AlfalfaGEDB | Msa0269740

M. sativa cultivar zhongmu-4 / Msa0269740

KEGG: K17985
GO: GO:0000045 GO:0000422 GO:0000423 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0005856 GO:0005929 GO:0005930 GO:0006914 GO:0006950 GO:0006996 GO:0007005 GO:0007033 GO:0007275 GO:0007399 GO:0008150 GO:0008152 GO:0008285 GO:0009056 GO:0009790 GO:0009792 GO:0009888 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010506 GO:0010508 GO:0010562 GO:0010656 GO:0010660 GO:0010662 GO:0010664 GO:0010665 GO:0010667 GO:0010941 GO:0016043 GO:0016236 GO:0019216 GO:0019220 GO:0019222 GO:0019899 GO:0021915 GO:0022411 GO:0022607 GO:0030139 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031410 GO:0031625 GO:0031982 GO:0032501 GO:0032502 GO:0032838 GO:0033554 GO:0033674 GO:0035295 GO:0042127 GO:0042325 GO:0042327 GO:0042981 GO:0042995 GO:0043009 GO:0043066 GO:0043067 GO:0043069 GO:0043085 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043523 GO:0043524 GO:0043549 GO:0043550 GO:0043551 GO:0043552 GO:0044085 GO:0044093 GO:0044237 GO:0044248 GO:0044389 GO:0044422 GO:0044424 GO:0044430 GO:0044441 GO:0044444 GO:0044446 GO:0044463 GO:0044464 GO:0045335 GO:0045834 GO:0045937 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048731 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051020 GO:0051174 GO:0051338 GO:0051347 GO:0051716 GO:0060429 GO:0060548 GO:0061726 GO:0061912 GO:0061919 GO:0065007 GO:0065009 GO:0070925 GO:0071840 GO:0080090 GO:0090218 GO:0097014 GO:0097708 GO:0098780 GO:0099568 GO:0120025 GO:0120038 GO:1901214 GO:1901215 GO:1903008 GO:1903725 GO:1903727 GO:1905037
PFAM: PF12894.10

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0269740	XP_013468408.1	98.654	743	10	0	1	743	1	743	0.0	1518

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0269740	sp\|Q9C0C7\|AMRA1_HUMAN	37.850	214	110	9	45	251	7	204	8.80e-29	127

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0269740	A0A072VWJ3	98.654	743	10	0	1	743	1	743	0.0	1518

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0034560	Msa0269740	0.806561	7.747765e-50	-8.615850e-47
Msa0074950	Msa0269740	0.833184	6.170954e-56	-8.615850e-47
Msa0129790	Msa0269740	0.810791	9.671831e-51	-8.615850e-47
Msa0167640	Msa0269740	0.852387	4.774583e-61	-8.615850e-47
Msa0227020	Msa0269740	0.838456	2.845082e-57	-8.615850e-47
Msa0259860	Msa0269740	0.834476	2.932304e-56	-8.615850e-47
Msa0269740	Msa0305340	0.814229	1.713638e-51	-8.615850e-47
Msa0269740	Msa0341460	0.808309	3.298986e-50	-8.615850e-47
Msa0269740	Msa0611180	0.859731	3.377716e-63	-8.615850e-47
Msa0269740	Msa0611240	0.843287	1.537410e-58	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0269740	MtrunA17_Chr1g0183071	98.654	743	10	0	1	743	1	743	0.0	1518
Msa0269740	MtrunA17_Chr7g0262511	66.667	783	179	11	22	743	10	771	0.0	995

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0269740	AT1G04140.1	54.293	757	297	12	29	741	32	783	0.0	771
Msa0269740	AT1G04140.2	54.222	758	298	12	29	742	32	784	0.0	770
Msa0269740	AT5G43930.2	55.850	718	273	11	28	729	34	723	0.0	746
Msa0269740	AT5G43930.3	55.850	718	273	11	28	729	34	723	0.0	746
Msa0269740	AT5G43930.1	55.850	718	273	11	28	729	34	723	0.0	746
Msa0269740	AT5G43930.4	53.898	744	273	13	28	729	34	749	0.0	728
Msa0269740	AT3G49660.1	28.571	182	116	7	105	277	78	254	3.82e-12	68.6

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Find 223 sgRNAs with CRISPR-Local

