AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0694000

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0694000 MtrunA17_Chr4g0044601 98.006 702 11 1 1 702 1 699 0.0 1410
Msa0694000 MtrunA17_Chr1g0153211 32.664 747 419 21 1 702 1 708 5.02e-73 250
Msa0694000 MtrunA17_Chr1g0147951 45.455 165 77 3 542 696 308 469 1.69e-38 149
Msa0694000 MtrunA17_Chr3g0138951 44.643 168 79 4 543 699 368 532 5.98e-35 140
Msa0694000 MtrunA17_Chr7g0263911 44.872 156 77 4 551 700 484 636 8.53e-33 134
Msa0694000 MtrunA17_Chr2g0316601 45.185 135 61 3 575 701 388 517 2.88e-32 131
Msa0694000 MtrunA17_Chr1g0181401 49.573 117 55 2 586 701 417 530 7.89e-31 127
Msa0694000 MtrunA17_Chr2g0316591 50.943 106 49 1 596 701 197 299 1.61e-30 122
Msa0694000 MtrunA17_Chr2g0315711 42.982 114 57 1 596 701 217 330 3.01e-26 110
Msa0694000 MtrunA17_Chr6g0483631 48.598 107 54 1 596 701 252 358 1.67e-25 108
Msa0694000 MtrunA17_Chr5g0401961 39.597 149 88 2 553 700 449 596 4.73e-25 110
Msa0694000 MtrunA17_Chr8g0392341 45.299 117 63 1 586 701 236 352 1.03e-24 106
Msa0694000 MtrunA17_Chr3g0086891 36.806 144 81 1 557 700 312 445 2.14e-23 103
Msa0694000 MtrunA17_Chr4g0032561 40.404 99 59 0 603 701 144 242 4.99e-17 81.3
Msa0694000 MtrunA17_Chr3g0124751 42.222 90 50 1 606 695 139 226 1.85e-16 79.7
Msa0694000 MtrunA17_Chr8g0352131 35.354 99 64 0 603 701 144 242 4.59e-16 78.6
Msa0694000 MtrunA17_Chr2g0315681 39.583 96 50 1 588 675 81 176 1.17e-15 75.5
Msa0694000 MtrunA17_Chr1g0211831 41.000 100 57 1 603 702 238 335 9.82e-15 76.3
Msa0694000 MtrunA17_Chr1g0169651 35.238 105 61 2 594 698 629 726 1.44e-11 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0694000 AT4G34040.1 38.759 725 362 22 1 702 1 666 1.53e-105 336
Msa0694000 AT2G15530.5 36.302 741 392 23 1 702 4 703 7.86e-101 325
Msa0694000 AT2G15530.3 36.302 741 392 23 1 702 4 703 7.86e-101 325
Msa0694000 AT2G15530.2 36.302 741 392 23 1 702 4 703 7.86e-101 325
Msa0694000 AT2G15530.1 36.302 741 392 23 1 702 4 703 7.86e-101 325
Msa0694000 AT2G15530.7 36.302 741 392 23 1 702 4 703 7.86e-101 325
Msa0694000 AT2G15530.6 36.167 741 371 25 1 702 4 681 8.73e-98 316
Msa0694000 AT2G15530.4 35.607 733 396 21 1 696 4 697 4.84e-96 314
Msa0694000 AT5G42940.2 32.215 745 397 32 1 700 1 682 1.07e-62 222
Msa0694000 AT5G42940.1 32.215 745 397 32 1 700 1 682 1.07e-62 222
Msa0694000 AT1G45180.2 41.176 340 181 9 372 700 258 589 6.91e-57 204
Msa0694000 AT1G45180.1 41.176 340 181 9 372 700 306 637 1.12e-56 204
Msa0694000 AT1G45180.3 41.176 340 181 9 372 700 306 637 1.12e-56 204
Msa0694000 AT1G45180.4 41.176 340 181 9 372 700 306 637 1.12e-56 204
Msa0694000 AT5G24870.3 45.732 164 78 4 546 699 350 512 2.27e-37 147
Msa0694000 AT5G24870.1 45.732 164 78 4 546 699 350 512 2.27e-37 147
Msa0694000 AT5G24870.2 45.732 164 78 4 546 699 350 512 2.27e-37 147
Msa0694000 AT5G10650.1 47.297 148 67 4 562 699 373 519 1.94e-35 141
Msa0694000 AT5G10650.2 47.297 148 67 4 562 699 373 519 1.94e-35 141
Msa0694000 AT4G31450.1 47.059 153 72 2 559 702 343 495 2.10e-34 138
Msa0694000 AT4G31450.2 47.059 153 72 2 559 702 343 495 2.10e-34 138
Msa0694000 AT1G53190.2 50.000 114 49 2 596 701 375 488 1.34e-30 126
Msa0694000 AT1G53190.1 50.000 114 49 2 596 701 375 488 1.34e-30 126
Msa0694000 AT3G15070.1 48.182 110 53 2 596 701 365 474 2.24e-28 120
Msa0694000 AT3G15070.2 48.182 110 53 2 596 701 365 474 2.24e-28 120
Msa0694000 AT1G73760.1 43.902 123 67 1 577 699 243 363 2.62e-28 117
Msa0694000 AT2G37150.10 42.458 179 96 5 526 700 363 538 9.61e-27 115
Msa0694000 AT2G37150.11 42.458 179 96 5 526 700 363 538 9.61e-27 115
Msa0694000 AT2G37150.9 42.458 179 96 5 526 700 363 538 9.61e-27 115
Msa0694000 AT2G37150.12 42.458 179 96 5 526 700 363 538 9.61e-27 115
Msa0694000 AT2G37150.5 42.458 179 96 5 526 700 363 538 9.61e-27 115
Msa0694000 AT2G37150.4 42.458 179 96 5 526 700 363 538 9.61e-27 115
Msa0694000 AT2G37150.2 42.458 179 96 5 526 700 363 538 9.61e-27 115
Msa0694000 AT2G37150.8 42.458 179 96 5 526 700 363 538 9.61e-27 115
Msa0694000 AT2G37150.7 42.458 179 96 5 526 700 363 538 9.61e-27 115
Msa0694000 AT2G37150.6 42.458 179 96 5 526 700 363 538 9.61e-27 115
Msa0694000 AT2G37150.1 42.458 179 96 5 526 700 363 538 9.61e-27 115
Msa0694000 AT2G37150.14 42.458 179 96 5 526 700 379 554 1.44e-26 115
Msa0694000 AT2G37150.13 42.458 179 96 5 526 700 379 554 1.44e-26 115
Msa0694000 AT2G37150.15 42.458 179 96 5 526 700 379 554 1.44e-26 115
Msa0694000 AT2G37150.3 42.458 179 96 5 526 700 416 591 3.53e-26 114
Msa0694000 AT1G17970.1 42.276 123 68 2 577 699 245 364 7.23e-24 104
Msa0694000 AT5G67120.1 41.111 90 50 1 606 695 181 267 3.24e-17 82.8
Msa0694000 AT5G10650.3 42.593 108 51 4 562 659 373 479 5.20e-16 82.0
Msa0694000 AT3G19910.1 41.489 94 53 1 602 695 237 328 7.20e-16 80.1
Msa0694000 AT3G63530.2 35.714 98 63 0 603 700 145 242 1.30e-15 77.8
Msa0694000 AT3G63530.1 35.714 98 63 0 603 700 145 242 1.30e-15 77.8
Msa0694000 AT5G52140.1 36.634 101 56 1 604 696 175 275 2.62e-15 77.4
Msa0694000 AT1G36950.1 33.654 104 66 2 596 699 24 124 2.49e-14 73.6
Msa0694000 AT3G47180.1 37.363 91 54 2 606 695 115 203 6.81e-13 68.9
Msa0694000 AT4G00070.1 34.043 94 59 2 596 689 88 178 1.37e-12 67.0

Find 221 sgRNAs with CRISPR-Local

Find 402 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAACGAATCCTTGGATTTA+AGG 0.097825 4_4:+63242335 Msa0694000:CDS
CAAGTTCTTCTTTAGCTAAT+TGG 0.143461 4_4:+63241909 Msa0694000:CDS
ACATCCCAGGGTATTAATTT+TGG 0.158723 4_4:+63241704 Msa0694000:CDS
CGCAAAATGCAGTAGATTTC+CGG 0.221239 4_4:+63241411 Msa0694000:CDS
CTGAGCTGATTGAGGGAAAA+AGG 0.221504 4_4:-63242768 None:intergenic
AAGTTCTTCTTTAGCTAATT+GGG 0.226927 4_4:+63241910 Msa0694000:CDS
AAAAGAGAGAGAGTAATTAA+AGG 0.247672 4_4:-63239240 None:intergenic
GGTCCTAATGTGAGCTTTAA+TGG 0.250304 4_4:+63241485 Msa0694000:CDS
GTTAATAACAACGATCCTTT+TGG 0.270646 4_4:+63241785 Msa0694000:CDS
TCCCTTGTACAATCTGAAAA+TGG 0.272688 4_4:+63242001 Msa0694000:CDS
AGGTGATTTGTCACCTTTAG+AGG 0.276118 4_4:+63242069 Msa0694000:CDS
TTTCCGGCTGTCAGATTATA+GGG 0.281834 4_4:+63241427 Msa0694000:CDS
TACAATCTGAAAATGGTTAC+TGG 0.301098 4_4:+63242008 Msa0694000:CDS
TTACATTTATACTGTGATAA+TGG 0.309211 4_4:+63244552 Msa0694000:three_prime_UTR
TCACCCACCCATTTCAATTC+AGG 0.328214 4_4:+63239420 Msa0694000:five_prime_UTR
CCTCTCAATTTAACATCAAC+AGG 0.330426 4_4:+63242256 Msa0694000:CDS
TTTCTTGTATTCTGCTGAAA+TGG 0.334803 4_4:-63242112 None:intergenic
ATTTCCGGCTGTCAGATTAT+AGG 0.345014 4_4:+63241426 Msa0694000:CDS
AAAGAGATCCTGAATTGAAA+TGG 0.348292 4_4:-63239428 None:intergenic
TGGACAGAATCTCGGTTTGC+TGG 0.349741 4_4:+63244256 Msa0694000:CDS
TCTGTTGATCTTAATGTTCC+TGG 0.349757 4_4:+63242040 Msa0694000:CDS
AACTTCCTCTCATCTTAGAT+TGG 0.351737 4_4:+63244464 Msa0694000:three_prime_UTR
GACCAGATTCAGTCCAGAAC+TGG 0.352502 4_4:-63241525 None:intergenic
AAATTGAGAGGTACAGATTC+CGG 0.354926 4_4:-63242244 None:intergenic
