AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1077940

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1077940 MtrunA17_Chr7g0262511 98.318 773 11 1 1 773 1 771 0.0 1562
Msa1077940 MtrunA17_Chr1g0183071 65.740 791 187 10 5 773 15 743 0.0 997
Msa1077940 MtrunA17_Chr4g0067151 33.333 108 65 4 73 176 85 189 5.76e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1077940 AT1G04140.1 56.156 796 289 10 1 771 23 783 0.0 817
Msa1077940 AT1G04140.2 56.156 796 289 10 1 771 23 783 0.0 817
Msa1077940 AT5G43930.2 57.831 415 137 9 355 761 341 725 1.97e-142 436
Msa1077940 AT5G43930.2 62.057 282 76 4 2 261 27 299 1.22e-108 348
Msa1077940 AT5G43930.3 57.831 415 137 9 355 761 341 725 1.97e-142 436
Msa1077940 AT5G43930.3 62.057 282 76 4 2 261 27 299 1.22e-108 348
Msa1077940 AT5G43930.1 57.831 415 137 9 355 761 341 725 1.97e-142 436
Msa1077940 AT5G43930.1 62.057 282 76 4 2 261 27 299 1.22e-108 348
Msa1077940 AT5G43930.4 57.831 415 137 9 355 761 367 751 3.16e-142 436
Msa1077940 AT5G43930.4 56.818 308 76 6 2 261 27 325 2.23e-101 330
Msa1077940 AT3G49660.1 35.780 109 63 4 72 176 77 182 1.45e-13 72.8

Find 246 sgRNAs with CRISPR-Local

Find 432 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAGGAGGGGTGGGAGTAAA+AGG 0.152243 7_2:+76740215 None:intergenic
ACCGATGCAAGTTCTCTTAA+TGG 0.210278 7_2:-76743555 Msa1077940:CDS
ATGATCTTATAACGTAAATT+TGG 0.230467 7_2:-76740060 Msa1077940:three_prime_UTR
TGGATCAAGAAGTTCGATTA+TGG 0.243621 7_2:-76744636 Msa1077940:CDS
TTTCAGATATGGAACTTGTT+AGG 0.251727 7_2:-76741868 Msa1077940:CDS
CGTTGCTTAAAGGTGTTAAT+TGG 0.263040 7_2:-76744886 Msa1077940:CDS
TTAGAATATTCTTTAATTTC+AGG 0.268266 7_2:+76745931 None:intergenic
CTTAAAAGCATTGTCATTGA+TGG 0.279015 7_2:-76742076 Msa1077940:CDS
AATAGAAGCAGCAAGATTTC+CGG 0.280600 7_2:+76743173 None:intergenic
TCATTGTCTGACTTCAATTC+AGG 0.291181 7_2:-76742511 Msa1077940:intron
TGAAACTGGACGTTGCTTAA+AGG 0.314072 7_2:-76744896 Msa1077940:CDS
AATTAAAGAATATTCTAATA+TGG 0.322018 7_2:-76745926 Msa1077940:five_prime_UTR
CCTCTCCGTGTTCGATTTCA+AGG 0.326541 7_2:+76745851 None:intergenic
TTACCTGCTGTTAGAATTAC+CGG 0.333961 7_2:+76745649 None:intergenic
TTCTCTAATGGAATGGGAAT+TGG 0.338125 7_2:-76743654 Msa1077940:CDS
TCGAATCAGAGAGAGTAAAT+AGG 0.340608 7_2:+76745774 None:intergenic
GTGCATACTGCTTTCTCTAA+TGG 0.347834 7_2:-76743666 Msa1077940:CDS
