AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0611240

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0611240 MtrunA17_Chr4g0044601 97.863 702 12 1 1 702 1 699 0.0 1407
Msa0611240 MtrunA17_Chr1g0153211 33.827 742 417 25 1 702 1 708 1.76e-72 249
Msa0611240 MtrunA17_Chr1g0147951 45.455 165 77 3 542 696 308 469 1.81e-38 149
Msa0611240 MtrunA17_Chr3g0138951 44.643 168 79 4 543 699 368 532 6.15e-35 140
Msa0611240 MtrunA17_Chr7g0263911 38.889 216 106 7 492 700 440 636 5.57e-33 135
Msa0611240 MtrunA17_Chr2g0316601 45.185 135 61 3 575 701 388 517 2.90e-32 131
Msa0611240 MtrunA17_Chr1g0181401 49.573 117 55 2 586 701 417 530 7.82e-31 127
Msa0611240 MtrunA17_Chr2g0316591 50.943 106 49 1 596 701 197 299 1.61e-30 122
Msa0611240 MtrunA17_Chr2g0315711 42.982 114 57 1 596 701 217 330 2.85e-26 110
Msa0611240 MtrunA17_Chr6g0483631 48.598 107 54 1 596 701 252 358 1.65e-25 108
Msa0611240 MtrunA17_Chr5g0401961 39.597 149 88 2 553 700 449 596 5.26e-25 110
Msa0611240 MtrunA17_Chr8g0392341 45.299 117 63 1 586 701 236 352 9.84e-25 106
Msa0611240 MtrunA17_Chr3g0086891 36.806 144 81 1 557 700 312 445 2.18e-23 103
Msa0611240 MtrunA17_Chr4g0032561 40.404 99 59 0 603 701 144 242 4.94e-17 81.3
Msa0611240 MtrunA17_Chr3g0124751 42.222 90 50 1 606 695 139 226 1.83e-16 79.7
Msa0611240 MtrunA17_Chr8g0352131 35.354 99 64 0 603 701 144 242 4.38e-16 78.6
Msa0611240 MtrunA17_Chr2g0315681 39.583 96 50 1 588 675 81 176 1.25e-15 75.5
Msa0611240 MtrunA17_Chr1g0211831 41.000 100 57 1 603 702 238 335 1.13e-14 75.9
Msa0611240 MtrunA17_Chr1g0169651 35.238 105 61 2 594 698 629 726 1.42e-11 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0611240 AT4G34040.1 38.843 726 360 23 1 702 1 666 1.62e-106 338
Msa0611240 AT2G15530.5 36.302 741 392 23 1 702 4 703 1.06e-101 327
Msa0611240 AT2G15530.3 36.302 741 392 23 1 702 4 703 1.06e-101 327
Msa0611240 AT2G15530.2 36.302 741 392 23 1 702 4 703 1.06e-101 327
Msa0611240 AT2G15530.1 36.302 741 392 23 1 702 4 703 1.06e-101 327
Msa0611240 AT2G15530.7 36.302 741 392 23 1 702 4 703 1.06e-101 327
Msa0611240 AT2G15530.6 36.167 741 371 25 1 702 4 681 8.28e-99 319
Msa0611240 AT2G15530.4 35.918 735 391 23 1 696 4 697 5.76e-97 317
Msa0611240 AT5G42940.2 31.812 745 400 30 1 700 1 682 1.54e-62 221
Msa0611240 AT5G42940.1 31.812 745 400 30 1 700 1 682 1.54e-62 221
Msa0611240 AT1G45180.2 41.176 340 181 9 372 700 258 589 4.82e-57 204
Msa0611240 AT1G45180.1 41.176 340 181 9 372 700 306 637 8.82e-57 204
Msa0611240 AT1G45180.3 41.176 340 181 9 372 700 306 637 8.82e-57 204
Msa0611240 AT1G45180.4 41.176 340 181 9 372 700 306 637 8.82e-57 204
Msa0611240 AT5G24870.3 45.732 164 78 4 546 699 350 512 2.29e-37 147
Msa0611240 AT5G24870.1 45.732 164 78 4 546 699 350 512 2.29e-37 147
Msa0611240 AT5G24870.2 45.732 164 78 4 546 699 350 512 2.29e-37 147
Msa0611240 AT5G10650.1 47.297 148 67 4 562 699 373 519 2.09e-35 141
Msa0611240 AT5G10650.2 47.297 148 67 4 562 699 373 519 2.09e-35 141
Msa0611240 AT4G31450.1 47.059 153 72 2 559 702 343 495 2.31e-34 137
Msa0611240 AT4G31450.2 47.059 153 72 2 559 702 343 495 2.31e-34 137
Msa0611240 AT1G53190.2 50.000 114 49 2 596 701 375 488 1.43e-30 126
Msa0611240 AT1G53190.1 50.000 114 49 2 596 701 375 488 1.43e-30 126
Msa0611240 AT3G15070.1 48.182 110 53 2 596 701 365 474 2.31e-28 119
Msa0611240 AT3G15070.2 48.182 110 53 2 596 701 365 474 2.31e-28 119
Msa0611240 AT1G73760.1 43.902 123 67 1 577 699 243 363 2.62e-28 117
Msa0611240 AT2G37150.10 42.458 179 96 5 526 700 363 538 9.61e-27 115
Msa0611240 AT2G37150.11 42.458 179 96 5 526 700 363 538 9.61e-27 115
Msa0611240 AT2G37150.9 42.458 179 96 5 526 700 363 538 9.61e-27 115
Msa0611240 AT2G37150.12 42.458 179 96 5 526 700 363 538 9.61e-27 115
Msa0611240 AT2G37150.5 42.458 179 96 5 526 700 363 538 9.61e-27 115
Msa0611240 AT2G37150.4 42.458 179 96 5 526 700 363 538 9.61e-27 115
Msa0611240 AT2G37150.2 42.458 179 96 5 526 700 363 538 9.61e-27 115
Msa0611240 AT2G37150.8 42.458 179 96 5 526 700 363 538 9.61e-27 115
Msa0611240 AT2G37150.7 42.458 179 96 5 526 700 363 538 9.61e-27 115
Msa0611240 AT2G37150.6 42.458 179 96 5 526 700 363 538 9.61e-27 115
Msa0611240 AT2G37150.1 42.458 179 96 5 526 700 363 538 9.61e-27 115
Msa0611240 AT2G37150.14 42.458 179 96 5 526 700 379 554 1.60e-26 115
Msa0611240 AT2G37150.13 42.458 179 96 5 526 700 379 554 1.60e-26 115
Msa0611240 AT2G37150.15 42.458 179 96 5 526 700 379 554 1.60e-26 115
Msa0611240 AT2G37150.3 42.458 179 96 5 526 700 416 591 4.21e-26 114
Msa0611240 AT1G17970.1 42.276 123 68 2 577 699 245 364 7.93e-24 104
Msa0611240 AT5G67120.1 41.111 90 50 1 606 695 181 267 3.36e-17 82.8
Msa0611240 AT5G10650.3 42.593 108 51 4 562 659 373 479 5.99e-16 81.6
Msa0611240 AT3G19910.1 41.489 94 53 1 602 695 237 328 7.01e-16 80.1
Msa0611240 AT3G63530.2 35.354 99 64 0 603 701 145 243 1.27e-15 77.8
Msa0611240 AT3G63530.1 35.354 99 64 0 603 701 145 243 1.27e-15 77.8
Msa0611240 AT5G52140.1 36.634 101 56 1 604 696 175 275 2.45e-15 77.4
Msa0611240 AT1G36950.1 33.654 104 66 2 596 699 24 124 2.47e-14 73.6
Msa0611240 AT3G47180.1 37.363 91 54 2 606 695 115 203 7.27e-13 68.9
Msa0611240 AT4G00070.1 34.043 94 59 2 596 689 88 178 1.20e-12 67.4

Find 220 sgRNAs with CRISPR-Local

Find 401 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAACGAATCCTTGGATTTA+AGG 0.097825 4_2:+59362449 Msa0611240:CDS
CAAGTTCTTCTTTAGCTAAT+TGG 0.143461 4_2:+59362023 Msa0611240:CDS
ACATCCCAGGGTATTAATTT+TGG 0.158723 4_2:+59361818 Msa0611240:CDS
CGCAAAATGCAGTAGATTTC+CGG 0.221239 4_2:+59361525 Msa0611240:CDS
CTGAGCTGATTGAGGGAAAA+AGG 0.221504 4_2:-59362882 None:intergenic
AAGTTCTTCTTTAGCTAATT+GGG 0.226927 4_2:+59362024 Msa0611240:CDS
AAAAGAGAGAGAGTAATTAA+AGG 0.247672 4_2:-59359451 None:intergenic
GGTCCTAATGTGAGCTTTAA+TGG 0.250304 4_2:+59361599 Msa0611240:CDS
GTTAATAACAACGATCCTTT+TGG 0.270646 4_2:+59361899 Msa0611240:CDS
TCCCTTGTACAATCTGAAAA+TGG 0.272688 4_2:+59362115 Msa0611240:CDS
AGGTGATTTGTCACCTTTAG+AGG 0.276118 4_2:+59362183 Msa0611240:CDS
TTTCCGGCTGTCAGATTATA+GGG 0.281834 4_2:+59361541 Msa0611240:CDS
TACAATCTGAAAATGGTTAC+TGG 0.301098 4_2:+59362122 Msa0611240:CDS
TTACATTTATACTGTGATAA+TGG 0.309211 4_2:+59364668 Msa0611240:three_prime_UTR
TCACCCACCCATTTCAATTC+AGG 0.328214 4_2:+59359626 Msa0611240:five_prime_UTR
CCTCTCAATTTAACATCAAC+AGG 0.330426 4_2:+59362370 Msa0611240:CDS
TTTCTTGTATTCTGCTGAAA+TGG 0.334803 4_2:-59362226 None:intergenic
ATTTCCGGCTGTCAGATTAT+AGG 0.345014 4_2:+59361540 Msa0611240:CDS
AAAGAGATCCTGAATTGAAA+TGG 0.348292 4_2:-59359634 None:intergenic
TGGACAGAATCTCGGTTTGC+TGG 0.349741 4_2:+59364370 Msa0611240:CDS
TCTGTTGATCTTAATGTTCC+TGG 0.349757 4_2:+59362154 Msa0611240:CDS
AACTTCCTCTCATCTTAGAT+TGG 0.351737 4_2:+59364578 Msa0611240:three_prime_UTR
GACCAGATTCAGTCCAGAAC+TGG 0.352502 4_2:-59361639 None:intergenic
AAATTGAGAGGTACAGATTC+CGG 0.354926 4_2:-59362358 None:intergenic