Find 499 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGATATGGTGCCCCATG+CGG	0.601223	2_3:+757638	None:intergenic
AAAATCAGTTACAGGTAAAC+GGG	0.463268	2_3:+756843	None:intergenic
AAACCTGATTGTAAAACTGC+AGG	0.577206	2_3:+756886	None:intergenic
AAAGATATGGTGCCCCATGC+GGG	0.547922	2_3:+757639	None:intergenic
AAATTTGATTTCCAGGGTCG+AGG	0.494344	2_3:-759389	Msa0269740:intron
AACAGCAATTATTTCCCCAT+TGG	0.507326	2_3:+757897	None:intergenic
AACGACAGATACTTGCTAGT+GGG	0.637390	2_3:-758124	Msa0269740:CDS
AACTAGAAGAATCGAATTTG+GGG	0.645970	2_3:+760796	None:intergenic
AACTGACCTGGATTGAAGTC+AGG	0.498949	2_3:+755996	None:intergenic
AACTGTGTTTGCAGTGAAAT+GGG	0.443834	2_3:-756365	Msa0269740:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TCTAGTTGTACTTTGAATCA+AGG	+	chr2_3:753561-753580	None:intergenic	30.0%
AACTAGAAGAATCGAATTTG+GGG	+	chr2_3:753678-753697	None:intergenic	30.0%
GAACTAGAAGAATCGAATTT+GGG	+	chr2_3:753679-753698	None:intergenic	30.0%
AGAACTAGAAGAATCGAATT+TGG	+	chr2_3:753680-753699	None:intergenic	30.0%
ATATAGAGAGAGAAAGAAAG+AGG	-	chr2_3:753742-753761	Msa0269740:three_prime_UTR	30.0%
TGTTTCGTTAACAACACAAA+CGG	-	chr2_3:753800-753819	Msa0269740:exon	30.0%
AAGGATCAAATCTGAGAAAT+TGG	+	chr2_3:753851-753870	None:intergenic	30.0%
TCTTTAATCTCAATTCTCCA+TGG	-	chr2_3:753874-753893	Msa0269740:CDS	30.0%
AGATATGGAAAATTCATACC+TGG	+	chr2_3:753972-753991	None:intergenic	30.0%
GATAACAAAAAAAATTGGCC+CGG	-	chr2_3:754433-754452	Msa0269740:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_3	gene	753515	760978	753515	ID=Msa0269740;Name=Msa0269740
chr2_3	mRNA	753515	760978	753515	ID=Msa0269740-mRNA-1;Parent=Msa0269740;Name=Msa0269740-mRNA-1;_AED=0.04;_eAED=0.04;_QI=378\|1\|1\|1\|1\|1\|13\|292\|743
chr2_3	exon	753515	753908	753515	ID=Msa0269740-mRNA-1:exon:313;Parent=Msa0269740-mRNA-1
chr2_3	exon	753985	754098	753985	ID=Msa0269740-mRNA-1:exon:312;Parent=Msa0269740-mRNA-1
chr2_3	exon	754655	754768	754655	ID=Msa0269740-mRNA-1:exon:311;Parent=Msa0269740-mRNA-1
chr2_3	exon	756003	756063	756003	ID=Msa0269740-mRNA-1:exon:310;Parent=Msa0269740-mRNA-1