TGTTTAAATACCACGACAAT+AGG 0.349499 7_2:+76745220 None:intergenic
AAGATAATCGACTGTGAAAC+TGG 0.350714 7_2:-76744910 Msa1077940:CDS
TGCCTTGTACCGTGAAGTTA+AGG 0.352683 7_2:-76743056 Msa1077940:CDS
GTCAGCATTTAGTGGGGAAC+AGG 0.355958 7_2:+76743008 None:intergenic
ACCTCGGCCGTTAAAAGATA+TGG 0.356344 7_2:+76744158 None:intergenic
TGGGTTGGTGCTTGCGTCTC+GGG 0.360655 7_2:-76742547 Msa1077940:CDS
GCTAGTCATGACGCTGGTTC+AGG 0.361696 7_2:-76743828 Msa1077940:CDS
AACGGCAATGATTTCCCCTT+TGG 0.368185 7_2:+76744415 None:intergenic
ATAACTTGGTGTGCTGATAT+TGG 0.368312 7_2:+76742714 None:intergenic
GAAAGGAAGTCGCCCACTAA+TGG 0.369183 7_2:+76740182 None:intergenic
GGTATATAGAGTTTCAGATA+TGG 0.377588 7_2:-76741879 Msa1077940:CDS
CTTCTGTAAGATCAGGTTTA+CGG 0.380768 7_2:-76743233 Msa1077940:CDS
TTGTTGCCTGTGCTCAGCCC+TGG 0.380944 7_2:+76740353 None:intergenic
GTTTGCACTTTGCAGTGAAA+TGG 0.384877 7_2:-76742871 Msa1077940:intron
GGATCAAGAAGTTCGATTAT+GGG 0.386752 7_2:-76744635 Msa1077940:CDS
GAAATCATTGCCGTTGCATC+AGG 0.388142 7_2:-76744407 Msa1077940:CDS
ACCTATATATACAGTATTAG+AGG 0.394703 7_2:-76742041 Msa1077940:intron
TTGACTTCCTTCAGCCGGTC+TGG 0.395921 7_2:+76743590 None:intergenic
CCACCCAAGGCGTCCTCATA+TGG 0.404101 7_2:+76744863 None:intergenic
ACCTGATCTTACAGAAGATC+CGG 0.404650 7_2:+76743239 None:intergenic
GCATGAGGAAAGAGGAGGGG+TGG 0.412087 7_2:+76740205 None:intergenic
TTGGGTTGGTGCTTGCGTCT+CGG 0.413309 7_2:-76742548 Msa1077940:CDS
AGATTTCCGGATTCAGATAC+AGG 0.416922 7_2:+76743186 None:intergenic
TAGAATATTCTTTAATTTCA+GGG 0.418047 7_2:+76745932 None:intergenic
TCTTTCCTCATGCCCATTAG+TGG 0.423807 7_2:-76740195 Msa1077940:three_prime_UTR
TTCAGATATGGAACTTGTTA+GGG 0.425236 7_2:-76741867 Msa1077940:CDS
CTCCCACTAGCAAGTATTTG+TGG 0.430838 7_2:+76744661 None:intergenic
ATCATCCATCCTTGTAGAAA+AGG 0.437053 7_2:+76743426 None:intergenic
TCTAGACAAACCGCAAATCA+TGG 0.440551 7_2:-76743516 Msa1077940:CDS
AGGTGTTAATTGGCCATATG+AGG 0.441688 7_2:-76744876 Msa1077940:CDS
GAGCACAGGCAACAAAGAAC+TGG 0.443845 7_2:-76740345 Msa1077940:three_prime_UTR
CCCTTTGGCATGAAAAGCAA+TGG 0.446896 7_2:+76744430 None:intergenic
TCTCTTAATGGTATGTTACA+TGG 0.449131 7_2:-76743543 Msa1077940:CDS
ACCTCTAATACTGTATATAT+AGG 0.452218 7_2:+76742040 None:intergenic
CCCGGATCTTCTGTAAGATC+AGG 0.454736 7_2:-76743240 Msa1077940:CDS
AAAGGAAGTCGCCCACTAAT+GGG 0.455839 7_2:+76740183 None:intergenic
TGGATGAACCCCATGATTTG+CGG 0.456018 7_2:+76743506 None:intergenic