AAGCTCTGGGTACATGGCTT+GGG 0.358208 4_2:+59361985 Msa0611240:CDS
TTGCTGATGAAGCACCTATT+TGG 0.361321 4_2:-59361964 None:intergenic
TGCATCATGTTAACAATTGT+TGG 0.362768 4_2:-59361449 None:intergenic
GGCCATTCCTCCTCTACTTC+CGG 0.363757 4_2:+59362922 Msa0611240:CDS
CCCAAGTAATTGCCTTTCCT+CGG 0.375762 4_2:-59361744 None:intergenic
TTCCAATGCATTTCCTTCAA+TGG 0.376501 4_2:+59362267 Msa0611240:CDS
CAGATTCCGGATGATGTAGA+TGG 0.380959 4_2:-59362345 None:intergenic
AGTTCTTCATTCAACCAAAT+AGG 0.383336 4_2:+59361950 Msa0611240:CDS
CAAGGTCAAAGGAGGACTAT+TGG 0.384610 4_2:+59361419 Msa0611240:CDS
ATCTCGGTTTGCTGGATTGT+GGG 0.387032 4_2:+59364378 Msa0611240:CDS
ACCCAGTTCTGGACTGAATC+TGG 0.388706 4_2:+59361637 Msa0611240:CDS
GAAAAGATATGCTTATGCTT+TGG 0.389315 4_2:-59359361 None:intergenic
AGGTTAGCAGCTGGAGCAGC+TGG 0.389981 4_2:+59362469 Msa0611240:CDS
TCCGCAATACTTACCATTGA+AGG 0.391370 4_2:-59362280 None:intergenic
CGCGGGAAAGGTAAAGAAAC+TGG 0.399821 4_2:+59361869 Msa0611240:CDS
AATACCGGTGAACCCAGTTC+TGG 0.405795 4_2:+59361626 Msa0611240:CDS
TCCGCATTGCTAGCAGGACT+TGG 0.414252 4_2:-59363447 None:intergenic
TTTCAGCCATGCCATGATAT+AGG 0.415855 4_2:-59363961 None:intergenic
ATGAACATGCCTGCATCTTC+AGG 0.416304 4_2:+59362679 Msa0611240:CDS
CTTAATGTTCCTGGAAGCTT+AGG 0.416639 4_2:+59362163 Msa0611240:CDS
GGAGCTGGAACCTTGCAAAA+AGG 0.419168 4_2:-59361789 None:intergenic
AATTTGCAAAACAACGGCCT+TGG 0.421383 4_2:+59364457 Msa0611240:CDS
AAGGTCAAAGGAGGACTATT+GGG 0.421479 4_2:+59361420 Msa0611240:CDS
ACTTGGATTACAGGAATTGT+TGG 0.422489 4_2:+59364102 Msa0611240:intron
GACAAATCACCTAAGCTTCC+AGG 0.422851 4_2:-59362172 None:intergenic
GCTATAAGAACTTGAAGATC+TGG 0.424200 4_2:-59362587 None:intergenic
TCTCTCATTTAACGAATCCT+TGG 0.425147 4_2:+59362441 Msa0611240:CDS
TTAAATGTCCAGCTGGGATT+AGG 0.425206 4_2:-59362805 None:intergenic
CAGCCATTAAAGCTCACATT+AGG 0.430620 4_2:-59361602 None:intergenic
GGATGCTCGGTACCATCTCT+TGG 0.437725 4_2:-59362655 None:intergenic
TCTTCAAGTTCTTATAGCTC+AGG 0.441108 4_2:+59362592 Msa0611240:CDS
CCCGAGGAAAGGCAATTACT+TGG 0.442769 4_2:+59361743 Msa0611240:CDS
GATAGAGAGAAGACATCAAT+TGG 0.443897 4_2:+59361926 Msa0611240:CDS
GGTGCTTCATCAGCAAGCTC+TGG 0.446881 4_2:+59361971 Msa0611240:CDS
GCATCATGTTAACAATTGTT+GGG 0.448389 4_2:-59361448 None:intergenic
ACAGGAATTGTTGGCATTGG+AGG 0.449223 4_2:+59364111 Msa0611240:intron
AGTTCTATGCAACTGTGTAC+TGG 0.450835 4_2:+59362079 Msa0611240:CDS
CAAGCTCTGGGTACATGGCT+TGG 0.453447 4_2:+59361984 Msa0611240:CDS
ATCAGCAAGCTCTGGGTACA+TGG 0.454476 4_2:+59361979 Msa0611240:CDS
TCAGCATCTAGTACTCATAA+TGG 0.455341 4_2:+59362901 Msa0611240:CDS
TCCGTCATAAATGATGGTCT+TGG 0.456568 4_2:-59362988 None:intergenic
AATACCCTGGGATGTATGAT+TGG 0.457792 4_2:-59361810 None:intergenic
TGAAGATGCAGGCATGTTCA+TGG 0.458693 4_2:-59362677 None:intergenic
ACGGAAAAGGATGCATGTGC+AGG 0.463084 4_2:-59362537 None:intergenic
GAGGCATACCTCCTCCATCC+TGG 0.464929 4_2:+59362752 Msa0611240:CDS
TTGGCATTGGAGGAGCGTAT+AGG 0.467631 4_2:+59364121 Msa0611240:CDS
CTGGGTATTTGATGCGGAGA+AGG 0.469401 4_2:-59362415 None:intergenic
GTTGCATAGAACTATCTTCA+AGG 0.469481 4_2:-59362069 None:intergenic
ATTACAGGAATTGTTGGCAT+TGG 0.469952 4_2:+59364108 Msa0611240:intron
TACCATTGAAGGAAATGCAT+TGG 0.475872 4_2:-59362269 None:intergenic
TACATGGCTTGGGGAGATAG+TGG 0.476826 4_2:+59361995 Msa0611240:CDS
CACCCCTCCGCATTGCTAGC+AGG 0.478449 4_2:-59363453 None:intergenic
ACTTCCTCTCATCTTAGATT+GGG 0.478741 4_2:+59364579 Msa0611240:three_prime_UTR
TTCATGGTTAAATGTCCAGC+TGG 0.479375 4_2:-59362812 None:intergenic
GCAGCTCTATTCCACGGAAA+AGG 0.483068 4_2:-59362550 None:intergenic
TTCTCTCTATCTAATCCAAA+AGG 0.484392 4_2:-59361914 None:intergenic
GAGAGAGAGTAATTAAAGGA+AGG 0.487700 4_2:-59359447 None:intergenic
CTTGAAGATCTGGCCACTCT+AGG 0.488392 4_2:-59362577 None:intergenic
AGGAAGGATGAATTCTGGAT+TGG 0.489393 4_2:-59361769 None:intergenic
TCTAGCAATGTGAACAATGC+TGG 0.492365 4_2:+59362730 Msa0611240:CDS
TTTGACCCGTTCCTATATCA+TGG 0.495379 4_2:+59363950 Msa0611240:CDS
GCATGTGCAGGGATGGTGAC+TGG 0.496504 4_2:-59362525 None:intergenic
ACTAGATGCTGAGCTGATTG+AGG 0.497175 4_2:-59362890 None:intergenic
AATCTCGGTTTGCTGGATTG+TGG 0.503034 4_2:+59364377 Msa0611240:CDS
AATGACCCATCTACATCATC+CGG 0.504390 4_2:+59362339 Msa0611240:CDS
CCATGCCATGATATAGGAAC+GGG 0.504505 4_2:-59363955 None:intergenic
AGCTTTAATGGCTGGAATAC+CGG 0.504903 4_2:+59361611 Msa0611240:CDS
CCAAGTAATTGCCTTTCCTC+GGG 0.505140 4_2:-59361743 None:intergenic
GCGTCTCCCCTCATTGTCAA+AGG 0.505562 4_2:-59363061 None:intergenic
CTAATGTGAGCTTTAATGGC+TGG 0.506591 4_2:+59361603 Msa0611240:CDS
AGTTCTTCTTTAGCTAATTG+GGG 0.509140 4_2:+59362025 Msa0611240:CDS
CGAACCTTGCTGTATCTGTC+AGG 0.510627 4_2:+59364237 Msa0611240:CDS
CTAGATGCTGAGCTGATTGA+GGG 0.511581 4_2:-59362889 None:intergenic
TTGGATTTAAGGTTAGCAGC+TGG 0.512421 4_2:+59362460 Msa0611240:CDS
ATATCAGTGCCGTTAGAACT+AGG 0.513259 4_2:-59361476 None:intergenic
ATCATTTATGACGGAGAGAA+GGG 0.513405 4_2:+59362996 Msa0611240:CDS
TCGTAGGAGGAATATGTTGA+TGG 0.514134 4_2:+59364350 Msa0611240:intron
GCTTTGGTTCGTGTATCAAA+CGG 0.514554 4_2:-59359345 None:intergenic
TTCGTTAAATGAGAGAGAGC+TGG 0.514820 4_2:-59362434 None:intergenic
TTAGACCATCATCGTTGACT+TGG 0.518707 4_2:-59361664 None:intergenic
GGCCTCTACGAAACTTTGAT+AGG 0.519192 4_2:+59362314 Msa0611240:CDS
TCCTTCAATGGTAAGTATTG+CGG 0.521830 4_2:+59362279 Msa0611240:CDS
AAGAGATCCTGAATTGAAAT+GGG 0.522041 4_2:-59359633 None:intergenic
CTTGTATTCTGCTGAAATGG+AGG 0.528159 4_2:-59362223 None:intergenic
TGAAGGAGGGCCGGAAGTAG+AGG 0.529847 4_2:-59362932 None:intergenic
GATGCTCGGTACCATCTCTT+GGG 0.530647 4_2:-59362654 None:intergenic
GAGTTTCAGAGTTCAGTCCC+TGG 0.531646 4_2:+59362857 Msa0611240:CDS
CAGCTCCAATCATACATCCC+AGG 0.532081 4_2:+59361805 Msa0611240:CDS
TTCTCCTCGTCACGAGGCCA+AGG 0.532429 4_2:-59364474 None:intergenic
TATGTTGATGGACAGAATCT+CGG 0.533020 4_2:+59364362 Msa0611240:CDS
CTGGGATGTATGATTGGAGC+TGG 0.533285 4_2:-59361804 None:intergenic
CCATACCAAAATTAATACCC+TGG 0.533313 4_2:-59361823 None:intergenic
GTCAACCAAGTCAACGATGA+TGG 0.533785 4_2:+59361659 Msa0611240:CDS
CATCATTTATGACGGAGAGA+AGG 0.535519 4_2:+59362995 Msa0611240:CDS
CAGTCCAGAACTGGGTTCAC+CGG 0.537341 4_2:-59361630 None:intergenic
AACTCATCTGATCGCGGGAA+AGG 0.537842 4_2:+59361857 Msa0611240:CDS
TTGTATTCTGCTGAAATGGA+GGG 0.540043 4_2:-59362222 None:intergenic
GTGCTTCATCAGCAAGCTCT+GGG 0.541448 4_2:+59361972 Msa0611240:CDS
CTTCTCTCCGTCATAAATGA+TGG 0.542772 4_2:-59362994 None:intergenic
ACTGCGTGTTTACGTGGTAC+TGG 0.544695 4_2:+59361578 Msa0611240:CDS
GGTAAGTATTGCGGAAAATG+TGG 0.545122 4_2:+59362288 Msa0611240:CDS
ACTCGTTGCCTAATCCCAGC+TGG 0.546716 4_2:+59362797 Msa0611240:CDS
AGAATACCTCAGATATAAGC+CGG 0.546777 4_2:-59363083 None:intergenic
CATGTTAACAATTGTTGGGA+AGG 0.548563 4_2:-59361444 None:intergenic
GGCCGGAAGTAGAGGAGGAA+TGG 0.548685 4_2:-59362924 None:intergenic
TGCAGTGCTATTGCTGAGGA+TGG 0.548890 4_2:+59361713 Msa0611240:CDS