chr2_3	exon	756173	756373	756173	ID=Msa0269740-mRNA-1:exon:309;Parent=Msa0269740-mRNA-1
chr2_3	exon	756625	757526	756625	ID=Msa0269740-mRNA-1:exon:308;Parent=Msa0269740-mRNA-1
chr2_3	exon	757628	757753	757628	ID=Msa0269740-mRNA-1:exon:307;Parent=Msa0269740-mRNA-1
chr2_3	exon	757882	757949	757882	ID=Msa0269740-mRNA-1:exon:306;Parent=Msa0269740-mRNA-1
chr2_3	exon	758057	758165	758057	ID=Msa0269740-mRNA-1:exon:305;Parent=Msa0269740-mRNA-1
chr2_3	exon	759106	759190	759106	ID=Msa0269740-mRNA-1:exon:304;Parent=Msa0269740-mRNA-1
chr2_3	exon	759280	759396	759280	ID=Msa0269740-mRNA-1:exon:303;Parent=Msa0269740-mRNA-1
chr2_3	exon	759533	759685	759533	ID=Msa0269740-mRNA-1:exon:302;Parent=Msa0269740-mRNA-1
chr2_3	exon	760521	760978	760521	ID=Msa0269740-mRNA-1:exon:301;Parent=Msa0269740-mRNA-1
chr2_3	five_prime_UTR	760601	760978	760601	ID=Msa0269740-mRNA-1:five_prime_utr;Parent=Msa0269740-mRNA-1
chr2_3	CDS	760521	760600	760521	ID=Msa0269740-mRNA-1:cds;Parent=Msa0269740-mRNA-1
chr2_3	CDS	759533	759685	759533	ID=Msa0269740-mRNA-1:cds;Parent=Msa0269740-mRNA-1
chr2_3	CDS	759280	759396	759280	ID=Msa0269740-mRNA-1:cds;Parent=Msa0269740-mRNA-1
chr2_3	CDS	759106	759190	759106	ID=Msa0269740-mRNA-1:cds;Parent=Msa0269740-mRNA-1
chr2_3	CDS	758057	758165	758057	ID=Msa0269740-mRNA-1:cds;Parent=Msa0269740-mRNA-1
chr2_3	CDS	757882	757949	757882	ID=Msa0269740-mRNA-1:cds;Parent=Msa0269740-mRNA-1
chr2_3	CDS	757628	757753	757628	ID=Msa0269740-mRNA-1:cds;Parent=Msa0269740-mRNA-1
chr2_3	CDS	756625	757526	756625	ID=Msa0269740-mRNA-1:cds;Parent=Msa0269740-mRNA-1
chr2_3	CDS	756173	756373	756173	ID=Msa0269740-mRNA-1:cds;Parent=Msa0269740-mRNA-1
chr2_3	CDS	756003	756063	756003	ID=Msa0269740-mRNA-1:cds;Parent=Msa0269740-mRNA-1
chr2_3	CDS	754655	754768	754655	ID=Msa0269740-mRNA-1:cds;Parent=Msa0269740-mRNA-1
chr2_3	CDS	753985	754098	753985	ID=Msa0269740-mRNA-1:cds;Parent=Msa0269740-mRNA-1
chr2_3	CDS	753807	753908	753807	ID=Msa0269740-mRNA-1:cds;Parent=Msa0269740-mRNA-1
chr2_3	three_prime_UTR	753515	753806	753515	ID=Msa0269740-mRNA-1:three_prime_utr;Parent=Msa0269740-mRNA-1