AAGCTCTGGGTACATGGCTT+GGG 0.358208 4_4:+63241871 Msa0694000:CDS
TTGCTGATGAAGCACCTATT+TGG 0.361321 4_4:-63241850 None:intergenic
TGCATCATGTTAACAATTGT+TGG 0.362768 4_4:-63241335 None:intergenic
GGCCATTCCTCCTCTACTTC+CGG 0.363757 4_4:+63242808 Msa0694000:CDS
CCCAAGTAATTGCCTTTCCT+CGG 0.375762 4_4:-63241630 None:intergenic
TTCCAATGCATTTCCTTCAA+TGG 0.376501 4_4:+63242153 Msa0694000:CDS
CAGATTCCGGATGATGTAGA+TGG 0.380959 4_4:-63242231 None:intergenic
AGTTCTTCATTCAACCAAAT+AGG 0.383336 4_4:+63241836 Msa0694000:CDS
CAAGGTCAAAGGAGGACTAT+TGG 0.384610 4_4:+63241305 Msa0694000:CDS
ATCTCGGTTTGCTGGATTGT+GGG 0.387032 4_4:+63244264 Msa0694000:CDS
ACCCAGTTCTGGACTGAATC+TGG 0.388706 4_4:+63241523 Msa0694000:CDS
GAAAAGATATGCTTATGCTT+TGG 0.389315 4_4:-63239151 None:intergenic
AGGTTAGCAGCTGGAGCAGC+TGG 0.389981 4_4:+63242355 Msa0694000:CDS
TCCGCAATACTTACCATTGA+AGG 0.391370 4_4:-63242166 None:intergenic
CGCGGGAAAGGTAAAGAAAC+TGG 0.399821 4_4:+63241755 Msa0694000:CDS
CCCTCAATCAGCTCAGCATC+TGG 0.403565 4_4:+63242775 Msa0694000:CDS
AATACCGGTGAACCCAGTTC+TGG 0.405795 4_4:+63241512 Msa0694000:CDS
TCCGCATTGCTAGCAGGACT+TGG 0.414252 4_4:-63243333 None:intergenic
TTTCAGCCATGCCATGATAT+AGG 0.415855 4_4:-63243847 None:intergenic
ATGAACATGCCTGCATCTTC+AGG 0.416304 4_4:+63242565 Msa0694000:CDS
CTTAATGTTCCTGGAAGCTT+AGG 0.416639 4_4:+63242049 Msa0694000:CDS
GGAGCTGGAACCTTGCAAAA+AGG 0.419168 4_4:-63241675 None:intergenic
AATTTGCAAAACAACGGCCT+TGG 0.421383 4_4:+63244343 Msa0694000:CDS
AAGGTCAAAGGAGGACTATT+GGG 0.421479 4_4:+63241306 Msa0694000:CDS
TCAGCATCTGGTACTCATAA+TGG 0.422284 4_4:+63242787 Msa0694000:CDS
ACTTGGATTACAGGAATTGT+TGG 0.422489 4_4:+63243988 Msa0694000:intron
GACAAATCACCTAAGCTTCC+AGG 0.422851 4_4:-63242058 None:intergenic
GCTATAAGAACTTGAAGATC+TGG 0.424200 4_4:-63242473 None:intergenic
TCTCTCATTTAACGAATCCT+TGG 0.425147 4_4:+63242327 Msa0694000:CDS
TTAAATGTCCAGCTGGGATT+AGG 0.425206 4_4:-63242691 None:intergenic
CAGCCATTAAAGCTCACATT+AGG 0.430620 4_4:-63241488 None:intergenic
GGATGCTCGGTACCATCTCT+TGG 0.437725 4_4:-63242541 None:intergenic
TCTTCAAGTTCTTATAGCTC+AGG 0.441108 4_4:+63242478 Msa0694000:CDS
CCCGAGGAAAGGCAATTACT+TGG 0.442769 4_4:+63241629 Msa0694000:CDS
GATAGAGAGAAGACATCAAT+TGG 0.443897 4_4:+63241812 Msa0694000:CDS
GGTGCTTCATCAGCAAGCTC+TGG 0.446881 4_4:+63241857 Msa0694000:CDS
GCATCATGTTAACAATTGTT+GGG 0.448389 4_4:-63241334 None:intergenic
ACAGGAATTGTTGGCATTGG+AGG 0.449223 4_4:+63243997 Msa0694000:intron
AGTTCTATGCAACTGTGTAC+TGG 0.450835 4_4:+63241965 Msa0694000:CDS
CAAGCTCTGGGTACATGGCT+TGG 0.453447 4_4:+63241870 Msa0694000:CDS
ATCAGCAAGCTCTGGGTACA+TGG 0.454476 4_4:+63241865 Msa0694000:CDS
TCCGTCATAAATGATGGTCT+TGG 0.456568 4_4:-63242874 None:intergenic
AATACCCTGGGATGTATGAT+TGG 0.457792 4_4:-63241696 None:intergenic
TGAAGATGCAGGCATGTTCA+TGG 0.458693 4_4:-63242563 None:intergenic
ACGGAAAAGGATGCATGTGC+AGG 0.463084 4_4:-63242423 None:intergenic
GAGGCATACCTCCTCCATCC+TGG 0.464929 4_4:+63242638 Msa0694000:CDS
TTGGCATTGGAGGAGCGTAT+AGG 0.467631 4_4:+63244007 Msa0694000:CDS
CTGGGTATTTGATGCGGAGA+AGG 0.469401 4_4:-63242301 None:intergenic
GTTGCATAGAACTATCTTCA+AGG 0.469481 4_4:-63241955 None:intergenic
ATTACAGGAATTGTTGGCAT+TGG 0.469952 4_4:+63243994 Msa0694000:intron
TACCATTGAAGGAAATGCAT+TGG 0.475872 4_4:-63242155 None:intergenic
TACATGGCTTGGGGAGATAG+TGG 0.476826 4_4:+63241881 Msa0694000:CDS
CACCCCTCCGCATTGCTAGC+AGG 0.478449 4_4:-63243339 None:intergenic
ACTTCCTCTCATCTTAGATT+GGG 0.478741 4_4:+63244465 Msa0694000:three_prime_UTR
TTCATGGTTAAATGTCCAGC+TGG 0.479375 4_4:-63242698 None:intergenic
GCAGCTCTATTCCACGGAAA+AGG 0.483068 4_4:-63242436 None:intergenic
TTCTCTCTATCTAATCCAAA+AGG 0.484392 4_4:-63241800 None:intergenic
GAGAGAGAGTAATTAAAGGA+AGG 0.487700 4_4:-63239236 None:intergenic
CTTGAAGATCTGGCCACTCT+AGG 0.488392 4_4:-63242463 None:intergenic
AGGAAGGATGAATTCTGGAT+TGG 0.489393 4_4:-63241655 None:intergenic
TCTAGCAATGTGAACAATGC+TGG 0.492365 4_4:+63242616 Msa0694000:CDS
TTTGACCCGTTCCTATATCA+TGG 0.495379 4_4:+63243836 Msa0694000:CDS
GCATGTGCAGGGATGGTGAC+TGG 0.496504 4_4:-63242411 None:intergenic
CCAGATGCTGAGCTGATTGA+GGG 0.499253 4_4:-63242775 None:intergenic
AATCTCGGTTTGCTGGATTG+TGG 0.503034 4_4:+63244263 Msa0694000:CDS
ACCAGATGCTGAGCTGATTG+AGG 0.503694 4_4:-63242776 None:intergenic
AATGACCCATCTACATCATC+CGG 0.504390 4_4:+63242225 Msa0694000:CDS
CCATGCCATGATATAGGAAC+GGG 0.504505 4_4:-63243841 None:intergenic
AGCTTTAATGGCTGGAATAC+CGG 0.504903 4_4:+63241497 Msa0694000:CDS
CCAAGTAATTGCCTTTCCTC+GGG 0.505140 4_4:-63241629 None:intergenic
GCGTCTCCCCTCATTGTCAA+AGG 0.505562 4_4:-63242947 None:intergenic
CTAATGTGAGCTTTAATGGC+TGG 0.506591 4_4:+63241489 Msa0694000:CDS
AGTTCTTCTTTAGCTAATTG+GGG 0.509140 4_4:+63241911 Msa0694000:CDS
CGAACCTTGCTGTATCTGTC+AGG 0.510627 4_4:+63244123 Msa0694000:CDS
TTGGATTTAAGGTTAGCAGC+TGG 0.512421 4_4:+63242346 Msa0694000:CDS
ATATCAGTGCCGTTAGAACT+AGG 0.513259 4_4:-63241362 None:intergenic
ATCATTTATGACGGAGAGAA+GGG 0.513405 4_4:+63242882 Msa0694000:CDS
TCGTAGGAGGAATATGTTGA+TGG 0.514134 4_4:+63244236 Msa0694000:intron
GCTTTGGTTCGTGTATCAAA+CGG 0.514554 4_4:-63239135 None:intergenic
TTCGTTAAATGAGAGAGAGC+TGG 0.514820 4_4:-63242320 None:intergenic
TTAGACCATCATCGTTGACT+TGG 0.518707 4_4:-63241550 None:intergenic
GGCCTCTACGAAACTTTGAT+AGG 0.519192 4_4:+63242200 Msa0694000:CDS
TCCTTCAATGGTAAGTATTG+CGG 0.521830 4_4:+63242165 Msa0694000:CDS
AAGAGATCCTGAATTGAAAT+GGG 0.522041 4_4:-63239427 None:intergenic
CTTGTATTCTGCTGAAATGG+AGG 0.528159 4_4:-63242109 None:intergenic
TGAAGGAGGGCCGGAAGTAG+AGG 0.529847 4_4:-63242818 None:intergenic
GATGCTCGGTACCATCTCTT+GGG 0.530647 4_4:-63242540 None:intergenic
GAGTTTCAGAGTTCAGTCCC+TGG 0.531646 4_4:+63242743 Msa0694000:CDS
CAGCTCCAATCATACATCCC+AGG 0.532081 4_4:+63241691 Msa0694000:CDS
TTCTCCTCGTCACGAGGCCA+AGG 0.532429 4_4:-63244360 None:intergenic
TATGTTGATGGACAGAATCT+CGG 0.533020 4_4:+63244248 Msa0694000:CDS
CTGGGATGTATGATTGGAGC+TGG 0.533285 4_4:-63241690 None:intergenic
CCATACCAAAATTAATACCC+TGG 0.533313 4_4:-63241709 None:intergenic
GTCAACCAAGTCAACGATGA+TGG 0.533785 4_4:+63241545 Msa0694000:CDS
CATCATTTATGACGGAGAGA+AGG 0.535519 4_4:+63242881 Msa0694000:CDS
CAGTCCAGAACTGGGTTCAC+CGG 0.537341 4_4:-63241516 None:intergenic
AACTCATCTGATCGCGGGAA+AGG 0.537842 4_4:+63241743 Msa0694000:CDS
TTGTATTCTGCTGAAATGGA+GGG 0.540043 4_4:-63242108 None:intergenic
GTGCTTCATCAGCAAGCTCT+GGG 0.541448 4_4:+63241858 Msa0694000:CDS
CTTCTCTCCGTCATAAATGA+TGG 0.542772 4_4:-63242880 None:intergenic
ACTGCGTGTTTACGTGGTAC+TGG 0.544695 4_4:+63241464 Msa0694000:CDS
GGTAAGTATTGCGGAAAATG+TGG 0.545122 4_4:+63242174 Msa0694000:CDS
ACTCGTTGCCTAATCCCAGC+TGG 0.546716 4_4:+63242683 Msa0694000:CDS
AGAATACCTCAGATATAAGC+CGG 0.546777 4_4:-63242969 None:intergenic
CATGTTAACAATTGTTGGGA+AGG 0.548563 4_4:-63241330 None:intergenic
GGCCGGAAGTAGAGGAGGAA+TGG 0.548685 4_4:-63242810 None:intergenic