GTAACACGGAAATCCTCTAA+AGG 0.548952 4_2:-59362196 None:intergenic
AACATTACCCTTTGACAATG+AGG 0.550770 4_2:+59363053 Msa0611240:CDS
CCTGTTGATGTTAAATTGAG+AGG 0.551479 4_2:-59362370 None:intergenic
TTAAGAATCTTCCCAAGAGA+TGG 0.552146 4_2:+59362643 Msa0611240:CDS
CGTCTCCCCTCATTGTCAAA+GGG 0.557688 4_2:-59363060 None:intergenic
GAAGATGCATACCAACCTGC+AGG 0.560217 4_2:-59362709 None:intergenic
ATAAATGATGGTCTTGGATG+TGG 0.560899 4_2:-59362982 None:intergenic
ATGGATATGATATGTGAGGA+GGG 0.561327 4_2:-59364502 None:intergenic
ACCAGATTCAGTCCAGAACT+GGG 0.561939 4_2:-59361638 None:intergenic
CGTTCCCAATCTAAGATGAG+AGG 0.563654 4_2:-59364583 None:intergenic
CCCGTTCCTATATCATGGCA+TGG 0.564089 4_2:+59363955 Msa0611240:CDS
CTGAGAAAATGAAGGAGGGC+CGG 0.564669 4_2:-59362941 None:intergenic
AGCTGCTAACCTTAAATCCA+AGG 0.566796 4_2:-59362458 None:intergenic
ACAATTGTTAACATGATGCA+AGG 0.567765 4_2:+59361452 Msa0611240:CDS
AATGGATATGATATGTGAGG+AGG 0.569417 4_2:-59364503 None:intergenic
ACATTACCCTTTGACAATGA+GGG 0.569813 4_2:+59363054 Msa0611240:CDS
TCGTTAAATGAGAGAGAGCT+GGG 0.570407 4_2:-59362433 None:intergenic
GGTAATGTTCGCAATGAATG+AGG 0.571479 4_2:-59363039 None:intergenic
TTGGTGGTTAAGCTATATAG+TGG 0.573596 4_2:+59364643 Msa0611240:three_prime_UTR
CTAGAACCCTGAGAAAATGA+AGG 0.574039 4_2:-59362949 None:intergenic
TTGACAATGAGGGGAGACGC+CGG 0.574448 4_2:+59363064 Msa0611240:CDS
CATACCAAAATTAATACCCT+GGG 0.579560 4_2:-59361822 None:intergenic
GGTTCATGTCCTGAAGATGC+AGG 0.579750 4_2:-59362688 None:intergenic
AGGCATGTTCATGGGATGCT+CGG 0.582337 4_2:-59362668 None:intergenic
TTGCTAACTCATCTGATCGC+GGG 0.582591 4_2:+59361852 Msa0611240:CDS
TTCATGCAGTGCTATTGCTG+AGG 0.583880 4_2:+59361709 Msa0611240:CDS
AGCTCCAATCATACATCCCA+GGG 0.583928 4_2:+59361806 Msa0611240:CDS
GATCCGATCCAGGATGGAGG+AGG 0.587181 4_2:-59362760 None:intergenic
TCTTCAGGACATGAACCTGC+AGG 0.587539 4_2:+59362694 Msa0611240:CDS
GGATTAGCAGCTCTATTCCA+CGG 0.587662 4_2:-59362556 None:intergenic
AAGACATGTTATCAACATCA+AGG 0.587950 4_2:-59364009 None:intergenic
CGTATAGGAGACGTAAGCAC+TGG 0.589103 4_2:+59364136 Msa0611240:CDS
CGGAAAAGGATGCATGTGCA+GGG 0.589482 4_2:-59362536 None:intergenic
AAGTCCTGCTAGCAATGCGG+AGG 0.591095 4_2:+59363449 Msa0611240:CDS
TGGGTATTTGATGCGGAGAA+GGG 0.592151 4_2:-59362414 None:intergenic
ACGGCCTTGGCCTCGTGACG+AGG 0.592438 4_2:+59364470 Msa0611240:exon
ATACCTCCTCCATCCTGGAT+CGG 0.597148 4_2:+59362757 Msa0611240:CDS
ATGCAAGGGCCTAGTTCTAA+CGG 0.598756 4_2:+59361467 Msa0611240:CDS
AGTCCTGCTAGCAATGCGGA+GGG 0.600021 4_2:+59363450 Msa0611240:CDS
AGGAGGGCCGGAAGTAGAGG+AGG 0.600626 4_2:-59362929 None:intergenic
GCCATGCCATGATATAGGAA+CGG 0.601493 4_2:-59363956 None:intergenic
GTTTGAACTAGATCCGATCC+AGG 0.602400 4_2:-59362770 None:intergenic
TTGCATAGAACTATCTTCAA+GGG 0.607661 4_2:-59362068 None:intergenic
AGCTCTGGGTACATGGCTTG+GGG 0.608752 4_2:+59361986 Msa0611240:CDS
GAAGATGCAGGCATGTTCAT+GGG 0.612414 4_2:-59362676 None:intergenic
AGCTGGGATTAGGCAACGAG+TGG 0.614305 4_2:-59362795 None:intergenic
ATGGTCTAAAATCTGAACAA+AGG 0.615474 4_2:+59361678 Msa0611240:CDS
TCATGGTTAAATGTCCAGCT+GGG 0.617200 4_2:-59362811 None:intergenic
CCGAGGAAAGGCAATTACTT+GGG 0.617285 4_2:+59361744 Msa0611240:CDS
TCCGGCTGTCAGATTATAGG+GGG 0.617959 4_2:+59361543 Msa0611240:CDS
AGATTCCGGATGATGTAGAT+GGG 0.618088 4_2:-59362344 None:intergenic
ATGGTCTAAGACCCGAGGAA+AGG 0.618806 4_2:+59361732 Msa0611240:CDS
CATTACCCTTTGACAATGAG+GGG 0.621079 4_2:+59363055 Msa0611240:CDS
TTCCGGCTGTCAGATTATAG+GGG 0.622484 4_2:+59361542 Msa0611240:CDS
TCCAAGACCATCATTTATGA+CGG 0.623304 4_2:+59362987 Msa0611240:CDS
GAACTAGATCCGATCCAGGA+TGG 0.623562 4_2:-59362766 None:intergenic
AAAGGATGCATGTGCAGGGA+TGG 0.625312 4_2:-59362532 None:intergenic
GAAATGGAGGGCTAGTAACA+CGG 0.626528 4_2:-59362210 None:intergenic
AACCCTGAGAAAATGAAGGA+GGG 0.627593 4_2:-59362945 None:intergenic
GAACCCTGAGAAAATGAAGG+AGG 0.629118 4_2:-59362946 None:intergenic
GGTGAGACTGCGTGTTTACG+TGG 0.629689 4_2:+59361572 Msa0611240:CDS
CAATTGTTAACATGATGCAA+GGG 0.631076 4_2:+59361453 Msa0611240:CDS
GAGACGCCGGCTTATATCTG+AGG 0.637714 4_2:+59363077 Msa0611240:CDS
CAGGACATGAACCTGCAGGT+TGG 0.639313 4_2:+59362698 Msa0611240:CDS
AAAGGTAAAGAAACTGGTAT+CGG 0.639351 4_2:+59361875 Msa0611240:CDS
TAGAGCTGCTAATCCTAGAG+TGG 0.639565 4_2:+59362564 Msa0611240:CDS
CTAGATCCGATCCAGGATGG+AGG 0.640498 4_2:-59362763 None:intergenic
AGAGAGCTGGGTATTTGATG+CGG 0.644067 4_2:-59362421 None:intergenic
CTCCTATCAAAGTTTCGTAG+AGG 0.644531 4_2:-59362316 None:intergenic
GTGCCCAATTTGCAAAACAA+CGG 0.647258 4_2:+59364451 Msa0611240:CDS
ATTGCTAACTCATCTGATCG+CGG 0.649060 4_2:+59361851 Msa0611240:CDS
GGGTGAGAACTTACGAGCTG+AGG 0.649232 4_2:+59363471 Msa0611240:CDS
GAGAGATTCTCCTCGTCACG+AGG 0.654973 4_2:-59364480 None:intergenic
GTCCTGCTAGCAATGCGGAG+GGG 0.658388 4_2:+59363451 Msa0611240:CDS
TCATTTATGACGGAGAGAAG+GGG 0.659104 4_2:+59362997 Msa0611240:CDS
TCTATGCAACTGTGTACTGG+AGG 0.660737 4_2:+59362082 Msa0611240:CDS
GATCCTGAATTGAAATGGGT+GGG 0.664031 4_2:-59359629 None:intergenic
AGATCCTGAATTGAAATGGG+TGG 0.665505 4_2:-59359630 None:intergenic
GTATTGCGGAAAATGTGGAA+AGG 0.668186 4_2:+59362293 Msa0611240:CDS
CATACCTGACAGATACAGCA+AGG 0.680407 4_2:-59364241 None:intergenic
TTTATGACGGAGAGAAGGGG+TGG 0.681408 4_2:+59363000 Msa0611240:CDS
CTCTCAATTTAACATCAACA+GGG 0.682031 4_2:+59362371 Msa0611240:CDS
ATGGGTGGGTGAGAGTTCTG+AGG 0.683665 4_2:-59359615 None:intergenic
AGCAATGTGAACAATGCTGG+AGG 0.684313 4_2:+59362733 Msa0611240:CDS
TGTTGATAACATGTCTTACG+AGG 0.689280 4_2:+59364015 Msa0611240:CDS
TGAGGATGGTCTAAGACCCG+AGG 0.700114 4_2:+59361727 Msa0611240:CDS
GCCAAGTCCTGCTAGCAATG+CGG 0.702352 4_2:+59363446 Msa0611240:CDS
ATAAATGGATATGATATGTG+AGG 0.706368 4_2:-59364506 None:intergenic
ACTGTGTGATGCAGTTACTG+TGG 0.719811 4_2:-59364409 None:intergenic
ACAGTAACTGCATCACACAG+TGG 0.758156 4_2:+59364411 Msa0611240:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTACAAAAGTT+CGG + chr4_2:59359745-59359764 Msa0611240:intron 10.0%
!! TATATATATTTCAAACAAAA+GGG - chr4_2:59359937-59359956 None:intergenic 10.0%
!!! CTCTAAAAAAATCTTAAATT+AGG + chr4_2:59359391-59359410 Msa0611240:five_prime_UTR 15.0%
!! GTATATATATTTCAAACAAA+AGG - chr4_2:59359938-59359957 None:intergenic 15.0%
!!! TTTTTATTTTTGTTTGGATT+TGG + chr4_2:59360017-59360036 Msa0611240:intron 15.0%
!! AAAAATGTAATCAATAATTC+TGG + chr4_2:59363747-59363766 Msa0611240:intron 15.0%
!! TGAACTAAATAACTAATATA+CGG - chr4_2:59363814-59363833 None:intergenic 15.0%
!! AAAAGATAAAAACTGATAAA+TGG - chr4_2:59364524-59364543 None:intergenic 15.0%
!! TAGACATAAAAAAGAAATAT+TGG + chr4_2:59364624-59364643 Msa0611240:three_prime_UTR 15.0%
!! AATTGTGCATGAAATATAAT+GGG - chr4_2:59359879-59359898 None:intergenic 20.0%
!! AAATTGTGCATGAAATATAA+TGG - chr4_2:59359880-59359899 None:intergenic 20.0%
!!! TTTGGTTTATTATACTTTCA+AGG + chr4_2:59360035-59360054 Msa0611240:intron 20.0%
