TTTTGCCAGTGGCTTCTGCT+GGG - tig0031599:34884-34903 Msa1447160:intron 50.0%
GCTGTAGGGATGACAGTGAA+TGG - tig0031599:35018-35037 Msa1447160:intron 50.0%
AGGCTACAAGATCCTATGGG+TGG - tig0031599:35056-35075 Msa1447160:intron 50.0%
GGCTACAAGATCCTATGGGT+GGG - tig0031599:35057-35076 Msa1447160:intron 50.0%
!! ATCCTATGGGTGGGTTGTGA+TGG - tig0031599:35066-35085 Msa1447160:intron 50.0%
CATGCGTTCAGATCCAGAAG+GGG - tig0031599:35218-35237 Msa1447160:intron 50.0%
CAGTCAAATGTAGTGGCGCT+GGG + tig0031599:35290-35309 Msa1447160:intergenic 50.0%
TCAGTCAAATGTAGTGGCGC+TGG + tig0031599:35291-35310 Msa1447160:intergenic 50.0%
CAGCCACGTGTGTATGCATA+TGG - tig0031599:35370-35389 Msa1447160:intron 50.0%
CTCCCATATGCATACACACG+TGG + tig0031599:35376-35395 Msa1447160:intergenic 50.0%
! CACGTCAGAATGACTTGCCT+AGG - tig0031599:35471-35490 Msa1447160:intron 50.0%
TGAGCAAGCCTTTGTTCCCT+AGG + tig0031599:35491-35510 Msa1447160:intergenic 50.0%
! TGGTGCCGAATGGGAAGAAA+CGG - tig0031599:35595-35614 Msa1447160:intron 50.0%
! CACTGCCGTTTCTTCCCATT+CGG + tig0031599:35603-35622 Msa1447160:intergenic 50.0%
AAACGGCAGTGGATAGCATG+TGG - tig0031599:35612-35631 Msa1447160:intron 50.0%
CAAGGAAAATCAAGCCACCG+CGG + tig0031599:35661-35680 Msa1447160:intergenic 50.0%
GGTCGTTGCTGTAAGGTACA+AGG + tig0031599:35679-35698 Msa1447160:intergenic 50.0%
! TGTGGTTCCTTGCCATTTGC+AGG - tig0031599:35719-35738 Msa1447160:CDS 50.0%
GTTAAACCAGAGAGGAACGC+TGG + tig0031599:35772-35791 Msa1447160:intergenic 50.0%
CGCACGGGCGATTGAGTATA+TGG - tig0031599:31727-31746 Msa1447160:three_prime_UTR 55.0%
TAGTAGAGGAAATCGGGGGG+AGG - tig0031599:31897-31916 Msa1447160:three_prime_UTR 55.0%
AGTAGAGGAAATCGGGGGGA+GGG - tig0031599:31898-31917 Msa1447160:three_prime_UTR 55.0%
GCCATGCTGAAGCAGCTCAT+CGG - tig0031599:31945-31964 Msa1447160:three_prime_UTR 55.0%
ACCGATGAGCTGCTTCAGCA+TGG + tig0031599:31949-31968 Msa1447160:intergenic 55.0%
TCCTTCAACATCACCCTCCC+AGG - tig0031599:32060-32079 Msa1447160:three_prime_UTR 55.0%
ACCTGGGAGGGTGATGTTGA+AGG + tig0031599:32064-32083 Msa1447160:intergenic 55.0%
GTCTACCCGTGCGATGCAAA+AGG + tig0031599:32158-32177 Msa1447160:intergenic 55.0%
CCCAAACCACCACAGGATCA+AGG + tig0031599:32576-32595 Msa1447160:intergenic 55.0%
!! TACGGCCACCCAAGAGTACT+TGG + tig0031599:33009-33028 Msa1447160:intergenic 55.0%
CTCTTGGGTGGCCGTAATTG+TGG - tig0031599:33013-33032 Msa1447160:CDS 55.0%
!! TGTGGCCTTGTAATGGCAGC+TGG - tig0031599:34469-34488 Msa1447160:intron 55.0%
AGCCTCGAAGAGATCGAAGC+AGG - tig0031599:34545-34564 Msa1447160:intron 55.0%
GCCTCGAAGAGATCGAAGCA+GGG - tig0031599:34546-34565 Msa1447160:intron 55.0%
CCTCGAAGAGATCGAAGCAG+GGG - tig0031599:34547-34566 Msa1447160:intron 55.0%
CGAAGCAGGGGCAAATCATC+AGG - tig0031599:34559-34578 Msa1447160:intron 55.0%
GAAGCGGAAAAACGCGGCAA+TGG + tig0031599:34671-34690 Msa1447160:intergenic 55.0%
AGAGCGGAAGCGGAAAAACG+CGG + tig0031599:34677-34696 Msa1447160:intergenic 55.0%
TCCGCTCTGTATGCCGTCAA+TGG - tig0031599:34689-34708 Msa1447160:intron 55.0%
! GTTTTGCCAGTGGCTTCTGC+TGG - tig0031599:34883-34902 Msa1447160:intron 55.0%
TTTGCCAGTGGCTTCTGCTG+GGG - tig0031599:34885-34904 Msa1447160:intron 55.0%
CCTTCAAGGAGTTGCCAGCT+CGG - tig0031599:34971-34990 Msa1447160:intron 55.0%
GTTGCCAGCTCGGTCAGTTA+AGG - tig0031599:34981-35000 Msa1447160:intron 55.0%
CAGACCTTAACTGACCGAGC+TGG + tig0031599:34988-35007 Msa1447160:intergenic 55.0%