Gene Sequence

>Msa0269740

ATGGAATTTTCCATGGAATCAGCGGAACTTCATCCTCTGTGTCATGATCAACCCTCATCCTCCCAGAATTCCAACACCAGTGGTAGAAATGTCTTCAGTTTGCTAGCTCAAAGAGAGATTTCACCTAGAAACAAGCATGTACGAAAGTGTCACTGGGGAGAATCTTCTGAATCAAAATCTGGCTGTTCTCGTTCTAGAACAGTGGTAGATGCAAAGTGTGGTCTCCTCTCATGGGTCGAGGCTGAGTCATTGCAGCATTTGTCAGCCAAGTATTGCCCTTTATTGCCTGCCCCACGGTCTACTATTGCTGCAGCATTTAGTCCAGATGGGAAAATTCTTGCCTCCACACATGGTGACCACACAGTTAAGATCATTGATTGTGAAACTGGAAATTGCTTGAAGGTATTAGTTGGCCACAGAAGGACGCCTTGGGTGGTTAGGTTCCATCCATTGCAACGACAGATACTTGCTAGTGGGAGTTTGGACCAAGAAGTTCGTTTATGGGATGCTAGCTCATCAGAGTGGATTTTATCTCACTATTTTTATCGCCCTATTGCATCTCTCGCTTTCCATGCCAATGGGGAAATAATTGCTGTTGCATCAGGTCACAAGTTGTACGTGTGGCACTACAAAAATGCAAGGGAATTATCTTCACCAGTATTTGTGTTGAAGACAAGGCGCTCGCTACGGGCTGTGCATTTTCACCCGCATGGGGCACCATATCTTTTAACTGCTCAGGTCAATGATCTCAACTCTTCAGATTGCTCAATGACAGAGGCAACATCTCATGGTCATTTAGAATATCCTCCACCGGCTGTTTTTGTCACAAATGTTCATCCCAGGACGCAGATCAACATGTCAAGTGAACCACCAGTGTCAAGAGTTGAATTGCAGCATGCTAGTAACGATGTTGGTTTGAGTAGCATGCAGGTTGAACAATACGGTACTCGATTGTCAAACTCCGAGATACCCACTAGCTCTCAAACCGGAGCAGAATATAATGGCCATACTACTTTGCCTAATCAAATGAGAATTGGCATCAATAACCTCACAATGGGTGGTAGGGAGGCTTATGAAACAGAACCAGCCGAAGCAAGCCAACATGAAAACGCTGATCATGTTGTAAAACGCGTTGAACTCTCTGAGCTTGGTCAATTTCCTCAGATTGTTCCGTCACCAGATTCTAATGGATGGGAGCTGCCTTTTCTGCAAGGATGGTTAGTCGGTCAAAGCCAAGTTGGTGTTCCCTCAATGCTTCCTCAACAGATTGGTTCTTTCACTATGCCATCTAATCTGTTCACCACCAATGTTGAGCTAGCTGTGCCACCTTCAGGAATGCCCAATGGCATCAGCATACCTGCAGTTTTACAATCAGGTTTACAGAATCAATTTTCACCATCCCGTTTACCTGTAACTGATTTTGGCAATCTCGTTCCTTCTATTAATTTGCCGCATGATGGGTTTGATAGCCAAACCATTATAAATCGAATCCAGTCAGAACTTGCCAAATCAGTGGCCACTGCAGCTGCTACAGAATTACCTTGCACTGTTAACTTAAAAGTATGGTCATATGACTTAAAAAATCCCTGCGCCCCACTACAAAGATGCCGTCTAACTATACCACATGTCGTCCTCTGCAGTGAAATGGGTGCCCATTTTTCACCATGTGGTAGATTTTTAGCCGCCTGTGTTGCATGTATGCACCCTCATATGGAAGCTGATCCAGGATTACAAACTCTTGTACACCAGGAGCCTGGACTTCCAACATCACCAACTCGACATCCAATCTCAGCACATCAAGTAATGTATGAGCTCCGGATATATTCCCTGGAGGAAGCAACATTTGGATCGGTGCTTGTATCACGACCAATTAGAGCTGCTCATTGCCTGACTTCAATCCAGTTCTCGCCTACATCTGAGCATATTCTGCTCGCCTATGGTCGACGTCATAGCTCTCTTCTGAAAAGCATTGTCATTGATGGAGAAAAAACATCATCAATATATACAGTCTTGGAGGTATATAGAGTATCAGATATGGAACTTGTCAGGGTGCTTTCTAGTGCAGAGGATGAGGTCAATGTGGCATGCTTTCATCCTTTTCCTGGGGGAGGGCTTGTCTATGGAACCAAGGAAGGAAAGCTTAGGGTCTTCCAGTTTGACCGTACTTGTAATGTGAATGGCACTGGATCTGGTTACTTCCCTGAGGAGAACATGATTGGAGTCGATCAATGA

Protein sequence

>Msa0269740

MEFSMESAELHPLCHDQPSSSQNSNTSGRNVFSLLAQREISPRNKHVRKCHWGESSESKSGCSRSRTVVDAKCGLLSWVEAESLQHLSAKYCPLLPAPRSTIAAAFSPDGKILASTHGDHTVKIIDCETGNCLKVLVGHRRTPWVVRFHPLQRQILASGSLDQEVRLWDASSSEWILSHYFYRPIASLAFHANGEIIAVASGHKLYVWHYKNARELSSPVFVLKTRRSLRAVHFHPHGAPYLLTAQVNDLNSSDCSMTEATSHGHLEYPPPAVFVTNVHPRTQINMSSEPPVSRVELQHASNDVGLSSMQVEQYGTRLSNSEIPTSSQTGAEYNGHTTLPNQMRIGINNLTMGGREAYETEPAEASQHENADHVVKRVELSELGQFPQIVPSPDSNGWELPFLQGWLVGQSQVGVPSMLPQQIGSFTMPSNLFTTNVELAVPPSGMPNGISIPAVLQSGLQNQFSPSRLPVTDFGNLVPSINLPHDGFDSQTIINRIQSELAKSVATAAATELPCTVNLKVWSYDLKNPCAPLQRCRLTIPHVVLCSEMGAHFSPCGRFLAACVACMHPHMEADPGLQTLVHQEPGLPTSPTRHPISAHQVMYELRIYSLEEATFGSVLVSRPIRAAHCLTSIQFSPTSEHILLAYGRRHSSLLKSIVIDGEKTSSIYTVLEVYRVSDMELVRVLSSAEDEVNVACFHPFPGGGLVYGTKEGKLRVFQFDRTCNVNGTGSGYFPEENMIGVDQ*