!! AAGAAGAATGTAATTCATTT+AGG - chr4_2:59360745-59360764 None:intergenic 20.0%
!!! AAATGTGCATATTATTTTCT+TGG - chr4_2:59361150-59361169 None:intergenic 20.0%
!! ACATAAAAAAGAAATATTGG+TGG + chr4_2:59364627-59364646 Msa0611240:three_prime_UTR 20.0%
!! TTACATTTATACTGTGATAA+TGG + chr4_2:59364668-59364687 Msa0611240:three_prime_UTR 20.0%
! AAAAGAGAGAGAGTAATTAA+AGG - chr4_2:59359454-59359473 None:intergenic 25.0%
!!! TACAAAAGTTCGGTTTTTTT+AGG + chr4_2:59359755-59359774 Msa0611240:intron 25.0%
! ATATTTCAAACAAAAGGGTA+GGG - chr4_2:59359932-59359951 None:intergenic 25.0%
! TATATTTCAAACAAAAGGGT+AGG - chr4_2:59359933-59359952 None:intergenic 25.0%
! GTTTATTATACTTTCAAGGA+AGG + chr4_2:59360039-59360058 Msa0611240:intron 25.0%
! AAGGTTACGAATTGTTTATT+GGG + chr4_2:59360058-59360077 Msa0611240:intron 25.0%
!! ATGTTGTGCTTATGTATTTT+AGG + chr4_2:59360155-59360174 Msa0611240:intron 25.0%
!! TTATTAGTCATTTAGCTTCT+TGG + chr4_2:59360383-59360402 Msa0611240:intron 25.0%
! TGAAATTGGTTAAAATGCAT+TGG - chr4_2:59360416-59360435 None:intergenic 25.0%
! AAGAATGTAATTCATTTAGG+AGG - chr4_2:59360742-59360761 None:intergenic 25.0%
!! ATTACATTCTTCTTTTGCTT+TGG + chr4_2:59360751-59360770 Msa0611240:intron 25.0%
!! TTTATTTCTTCTCATTTCTC+TGG + chr4_2:59361066-59361085 Msa0611240:intron 25.0%
!! TGTTTTCTGCTCATTAATTT+AGG + chr4_2:59361375-59361394 Msa0611240:intron 25.0%
! AAGTTCTTCTTTAGCTAATT+GGG + chr4_2:59362024-59362043 Msa0611240:CDS 25.0%
!!! TGCTTATTTTTAGCTAAATG+TGG + chr4_2:59363379-59363398 Msa0611240:intron 25.0%
! CATCAAGTGTAATAAAATGA+TGG - chr4_2:59363578-59363597 None:intergenic 25.0%
! AAAATGCTTATAGTAGAATC+AGG + chr4_2:59363663-59363682 Msa0611240:intron 25.0%
! AACATATCTTTGTATCATAC+TGG - chr4_2:59364284-59364303 None:intergenic 25.0%
! GTATGATACAAAGATATGTT+TGG + chr4_2:59364284-59364303 Msa0611240:intron 25.0%
! ATAAATGGATATGATATGTG+AGG - chr4_2:59364509-59364528 None:intergenic 25.0%
!! AGTGCTTTTAGATATCATAA+AGG - chr4_2:59364706-59364725 None:intergenic 25.0%
GAAAAGATATGCTTATGCTT+TGG - chr4_2:59359364-59359383 None:intergenic 30.0%
!!! TATTGCCTTTTTTTCTCACT+CGG + chr4_2:59359477-59359496 Msa0611240:five_prime_UTR 30.0%
TATTACCGAGTGAGAAAAAA+AGG - chr4_2:59359485-59359504 None:intergenic 30.0%
AAGAGATCCTGAATTGAAAT+GGG - chr4_2:59359636-59359655 None:intergenic 30.0%
AAAGAGATCCTGAATTGAAA+TGG - chr4_2:59359637-59359656 None:intergenic 30.0%
GAAGAAAAAATCATTACCAG+AGG - chr4_2:59359661-59359680 None:intergenic 30.0%
!!! AAAAGTTCGGTTTTTTTAGG+AGG + chr4_2:59359758-59359777 Msa0611240:intron 30.0%
!! AGTTCTTGCATCGTTTTTAT+CGG + chr4_2:59359829-59359848 Msa0611240:intron 30.0%
GAAGGTTACGAATTGTTTAT+TGG + chr4_2:59360057-59360076 Msa0611240:intron 30.0%
ACATAAGCACAACATTAATC+AGG - chr4_2:59360150-59360169 None:intergenic 30.0%
! GCATATTTAGTTTCTCTCTT+TGG + chr4_2:59360180-59360199 Msa0611240:intron 30.0%
!! TAGAGATTTTGATGTTCGTA+AGG + chr4_2:59360227-59360246 Msa0611240:intron 30.0%
CAATTATCTTGTGCTGAAAT+TGG - chr4_2:59360430-59360449 None:intergenic 30.0%
CAATTTCAGCACAAGATAAT+TGG + chr4_2:59360428-59360447 Msa0611240:intron 30.0%
!! GTTGAGTTTTATGAACTAGT+TGG + chr4_2:59360450-59360469 Msa0611240:intron 30.0%
TTTCTTTCTTTCTCTCTGTT+TGG + chr4_2:59360506-59360525 Msa0611240:intron 30.0%
!! CTAGGTGTGACATTTATTTT+CGG + chr4_2:59360655-59360674 Msa0611240:intron 30.0%
ACACTAAGTTAAATACGATG+TGG - chr4_2:59360809-59360828 None:intergenic 30.0%
TAAATTCATTTGCCAGCTAT+TGG - chr4_2:59360841-59360860 None:intergenic 30.0%
! CTGGCAAATGAATTTAAAGT+TGG + chr4_2:59360845-59360864 Msa0611240:intron 30.0%
! AAGTTAGTTTCCTCTTATCT+TGG + chr4_2:59360882-59360901 Msa0611240:intron 30.0%
AAAACTAGACATGCAAAAGT+GGG + chr4_2:59360908-59360927 Msa0611240:intron 30.0%
! ATTCATGTGTTACTACTTAC+TGG + chr4_2:59361176-59361195 Msa0611240:intron 30.0%
TTTCTGCTCATTAATTTAGG+TGG + chr4_2:59361378-59361397 Msa0611240:intron 30.0%
TTCTGCTCATTAATTTAGGT+GGG + chr4_2:59361379-59361398 Msa0611240:intron 30.0%
GCATCATGTTAACAATTGTT+GGG - chr4_2:59361451-59361470 None:intergenic 30.0%
TGCATCATGTTAACAATTGT+TGG - chr4_2:59361452-59361471 None:intergenic 30.0%
ACAATTGTTAACATGATGCA+AGG + chr4_2:59361452-59361471 Msa0611240:CDS 30.0%
CAATTGTTAACATGATGCAA+GGG + chr4_2:59361453-59361472 Msa0611240:CDS 30.0%
! ATGGTCTAAAATCTGAACAA+AGG + chr4_2:59361678-59361697 Msa0611240:CDS 30.0%
CATACCAAAATTAATACCCT+GGG - chr4_2:59361825-59361844 None:intergenic 30.0%
AAAGGTAAAGAAACTGGTAT+CGG + chr4_2:59361875-59361894 Msa0611240:CDS 30.0%
! GTTAATAACAACGATCCTTT+TGG + chr4_2:59361899-59361918 Msa0611240:CDS 30.0%
TTCTCTCTATCTAATCCAAA+AGG - chr4_2:59361917-59361936 None:intergenic 30.0%
AGTTCTTCATTCAACCAAAT+AGG + chr4_2:59361950-59361969 Msa0611240:CDS 30.0%
CAAGTTCTTCTTTAGCTAAT+TGG + chr4_2:59362023-59362042 Msa0611240:CDS 30.0%
AGTTCTTCTTTAGCTAATTG+GGG + chr4_2:59362025-59362044 Msa0611240:CDS 30.0%
TTGCATAGAACTATCTTCAA+GGG - chr4_2:59362071-59362090 None:intergenic 30.0%
! ACCATTTTCAGATTGTACAA+GGG - chr4_2:59362119-59362138 None:intergenic 30.0%
! AACCATTTTCAGATTGTACA+AGG - chr4_2:59362120-59362139 None:intergenic 30.0%
TACAATCTGAAAATGGTTAC+TGG + chr4_2:59362122-59362141 Msa0611240:CDS 30.0%
TTTCTTGTATTCTGCTGAAA+TGG - chr4_2:59362229-59362248 None:intergenic 30.0%
CTCTCAATTTAACATCAACA+GGG + chr4_2:59362371-59362390 Msa0611240:CDS 30.0%
TTAACGAATCCTTGGATTTA+AGG + chr4_2:59362449-59362468 Msa0611240:CDS 30.0%
CTAAATATATCAGTATAGCC+TGG + chr4_2:59363186-59363205 Msa0611240:intron 30.0%
TGGAACATAGAATAACTACA+TGG - chr4_2:59363421-59363440 None:intergenic 30.0%
CCTCAGATAAAAGAGAAATA+GGG - chr4_2:59363613-59363632 None:intergenic 30.0%
!! CCTATTTCTCTTTTATCTGA+GGG + chr4_2:59363611-59363630 Msa0611240:intron 30.0%
TTGTTATAATTGCTGCATAC+TGG - chr4_2:59363695-59363714 None:intergenic 30.0%
TCAACTCGCATTCAATTTAT+GGG - chr4_2:59363724-59363743 None:intergenic 30.0%
TTCAACTCGCATTCAATTTA+TGG - chr4_2:59363725-59363744 None:intergenic 30.0%
! ATAAATTGAATGCGAGTTGA+AGG + chr4_2:59363724-59363743 Msa0611240:intron 30.0%
! GTTCACAATTCTTTTCATGT+TGG + chr4_2:59363829-59363848 Msa0611240:intron 30.0%
AAGACATGTTATCAACATCA+AGG - chr4_2:59364012-59364031 None:intergenic 30.0%
CGAGGTAAAAAGATGATATA+TGG + chr4_2:59364033-59364052 Msa0611240:intron 30.0%
GAGAGAGAGTAATTAAAGGA+AGG - chr4_2:59359450-59359469 None:intergenic 35.0%
!! CGTTTTTATCGGTGTTTTGT+TGG + chr4_2:59359840-59359859 Msa0611240:intron 35.0%
!! TTTTATCGGTGTTTTGTTGG+AGG + chr4_2:59359843-59359862 Msa0611240:intron 35.0%
! AGTTTGTGTGTGTGAGTTTT+AGG + chr4_2:59360309-59360328 Msa0611240:intron 35.0%
TTATTGATCTGTAGACGAAG+TGG - chr4_2:59360344-59360363 None:intergenic 35.0%
CAAGACATAATCTTACTGCA+AGG - chr4_2:59360576-59360595 None:intergenic 35.0%
!!! GGTCTAAGGATTTTAAGACT+AGG + chr4_2:59360637-59360656 Msa0611240:intron 35.0%
AAGCACTATAAAAGGGGAAA+AGG - chr4_2:59360704-59360723 None:intergenic 35.0%