CAGCTCGGTCAGTTAAGGTC+TGG - tig0031599:34986-35005 Msa1447160:intron 55.0%
TCTGGTCTCGCGTTGCTGTA+GGG - tig0031599:35004-35023 Msa1447160:intron 55.0%
CTCCATCACAACCCACCCAT+AGG + tig0031599:35071-35090 Msa1447160:intergenic 55.0%
AGTCGTCCAGGAAACATGCC+TGG - tig0031599:35126-35145 Msa1447160:intron 55.0%
CGAATGGGAAGAAACGGCAG+TGG - tig0031599:35601-35620 Msa1447160:intron 55.0%
AGTGGCAGGTCGTTGCTGTA+AGG + tig0031599:35686-35705 Msa1447160:intergenic 55.0%
CAGAGAGGAACGCTGGGATT+AGG + tig0031599:35765-35784 Msa1447160:intergenic 55.0%
CTAATCCCAGCGTTCCTCTC+TGG - tig0031599:35763-35782 Msa1447160:CDS 55.0%
GTAGAGGAAATCGGGGGGAG+GGG - tig0031599:31899-31918 Msa1447160:three_prime_UTR 60.0%
TAGAGGAAATCGGGGGGAGG+GGG - tig0031599:31900-31919 Msa1447160:three_prime_UTR 60.0%
!! GGGGGCATTAGCGCATGGAA+GGG - tig0031599:31919-31938 Msa1447160:three_prime_UTR 60.0%
GCATTAGCGCATGGAAGGGC+TGG - tig0031599:31923-31942 Msa1447160:three_prime_UTR 60.0%
GATGGAGAGGGCTACCTTCC+AGG + tig0031599:32982-33001 Msa1447160:intergenic 60.0%
CAGACTGAGCCCATGCGATC+AGG + tig0031599:34236-34255 Msa1447160:intergenic 60.0%
! TTAGCGGGTGGAGGCTTCAG+AGG + tig0031599:34523-34542 Msa1447160:intergenic 60.0%
CTTCGAGGCTTCTTAGCGGG+TGG + tig0031599:34535-34554 Msa1447160:intergenic 60.0%
CCCCTGCTTCGATCTCTTCG+AGG + tig0031599:34550-34569 Msa1447160:intergenic 60.0%
GACGGCATACAGAGCGGAAG+CGG + tig0031599:34687-34706 Msa1447160:intergenic 60.0%
TTGCCAGTGGCTTCTGCTGG+GGG - tig0031599:34886-34905 Msa1447160:intron 60.0%
AAACCCCCAGCAGAAGCCAC+TGG + tig0031599:34892-34911 Msa1447160:intergenic 60.0%
CCGAGCTGGCAACTCCTTGA+AGG + tig0031599:34974-34993 Msa1447160:intergenic 60.0%
GTCTGGTCTCGCGTTGCTGT+AGG - tig0031599:35003-35022 Msa1447160:intron 60.0%
GCTGAAGGTTCCTGGGTGTG+TGG - tig0031599:35575-35594 Msa1447160:intron 60.0%
! CTGGGTGTGTGGTGCCGAAT+GGG - tig0031599:35586-35605 Msa1447160:intron 60.0%
TCATCCATGCTTGACCGCGG+TGG - tig0031599:35644-35663 Msa1447160:intron 60.0%
AGAGGAAATCGGGGGGAGGG+GGG - tig0031599:31901-31920 Msa1447160:three_prime_UTR 65.0%
!! GGGGGGCATTAGCGCATGGA+AGG - tig0031599:31918-31937 Msa1447160:three_prime_UTR 65.0%
! CGAGGCTTCTTAGCGGGTGG+AGG + tig0031599:34532-34551 Msa1447160:intergenic 65.0%
CCATTCGGCACCACACACCC+AGG + tig0031599:35588-35607 Msa1447160:intergenic 65.0%
! CCTGGGTGTGTGGTGCCGAA+TGG - tig0031599:35585-35604 Msa1447160:intron 65.0%
CAAGCCACCGCGGTCAAGCA+TGG + tig0031599:35651-35670 Msa1447160:intergenic 65.0%
!! GGGAGGGGGGCATTAGCGCA+TGG - tig0031599:31914-31933 Msa1447160:three_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
tig0031599 gene 31726 36032 31726 ID=Msa1447160;Name=Msa1447160
tig0031599 mRNA 31726 36032 31726 ID=Msa1447160-mRNA-1;Parent=Msa1447160;Name=Msa1447160-mRNA-1;_AED=0.00;_eAED=0.00;_QI=207|1|1|1|1|1|2|361|464
tig0031599 exon 31726 33332 31726 ID=Msa1447160-mRNA-1:exon:15766;Parent=Msa1447160-mRNA-1
tig0031599 exon 35677 36032 35677 ID=Msa1447160-mRNA-1:exon:15765;Parent=Msa1447160-mRNA-1
tig0031599 five_prime_UTR 35826 36032 35826 ID=Msa1447160-mRNA-1:five_prime_utr;Parent=Msa1447160-mRNA-1
tig0031599 CDS 35677 35825 35677 ID=Msa1447160-mRNA-1:cds;Parent=Msa1447160-mRNA-1
tig0031599 CDS 32087 33332 32087 ID=Msa1447160-mRNA-1:cds;Parent=Msa1447160-mRNA-1
tig0031599 three_prime_UTR 31726 32086 31726 ID=Msa1447160-mRNA-1:three_prime_utr;Parent=Msa1447160-mRNA-1
Gene Sequence