TGCAGTGCTATTGCTGAGGA+TGG 0.548890 4_4:+63241599 Msa0694000:CDS
GTAACACGGAAATCCTCTAA+AGG 0.548952 4_4:-63242082 None:intergenic
AACATTACCCTTTGACAATG+AGG 0.550770 4_4:+63242939 Msa0694000:CDS
CCTGTTGATGTTAAATTGAG+AGG 0.551479 4_4:-63242256 None:intergenic
TTAAGAATCTTCCCAAGAGA+TGG 0.552146 4_4:+63242529 Msa0694000:CDS
CGTCTCCCCTCATTGTCAAA+GGG 0.557688 4_4:-63242946 None:intergenic
GAAGATGCATACCAACCTGC+AGG 0.560217 4_4:-63242595 None:intergenic
ATAAATGATGGTCTTGGATG+TGG 0.560899 4_4:-63242868 None:intergenic
ATGGATATGATATGTGAGGA+GGG 0.561327 4_4:-63244388 None:intergenic
ACCAGATTCAGTCCAGAACT+GGG 0.561939 4_4:-63241524 None:intergenic
CGTTCCCAATCTAAGATGAG+AGG 0.563654 4_4:-63244469 None:intergenic
CCCGTTCCTATATCATGGCA+TGG 0.564089 4_4:+63243841 Msa0694000:CDS
CTGAGAAAATGAAGGAGGGC+CGG 0.564669 4_4:-63242827 None:intergenic
AGCTGCTAACCTTAAATCCA+AGG 0.566796 4_4:-63242344 None:intergenic
ACAATTGTTAACATGATGCA+AGG 0.567765 4_4:+63241338 Msa0694000:CDS
AATGGATATGATATGTGAGG+AGG 0.569417 4_4:-63244389 None:intergenic
ACATTACCCTTTGACAATGA+GGG 0.569813 4_4:+63242940 Msa0694000:CDS
TCGTTAAATGAGAGAGAGCT+GGG 0.570407 4_4:-63242319 None:intergenic
GGTAATGTTCGCAATGAATG+AGG 0.571479 4_4:-63242925 None:intergenic
TTGGTGGTTAAGCTATATAG+TGG 0.573596 4_4:+63244527 Msa0694000:three_prime_UTR
CTAGAACCCTGAGAAAATGA+AGG 0.574039 4_4:-63242835 None:intergenic
TTGACAATGAGGGGAGACGC+CGG 0.574448 4_4:+63242950 Msa0694000:CDS
CATACCAAAATTAATACCCT+GGG 0.579560 4_4:-63241708 None:intergenic
GGTTCATGTCCTGAAGATGC+AGG 0.579750 4_4:-63242574 None:intergenic
AGGCATGTTCATGGGATGCT+CGG 0.582337 4_4:-63242554 None:intergenic
TTGCTAACTCATCTGATCGC+GGG 0.582591 4_4:+63241738 Msa0694000:CDS
TTCATGCAGTGCTATTGCTG+AGG 0.583880 4_4:+63241595 Msa0694000:CDS
AGCTCCAATCATACATCCCA+GGG 0.583928 4_4:+63241692 Msa0694000:CDS
GATCCGATCCAGGATGGAGG+AGG 0.587181 4_4:-63242646 None:intergenic
TCTTCAGGACATGAACCTGC+AGG 0.587539 4_4:+63242580 Msa0694000:CDS
GGATTAGCAGCTCTATTCCA+CGG 0.587662 4_4:-63242442 None:intergenic
AAGACATGTTATCAACATCA+AGG 0.587950 4_4:-63243895 None:intergenic
CGTATAGGAGACGTAAGCAC+TGG 0.589103 4_4:+63244022 Msa0694000:CDS
CGGAAAAGGATGCATGTGCA+GGG 0.589482 4_4:-63242422 None:intergenic
AAGTCCTGCTAGCAATGCGG+AGG 0.591095 4_4:+63243335 Msa0694000:CDS
TGGGTATTTGATGCGGAGAA+GGG 0.592151 4_4:-63242300 None:intergenic
ACGGCCTTGGCCTCGTGACG+AGG 0.592438 4_4:+63244356 Msa0694000:exon
ATACCTCCTCCATCCTGGAT+CGG 0.597148 4_4:+63242643 Msa0694000:CDS
ATGCAAGGGCCTAGTTCTAA+CGG 0.598756 4_4:+63241353 Msa0694000:CDS
AGTCCTGCTAGCAATGCGGA+GGG 0.600021 4_4:+63243336 Msa0694000:CDS
AGGAGGGCCGGAAGTAGAGG+AGG 0.600626 4_4:-63242815 None:intergenic
GCCATGCCATGATATAGGAA+CGG 0.601493 4_4:-63243842 None:intergenic
GTTTGAACTAGATCCGATCC+AGG 0.602400 4_4:-63242656 None:intergenic
TTGCATAGAACTATCTTCAA+GGG 0.607661 4_4:-63241954 None:intergenic
AGCTCTGGGTACATGGCTTG+GGG 0.608752 4_4:+63241872 Msa0694000:CDS
GAAGATGCAGGCATGTTCAT+GGG 0.612414 4_4:-63242562 None:intergenic
AGCTGGGATTAGGCAACGAG+TGG 0.614305 4_4:-63242681 None:intergenic
ATGGTCTAAAATCTGAACAA+AGG 0.615474 4_4:+63241564 Msa0694000:CDS
TCATGGTTAAATGTCCAGCT+GGG 0.617200 4_4:-63242697 None:intergenic
CCGAGGAAAGGCAATTACTT+GGG 0.617285 4_4:+63241630 Msa0694000:CDS
TCCGGCTGTCAGATTATAGG+GGG 0.617959 4_4:+63241429 Msa0694000:CDS
AGATTCCGGATGATGTAGAT+GGG 0.618088 4_4:-63242230 None:intergenic
ATGGTCTAAGACCCGAGGAA+AGG 0.618806 4_4:+63241618 Msa0694000:CDS
CATTACCCTTTGACAATGAG+GGG 0.621079 4_4:+63242941 Msa0694000:CDS
TTCCGGCTGTCAGATTATAG+GGG 0.622484 4_4:+63241428 Msa0694000:CDS
TCCAAGACCATCATTTATGA+CGG 0.623304 4_4:+63242873 Msa0694000:CDS
GAACTAGATCCGATCCAGGA+TGG 0.623562 4_4:-63242652 None:intergenic
AAAGGATGCATGTGCAGGGA+TGG 0.625312 4_4:-63242418 None:intergenic
GAAATGGAGGGCTAGTAACA+CGG 0.626528 4_4:-63242096 None:intergenic
AACCCTGAGAAAATGAAGGA+GGG 0.627593 4_4:-63242831 None:intergenic
GAACCCTGAGAAAATGAAGG+AGG 0.629118 4_4:-63242832 None:intergenic
GGTGAGACTGCGTGTTTACG+TGG 0.629689 4_4:+63241458 Msa0694000:CDS
CAATTGTTAACATGATGCAA+GGG 0.631076 4_4:+63241339 Msa0694000:CDS
GAGACGCCGGCTTATATCTG+AGG 0.637714 4_4:+63242963 Msa0694000:CDS
CAGGACATGAACCTGCAGGT+TGG 0.639313 4_4:+63242584 Msa0694000:CDS
TAGAGCTGCTAATCCTAGAG+TGG 0.639565 4_4:+63242450 Msa0694000:CDS
CTAGATCCGATCCAGGATGG+AGG 0.640498 4_4:-63242649 None:intergenic
AGAGAGCTGGGTATTTGATG+CGG 0.644067 4_4:-63242307 None:intergenic
CTCCTATCAAAGTTTCGTAG+AGG 0.644531 4_4:-63242202 None:intergenic
GTGCCCAATTTGCAAAACAA+CGG 0.647258 4_4:+63244337 Msa0694000:CDS
ATTGCTAACTCATCTGATCG+CGG 0.649060 4_4:+63241737 Msa0694000:CDS
GGGTGAGAACTTACGAGCTG+AGG 0.649232 4_4:+63243357 Msa0694000:CDS
GAGAGATTCTCCTCGTCACG+AGG 0.654973 4_4:-63244366 None:intergenic
GTCCTGCTAGCAATGCGGAG+GGG 0.658388 4_4:+63243337 Msa0694000:CDS
TCATTTATGACGGAGAGAAG+GGG 0.659104 4_4:+63242883 Msa0694000:CDS
TCTATGCAACTGTGTACTGG+AGG 0.660737 4_4:+63241968 Msa0694000:CDS
GATCCTGAATTGAAATGGGT+GGG 0.664031 4_4:-63239423 None:intergenic
AGATCCTGAATTGAAATGGG+TGG 0.665505 4_4:-63239424 None:intergenic
GTATTGCGGAAAATGTGGAA+AGG 0.668186 4_4:+63242179 Msa0694000:CDS
CATACCTGACAGATACAGCA+AGG 0.680407 4_4:-63244127 None:intergenic
TTTATGACGGAGAGAAGGGG+TGG 0.681408 4_4:+63242886 Msa0694000:CDS
CTCTCAATTTAACATCAACA+GGG 0.682031 4_4:+63242257 Msa0694000:CDS
ATGGGTGGGTGAGAGTTCTG+AGG 0.683665 4_4:-63239409 None:intergenic
AGCAATGTGAACAATGCTGG+AGG 0.684313 4_4:+63242619 Msa0694000:CDS
AAAGGTAAAGAAACTGGTAA+CGG 0.684761 4_4:+63241761 Msa0694000:CDS
TGTTGATAACATGTCTTACG+AGG 0.689280 4_4:+63243901 Msa0694000:CDS
TGAGGATGGTCTAAGACCCG+AGG 0.700114 4_4:+63241613 Msa0694000:CDS
GCCAAGTCCTGCTAGCAATG+CGG 0.702352 4_4:+63243332 Msa0694000:CDS
ATAAATGGATATGATATGTG+AGG 0.706368 4_4:-63244392 None:intergenic
ACTGTGTGATGCAGTTACTG+TGG 0.719811 4_4:-63244295 None:intergenic
ACAGTAACTGCATCACACAG+TGG 0.758156 4_4:+63244297 Msa0694000:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTACAAAAGTT+CGG + chr4_4:63239539-63239558 Msa0694000:intron 10.0%
!! TATATATATTTCAAACAAAA+GGG - chr4_4:63239732-63239751 None:intergenic 10.0%
!!! TCTCTAAAAAATCTTAAATT+AGG + chr4_4:63239180-63239199 Msa0694000:five_prime_UTR 15.0%
!! GTATATATATTTCAAACAAA+AGG - chr4_4:63239733-63239752 None:intergenic 15.0%
!!! TTTTTATTTTTGTTTGGATT+TGG + chr4_4:63239812-63239831 Msa0694000:intron 15.0%
!! AAAAATGTAATCAATAATTC+TGG + chr4_4:63243633-63243652 Msa0694000:intron 15.0%
!! TGAACTAAATAACTAATATA+CGG - chr4_4:63243700-63243719 None:intergenic 15.0%
!! AAAAGATAAAAACTGATAAA+TGG - chr4_4:63244410-63244429 None:intergenic 15.0%
!! TAGACATAAAAAAGAAATAT+TGG + chr4_4:63244508-63244527 Msa0694000:three_prime_UTR 15.0%
!! AATTGTGCATGAAATATAAT+GGG - chr4_4:63239673-63239692 None:intergenic 20.0%
!! AAATTGTGCATGAAATATAA+TGG - chr4_4:63239674-63239693 None:intergenic 20.0%
!!! TTTGGTTTATTATACTTTCA+AGG + chr4_4:63239830-63239849 Msa0694000:intron 20.0%