! TTTTCCCCTTTTATAGTGCT+TGG + chr4_2:59360703-59360722 Msa0611240:intron 35.0%
! TTTCCCCTTTTATAGTGCTT+GGG + chr4_2:59360704-59360723 Msa0611240:intron 35.0%
CATTTAGGAGGTTGTATAGA+AGG - chr4_2:59360730-59360749 None:intergenic 35.0%
! TGTATCGATAATCCAATAGC+TGG + chr4_2:59360826-59360845 Msa0611240:intron 35.0%
TTAGTTTCCTCTTATCTTGG+TGG + chr4_2:59360885-59360904 Msa0611240:intron 35.0%
! TAGTTTTCCACCAAGATAAG+AGG - chr4_2:59360895-59360914 None:intergenic 35.0%
GAAAACTAGACATGCAAAAG+TGG + chr4_2:59360907-59360926 Msa0611240:intron 35.0%
AAACTAGACATGCAAAAGTG+GGG + chr4_2:59360909-59360928 Msa0611240:intron 35.0%
ACAAATGTCATTGTCATGCT+TGG + chr4_2:59360946-59360965 Msa0611240:intron 35.0%
! ATTAAAGCTGTGAGTTTTCC+TGG + chr4_2:59361017-59361036 Msa0611240:intron 35.0%
TTTATGAGTAGATTGTCACC+AGG - chr4_2:59361038-59361057 None:intergenic 35.0%
TAATTTCTGATTCCGTGGTA+AGG - chr4_2:59361122-59361141 None:intergenic 35.0%
ACCACGGAATCAGAAATTAT+TGG + chr4_2:59361123-59361142 Msa0611240:intron 35.0%
ACCAATAATTTCTGATTCCG+TGG - chr4_2:59361127-59361146 None:intergenic 35.0%
AATCTCCAGCTATGTATAAG+AGG - chr4_2:59361340-59361359 None:intergenic 35.0%
TCTGCTCATTAATTTAGGTG+GGG + chr4_2:59361380-59361399 Msa0611240:intron 35.0%
!! GGTAACTTGATTTTGATGCA+AGG + chr4_2:59361401-59361420 Msa0611240:exon 35.0%
!! TGATTTTGATGCAAGGTCAA+AGG + chr4_2:59361408-59361427 Msa0611240:exon 35.0%
CATGTTAACAATTGTTGGGA+AGG - chr4_2:59361447-59361466 None:intergenic 35.0%
CAAAAAGGAAGGATGAATTC+TGG - chr4_2:59361777-59361796 None:intergenic 35.0%
! ATTCATCCTTCCTTTTTGCA+AGG + chr4_2:59361779-59361798 Msa0611240:CDS 35.0%
!! ACATCCCAGGGTATTAATTT+TGG + chr4_2:59361818-59361837 Msa0611240:CDS 35.0%
CCATACCAAAATTAATACCC+TGG - chr4_2:59361826-59361845 None:intergenic 35.0%
!! CCAGGGTATTAATTTTGGTA+TGG + chr4_2:59361823-59361842 Msa0611240:CDS 35.0%
GATAGAGAGAAGACATCAAT+TGG + chr4_2:59361926-59361945 Msa0611240:CDS 35.0%
GTTGCATAGAACTATCTTCA+AGG - chr4_2:59362072-59362091 None:intergenic 35.0%
TCCCTTGTACAATCTGAAAA+TGG + chr4_2:59362115-59362134 Msa0611240:CDS 35.0%
TCTGTTGATCTTAATGTTCC+TGG + chr4_2:59362154-59362173 Msa0611240:CDS 35.0%
TTGTATTCTGCTGAAATGGA+GGG - chr4_2:59362225-59362244 None:intergenic 35.0%
TTCCAATGCATTTCCTTCAA+TGG + chr4_2:59362267-59362286 Msa0611240:CDS 35.0%
TACCATTGAAGGAAATGCAT+TGG - chr4_2:59362272-59362291 None:intergenic 35.0%
! TCCTTCAATGGTAAGTATTG+CGG + chr4_2:59362279-59362298 Msa0611240:CDS 35.0%
! AAATTGAGAGGTACAGATTC+CGG - chr4_2:59362361-59362380 None:intergenic 35.0%
CCTGTTGATGTTAAATTGAG+AGG - chr4_2:59362373-59362392 None:intergenic 35.0%
CCTCTCAATTTAACATCAAC+AGG + chr4_2:59362370-59362389 Msa0611240:CDS 35.0%
TCTCTCATTTAACGAATCCT+TGG + chr4_2:59362441-59362460 Msa0611240:CDS 35.0%
GCTATAAGAACTTGAAGATC+TGG - chr4_2:59362590-59362609 None:intergenic 35.0%
! TCTTCAAGTTCTTATAGCTC+AGG + chr4_2:59362592-59362611 Msa0611240:CDS 35.0%
TTAAGAATCTTCCCAAGAGA+TGG + chr4_2:59362643-59362662 Msa0611240:CDS 35.0%
! CTCTCTGTAGATTTTCTGAT+GGG - chr4_2:59362840-59362859 None:intergenic 35.0%
! ACTCTCTGTAGATTTTCTGA+TGG - chr4_2:59362841-59362860 None:intergenic 35.0%
TCAGCATCTAGTACTCATAA+TGG + chr4_2:59362901-59362920 Msa0611240:CDS 35.0%
! ATAAATGATGGTCTTGGATG+TGG - chr4_2:59362985-59363004 None:intergenic 35.0%
TCCAAGACCATCATTTATGA+CGG + chr4_2:59362987-59363006 Msa0611240:CDS 35.0%
! ATCATTTATGACGGAGAGAA+GGG + chr4_2:59362996-59363015 Msa0611240:CDS 35.0%
AACATTACCCTTTGACAATG+AGG + chr4_2:59363053-59363072 Msa0611240:CDS 35.0%
ACATTACCCTTTGACAATGA+GGG + chr4_2:59363054-59363073 Msa0611240:CDS 35.0%
AGAATACCTCAGATATAAGC+CGG - chr4_2:59363086-59363105 None:intergenic 35.0%
GAAATATCATCATACCAGCA+TGG - chr4_2:59363162-59363181 None:intergenic 35.0%
GTTGTCTGAATTCTAAATCC+AGG - chr4_2:59363207-59363226 None:intergenic 35.0%
! GGATTTAGAATTCAGACAAC+AGG + chr4_2:59363207-59363226 Msa0611240:intron 35.0%
ATACGATAAACAGTATAGCC+TGG + chr4_2:59363271-59363290 Msa0611240:intron 35.0%
GTATAGCCTGGTAATACTTA+TGG + chr4_2:59363283-59363302 Msa0611240:intron 35.0%
TCAAGACCATAAGTATTACC+AGG - chr4_2:59363292-59363311 None:intergenic 35.0%
! ACTACATGGTTAGTTCATGT+AGG - chr4_2:59363407-59363426 None:intergenic 35.0%
TGATTTCACGACACAACATA+TGG - chr4_2:59363537-59363556 None:intergenic 35.0%
!! CCCTATTTCTCTTTTATCTG+AGG + chr4_2:59363610-59363629 Msa0611240:intron 35.0%
CCCTCAGATAAAAGAGAAAT+AGG - chr4_2:59363614-59363633 None:intergenic 35.0%
CAACTCGCATTCAATTTATG+GGG - chr4_2:59363723-59363742 None:intergenic 35.0%
TAGCATTCTCAATAGTCTAC+AGG - chr4_2:59363877-59363896 None:intergenic 35.0%
ACAATGCAAATGTAGGTCAA+AGG - chr4_2:59363915-59363934 None:intergenic 35.0%
AATCCTGACAATGCAAATGT+AGG - chr4_2:59363922-59363941 None:intergenic 35.0%
!! TGTTGATAACATGTCTTACG+AGG + chr4_2:59364015-59364034 Msa0611240:CDS 35.0%
ACTTGGATTACAGGAATTGT+TGG + chr4_2:59364102-59364121 Msa0611240:intron 35.0%
ATTACAGGAATTGTTGGCAT+TGG + chr4_2:59364108-59364127 Msa0611240:intron 35.0%
TATCTGTCAGGTATGAGAAA+TGG + chr4_2:59364249-59364268 Msa0611240:intron 35.0%
! TATGTTGATGGACAGAATCT+CGG + chr4_2:59364362-59364381 Msa0611240:CDS 35.0%
ATGGATATGATATGTGAGGA+GGG - chr4_2:59364505-59364524 None:intergenic 35.0%
AATGGATATGATATGTGAGG+AGG - chr4_2:59364506-59364525 None:intergenic 35.0%
AACTTCCTCTCATCTTAGAT+TGG + chr4_2:59364578-59364597 Msa0611240:three_prime_UTR 35.0%
ACTTCCTCTCATCTTAGATT+GGG + chr4_2:59364579-59364598 Msa0611240:three_prime_UTR 35.0%
! TTGGTGGTTAAGCTATATAG+TGG + chr4_2:59364643-59364662 Msa0611240:three_prime_UTR 35.0%
GATCCTGAATTGAAATGGGT+GGG - chr4_2:59359632-59359651 None:intergenic 40.0%
AGATCCTGAATTGAAATGGG+TGG - chr4_2:59359633-59359652 None:intergenic 40.0%
! ATTCAGGATCTCTTTTCCTC+TGG + chr4_2:59359642-59359661 Msa0611240:five_prime_UTR 40.0%
!!! AGTTCGGTTTTTTTAGGAGG+TGG + chr4_2:59359761-59359780 Msa0611240:intron 40.0%
!!! TTGTGTGTGTGAGTTTTAGG+TGG + chr4_2:59360312-59360331 Msa0611240:intron 40.0%
GGGTACACAACAAATGTAGA+GGG - chr4_2:59360533-59360552 None:intergenic 40.0%
AGGGTACACAACAAATGTAG+AGG - chr4_2:59360534-59360553 None:intergenic 40.0%
CTTACTGCAAGGAAATCAGT+AGG - chr4_2:59360565-59360584 None:intergenic 40.0%
GACCAAGTGAGCTATAAGTT+GGG - chr4_2:59360621-59360640 None:intergenic 40.0%
AGACCAAGTGAGCTATAAGT+TGG - chr4_2:59360622-59360641 None:intergenic 40.0%
CTTATAGCTCACTTGGTCTA+AGG + chr4_2:59360623-59360642 Msa0611240:intron 40.0%
!! GGTGTGACATTTATTTTCGG+AGG + chr4_2:59360658-59360677 Msa0611240:intron 40.0%
AAGGCCCAAGCACTATAAAA+GGG - chr4_2:59360711-59360730 None:intergenic 40.0%
CCACAAAGCTATGAGATTCA+CGG - chr4_2:59360777-59360796 None:intergenic 40.0%
AACTAGACATGCAAAAGTGG+GGG + chr4_2:59360910-59360929 Msa0611240:intron 40.0%
TCATTGTCATGCTTGGTATG+TGG + chr4_2:59360953-59360972 Msa0611240:intron 40.0%
CATTGTCATGCTTGGTATGT+GGG + chr4_2:59360954-59360973 Msa0611240:intron 40.0%