>Msa1447160

ATGGAAGGGCTGGCCATGCTGAAGCAGCTCATCGGTCAGCTTCAGCAACTTCTCGACTCTCATCATCATTCTTCTTCTTCTTCTTCTTCTTCCATTCTTCAACAGCAACCTTCTCATCAAACTATCTTCCTTCAACATCACCCTCCCAGATGGACCTCCTTTGACCTCGAAGATAGCTCTGTAGATGACTGTTGTGGCCTTGTAATGGCAGCTGGAAAGTCTCATAGTTTTAGGATGTCAGAGCCTCTGAAGCCTCCACCCGCTAAGAAGCCTCGAAGAGATCGAAGCAGGGGCAAATCATCAGGAAGATCCAGTACAAGTGAAGTTATGGAACAAGAAATATGGAAAGATTTTCCTGAAGATTTATTTGAGGCTGTAATTGCACGACTTCCCATTGCCGCGTTTTTCCGCTTCCGCTCTGTATGCCGTCAATGGAATTCCTTGCTGGCTTCTCAAAGCTTTTCTAAGCAATGTGCGGAAGTCCCGCAAGAAAATCCATGGTTTTACACCATAACCCATGAAAATGTGAATTCAGGAGCCATGTATGACCCTTCTTTGAAAAAGTGGCATCATCCGTCTATATCACCACTGCCCACAAAGTTGATTGTTTTGCCAGTGGCTTCTGCTGGGGGTTTAGTTTGCTTTCTTGACATTGGCCATCGTAACTTCTATGTATGTAACCCACTAACTCAATCCTTCAAGGAGTTGCCAGCTCGGTCAGTTAAGGTCTGGTCTCGCGTTGCTGTAGGGATGACAGTGAATGGAAATTCAATCAGTTCAGGCTACAAGATCCTATGGGTGGGTTGTGATGGAGAATATGAAGTTTATGACTCGGTGAAAAACTCTTGGAGTCGTCCAGGAAACATGCCTGGAAGTATGAACCTGCCATTGTCCCTTAACTTCAGGTCGCAAACTGTCTCTATTGACAGTACCCTATACTTCATGCGTTCAGATCCAGAAGGGGTTGTTTCCTATGATATGGCAACAGGGGTTTGGAAACAGTACATAATCCCAGCGCCACTACATTTGACTGACCACACTCTAGCTGAGTATGATGGTCAGATCATGCTTGTGGGCTTGCTCACAAAGAATGCAGCCACGTGTGTATGCATATGGGAGCTGCAGAGAATGACACTCTTGTGGAAGGAGGTAGACAGAATGCCAAATATATGGTGCTTGGACTTTTATGGTAAGCACGTCAGAATGACTTGCCTAGGGAACAAAGGCTTGCTCATGTTGTCTCTGAGATCGAAACAAATGAATCGGTTGGTTACTTACAACATAGCAAGGAAAGAATGGCTGAAGGTTCCTGGGTGTGTGGTGCCGAATGGGAAGAAACGGCAGTGGATAGCATGTGGTACTGCATTTCATCCATGCTTGACCGCGGTGGCTTGA

Protein sequence

>Msa1447160

MEGLAMLKQLIGQLQQLLDSHHHSSSSSSSSILQQQPSHQTIFLQHHPPRWTSFDLEDSSVDDCCGLVMAAGKSHSFRMSEPLKPPPAKKPRRDRSRGKSSGRSSTSEVMEQEIWKDFPEDLFEAVIARLPIAAFFRFRSVCRQWNSLLASQSFSKQCAEVPQENPWFYTITHENVNSGAMYDPSLKKWHHPSISPLPTKLIVLPVASAGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTVNGNSISSGYKILWVGCDGEYEVYDSVKNSWSRPGNMPGSMNLPLSLNFRSQTVSIDSTLYFMRSDPEGVVSYDMATGVWKQYIIPAPLHLTDHTLAEYDGQIMLVGLLTKNAATCVCIWELQRMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSKQMNRLVTYNIARKEWLKVPGCVVPNGKKRQWIACGTAFHPCLTAVA*