!! AAGAAGAATGTAATTCATTT+AGG - chr4_4:63240540-63240559 None:intergenic 20.0%
!!! AAATGTGCATATTATTTTCT+TGG - chr4_4:63240945-63240964 None:intergenic 20.0%
!! AAAAAAAAAAAAGAGCTAGA+TGG - chr4_4:63241068-63241087 None:intergenic 20.0%
!!! TTTTTTTTGCATCTATCAAA+TGG + chr4_4:63241096-63241115 Msa0694000:intron 20.0%
!! ACATAAAAAAGAAATATTGG+TGG + chr4_4:63244511-63244530 Msa0694000:three_prime_UTR 20.0%
!! TTACATTTATACTGTGATAA+TGG + chr4_4:63244552-63244571 Msa0694000:three_prime_UTR 20.0%
! AAAAGAGAGAGAGTAATTAA+AGG - chr4_4:63239243-63239262 None:intergenic 25.0%
!!! TACAAAAGTTCGGTTTTTTT+AGG + chr4_4:63239549-63239568 Msa0694000:intron 25.0%
! ATATTTCAAACAAAAGGGTA+GGG - chr4_4:63239727-63239746 None:intergenic 25.0%
! TATATTTCAAACAAAAGGGT+AGG - chr4_4:63239728-63239747 None:intergenic 25.0%
! GTTTATTATACTTTCAAGGA+AGG + chr4_4:63239834-63239853 Msa0694000:intron 25.0%
! AAGGTTAGGAATTGTTTATT+GGG + chr4_4:63239853-63239872 Msa0694000:intron 25.0%
!! ATGTTGTGCTTATGTATTTT+AGG + chr4_4:63239950-63239969 Msa0694000:intron 25.0%
!! TTATTAGTCATTTAGCTTCT+TGG + chr4_4:63240178-63240197 Msa0694000:intron 25.0%
! TGAAATTGGTTAAAATGCAT+TGG - chr4_4:63240211-63240230 None:intergenic 25.0%
! AAGAATGTAATTCATTTAGG+AGG - chr4_4:63240537-63240556 None:intergenic 25.0%
!! ATTACATTCTTCTTTTGCTT+TGG + chr4_4:63240546-63240565 Msa0694000:intron 25.0%
!! TTTATTTCTTCTCATTTCTC+TGG + chr4_4:63240861-63240880 Msa0694000:intron 25.0%
!! TGTTTTCTGCTCATTAATTT+AGG + chr4_4:63241261-63241280 Msa0694000:intron 25.0%
! AAGTTCTTCTTTAGCTAATT+GGG + chr4_4:63241910-63241929 Msa0694000:CDS 25.0%
!!! TGCTTATTTTTAGCTAAATG+TGG + chr4_4:63243265-63243284 Msa0694000:intron 25.0%
! CATCAAGTGTAATAAAATGA+TGG - chr4_4:63243464-63243483 None:intergenic 25.0%
! AAAATGCTTATAGTAGAATC+AGG + chr4_4:63243549-63243568 Msa0694000:intron 25.0%
! AACATATCTTTGTATCATAC+TGG - chr4_4:63244170-63244189 None:intergenic 25.0%
! GTATGATACAAAGATATGTT+TGG + chr4_4:63244170-63244189 Msa0694000:intron 25.0%
! ATAAATGGATATGATATGTG+AGG - chr4_4:63244395-63244414 None:intergenic 25.0%
!! AGTGCTTTTAGATATCATAA+AGG - chr4_4:63244590-63244609 None:intergenic 25.0%
GAAAAGATATGCTTATGCTT+TGG - chr4_4:63239154-63239173 None:intergenic 30.0%
!!! TATTGCCTTTTTTTCTCACT+CGG + chr4_4:63239266-63239285 Msa0694000:five_prime_UTR 30.0%
TATTACCGAGTGAGAAAAAA+AGG - chr4_4:63239274-63239293 None:intergenic 30.0%
AAGAGATCCTGAATTGAAAT+GGG - chr4_4:63239430-63239449 None:intergenic 30.0%
AAAGAGATCCTGAATTGAAA+TGG - chr4_4:63239431-63239450 None:intergenic 30.0%
GAAGAAAAAATCATTACCAG+AGG - chr4_4:63239455-63239474 None:intergenic 30.0%
!!! AAAAGTTCGGTTTTTTTAGG+AGG + chr4_4:63239552-63239571 Msa0694000:intron 30.0%
!! AGTTCTTGCATCGTTTTTAT+CGG + chr4_4:63239623-63239642 Msa0694000:intron 30.0%
TTATACTTTCAAGGAAGGTT+AGG + chr4_4:63239839-63239858 Msa0694000:intron 30.0%
GAAGGTTAGGAATTGTTTAT+TGG + chr4_4:63239852-63239871 Msa0694000:intron 30.0%
ACATAAGCACAACATTAATC+AGG - chr4_4:63239945-63239964 None:intergenic 30.0%
! GCATATTTAGTTTCTCTCTT+TGG + chr4_4:63239975-63239994 Msa0694000:intron 30.0%
!! TAGAGATTTTGATGTTCGTA+AGG + chr4_4:63240022-63240041 Msa0694000:intron 30.0%
CAATTATCTTGTGCTGAAAT+TGG - chr4_4:63240225-63240244 None:intergenic 30.0%
CAATTTCAGCACAAGATAAT+TGG + chr4_4:63240223-63240242 Msa0694000:intron 30.0%
!! GTTGAGTTTTATGAACTAGT+TGG + chr4_4:63240245-63240264 Msa0694000:intron 30.0%
TTTCTTTCTTTCTCTCTGTT+TGG + chr4_4:63240301-63240320 Msa0694000:intron 30.0%
!! CTTGGTGTGACATTTATTTT+CGG + chr4_4:63240450-63240469 Msa0694000:intron 30.0%
ACACTAAGTTAAATACGATG+TGG - chr4_4:63240604-63240623 None:intergenic 30.0%
TAAATTCATTTGCCAGCTAT+TGG - chr4_4:63240636-63240655 None:intergenic 30.0%
! CTGGCAAATGAATTTAAAGT+TGG + chr4_4:63240640-63240659 Msa0694000:intron 30.0%
! AAGTTAGTTTCCTCTTATCT+TGG + chr4_4:63240677-63240696 Msa0694000:intron 30.0%
AAAACTAGACATGCAAAAGT+GGG + chr4_4:63240703-63240722 Msa0694000:intron 30.0%
! ATTCATGTGTTACTACTTAC+TGG + chr4_4:63240971-63240990 Msa0694000:intron 30.0%
TTTCTGCTCATTAATTTAGG+TGG + chr4_4:63241264-63241283 Msa0694000:intron 30.0%
TTCTGCTCATTAATTTAGGT+GGG + chr4_4:63241265-63241284 Msa0694000:intron 30.0%
GCATCATGTTAACAATTGTT+GGG - chr4_4:63241337-63241356 None:intergenic 30.0%
TGCATCATGTTAACAATTGT+TGG - chr4_4:63241338-63241357 None:intergenic 30.0%
ACAATTGTTAACATGATGCA+AGG + chr4_4:63241338-63241357 Msa0694000:CDS 30.0%
CAATTGTTAACATGATGCAA+GGG + chr4_4:63241339-63241358 Msa0694000:CDS 30.0%
! ATGGTCTAAAATCTGAACAA+AGG + chr4_4:63241564-63241583 Msa0694000:CDS 30.0%
CATACCAAAATTAATACCCT+GGG - chr4_4:63241711-63241730 None:intergenic 30.0%
AAAGGTAAAGAAACTGGTAA+CGG + chr4_4:63241761-63241780 Msa0694000:CDS 30.0%
! GTTAATAACAACGATCCTTT+TGG + chr4_4:63241785-63241804 Msa0694000:CDS 30.0%
TTCTCTCTATCTAATCCAAA+AGG - chr4_4:63241803-63241822 None:intergenic 30.0%
AGTTCTTCATTCAACCAAAT+AGG + chr4_4:63241836-63241855 Msa0694000:CDS 30.0%
CAAGTTCTTCTTTAGCTAAT+TGG + chr4_4:63241909-63241928 Msa0694000:CDS 30.0%
AGTTCTTCTTTAGCTAATTG+GGG + chr4_4:63241911-63241930 Msa0694000:CDS 30.0%
TTGCATAGAACTATCTTCAA+GGG - chr4_4:63241957-63241976 None:intergenic 30.0%
! ACCATTTTCAGATTGTACAA+GGG - chr4_4:63242005-63242024 None:intergenic 30.0%
! AACCATTTTCAGATTGTACA+AGG - chr4_4:63242006-63242025 None:intergenic 30.0%
TACAATCTGAAAATGGTTAC+TGG + chr4_4:63242008-63242027 Msa0694000:CDS 30.0%
TTTCTTGTATTCTGCTGAAA+TGG - chr4_4:63242115-63242134 None:intergenic 30.0%
CTCTCAATTTAACATCAACA+GGG + chr4_4:63242257-63242276 Msa0694000:CDS 30.0%
TTAACGAATCCTTGGATTTA+AGG + chr4_4:63242335-63242354 Msa0694000:CDS 30.0%
CTAAATATATCAGTATAGCC+TGG + chr4_4:63243072-63243091 Msa0694000:intron 30.0%
TGGAACATAGAATAACTACA+TGG - chr4_4:63243307-63243326 None:intergenic 30.0%
CCTCAGATAAAAGAGAAATA+GGG - chr4_4:63243499-63243518 None:intergenic 30.0%
!! CCTATTTCTCTTTTATCTGA+GGG + chr4_4:63243497-63243516 Msa0694000:intron 30.0%
TTGTTATAATTGCTGCATAC+TGG - chr4_4:63243581-63243600 None:intergenic 30.0%
TCAACTCGCATTCAATTTAT+GGG - chr4_4:63243610-63243629 None:intergenic 30.0%
TTCAACTCGCATTCAATTTA+TGG - chr4_4:63243611-63243630 None:intergenic 30.0%
! ATAAATTGAATGCGAGTTGA+AGG + chr4_4:63243610-63243629 Msa0694000:intron 30.0%
! GTTCACAATTCTTTTCATGT+TGG + chr4_4:63243715-63243734 Msa0694000:intron 30.0%
AAGACATGTTATCAACATCA+AGG - chr4_4:63243898-63243917 None:intergenic 30.0%
CGAGGTAAAAAGATGATATA+TGG + chr4_4:63243919-63243938 Msa0694000:intron 30.0%
GAGAGAGAGTAATTAAAGGA+AGG - chr4_4:63239239-63239258 None:intergenic 35.0%
!! CGTTTTTATCGGTGTTTTGT+TGG + chr4_4:63239634-63239653 Msa0694000:intron 35.0%
!! TTTTATCGGTGTTTTGTTGG+AGG + chr4_4:63239637-63239656 Msa0694000:intron 35.0%
! AGTTTGTGTGTGTGAGTTTT+AGG + chr4_4:63240104-63240123 Msa0694000:intron 35.0%
TTATTGATCTGTAGACGAAG+TGG - chr4_4:63240139-63240158 None:intergenic 35.0%