ATTGTCATGCTTGGTATGTG+GGG + chr4_2:59360955-59360974 Msa0611240:intron 40.0%
ATGCATGAGTTACGACACAT+AGG - chr4_2:59361287-59361306 None:intergenic 40.0%
! TAAGAGGCACAAAAGAGTCA+TGG - chr4_2:59361324-59361343 None:intergenic 40.0%
TTGTGCCTCTTATACATAGC+TGG + chr4_2:59361332-59361351 Msa0611240:intron 40.0%
! TTTTGATGCAAGGTCAAAGG+AGG + chr4_2:59361411-59361430 Msa0611240:exon 40.0%
AAGGTCAAAGGAGGACTATT+GGG + chr4_2:59361420-59361439 Msa0611240:CDS 40.0%
! ATATCAGTGCCGTTAGAACT+AGG - chr4_2:59361479-59361498 None:intergenic 40.0%
! TGCATTTTGCGCATGATTCA+AGG - chr4_2:59361516-59361535 None:intergenic 40.0%
CGCAAAATGCAGTAGATTTC+CGG + chr4_2:59361525-59361544 Msa0611240:CDS 40.0%
ATTTCCGGCTGTCAGATTAT+AGG + chr4_2:59361540-59361559 Msa0611240:CDS 40.0%
TTTCCGGCTGTCAGATTATA+GGG + chr4_2:59361541-59361560 Msa0611240:CDS 40.0%
! GGTCCTAATGTGAGCTTTAA+TGG + chr4_2:59361599-59361618 Msa0611240:CDS 40.0%
CAGCCATTAAAGCTCACATT+AGG - chr4_2:59361605-59361624 None:intergenic 40.0%
! CTAATGTGAGCTTTAATGGC+TGG + chr4_2:59361603-59361622 Msa0611240:CDS 40.0%
! AGCTTTAATGGCTGGAATAC+CGG + chr4_2:59361611-59361630 Msa0611240:CDS 40.0%
! TTAGACCATCATCGTTGACT+TGG - chr4_2:59361667-59361686 None:intergenic 40.0%
AGGAAGGATGAATTCTGGAT+TGG - chr4_2:59361772-59361791 None:intergenic 40.0%
AATACCCTGGGATGTATGAT+TGG - chr4_2:59361813-59361832 None:intergenic 40.0%
ATTGCTAACTCATCTGATCG+CGG + chr4_2:59361851-59361870 Msa0611240:CDS 40.0%
! TTGCTGATGAAGCACCTATT+TGG - chr4_2:59361967-59361986 None:intergenic 40.0%
! TTCAAGGGTCTTTCTTTTGC+AGG - chr4_2:59362056-59362075 None:intergenic 40.0%
AGTTCTATGCAACTGTGTAC+TGG + chr4_2:59362079-59362098 Msa0611240:CDS 40.0%
CTTAATGTTCCTGGAAGCTT+AGG + chr4_2:59362163-59362182 Msa0611240:CDS 40.0%
! AGGTGATTTGTCACCTTTAG+AGG + chr4_2:59362183-59362202 Msa0611240:CDS 40.0%
GTAACACGGAAATCCTCTAA+AGG - chr4_2:59362199-59362218 None:intergenic 40.0%
CTTGTATTCTGCTGAAATGG+AGG - chr4_2:59362226-59362245 None:intergenic 40.0%
TCCGCAATACTTACCATTGA+AGG - chr4_2:59362283-59362302 None:intergenic 40.0%
! GGTAAGTATTGCGGAAAATG+TGG + chr4_2:59362288-59362307 Msa0611240:CDS 40.0%
GTATTGCGGAAAATGTGGAA+AGG + chr4_2:59362293-59362312 Msa0611240:CDS 40.0%
CTCCTATCAAAGTTTCGTAG+AGG - chr4_2:59362319-59362338 None:intergenic 40.0%
AATGACCCATCTACATCATC+CGG + chr4_2:59362339-59362358 Msa0611240:CDS 40.0%
AGATTCCGGATGATGTAGAT+GGG - chr4_2:59362347-59362366 None:intergenic 40.0%
TCGTTAAATGAGAGAGAGCT+GGG - chr4_2:59362436-59362455 None:intergenic 40.0%
TTCGTTAAATGAGAGAGAGC+TGG - chr4_2:59362437-59362456 None:intergenic 40.0%
AGCTGCTAACCTTAAATCCA+AGG - chr4_2:59362461-59362480 None:intergenic 40.0%
! TTGGATTTAAGGTTAGCAGC+TGG + chr4_2:59362460-59362479 Msa0611240:CDS 40.0%
TCTAGCAATGTGAACAATGC+TGG + chr4_2:59362730-59362749 Msa0611240:CDS 40.0%
TTAAATGTCCAGCTGGGATT+AGG - chr4_2:59362808-59362827 None:intergenic 40.0%
TCATGGTTAAATGTCCAGCT+GGG - chr4_2:59362814-59362833 None:intergenic 40.0%
TTCATGGTTAAATGTCCAGC+TGG - chr4_2:59362815-59362834 None:intergenic 40.0%
! GATTTTCTGATGGGACTTCA+TGG - chr4_2:59362831-59362850 None:intergenic 40.0%
TGAGCTGATTGAGGGAAAAA+GGG - chr4_2:59362884-59362903 None:intergenic 40.0%
AACCCTGAGAAAATGAAGGA+GGG - chr4_2:59362948-59362967 None:intergenic 40.0%
CTAGAACCCTGAGAAAATGA+AGG - chr4_2:59362952-59362971 None:intergenic 40.0%
TCCGTCATAAATGATGGTCT+TGG - chr4_2:59362991-59363010 None:intergenic 40.0%
CTTCTCTCCGTCATAAATGA+TGG - chr4_2:59362997-59363016 None:intergenic 40.0%
! CATCATTTATGACGGAGAGA+AGG + chr4_2:59362995-59363014 Msa0611240:CDS 40.0%
! TCATTTATGACGGAGAGAAG+GGG + chr4_2:59362997-59363016 Msa0611240:CDS 40.0%
GGTAATGTTCGCAATGAATG+AGG - chr4_2:59363042-59363061 None:intergenic 40.0%
CATTACCCTTTGACAATGAG+GGG + chr4_2:59363055-59363074 Msa0611240:CDS 40.0%
TATGCTGTACTTCTGCTTGA+AGG + chr4_2:59363131-59363150 Msa0611240:intron 40.0%
TGTCGTGAAATCAGTATTCG+AGG + chr4_2:59363544-59363563 Msa0611240:intron 40.0%
TGACCTACATTTGCATTGTC+AGG + chr4_2:59363916-59363935 Msa0611240:intron 40.0%
TTTGACCCGTTCCTATATCA+TGG + chr4_2:59363950-59363969 Msa0611240:CDS 40.0%
TTTCAGCCATGCCATGATAT+AGG - chr4_2:59363964-59363983 None:intergenic 40.0%
!! CGTTAGTTCTGACTTCAACT+TGG + chr4_2:59364085-59364104 Msa0611240:intron 40.0%
CTGACTTCAACTTGGATTAC+AGG + chr4_2:59364093-59364112 Msa0611240:intron 40.0%
ACTTGTTCTTCCATGATCGT+AGG + chr4_2:59364334-59364353 Msa0611240:intron 40.0%
ACATATTCCTCCTACGATCA+TGG - chr4_2:59364347-59364366 None:intergenic 40.0%
TCGTAGGAGGAATATGTTGA+TGG + chr4_2:59364350-59364369 Msa0611240:intron 40.0%
GTGCCCAATTTGCAAAACAA+CGG + chr4_2:59364451-59364470 Msa0611240:CDS 40.0%
!! AGGCCGTTGTTTTGCAAATT+GGG - chr4_2:59364457-59364476 None:intergenic 40.0%
!! AAGGCCGTTGTTTTGCAAAT+TGG - chr4_2:59364458-59364477 None:intergenic 40.0%
AATTTGCAAAACAACGGCCT+TGG + chr4_2:59364457-59364476 Msa0611240:CDS 40.0%
TCACCCACCCATTTCAATTC+AGG + chr4_2:59359626-59359645 Msa0611240:five_prime_UTR 45.0%
CTGGAAATGCCGATATTGCT+AGG + chr4_2:59360260-59360279 Msa0611240:intron 45.0%
AAATGCCGATATTGCTAGGC+TGG + chr4_2:59360264-59360283 Msa0611240:intron 45.0%
GATGTCCAGCCTAGCAATAT+CGG - chr4_2:59360272-59360291 None:intergenic 45.0%
ACTCACACACACAAACTGCA+AGG - chr4_2:59360306-59360325 None:intergenic 45.0%
AAATCAGTAGGAGCTCGGAA+GGG - chr4_2:59360553-59360572 None:intergenic 45.0%
CAAGGAAATCAGTAGGAGCT+CGG - chr4_2:59360558-59360577 None:intergenic 45.0%
! CAAGTGAGCTATAAGTTGGG+TGG - chr4_2:59360618-59360637 None:intergenic 45.0%
CACCCAACTTATAGCTCACT+TGG + chr4_2:59360616-59360635 Msa0611240:intron 45.0%
GGGAAAAGGTTGCATCATGA+GGG - chr4_2:59360690-59360709 None:intergenic 45.0%
AGGCCCAAGCACTATAAAAG+GGG - chr4_2:59360710-59360729 None:intergenic 45.0%
GAAGGCCCAAGCACTATAAA+AGG - chr4_2:59360712-59360731 None:intergenic 45.0%
! CCGTGAATCTCATAGCTTTG+TGG + chr4_2:59360774-59360793 Msa0611240:intron 45.0%
ACTAGACATGCAAAAGTGGG+GGG + chr4_2:59360911-59360930 Msa0611240:intron 45.0%
CTGGTCTAGATCTCCGATTA+AGG + chr4_2:59361085-59361104 Msa0611240:intron 45.0%
GGAGCTCATGCATCCTTAAT+CGG - chr4_2:59361101-59361120 None:intergenic 45.0%
TCGTAACTCATGCATTCTGC+AGG + chr4_2:59361292-59361311 Msa0611240:intron 45.0%
CAAGGTCAAAGGAGGACTAT+TGG + chr4_2:59361419-59361438 Msa0611240:CDS 45.0%
!! ATGCAAGGGCCTAGTTCTAA+CGG + chr4_2:59361467-59361486 Msa0611240:CDS 45.0%
TTCCGGCTGTCAGATTATAG+GGG + chr4_2:59361542-59361561 Msa0611240:CDS 45.0%
TCAGATTATAGGGGGTCTTC+TGG + chr4_2:59361551-59361570 Msa0611240:CDS 45.0%
ACCAGATTCAGTCCAGAACT+GGG - chr4_2:59361641-59361660 None:intergenic 45.0%
GTCAACCAAGTCAACGATGA+TGG + chr4_2:59361659-59361678 Msa0611240:CDS 45.0%
! TTCATGCAGTGCTATTGCTG+AGG + chr4_2:59361709-59361728 Msa0611240:CDS 45.0%
CCAAGTAATTGCCTTTCCTC+GGG - chr4_2:59361746-59361765 None:intergenic 45.0%
CCCAAGTAATTGCCTTTCCT+CGG - chr4_2:59361747-59361766 None:intergenic 45.0%
CCGAGGAAAGGCAATTACTT+GGG + chr4_2:59361744-59361763 Msa0611240:CDS 45.0%