CAAGACATAATCTTACTGCA+AGG - chr4_4:63240371-63240390 None:intergenic 35.0%
!!! GGTCTAAGGATTTTAAGACT+TGG + chr4_4:63240432-63240451 Msa0694000:intron 35.0%
AAGCACTATAAAAGGGGAAA+AGG - chr4_4:63240499-63240518 None:intergenic 35.0%
! TTTTCCCCTTTTATAGTGCT+TGG + chr4_4:63240498-63240517 Msa0694000:intron 35.0%
! TTTCCCCTTTTATAGTGCTT+GGG + chr4_4:63240499-63240518 Msa0694000:intron 35.0%
CATTTAGGAGGTTGTATAGA+AGG - chr4_4:63240525-63240544 None:intergenic 35.0%
! TGTATCGATAATCCAATAGC+TGG + chr4_4:63240621-63240640 Msa0694000:intron 35.0%
TTAGTTTCCTCTTATCTTGG+TGG + chr4_4:63240680-63240699 Msa0694000:intron 35.0%
! TAGTTTTCCACCAAGATAAG+AGG - chr4_4:63240690-63240709 None:intergenic 35.0%
GAAAACTAGACATGCAAAAG+TGG + chr4_4:63240702-63240721 Msa0694000:intron 35.0%
AAACTAGACATGCAAAAGTG+GGG + chr4_4:63240704-63240723 Msa0694000:intron 35.0%
ACAAATGTCATTGTCATGCT+TGG + chr4_4:63240741-63240760 Msa0694000:intron 35.0%
! ATTAAAGCTGTGAGTTTTCC+TGG + chr4_4:63240812-63240831 Msa0694000:intron 35.0%
TTTATGAGTAGATTGTCACC+AGG - chr4_4:63240833-63240852 None:intergenic 35.0%
TAATTTCTGATTCCGTGGTA+AGG - chr4_4:63240917-63240936 None:intergenic 35.0%
ACCACGGAATCAGAAATTAT+TGG + chr4_4:63240918-63240937 Msa0694000:intron 35.0%
ACCAATAATTTCTGATTCCG+TGG - chr4_4:63240922-63240941 None:intergenic 35.0%
AATCTCCAGCTATGTATAAG+AGG - chr4_4:63241226-63241245 None:intergenic 35.0%
TCTGCTCATTAATTTAGGTG+GGG + chr4_4:63241266-63241285 Msa0694000:intron 35.0%
!! GGTAACTTGATTTTGATGCA+AGG + chr4_4:63241287-63241306 Msa0694000:exon 35.0%
!! TGATTTTGATGCAAGGTCAA+AGG + chr4_4:63241294-63241313 Msa0694000:exon 35.0%
CATGTTAACAATTGTTGGGA+AGG - chr4_4:63241333-63241352 None:intergenic 35.0%
CAAAAAGGAAGGATGAATTC+TGG - chr4_4:63241663-63241682 None:intergenic 35.0%
! ATTCATCCTTCCTTTTTGCA+AGG + chr4_4:63241665-63241684 Msa0694000:CDS 35.0%
!! ACATCCCAGGGTATTAATTT+TGG + chr4_4:63241704-63241723 Msa0694000:CDS 35.0%
CCATACCAAAATTAATACCC+TGG - chr4_4:63241712-63241731 None:intergenic 35.0%
!! CCAGGGTATTAATTTTGGTA+TGG + chr4_4:63241709-63241728 Msa0694000:CDS 35.0%
GATAGAGAGAAGACATCAAT+TGG + chr4_4:63241812-63241831 Msa0694000:CDS 35.0%
GTTGCATAGAACTATCTTCA+AGG - chr4_4:63241958-63241977 None:intergenic 35.0%
TCCCTTGTACAATCTGAAAA+TGG + chr4_4:63242001-63242020 Msa0694000:CDS 35.0%
TCTGTTGATCTTAATGTTCC+TGG + chr4_4:63242040-63242059 Msa0694000:CDS 35.0%
TTGTATTCTGCTGAAATGGA+GGG - chr4_4:63242111-63242130 None:intergenic 35.0%
TTCCAATGCATTTCCTTCAA+TGG + chr4_4:63242153-63242172 Msa0694000:CDS 35.0%
TACCATTGAAGGAAATGCAT+TGG - chr4_4:63242158-63242177 None:intergenic 35.0%
! TCCTTCAATGGTAAGTATTG+CGG + chr4_4:63242165-63242184 Msa0694000:CDS 35.0%
! AAATTGAGAGGTACAGATTC+CGG - chr4_4:63242247-63242266 None:intergenic 35.0%
CCTGTTGATGTTAAATTGAG+AGG - chr4_4:63242259-63242278 None:intergenic 35.0%
CCTCTCAATTTAACATCAAC+AGG + chr4_4:63242256-63242275 Msa0694000:CDS 35.0%
TCTCTCATTTAACGAATCCT+TGG + chr4_4:63242327-63242346 Msa0694000:CDS 35.0%
GCTATAAGAACTTGAAGATC+TGG - chr4_4:63242476-63242495 None:intergenic 35.0%
! TCTTCAAGTTCTTATAGCTC+AGG + chr4_4:63242478-63242497 Msa0694000:CDS 35.0%
TTAAGAATCTTCCCAAGAGA+TGG + chr4_4:63242529-63242548 Msa0694000:CDS 35.0%
! CTCTCTGTAGATTTTCTGAT+GGG - chr4_4:63242726-63242745 None:intergenic 35.0%
! ACTCTCTGTAGATTTTCTGA+TGG - chr4_4:63242727-63242746 None:intergenic 35.0%
! ATAAATGATGGTCTTGGATG+TGG - chr4_4:63242871-63242890 None:intergenic 35.0%
TCCAAGACCATCATTTATGA+CGG + chr4_4:63242873-63242892 Msa0694000:CDS 35.0%
! ATCATTTATGACGGAGAGAA+GGG + chr4_4:63242882-63242901 Msa0694000:CDS 35.0%
AACATTACCCTTTGACAATG+AGG + chr4_4:63242939-63242958 Msa0694000:CDS 35.0%
ACATTACCCTTTGACAATGA+GGG + chr4_4:63242940-63242959 Msa0694000:CDS 35.0%
AGAATACCTCAGATATAAGC+CGG - chr4_4:63242972-63242991 None:intergenic 35.0%
GAAATATCATCATACCAGCA+TGG - chr4_4:63243048-63243067 None:intergenic 35.0%
GTTGTCTGAATTCTAAATCC+AGG - chr4_4:63243093-63243112 None:intergenic 35.0%
! GGATTTAGAATTCAGACAAC+AGG + chr4_4:63243093-63243112 Msa0694000:intron 35.0%
ATACGATAAACAGTATAGCC+TGG + chr4_4:63243157-63243176 Msa0694000:intron 35.0%
GTATAGCCTGGTAATACTTA+TGG + chr4_4:63243169-63243188 Msa0694000:intron 35.0%
TCAAGACCATAAGTATTACC+AGG - chr4_4:63243178-63243197 None:intergenic 35.0%
! ACTACATGGTTAGTTCATGT+AGG - chr4_4:63243293-63243312 None:intergenic 35.0%
TGATTTCACGACACAACATA+TGG - chr4_4:63243423-63243442 None:intergenic 35.0%
!! CCCTATTTCTCTTTTATCTG+AGG + chr4_4:63243496-63243515 Msa0694000:intron 35.0%
CCCTCAGATAAAAGAGAAAT+AGG - chr4_4:63243500-63243519 None:intergenic 35.0%
CAACTCGCATTCAATTTATG+GGG - chr4_4:63243609-63243628 None:intergenic 35.0%
TAGCATTCTCAATAGTCTAC+AGG - chr4_4:63243763-63243782 None:intergenic 35.0%
ACAATGCAAATGTAGGTCAA+AGG - chr4_4:63243801-63243820 None:intergenic 35.0%
AATCCTGACAATGCAAATGT+AGG - chr4_4:63243808-63243827 None:intergenic 35.0%
!! TGTTGATAACATGTCTTACG+AGG + chr4_4:63243901-63243920 Msa0694000:CDS 35.0%
ACTTGGATTACAGGAATTGT+TGG + chr4_4:63243988-63244007 Msa0694000:intron 35.0%
ATTACAGGAATTGTTGGCAT+TGG + chr4_4:63243994-63244013 Msa0694000:intron 35.0%
! TATGTTGATGGACAGAATCT+CGG + chr4_4:63244248-63244267 Msa0694000:CDS 35.0%
ATGGATATGATATGTGAGGA+GGG - chr4_4:63244391-63244410 None:intergenic 35.0%
AATGGATATGATATGTGAGG+AGG - chr4_4:63244392-63244411 None:intergenic 35.0%
AACTTCCTCTCATCTTAGAT+TGG + chr4_4:63244464-63244483 Msa0694000:three_prime_UTR 35.0%
ACTTCCTCTCATCTTAGATT+GGG + chr4_4:63244465-63244484 Msa0694000:three_prime_UTR 35.0%
! TTGGTGGTTAAGCTATATAG+TGG + chr4_4:63244527-63244546 Msa0694000:three_prime_UTR 35.0%
GATCCTGAATTGAAATGGGT+GGG - chr4_4:63239426-63239445 None:intergenic 40.0%
AGATCCTGAATTGAAATGGG+TGG - chr4_4:63239427-63239446 None:intergenic 40.0%
! ATTCAGGATCTCTTTTCCTC+TGG + chr4_4:63239436-63239455 Msa0694000:five_prime_UTR 40.0%
!!! AGTTCGGTTTTTTTAGGAGG+TGG + chr4_4:63239555-63239574 Msa0694000:intron 40.0%
!!! TTGTGTGTGTGAGTTTTAGG+TGG + chr4_4:63240107-63240126 Msa0694000:intron 40.0%
GGGTACACAACAAATGTAGA+GGG - chr4_4:63240328-63240347 None:intergenic 40.0%
AGGGTACACAACAAATGTAG+AGG - chr4_4:63240329-63240348 None:intergenic 40.0%
CTTACTGCAAGGAAATCAGT+AGG - chr4_4:63240360-63240379 None:intergenic 40.0%
GACCAAGTGAGCTATAAGTT+GGG - chr4_4:63240416-63240435 None:intergenic 40.0%
AGACCAAGTGAGCTATAAGT+TGG - chr4_4:63240417-63240436 None:intergenic 40.0%
CTTATAGCTCACTTGGTCTA+AGG + chr4_4:63240418-63240437 Msa0694000:intron 40.0%
!! GGTGTGACATTTATTTTCGG+AGG + chr4_4:63240453-63240472 Msa0694000:intron 40.0%
AAGGCCCAAGCACTATAAAA+GGG - chr4_4:63240506-63240525 None:intergenic 40.0%
CCACAAAGCTATGAGATTCA+CGG - chr4_4:63240572-63240591 None:intergenic 40.0%
AACTAGACATGCAAAAGTGG+GGG + chr4_4:63240705-63240724 Msa0694000:intron 40.0%
TCATTGTCATGCTTGGTATG+TGG + chr4_4:63240748-63240767 Msa0694000:intron 40.0%
CATTGTCATGCTTGGTATGT+GGG + chr4_4:63240749-63240768 Msa0694000:intron 40.0%
ATTGTCATGCTTGGTATGTG+GGG + chr4_4:63240750-63240769 Msa0694000:intron 40.0%
ATGCATGAGTTACGACACAT+AGG - chr4_4:63241173-63241192 None:intergenic 40.0%
! TAAGAGGCACAAAAGAGTCA+TGG - chr4_4:63241210-63241229 None:intergenic 40.0%
TTGTGCCTCTTATACATAGC+TGG + chr4_4:63241218-63241237 Msa0694000:intron 40.0%
! TTTTGATGCAAGGTCAAAGG+AGG + chr4_4:63241297-63241316 Msa0694000:exon 40.0%
AAGGTCAAAGGAGGACTATT+GGG + chr4_4:63241306-63241325 Msa0694000:CDS 40.0%
! ATATCAGTGCCGTTAGAACT+AGG - chr4_4:63241365-63241384 None:intergenic 40.0%
! TGCATTTTGCGCATGATTCA+AGG - chr4_4:63241402-63241421 None:intergenic 40.0%
CGCAAAATGCAGTAGATTTC+CGG + chr4_4:63241411-63241430 Msa0694000:CDS 40.0%
ATTTCCGGCTGTCAGATTAT+AGG + chr4_4:63241426-63241445 Msa0694000:CDS 40.0%
TTTCCGGCTGTCAGATTATA+GGG + chr4_4:63241427-63241446 Msa0694000:CDS 40.0%
! GGTCCTAATGTGAGCTTTAA+TGG + chr4_4:63241485-63241504 Msa0694000:CDS 40.0%
CAGCCATTAAAGCTCACATT+AGG - chr4_4:63241491-63241510 None:intergenic 40.0%
! CTAATGTGAGCTTTAATGGC+TGG + chr4_4:63241489-63241508 Msa0694000:CDS 40.0%
! AGCTTTAATGGCTGGAATAC+CGG + chr4_4:63241497-63241516 Msa0694000:CDS 40.0%
! TTAGACCATCATCGTTGACT+TGG - chr4_4:63241553-63241572 None:intergenic 40.0%
AGGAAGGATGAATTCTGGAT+TGG - chr4_4:63241658-63241677 None:intergenic 40.0%
AATACCCTGGGATGTATGAT+TGG - chr4_4:63241699-63241718 None:intergenic 40.0%
ATTGCTAACTCATCTGATCG+CGG + chr4_4:63241737-63241756 Msa0694000:CDS 40.0%
! TTGCTGATGAAGCACCTATT+TGG - chr4_4:63241853-63241872 None:intergenic 40.0%
! TTCAAGGGTCTTTCTTTTGC+AGG - chr4_4:63241942-63241961 None:intergenic 40.0%
AGTTCTATGCAACTGTGTAC+TGG + chr4_4:63241965-63241984 Msa0694000:CDS 40.0%
CTTAATGTTCCTGGAAGCTT+AGG + chr4_4:63242049-63242068 Msa0694000:CDS 40.0%
! AGGTGATTTGTCACCTTTAG+AGG + chr4_4:63242069-63242088 Msa0694000:CDS 40.0%
GTAACACGGAAATCCTCTAA+AGG - chr4_4:63242085-63242104 None:intergenic 40.0%
CTTGTATTCTGCTGAAATGG+AGG - chr4_4:63242112-63242131 None:intergenic 40.0%
TCCGCAATACTTACCATTGA+AGG - chr4_4:63242169-63242188 None:intergenic 40.0%
! GGTAAGTATTGCGGAAAATG+TGG + chr4_4:63242174-63242193 Msa0694000:CDS 40.0%
GTATTGCGGAAAATGTGGAA+AGG + chr4_4:63242179-63242198 Msa0694000:CDS 40.0%
CTCCTATCAAAGTTTCGTAG+AGG - chr4_4:63242205-63242224 None:intergenic 40.0%
AATGACCCATCTACATCATC+CGG + chr4_4:63242225-63242244 Msa0694000:CDS 40.0%
AGATTCCGGATGATGTAGAT+GGG - chr4_4:63242233-63242252 None:intergenic 40.0%
TCGTTAAATGAGAGAGAGCT+GGG - chr4_4:63242322-63242341 None:intergenic 40.0%
TTCGTTAAATGAGAGAGAGC+TGG - chr4_4:63242323-63242342 None:intergenic 40.0%
AGCTGCTAACCTTAAATCCA+AGG - chr4_4:63242347-63242366 None:intergenic 40.0%
! TTGGATTTAAGGTTAGCAGC+TGG + chr4_4:63242346-63242365 Msa0694000:CDS 40.0%
TCTAGCAATGTGAACAATGC+TGG + chr4_4:63242616-63242635 Msa0694000:CDS 40.0%
TTAAATGTCCAGCTGGGATT+AGG - chr4_4:63242694-63242713 None:intergenic 40.0%
TCATGGTTAAATGTCCAGCT+GGG - chr4_4:63242700-63242719 None:intergenic 40.0%
TTCATGGTTAAATGTCCAGC+TGG - chr4_4:63242701-63242720 None:intergenic 40.0%
! GATTTTCTGATGGGACTTCA+TGG - chr4_4:63242717-63242736 None:intergenic 40.0%
TGAGCTGATTGAGGGAAAAA+GGG - chr4_4:63242770-63242789 None:intergenic 40.0%
TCAGCATCTGGTACTCATAA+TGG + chr4_4:63242787-63242806 Msa0694000:CDS 40.0%
AACCCTGAGAAAATGAAGGA+GGG - chr4_4:63242834-63242853 None:intergenic 40.0%
CTAGAACCCTGAGAAAATGA+AGG - chr4_4:63242838-63242857 None:intergenic 40.0%
TCCGTCATAAATGATGGTCT+TGG - chr4_4:63242877-63242896 None:intergenic 40.0%
CTTCTCTCCGTCATAAATGA+TGG - chr4_4:63242883-63242902 None:intergenic 40.0%
! CATCATTTATGACGGAGAGA+AGG + chr4_4:63242881-63242900 Msa0694000:CDS 40.0%
! TCATTTATGACGGAGAGAAG+GGG + chr4_4:63242883-63242902 Msa0694000:CDS 40.0%
GGTAATGTTCGCAATGAATG+AGG - chr4_4:63242928-63242947 None:intergenic 40.0%
CATTACCCTTTGACAATGAG+GGG + chr4_4:63242941-63242960 Msa0694000:CDS 40.0%
TATGCTGTACTTCTGCTTGA+AGG + chr4_4:63243017-63243036 Msa0694000:intron 40.0%
TGTCGTGAAATCAGTATTCG+AGG + chr4_4:63243430-63243449 Msa0694000:intron 40.0%
TGACCTACATTTGCATTGTC+AGG + chr4_4:63243802-63243821 Msa0694000:intron 40.0%
TTTGACCCGTTCCTATATCA+TGG + chr4_4:63243836-63243855 Msa0694000:CDS 40.0%
TTTCAGCCATGCCATGATAT+AGG - chr4_4:63243850-63243869 None:intergenic 40.0%
!! CGTTAGTTCTGACTTCAACT+TGG + chr4_4:63243971-63243990 Msa0694000:intron 40.0%
CTGACTTCAACTTGGATTAC+AGG + chr4_4:63243979-63243998 Msa0694000:intron 40.0%
ACTTGTTCTTCCATGATCGT+AGG + chr4_4:63244220-63244239 Msa0694000:intron 40.0%
ACATATTCCTCCTACGATCA+TGG - chr4_4:63244233-63244252 None:intergenic 40.0%
TCGTAGGAGGAATATGTTGA+TGG + chr4_4:63244236-63244255 Msa0694000:intron 40.0%
GTGCCCAATTTGCAAAACAA+CGG + chr4_4:63244337-63244356 Msa0694000:CDS 40.0%
!! AGGCCGTTGTTTTGCAAATT+GGG - chr4_4:63244343-63244362 None:intergenic 40.0%
!! AAGGCCGTTGTTTTGCAAAT+TGG - chr4_4:63244344-63244363 None:intergenic 40.0%
AATTTGCAAAACAACGGCCT+TGG + chr4_4:63244343-63244362 Msa0694000:CDS 40.0%
TCACCCACCCATTTCAATTC+AGG + chr4_4:63239420-63239439 Msa0694000:five_prime_UTR 45.0%
CTGGAAATGCCGATATTGCT+AGG + chr4_4:63240055-63240074 Msa0694000:intron 45.0%
AAATGCCGATATTGCTAGGC+TGG + chr4_4:63240059-63240078 Msa0694000:intron 45.0%
GATGTCCAGCCTAGCAATAT+CGG - chr4_4:63240067-63240086 None:intergenic 45.0%
ACTCACACACACAAACTGCA+AGG - chr4_4:63240101-63240120 None:intergenic 45.0%
AAATCAGTAGGAGCTCGGAA+GGG - chr4_4:63240348-63240367 None:intergenic 45.0%
CAAGGAAATCAGTAGGAGCT+CGG - chr4_4:63240353-63240372 None:intergenic 45.0%
! CAAGTGAGCTATAAGTTGGG+TGG - chr4_4:63240413-63240432 None:intergenic 45.0%
CACCCAACTTATAGCTCACT+TGG + chr4_4:63240411-63240430 Msa0694000:intron 45.0%
GGGAAAAGGTTGCATCATGA+GGG - chr4_4:63240485-63240504 None:intergenic 45.0%
AGGCCCAAGCACTATAAAAG+GGG - chr4_4:63240505-63240524 None:intergenic 45.0%
GAAGGCCCAAGCACTATAAA+AGG - chr4_4:63240507-63240526 None:intergenic 45.0%
! CCGTGAATCTCATAGCTTTG+TGG + chr4_4:63240569-63240588 Msa0694000:intron 45.0%
ACTAGACATGCAAAAGTGGG+GGG + chr4_4:63240706-63240725 Msa0694000:intron 45.0%
CTGGTCTAGATCTCCGATTA+AGG + chr4_4:63240880-63240899 Msa0694000:intron 45.0%
GGAGCTCATGCATCCTTAAT+CGG - chr4_4:63240896-63240915 None:intergenic 45.0%
TCGTAACTCATGCATTCTGC+AGG + chr4_4:63241178-63241197 Msa0694000:intron 45.0%
CAAGGTCAAAGGAGGACTAT+TGG + chr4_4:63241305-63241324 Msa0694000:CDS 45.0%
!! ATGCAAGGGCCTAGTTCTAA+CGG + chr4_4:63241353-63241372 Msa0694000:CDS 45.0%
TTCCGGCTGTCAGATTATAG+GGG + chr4_4:63241428-63241447 Msa0694000:CDS 45.0%
TCAGATTATAGGGGGTCTTC+TGG + chr4_4:63241437-63241456 Msa0694000:CDS 45.0%
ACCAGATTCAGTCCAGAACT+GGG - chr4_4:63241527-63241546 None:intergenic 45.0%
GTCAACCAAGTCAACGATGA+TGG + chr4_4:63241545-63241564 Msa0694000:CDS 45.0%
! TTCATGCAGTGCTATTGCTG+AGG + chr4_4:63241595-63241614 Msa0694000:CDS 45.0%
CCAAGTAATTGCCTTTCCTC+GGG - chr4_4:63241632-63241651 None:intergenic 45.0%