CTGGAACCTTGCAAAAAGGA+AGG - chr4_2:59361788-59361807 None:intergenic 45.0%
AGCTCCAATCATACATCCCA+GGG + chr4_2:59361806-59361825 Msa0611240:CDS 45.0%
TTGCTAACTCATCTGATCGC+GGG + chr4_2:59361852-59361871 Msa0611240:CDS 45.0%
! AGGGTCTTTCTTTTGCAGGA+AGG - chr4_2:59362052-59362071 None:intergenic 45.0%
TCTATGCAACTGTGTACTGG+AGG + chr4_2:59362082-59362101 Msa0611240:CDS 45.0%
GACAAATCACCTAAGCTTCC+AGG - chr4_2:59362175-59362194 None:intergenic 45.0%
! GAAATGGAGGGCTAGTAACA+CGG - chr4_2:59362213-59362232 None:intergenic 45.0%
GGCCTCTACGAAACTTTGAT+AGG + chr4_2:59362314-59362333 Msa0611240:CDS 45.0%
CAGATTCCGGATGATGTAGA+TGG - chr4_2:59362348-59362367 None:intergenic 45.0%
TGGGTATTTGATGCGGAGAA+GGG - chr4_2:59362417-59362436 None:intergenic 45.0%
AGAGAGCTGGGTATTTGATG+CGG - chr4_2:59362424-59362443 None:intergenic 45.0%
! GGATTAGCAGCTCTATTCCA+CGG - chr4_2:59362559-59362578 None:intergenic 45.0%
TAGAGCTGCTAATCCTAGAG+TGG + chr4_2:59362564-59362583 Msa0611240:CDS 45.0%
GAAGATGCAGGCATGTTCAT+GGG - chr4_2:59362679-59362698 None:intergenic 45.0%
TGAAGATGCAGGCATGTTCA+TGG - chr4_2:59362680-59362699 None:intergenic 45.0%
ATGAACATGCCTGCATCTTC+AGG + chr4_2:59362679-59362698 Msa0611240:CDS 45.0%
AGCAATGTGAACAATGCTGG+AGG + chr4_2:59362733-59362752 Msa0611240:CDS 45.0%
GTTTGAACTAGATCCGATCC+AGG - chr4_2:59362773-59362792 None:intergenic 45.0%
ATTGAGGGAAAAAGGGACCA+GGG - chr4_2:59362877-59362896 None:intergenic 45.0%
CTGAGCTGATTGAGGGAAAA+AGG - chr4_2:59362885-59362904 None:intergenic 45.0%
CTAGATGCTGAGCTGATTGA+GGG - chr4_2:59362892-59362911 None:intergenic 45.0%
ACTAGATGCTGAGCTGATTG+AGG - chr4_2:59362893-59362912 None:intergenic 45.0%
GAACCCTGAGAAAATGAAGG+AGG - chr4_2:59362949-59362968 None:intergenic 45.0%
CTGAGGGAGATACTCATCTT+CGG + chr4_2:59363627-59363646 Msa0611240:intron 45.0%
CCATGCCATGATATAGGAAC+GGG - chr4_2:59363958-59363977 None:intergenic 45.0%
GCCATGCCATGATATAGGAA+CGG - chr4_2:59363959-59363978 None:intergenic 45.0%
! ACAGGAATTGTTGGCATTGG+AGG + chr4_2:59364111-59364130 Msa0611240:intron 45.0%
CATACCTGACAGATACAGCA+AGG - chr4_2:59364244-59364263 None:intergenic 45.0%
TGTTCTTCCATGATCGTAGG+AGG + chr4_2:59364337-59364356 Msa0611240:intron 45.0%
!! AATCTCGGTTTGCTGGATTG+TGG + chr4_2:59364377-59364396 Msa0611240:CDS 45.0%
!! ATCTCGGTTTGCTGGATTGT+GGG + chr4_2:59364378-59364397 Msa0611240:CDS 45.0%
ACTGTGTGATGCAGTTACTG+TGG - chr4_2:59364412-59364431 None:intergenic 45.0%
ACAGTAACTGCATCACACAG+TGG + chr4_2:59364411-59364430 Msa0611240:CDS 45.0%
! CGTTCCCAATCTAAGATGAG+AGG - chr4_2:59364586-59364605 None:intergenic 45.0%
!!! ATTTAATTTTTATTTTTGTT+TGG + chr4_2:59360011-59360030 Msa0611240:intron 5.0%
TTCGTAAGGCCTAGCTCAAC+TGG + chr4_2:59360241-59360260 Msa0611240:intron 50.0%
TCGGCATTTCCAGTTGAGCT+AGG - chr4_2:59360253-59360272 None:intergenic 50.0%
GAAATCAGTAGGAGCTCGGA+AGG - chr4_2:59360554-59360573 None:intergenic 50.0%
GGGGAAAAGGTTGCATCATG+AGG - chr4_2:59360691-59360710 None:intergenic 50.0%
GATGCATGAGCTCCTTACCA+CGG + chr4_2:59361107-59361126 Msa0611240:intron 50.0%
TCCGGCTGTCAGATTATAGG+GGG + chr4_2:59361543-59361562 Msa0611240:CDS 50.0%
ACCCCCTATAATCTGACAGC+CGG - chr4_2:59361547-59361566 None:intergenic 50.0%
ACTGCGTGTTTACGTGGTAC+TGG + chr4_2:59361578-59361597 Msa0611240:CDS 50.0%
AATACCGGTGAACCCAGTTC+TGG + chr4_2:59361626-59361645 Msa0611240:CDS 50.0%
!! ACCCAGTTCTGGACTGAATC+TGG + chr4_2:59361637-59361656 Msa0611240:CDS 50.0%
GACCAGATTCAGTCCAGAAC+TGG - chr4_2:59361642-59361661 None:intergenic 50.0%
! TGCAGTGCTATTGCTGAGGA+TGG + chr4_2:59361713-59361732 Msa0611240:CDS 50.0%
! ATGGTCTAAGACCCGAGGAA+AGG + chr4_2:59361732-59361751 Msa0611240:CDS 50.0%
CCCGAGGAAAGGCAATTACT+TGG + chr4_2:59361743-59361762 Msa0611240:CDS 50.0%
GGAGCTGGAACCTTGCAAAA+AGG - chr4_2:59361792-59361811 None:intergenic 50.0%
CTGGGATGTATGATTGGAGC+TGG - chr4_2:59361807-59361826 None:intergenic 50.0%
CAGCTCCAATCATACATCCC+AGG + chr4_2:59361805-59361824 Msa0611240:CDS 50.0%
AACTCATCTGATCGCGGGAA+AGG + chr4_2:59361857-59361876 Msa0611240:CDS 50.0%
CGCGGGAAAGGTAAAGAAAC+TGG + chr4_2:59361869-59361888 Msa0611240:CDS 50.0%
GTGCTTCATCAGCAAGCTCT+GGG + chr4_2:59361972-59361991 Msa0611240:CDS 50.0%
!! ATCAGCAAGCTCTGGGTACA+TGG + chr4_2:59361979-59361998 Msa0611240:CDS 50.0%
!! AAGCTCTGGGTACATGGCTT+GGG + chr4_2:59361985-59362004 Msa0611240:CDS 50.0%
! TACATGGCTTGGGGAGATAG+TGG + chr4_2:59361995-59362014 Msa0611240:CDS 50.0%
CTGGGTATTTGATGCGGAGA+AGG - chr4_2:59362418-59362437 None:intergenic 50.0%
AAAGGATGCATGTGCAGGGA+TGG - chr4_2:59362535-59362554 None:intergenic 50.0%
CGGAAAAGGATGCATGTGCA+GGG - chr4_2:59362539-59362558 None:intergenic 50.0%
ACGGAAAAGGATGCATGTGC+AGG - chr4_2:59362540-59362559 None:intergenic 50.0%
! TGCACATGCATCCTTTTCCG+TGG + chr4_2:59362539-59362558 Msa0611240:CDS 50.0%
GCAGCTCTATTCCACGGAAA+AGG - chr4_2:59362553-59362572 None:intergenic 50.0%
CTTGAAGATCTGGCCACTCT+AGG - chr4_2:59362580-59362599 None:intergenic 50.0%
GATGCTCGGTACCATCTCTT+GGG - chr4_2:59362657-59362676 None:intergenic 50.0%
AGGCATGTTCATGGGATGCT+CGG - chr4_2:59362671-59362690 None:intergenic 50.0%
GGTTCATGTCCTGAAGATGC+AGG - chr4_2:59362691-59362710 None:intergenic 50.0%
TCTTCAGGACATGAACCTGC+AGG + chr4_2:59362694-59362713 Msa0611240:CDS 50.0%
GAAGATGCATACCAACCTGC+AGG - chr4_2:59362712-59362731 None:intergenic 50.0%
ATACCTCCTCCATCCTGGAT+CGG + chr4_2:59362757-59362776 Msa0611240:CDS 50.0%
GAACTAGATCCGATCCAGGA+TGG - chr4_2:59362769-59362788 None:intergenic 50.0%
GAGTTTCAGAGTTCAGTCCC+TGG + chr4_2:59362857-59362876 Msa0611240:CDS 50.0%
GATTGAGGGAAAAAGGGACC+AGG - chr4_2:59362878-59362897 None:intergenic 50.0%
CTGAGAAAATGAAGGAGGGC+CGG - chr4_2:59362944-59362963 None:intergenic 50.0%
! GGCCCTCCTTCATTTTCTCA+GGG + chr4_2:59362943-59362962 Msa0611240:CDS 50.0%
! TTTATGACGGAGAGAAGGGG+TGG + chr4_2:59363000-59363019 Msa0611240:CDS 50.0%
CGTCTCCCCTCATTGTCAAA+GGG - chr4_2:59363063-59363082 None:intergenic 50.0%
GCTTGAAGGATATGCCATGC+TGG + chr4_2:59363145-59363164 Msa0611240:intron 50.0%
!! GCATGCTTTGAAGCAAGCAC+AGG + chr4_2:59363851-59363870 Msa0611240:intron 50.0%
CCCGTTCCTATATCATGGCA+TGG + chr4_2:59363955-59363974 Msa0611240:CDS 50.0%
ACGTAGAGCAGCATTGCTGA+TGG - chr4_2:59364068-59364087 None:intergenic 50.0%
! TTGGCATTGGAGGAGCGTAT+AGG + chr4_2:59364121-59364140 Msa0611240:CDS 50.0%
CGTATAGGAGACGTAAGCAC+TGG + chr4_2:59364136-59364155 Msa0611240:CDS 50.0%
! CGAACCTTGCTGTATCTGTC+AGG + chr4_2:59364237-59364256 Msa0611240:CDS 50.0%
! TGGACAGAATCTCGGTTTGC+TGG + chr4_2:59364370-59364389 Msa0611240:CDS 50.0%
ATGGGTGGGTGAGAGTTCTG+AGG - chr4_2:59359618-59359637 None:intergenic 55.0%
GGTGAGACTGCGTGTTTACG+TGG + chr4_2:59361572-59361591 Msa0611240:CDS 55.0%
CAGTCCAGAACTGGGTTCAC+CGG - chr4_2:59361633-59361652 None:intergenic 55.0%
! TGAGGATGGTCTAAGACCCG+AGG + chr4_2:59361727-59361746 Msa0611240:CDS 55.0%