CCCAAGTAATTGCCTTTCCT+CGG - chr4_4:63241633-63241652 None:intergenic 45.0%
CCGAGGAAAGGCAATTACTT+GGG + chr4_4:63241630-63241649 Msa0694000:CDS 45.0%
CTGGAACCTTGCAAAAAGGA+AGG - chr4_4:63241674-63241693 None:intergenic 45.0%
AGCTCCAATCATACATCCCA+GGG + chr4_4:63241692-63241711 Msa0694000:CDS 45.0%
TTGCTAACTCATCTGATCGC+GGG + chr4_4:63241738-63241757 Msa0694000:CDS 45.0%
! AGGGTCTTTCTTTTGCAGGA+AGG - chr4_4:63241938-63241957 None:intergenic 45.0%
TCTATGCAACTGTGTACTGG+AGG + chr4_4:63241968-63241987 Msa0694000:CDS 45.0%
GACAAATCACCTAAGCTTCC+AGG - chr4_4:63242061-63242080 None:intergenic 45.0%
! GAAATGGAGGGCTAGTAACA+CGG - chr4_4:63242099-63242118 None:intergenic 45.0%
GGCCTCTACGAAACTTTGAT+AGG + chr4_4:63242200-63242219 Msa0694000:CDS 45.0%
CAGATTCCGGATGATGTAGA+TGG - chr4_4:63242234-63242253 None:intergenic 45.0%
TGGGTATTTGATGCGGAGAA+GGG - chr4_4:63242303-63242322 None:intergenic 45.0%
AGAGAGCTGGGTATTTGATG+CGG - chr4_4:63242310-63242329 None:intergenic 45.0%
! GGATTAGCAGCTCTATTCCA+CGG - chr4_4:63242445-63242464 None:intergenic 45.0%
TAGAGCTGCTAATCCTAGAG+TGG + chr4_4:63242450-63242469 Msa0694000:CDS 45.0%
GAAGATGCAGGCATGTTCAT+GGG - chr4_4:63242565-63242584 None:intergenic 45.0%
TGAAGATGCAGGCATGTTCA+TGG - chr4_4:63242566-63242585 None:intergenic 45.0%
ATGAACATGCCTGCATCTTC+AGG + chr4_4:63242565-63242584 Msa0694000:CDS 45.0%
AGCAATGTGAACAATGCTGG+AGG + chr4_4:63242619-63242638 Msa0694000:CDS 45.0%
GTTTGAACTAGATCCGATCC+AGG - chr4_4:63242659-63242678 None:intergenic 45.0%
ATTGAGGGAAAAAGGGACCA+GGG - chr4_4:63242763-63242782 None:intergenic 45.0%
CTGAGCTGATTGAGGGAAAA+AGG - chr4_4:63242771-63242790 None:intergenic 45.0%
GAACCCTGAGAAAATGAAGG+AGG - chr4_4:63242835-63242854 None:intergenic 45.0%
CTGAGGGAGATACTCATCTT+CGG + chr4_4:63243513-63243532 Msa0694000:intron 45.0%
CCATGCCATGATATAGGAAC+GGG - chr4_4:63243844-63243863 None:intergenic 45.0%
GCCATGCCATGATATAGGAA+CGG - chr4_4:63243845-63243864 None:intergenic 45.0%
! ACAGGAATTGTTGGCATTGG+AGG + chr4_4:63243997-63244016 Msa0694000:intron 45.0%
TGTTCTTCCATGATCGTAGG+AGG + chr4_4:63244223-63244242 Msa0694000:intron 45.0%
!! AATCTCGGTTTGCTGGATTG+TGG + chr4_4:63244263-63244282 Msa0694000:CDS 45.0%
!! ATCTCGGTTTGCTGGATTGT+GGG + chr4_4:63244264-63244283 Msa0694000:CDS 45.0%
ACTGTGTGATGCAGTTACTG+TGG - chr4_4:63244298-63244317 None:intergenic 45.0%
ACAGTAACTGCATCACACAG+TGG + chr4_4:63244297-63244316 Msa0694000:CDS 45.0%
! CGTTCCCAATCTAAGATGAG+AGG - chr4_4:63244472-63244491 None:intergenic 45.0%
!!! ATTTAATTTTTATTTTTGTT+TGG + chr4_4:63239806-63239825 Msa0694000:intron 5.0%
TTCGTAAGGCCTAGCTCAAC+TGG + chr4_4:63240036-63240055 Msa0694000:intron 50.0%
TCGGCATTTCCAGTTGAGCT+AGG - chr4_4:63240048-63240067 None:intergenic 50.0%
GAAATCAGTAGGAGCTCGGA+AGG - chr4_4:63240349-63240368 None:intergenic 50.0%
GGGGAAAAGGTTGCATCATG+AGG - chr4_4:63240486-63240505 None:intergenic 50.0%
GATGCATGAGCTCCTTACCA+CGG + chr4_4:63240902-63240921 Msa0694000:intron 50.0%
TCCGGCTGTCAGATTATAGG+GGG + chr4_4:63241429-63241448 Msa0694000:CDS 50.0%
ACCCCCTATAATCTGACAGC+CGG - chr4_4:63241433-63241452 None:intergenic 50.0%
ACTGCGTGTTTACGTGGTAC+TGG + chr4_4:63241464-63241483 Msa0694000:CDS 50.0%
AATACCGGTGAACCCAGTTC+TGG + chr4_4:63241512-63241531 Msa0694000:CDS 50.0%
!! ACCCAGTTCTGGACTGAATC+TGG + chr4_4:63241523-63241542 Msa0694000:CDS 50.0%
GACCAGATTCAGTCCAGAAC+TGG - chr4_4:63241528-63241547 None:intergenic 50.0%
! TGCAGTGCTATTGCTGAGGA+TGG + chr4_4:63241599-63241618 Msa0694000:CDS 50.0%
! ATGGTCTAAGACCCGAGGAA+AGG + chr4_4:63241618-63241637 Msa0694000:CDS 50.0%
CCCGAGGAAAGGCAATTACT+TGG + chr4_4:63241629-63241648 Msa0694000:CDS 50.0%
GGAGCTGGAACCTTGCAAAA+AGG - chr4_4:63241678-63241697 None:intergenic 50.0%
CTGGGATGTATGATTGGAGC+TGG - chr4_4:63241693-63241712 None:intergenic 50.0%
CAGCTCCAATCATACATCCC+AGG + chr4_4:63241691-63241710 Msa0694000:CDS 50.0%
AACTCATCTGATCGCGGGAA+AGG + chr4_4:63241743-63241762 Msa0694000:CDS 50.0%
CGCGGGAAAGGTAAAGAAAC+TGG + chr4_4:63241755-63241774 Msa0694000:CDS 50.0%
GTGCTTCATCAGCAAGCTCT+GGG + chr4_4:63241858-63241877 Msa0694000:CDS 50.0%
!! ATCAGCAAGCTCTGGGTACA+TGG + chr4_4:63241865-63241884 Msa0694000:CDS 50.0%
!! AAGCTCTGGGTACATGGCTT+GGG + chr4_4:63241871-63241890 Msa0694000:CDS 50.0%
! TACATGGCTTGGGGAGATAG+TGG + chr4_4:63241881-63241900 Msa0694000:CDS 50.0%
CTGGGTATTTGATGCGGAGA+AGG - chr4_4:63242304-63242323 None:intergenic 50.0%
AAAGGATGCATGTGCAGGGA+TGG - chr4_4:63242421-63242440 None:intergenic 50.0%
CGGAAAAGGATGCATGTGCA+GGG - chr4_4:63242425-63242444 None:intergenic 50.0%
ACGGAAAAGGATGCATGTGC+AGG - chr4_4:63242426-63242445 None:intergenic 50.0%
! TGCACATGCATCCTTTTCCG+TGG + chr4_4:63242425-63242444 Msa0694000:CDS 50.0%
GCAGCTCTATTCCACGGAAA+AGG - chr4_4:63242439-63242458 None:intergenic 50.0%
CTTGAAGATCTGGCCACTCT+AGG - chr4_4:63242466-63242485 None:intergenic 50.0%
GATGCTCGGTACCATCTCTT+GGG - chr4_4:63242543-63242562 None:intergenic 50.0%
AGGCATGTTCATGGGATGCT+CGG - chr4_4:63242557-63242576 None:intergenic 50.0%
GGTTCATGTCCTGAAGATGC+AGG - chr4_4:63242577-63242596 None:intergenic 50.0%
TCTTCAGGACATGAACCTGC+AGG + chr4_4:63242580-63242599 Msa0694000:CDS 50.0%
GAAGATGCATACCAACCTGC+AGG - chr4_4:63242598-63242617 None:intergenic 50.0%
ATACCTCCTCCATCCTGGAT+CGG + chr4_4:63242643-63242662 Msa0694000:CDS 50.0%
GAACTAGATCCGATCCAGGA+TGG - chr4_4:63242655-63242674 None:intergenic 50.0%
GAGTTTCAGAGTTCAGTCCC+TGG + chr4_4:63242743-63242762 Msa0694000:CDS 50.0%
GATTGAGGGAAAAAGGGACC+AGG - chr4_4:63242764-63242783 None:intergenic 50.0%
CCAGATGCTGAGCTGATTGA+GGG - chr4_4:63242778-63242797 None:intergenic 50.0%
ACCAGATGCTGAGCTGATTG+AGG - chr4_4:63242779-63242798 None:intergenic 50.0%
CTGAGAAAATGAAGGAGGGC+CGG - chr4_4:63242830-63242849 None:intergenic 50.0%
! GGCCCTCCTTCATTTTCTCA+GGG + chr4_4:63242829-63242848 Msa0694000:CDS 50.0%
! TTTATGACGGAGAGAAGGGG+TGG + chr4_4:63242886-63242905 Msa0694000:CDS 50.0%
CGTCTCCCCTCATTGTCAAA+GGG - chr4_4:63242949-63242968 None:intergenic 50.0%
GCTTGAAGGATATGCCATGC+TGG + chr4_4:63243031-63243050 Msa0694000:intron 50.0%
!! GCATGCTTTGAAGCAAGCAC+AGG + chr4_4:63243737-63243756 Msa0694000:intron 50.0%
CCCGTTCCTATATCATGGCA+TGG + chr4_4:63243841-63243860 Msa0694000:CDS 50.0%
ACGTAGAGCAGCATTGCTGA+TGG - chr4_4:63243954-63243973 None:intergenic 50.0%
! TTGGCATTGGAGGAGCGTAT+AGG + chr4_4:63244007-63244026 Msa0694000:CDS 50.0%
CGTATAGGAGACGTAAGCAC+TGG + chr4_4:63244022-63244041 Msa0694000:CDS 50.0%
! TGGACAGAATCTCGGTTTGC+TGG + chr4_4:63244256-63244275 Msa0694000:CDS 50.0%
ATGGGTGGGTGAGAGTTCTG+AGG - chr4_4:63239412-63239431 None:intergenic 55.0%
GGTGAGACTGCGTGTTTACG+TGG + chr4_4:63241458-63241477 Msa0694000:CDS 55.0%
CAGTCCAGAACTGGGTTCAC+CGG - chr4_4:63241519-63241538 None:intergenic 55.0%
! TGAGGATGGTCTAAGACCCG+AGG + chr4_4:63241613-63241632 Msa0694000:CDS 55.0%
GGTGCTTCATCAGCAAGCTC+TGG + chr4_4:63241857-63241876 Msa0694000:CDS 55.0%
!! CAAGCTCTGGGTACATGGCT+TGG + chr4_4:63241870-63241889 Msa0694000:CDS 55.0%
!! AGCTCTGGGTACATGGCTTG+GGG + chr4_4:63241872-63241891 Msa0694000:CDS 55.0%
GGATGCTCGGTACCATCTCT+TGG - chr4_4:63242544-63242563 None:intergenic 55.0%
CAGGACATGAACCTGCAGGT+TGG + chr4_4:63242584-63242603 Msa0694000:CDS 55.0%
CTAGATCCGATCCAGGATGG+AGG - chr4_4:63242652-63242671 None:intergenic 55.0%
AGCTGGGATTAGGCAACGAG+TGG - chr4_4:63242684-63242703 None:intergenic 55.0%
ACTCGTTGCCTAATCCCAGC+TGG + chr4_4:63242683-63242702 Msa0694000:CDS 55.0%
CCCTCAATCAGCTCAGCATC+TGG + chr4_4:63242775-63242794 Msa0694000:CDS 55.0%
GGCCATTCCTCCTCTACTTC+CGG + chr4_4:63242808-63242827 Msa0694000:CDS 55.0%
! CGGCCCTCCTTCATTTTCTC+AGG + chr4_4:63242828-63242847 Msa0694000:CDS 55.0%
GCGTCTCCCCTCATTGTCAA+AGG - chr4_4:63242950-63242969 None:intergenic 55.0%
TTGACAATGAGGGGAGACGC+CGG + chr4_4:63242950-63242969 Msa0694000:CDS 55.0%
!! GAGACGCCGGCTTATATCTG+AGG + chr4_4:63242963-63242982 Msa0694000:CDS 55.0%
CTAGCAGGACTTGGCGAATC+TGG - chr4_4:63243327-63243346 None:intergenic 55.0%
GCCAAGTCCTGCTAGCAATG+CGG + chr4_4:63243332-63243351 Msa0694000:CDS 55.0%
TCCGCATTGCTAGCAGGACT+TGG - chr4_4:63243336-63243355 None:intergenic 55.0%
AAGTCCTGCTAGCAATGCGG+AGG + chr4_4:63243335-63243354 Msa0694000:CDS 55.0%
AGTCCTGCTAGCAATGCGGA+GGG + chr4_4:63243336-63243355 Msa0694000:CDS 55.0%
GGGTGAGAACTTACGAGCTG+AGG + chr4_4:63243357-63243376 Msa0694000:CDS 55.0%
GAGAGATTCTCCTCGTCACG+AGG - chr4_4:63244369-63244388 None:intergenic 55.0%
AGGTTAGCAGCTGGAGCAGC+TGG + chr4_4:63242355-63242374 Msa0694000:CDS 60.0%
GCATGTGCAGGGATGGTGAC+TGG - chr4_4:63242414-63242433 None:intergenic 60.0%
GAGGCATACCTCCTCCATCC+TGG + chr4_4:63242638-63242657 Msa0694000:CDS 60.0%
GATCCGATCCAGGATGGAGG+AGG - chr4_4:63242649-63242668 None:intergenic 60.0%
GGCCGGAAGTAGAGGAGGAA+TGG - chr4_4:63242813-63242832 None:intergenic 60.0%
TGAAGGAGGGCCGGAAGTAG+AGG - chr4_4:63242821-63242840 None:intergenic 60.0%
GTCCTGCTAGCAATGCGGAG+GGG + chr4_4:63243337-63243356 Msa0694000:CDS 60.0%
TTCTCCTCGTCACGAGGCCA+AGG - chr4_4:63244363-63244382 None:intergenic 60.0%
AGGAGGGCCGGAAGTAGAGG+AGG - chr4_4:63242818-63242837 None:intergenic 65.0%
CACCCCTCCGCATTGCTAGC+AGG - chr4_4:63243342-63243361 None:intergenic 65.0%
ACGGCCTTGGCCTCGTGACG+AGG + chr4_4:63244356-63244375 Msa0694000:exon 70.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 63239137 63244637 63239137 ID=Msa0694000;Name=Msa0694000
chr4_4 mRNA 63239137 63244637 63239137 ID=Msa0694000-mRNA-1;Parent=Msa0694000;Name=Msa0694000-mRNA-1;_AED=0.11;_eAED=0.11;_QI=340|1|1|1|0.8|0.66|6|264|702
chr4_4 exon 63239137 63239457 63239137 ID=Msa0694000-mRNA-1:exon:17733;Parent=Msa0694000-mRNA-1
chr4_4 exon 63241283 63242984 63241283 ID=Msa0694000-mRNA-1:exon:17734;Parent=Msa0694000-mRNA-1
chr4_4 exon 63243328 63243378 63243328 ID=Msa0694000-mRNA-1:exon:17735;Parent=Msa0694000-mRNA-1
chr4_4 exon 63243824 63243922 63243824 ID=Msa0694000-mRNA-1:exon:17736;Parent=Msa0694000-mRNA-1
chr4_4 exon 63244001 63244144 63244001 ID=Msa0694000-mRNA-1:exon:17737;Parent=Msa0694000-mRNA-1
chr4_4 exon 63244242 63244637 63244242 ID=Msa0694000-mRNA-1:exon:17738;Parent=Msa0694000-mRNA-1
chr4_4 five_prime_UTR 63239137 63239457 63239137 ID=Msa0694000-mRNA-1:five_prime_utr;Parent=Msa0694000-mRNA-1
chr4_4 five_prime_UTR 63241283 63241301 63241283 ID=Msa0694000-mRNA-1:five_prime_utr;Parent=Msa0694000-mRNA-1
chr4_4 CDS 63241302 63242984 63241302 ID=Msa0694000-mRNA-1:cds;Parent=Msa0694000-mRNA-1
chr4_4 CDS 63243328 63243378 63243328 ID=Msa0694000-mRNA-1:cds;Parent=Msa0694000-mRNA-1
chr4_4 CDS 63243824 63243922 63243824 ID=Msa0694000-mRNA-1:cds;Parent=Msa0694000-mRNA-1
chr4_4 CDS 63244001 63244144 63244001 ID=Msa0694000-mRNA-1:cds;Parent=Msa0694000-mRNA-1
chr4_4 CDS 63244242 63244373 63244242 ID=Msa0694000-mRNA-1:cds;Parent=Msa0694000-mRNA-1
chr4_4 three_prime_UTR 63244374 63244637 63244374 ID=Msa0694000-mRNA-1:three_prime_utr;Parent=Msa0694000-mRNA-1
Gene Sequence

>Msa0694000

ATGCAAGGTCAAAGGAGGACTATTGGGTCCTTCCCAACAATTGTTAACATGATGCAAGGGCCTAGTTCTAACGGCACTGATATGAATCATCAGTCTTCCTTGAATCATGCGCAAAATGCAGTAGATTTCCGGCTGTCAGATTATAGGGGGTCTTCTGGTGAGACTGCGTGTTTACGTGGTACTGGTCCTAATGTGAGCTTTAATGGCTGGAATACCGGTGAACCCAGTTCTGGACTGAATCTGGTCAACCAAGTCAACGATGATGGTCTAAAATCTGAACAAAGGTTGTCTTCTTCATGCAGTGCTATTGCTGAGGATGGTCTAAGACCCGAGGAAAGGCAATTACTTGGGAACCAATCCAGAATTCATCCTTCCTTTTTGCAAGGTTCCAGCTCCAATCATACATCCCAGGGTATTAATTTTGGTATGGAGCACATTGCTAACTCATCTGATCGCGGGAAAGGTAAAGAAACTGGTAACGGTGTTAATAACAACGATCCTTTTGGATTAGATAGAGAGAAGACATCAATTGGCAGTTCTTCATTCAACCAAATAGGTGCTTCATCAGCAAGCTCTGGGTACATGGCTTGGGGAGATAGTGGCAGTTCAAGTTCTTCTTTAGCTAATTGGGGTCCTTCCTGCAAAAGAAAGACCCTTGAAGATAGTTCTATGCAACTGTGTACTGGAGGAAGCTCGAGTTCCCTTGTACAATCTGAAAATGGTTACTGGCTTACTGATTCTGTTGATCTTAATGTTCCTGGAAGCTTAGGTGATTTGTCACCTTTAGAGGATTTCCGTGTTACTAGCCCTCCATTTCAGCAGAATACAAGAAATGAAGCGAGACAAGAAGCTTCCAATGCATTTCCTTCAATGGTAAGTATTGCGGAAAATGTGGAAAGGCCTCTACGAAACTTTGATAGGAGAATGACCCATCTACATCATCCGGAATCTGTACCTCTCAATTTAACATCAACAGGGAGTGCTAGACATCATAATTACCCTTCTCCGCATCAAATACCCAGCTCTCTCTCATTTAACGAATCCTTGGATTTAAGGTTAGCAGCTGGAGCAGCTGGAGTAACAGCTGCTAATTCTGCTGTGACACAAAACCAGTCACCATCCCTGCACATGCATCCTTTTCCGTGGAATAGAGCTGCTAATCCTAGAGTGGCCAGATCTTCAAGTTCTTATAGCTCAGGAGAAAGAGCAGTACGTGATGATTTTAATTTAAGAATCTTCCCAAGAGATGGTACCGAGCATCCCATGAACATGCCTGCATCTTCAGGACATGAACCTGCAGGTTGGTATGCATCTTCTAGCAATGTGAACAATGCTGGAGGCATACCTCCTCCATCCTGGATCGGATCTAGTTCAAACGTCCACTCGTTGCCTAATCCCAGCTGGACATTTAACCATGAAGTCCCATCAGAAAATCTACAGAGAGTTTCAGAGTTCAGTCCCTGGTCCCTTTTTCCCTCAATCAGCTCAGCATCTGGTACTCATAATGGCCATTCCTCCTCTACTTCCGGCCCTCCTTCATTTTCTCAGGGTTCTAGCAGTAATCAACCACATCCAAGACCATCATTTATGACGGAGAGAAGGGGTGGTGATGTTCTCTCTGCTCCTCATTCATTGCGAACATTACCCTTTGACAATGAGGGGAGACGCCGGCTTATATCTGAGATTCGCCAAGTCCTGCTAGCAATGCGGAGGGGTGAGAACTTACGAGCTGAGGATTATATGCTCTTTGACCCGTTCCTATATCATGGCATGGCTGAAATGCACGACAGACACAGAGAAATGCGCCTTGATGTTGATAACATGTCTTACGAGGAATTGTTGGCATTGGAGGAGCGTATAGGAGACGTAAGCACTGGACTGAGTGAAGATATAATTAATAAGTTGATGAAACAGCGATTTTACATGTCTCTCATGACAGAGTCTTCTTCTGATCTCGAACCTTGCTGTATCTGTCAGGAGGAATATGTTGATGGACAGAATCTCGGTTTGCTGGATTGTGGGCACGAGTTCCACAGTAACTGCATCACACAGTGGCTAATGCAGAAGAATCTGTGCCCAATTTGCAAAACAACGGCCTTGGCCTCGTGA
Protein sequence

>Msa0694000

MQGQRRTIGSFPTIVNMMQGPSSNGTDMNHQSSLNHAQNAVDFRLSDYRGSSGETACLRGTGPNVSFNGWNTGEPSSGLNLVNQVNDDGLKSEQRLSSSCSAIAEDGLRPEERQLLGNQSRIHPSFLQGSSSNHTSQGINFGMEHIANSSDRGKGKETGNGVNNNDPFGLDREKTSIGSSSFNQIGASSASSGYMAWGDSGSSSSSLANWGPSCKRKTLEDSSMQLCTGGSSSSLVQSENGYWLTDSVDLNVPGSLGDLSPLEDFRVTSPPFQQNTRNEARQEASNAFPSMVSIAENVERPLRNFDRRMTHLHHPESVPLNLTSTGSARHHNYPSPHQIPSSLSFNESLDLRLAAGAAGVTAANSAVTQNQSPSLHMHPFPWNRAANPRVARSSSSYSSGERAVRDDFNLRIFPRDGTEHPMNMPASSGHEPAGWYASSSNVNNAGGIPPPSWIGSSSNVHSLPNPSWTFNHEVPSENLQRVSEFSPWSLFPSISSASGTHNGHSSSTSGPPSFSQGSSSNQPHPRPSFMTERRGGDVLSAPHSLRTLPFDNEGRRRLISEIRQVLLAMRRGENLRAEDYMLFDPFLYHGMAEMHDRHREMRLDVDNMSYEELLALEERIGDVSTGLSEDIINKLMKQRFYMSLMTESSSDLEPCCICQEEYVDGQNLGLLDCGHEFHSNCITQWLMQKNLCPICKTTALAS*