GGTGCTTCATCAGCAAGCTC+TGG + chr4_2:59361971-59361990 Msa0611240:CDS 55.0%
!! CAAGCTCTGGGTACATGGCT+TGG + chr4_2:59361984-59362003 Msa0611240:CDS 55.0%
!! AGCTCTGGGTACATGGCTTG+GGG + chr4_2:59361986-59362005 Msa0611240:CDS 55.0%
GGATGCTCGGTACCATCTCT+TGG - chr4_2:59362658-59362677 None:intergenic 55.0%
CAGGACATGAACCTGCAGGT+TGG + chr4_2:59362698-59362717 Msa0611240:CDS 55.0%
CTAGATCCGATCCAGGATGG+AGG - chr4_2:59362766-59362785 None:intergenic 55.0%
AGCTGGGATTAGGCAACGAG+TGG - chr4_2:59362798-59362817 None:intergenic 55.0%
ACTCGTTGCCTAATCCCAGC+TGG + chr4_2:59362797-59362816 Msa0611240:CDS 55.0%
GGCCATTCCTCCTCTACTTC+CGG + chr4_2:59362922-59362941 Msa0611240:CDS 55.0%
! CGGCCCTCCTTCATTTTCTC+AGG + chr4_2:59362942-59362961 Msa0611240:CDS 55.0%
GCGTCTCCCCTCATTGTCAA+AGG - chr4_2:59363064-59363083 None:intergenic 55.0%
TTGACAATGAGGGGAGACGC+CGG + chr4_2:59363064-59363083 Msa0611240:CDS 55.0%
!! GAGACGCCGGCTTATATCTG+AGG + chr4_2:59363077-59363096 Msa0611240:CDS 55.0%
CTAGCAGGACTTGGCGAATC+TGG - chr4_2:59363441-59363460 None:intergenic 55.0%
GCCAAGTCCTGCTAGCAATG+CGG + chr4_2:59363446-59363465 Msa0611240:CDS 55.0%
TCCGCATTGCTAGCAGGACT+TGG - chr4_2:59363450-59363469 None:intergenic 55.0%
AAGTCCTGCTAGCAATGCGG+AGG + chr4_2:59363449-59363468 Msa0611240:CDS 55.0%
AGTCCTGCTAGCAATGCGGA+GGG + chr4_2:59363450-59363469 Msa0611240:CDS 55.0%
GGGTGAGAACTTACGAGCTG+AGG + chr4_2:59363471-59363490 Msa0611240:CDS 55.0%
GAGAGATTCTCCTCGTCACG+AGG - chr4_2:59364483-59364502 None:intergenic 55.0%
AGGTTAGCAGCTGGAGCAGC+TGG + chr4_2:59362469-59362488 Msa0611240:CDS 60.0%
GCATGTGCAGGGATGGTGAC+TGG - chr4_2:59362528-59362547 None:intergenic 60.0%
GAGGCATACCTCCTCCATCC+TGG + chr4_2:59362752-59362771 Msa0611240:CDS 60.0%
GATCCGATCCAGGATGGAGG+AGG - chr4_2:59362763-59362782 None:intergenic 60.0%
GGCCGGAAGTAGAGGAGGAA+TGG - chr4_2:59362927-59362946 None:intergenic 60.0%
TGAAGGAGGGCCGGAAGTAG+AGG - chr4_2:59362935-59362954 None:intergenic 60.0%
GTCCTGCTAGCAATGCGGAG+GGG + chr4_2:59363451-59363470 Msa0611240:CDS 60.0%
TTCTCCTCGTCACGAGGCCA+AGG - chr4_2:59364477-59364496 None:intergenic 60.0%
AGGAGGGCCGGAAGTAGAGG+AGG - chr4_2:59362932-59362951 None:intergenic 65.0%
CACCCCTCCGCATTGCTAGC+AGG - chr4_2:59363456-59363475 None:intergenic 65.0%
ACGGCCTTGGCCTCGTGACG+AGG + chr4_2:59364470-59364489 Msa0611240:exon 70.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 59359347 59364753 59359347 ID=Msa0611240;Name=Msa0611240
chr4_2 mRNA 59359347 59364753 59359347 ID=Msa0611240-mRNA-1;Parent=Msa0611240;Name=Msa0611240-mRNA-1;_AED=0.08;_eAED=0.08;_QI=336|1|1|1|0.8|0.66|6|266|702
chr4_2 exon 59359347 59359663 59359347 ID=Msa0611240-mRNA-1:exon:15724;Parent=Msa0611240-mRNA-1
chr4_2 exon 59361397 59363098 59361397 ID=Msa0611240-mRNA-1:exon:15725;Parent=Msa0611240-mRNA-1
chr4_2 exon 59363442 59363492 59363442 ID=Msa0611240-mRNA-1:exon:15726;Parent=Msa0611240-mRNA-1
chr4_2 exon 59363938 59364036 59363938 ID=Msa0611240-mRNA-1:exon:15727;Parent=Msa0611240-mRNA-1
chr4_2 exon 59364115 59364258 59364115 ID=Msa0611240-mRNA-1:exon:15728;Parent=Msa0611240-mRNA-1
chr4_2 exon 59364356 59364753 59364356 ID=Msa0611240-mRNA-1:exon:15729;Parent=Msa0611240-mRNA-1
chr4_2 five_prime_UTR 59359347 59359663 59359347 ID=Msa0611240-mRNA-1:five_prime_utr;Parent=Msa0611240-mRNA-1
chr4_2 five_prime_UTR 59361397 59361415 59361397 ID=Msa0611240-mRNA-1:five_prime_utr;Parent=Msa0611240-mRNA-1
chr4_2 CDS 59361416 59363098 59361416 ID=Msa0611240-mRNA-1:cds;Parent=Msa0611240-mRNA-1
chr4_2 CDS 59363442 59363492 59363442 ID=Msa0611240-mRNA-1:cds;Parent=Msa0611240-mRNA-1
chr4_2 CDS 59363938 59364036 59363938 ID=Msa0611240-mRNA-1:cds;Parent=Msa0611240-mRNA-1
chr4_2 CDS 59364115 59364258 59364115 ID=Msa0611240-mRNA-1:cds;Parent=Msa0611240-mRNA-1
chr4_2 CDS 59364356 59364487 59364356 ID=Msa0611240-mRNA-1:cds;Parent=Msa0611240-mRNA-1
chr4_2 three_prime_UTR 59364488 59364753 59364488 ID=Msa0611240-mRNA-1:three_prime_utr;Parent=Msa0611240-mRNA-1
Gene Sequence

>Msa0611240

ATGCAAGGTCAAAGGAGGACTATTGGGTCCTTCCCAACAATTGTTAACATGATGCAAGGGCCTAGTTCTAACGGCACTGATATGAATCATCAGTCTTCCTTGAATCATGCGCAAAATGCAGTAGATTTCCGGCTGTCAGATTATAGGGGGTCTTCTGGTGAGACTGCGTGTTTACGTGGTACTGGTCCTAATGTGAGCTTTAATGGCTGGAATACCGGTGAACCCAGTTCTGGACTGAATCTGGTCAACCAAGTCAACGATGATGGTCTAAAATCTGAACAAAGGTTGTCTTCTTCATGCAGTGCTATTGCTGAGGATGGTCTAAGACCCGAGGAAAGGCAATTACTTGGGAACCAATCCAGAATTCATCCTTCCTTTTTGCAAGGTTCCAGCTCCAATCATACATCCCAGGGTATTAATTTTGGTATGGAGCACATTGCTAACTCATCTGATCGCGGGAAAGGTAAAGAAACTGGTATCGGTGTTAATAACAACGATCCTTTTGGATTAGATAGAGAGAAGACATCAATTGGCAGTTCTTCATTCAACCAAATAGGTGCTTCATCAGCAAGCTCTGGGTACATGGCTTGGGGAGATAGTGGCAGTTCAAGTTCTTCTTTAGCTAATTGGGGTCCTTCCTGCAAAAGAAAGACCCTTGAAGATAGTTCTATGCAACTGTGTACTGGAGGAAGCTCGAGTTCCCTTGTACAATCTGAAAATGGTTACTGGCTTACTGATTCTGTTGATCTTAATGTTCCTGGAAGCTTAGGTGATTTGTCACCTTTAGAGGATTTCCGTGTTACTAGCCCTCCATTTCAGCAGAATACAAGAAATGAAGCGAGACAAGAAGCTTCCAATGCATTTCCTTCAATGGTAAGTATTGCGGAAAATGTGGAAAGGCCTCTACGAAACTTTGATAGGAGAATGACCCATCTACATCATCCGGAATCTGTACCTCTCAATTTAACATCAACAGGGAGTGCTAGACATCATAATTACCCTTCTCCGCATCAAATACCCAGCTCTCTCTCATTTAACGAATCCTTGGATTTAAGGTTAGCAGCTGGAGCAGCTGGAGTAACAGCTGCTAATTCTGCTGTGACACAAAACCAGTCACCATCCCTGCACATGCATCCTTTTCCGTGGAATAGAGCTGCTAATCCTAGAGTGGCCAGATCTTCAAGTTCTTATAGCTCAGGAGAAAGAGCAGTACGTGATGATTTTAATTTAAGAATCTTCCCAAGAGATGGTACCGAGCATCCCATGAACATGCCTGCATCTTCAGGACATGAACCTGCAGGTTGGTATGCATCTTCTAGCAATGTGAACAATGCTGGAGGCATACCTCCTCCATCCTGGATCGGATCTAGTTCAAACGTCCACTCGTTGCCTAATCCCAGCTGGACATTTAACCATGAAGTCCCATCAGAAAATCTACAGAGAGTTTCAGAGTTCAGTCCCTGGTCCCTTTTTCCCTCAATCAGCTCAGCATCTAGTACTCATAATGGCCATTCCTCCTCTACTTCCGGCCCTCCTTCATTTTCTCAGGGTTCTAGCAGTAATCAACCACATCCAAGACCATCATTTATGACGGAGAGAAGGGGTGGTGATGTTCTCTCTGCTCCTCATTCATTGCGAACATTACCCTTTGACAATGAGGGGAGACGCCGGCTTATATCTGAGATTCGCCAAGTCCTGCTAGCAATGCGGAGGGGTGAGAACTTACGAGCTGAGGATTATATGCTCTTTGACCCGTTCCTATATCATGGCATGGCTGAAATGCACGACAGACACAGAGAAATGCGCCTTGATGTTGATAACATGTCTTACGAGGAATTGTTGGCATTGGAGGAGCGTATAGGAGACGTAAGCACTGGACTGAGTGAAGATATAATTAATAAGTTGATGAAACAGCGATTTTACATGTCTCTCATGACAGAGTCTTCTTCTGATCTCGAACCTTGCTGTATCTGTCAGGAGGAATATGTTGATGGACAGAATCTCGGTTTGCTGGATTGTGGGCACGAGTTCCACAGTAACTGCATCACACAGTGGCTAATGCAGAAGAATCTGTGCCCAATTTGCAAAACAACGGCCTTGGCCTCGTGA
Protein sequence

>Msa0611240

MQGQRRTIGSFPTIVNMMQGPSSNGTDMNHQSSLNHAQNAVDFRLSDYRGSSGETACLRGTGPNVSFNGWNTGEPSSGLNLVNQVNDDGLKSEQRLSSSCSAIAEDGLRPEERQLLGNQSRIHPSFLQGSSSNHTSQGINFGMEHIANSSDRGKGKETGIGVNNNDPFGLDREKTSIGSSSFNQIGASSASSGYMAWGDSGSSSSSLANWGPSCKRKTLEDSSMQLCTGGSSSSLVQSENGYWLTDSVDLNVPGSLGDLSPLEDFRVTSPPFQQNTRNEARQEASNAFPSMVSIAENVERPLRNFDRRMTHLHHPESVPLNLTSTGSARHHNYPSPHQIPSSLSFNESLDLRLAAGAAGVTAANSAVTQNQSPSLHMHPFPWNRAANPRVARSSSSYSSGERAVRDDFNLRIFPRDGTEHPMNMPASSGHEPAGWYASSSNVNNAGGIPPPSWIGSSSNVHSLPNPSWTFNHEVPSENLQRVSEFSPWSLFPSISSASSTHNGHSSSTSGPPSFSQGSSSNQPHPRPSFMTERRGGDVLSAPHSLRTLPFDNEGRRRLISEIRQVLLAMRRGENLRAEDYMLFDPFLYHGMAEMHDRHREMRLDVDNMSYEELLALEERIGDVSTGLSEDIINKLMKQRFYMSLMTESSSDLEPCCICQEEYVDGQNLGLLDCGHEFHSNCITQWLMQKNLCPICKTTALAS*