CTGTGTTGACTTCCTTCAGC+CGG 0.460994 7_2:+76743585 None:intergenic
ATGCCATCTTCTGCAATGTC+TGG 0.461031 7_2:-76743276 Msa1077940:CDS
ATATCGTGCAGCTGTACATA+TGG 0.461205 7_2:-76744277 Msa1077940:intron
CCAGGATCAGCTTCTATATG+AGG 0.462050 7_2:+76742792 None:intergenic
GAGGAGGGGTGGGAGTAAAA+GGG 0.464075 7_2:+76740216 None:intergenic
TCCATAAACTAGCCCGCCCC+CGG 0.464616 7_2:+76741793 None:intergenic
AAGAAAGGCAATGACACATT+AGG 0.465701 7_2:+76743900 None:intergenic
CATGAGGAAAGAGGAGGGGT+GGG 0.467715 7_2:+76740206 None:intergenic
CTCGACTCATCAACAGAATA+CGG 0.468779 7_2:+76743867 None:intergenic
CCTCATATAGAAGCTGATCC+TGG 0.469762 7_2:-76742792 Msa1077940:CDS
TACTGCTTTCTCTAATGGAA+TGG 0.472180 7_2:-76743661 Msa1077940:CDS
TACCTCATGCCGTCCTCTGC+AGG 0.473670 7_2:-76742969 Msa1077940:intron
GGATTCGACTCATGATGGTT+TGG 0.474467 7_2:+76743124 None:intergenic
AATACTTGCTAGTGGGAGCT+TGG 0.475100 7_2:-76744656 Msa1077940:CDS
CCCGTGTGAGGTAGCATTGA+GGG 0.475913 7_2:+76743381 None:intergenic
TGAAAAGCAATGGATGCAAT+TGG 0.476696 7_2:+76744440 None:intergenic
GATGGTGCTCACCCGGTGAA+TGG 0.478651 7_2:-76741654 Msa1077940:CDS
CCCCTCAATGCTACCTCACA+CGG 0.479076 7_2:-76743382 Msa1077940:CDS
ACTGCTTTCTCTAATGGAAT+GGG 0.479934 7_2:-76743660 Msa1077940:CDS
ACCCTTAACTTCACGGTACA+AGG 0.480079 7_2:+76743054 None:intergenic
GAAAATGATCCTTAGGGTTG+AGG 0.480101 7_2:-76745142 Msa1077940:intron
ATACCAGACTCTTGATGTAC+TGG 0.480973 7_2:+76742759 None:intergenic
CGGACACCTGTATCTGAATC+CGG 0.482179 7_2:-76743192 Msa1077940:CDS
TGTACTGGAGTTTGTAATCC+AGG 0.482691 7_2:+76742774 None:intergenic
TTTGCACTTTGCAGTGAAAT+GGG 0.485735 7_2:-76742870 Msa1077940:intron
CTGCCAGACATTGCAGAAGA+TGG 0.486488 7_2:+76743273 None:intergenic
ACAGATTAGTTCTAGTGTAA+TGG 0.489225 7_2:-76743334 Msa1077940:CDS
TACCTTGTGGCCTGATGCAA+CGG 0.492040 7_2:+76744397 None:intergenic
CAGACGTTGCGAGTTCTGAC+TGG 0.492854 7_2:+76743103 None:intergenic
ACCTTCACCGTCGTCTCGCT+AGG 0.494262 7_2:-76745882 Msa1077940:five_prime_UTR
AAAGACAAGGCGATCTCTAC+GGG 0.495978 7_2:-76744207 Msa1077940:CDS
TGCCTTACGTTGCCTCCTCA+AGG 0.498284 7_2:+76742670 None:intergenic
TACGGAGGCACGAGGAAGAA+AGG 0.502687 7_2:+76743885 None:intergenic
CTTAGGATCCTCCACTATGA+TGG 0.508020 7_2:-76741672 Msa1077940:CDS
CTTCAAGAGACCCAAGTGGA+TGG 0.509071 7_2:-76743455 Msa1077940:CDS
TGGCCATATGAGGACGCCTT+GGG 0.511608 7_2:-76744866 Msa1077940:CDS
GTCTCCCATGGATACAGTCT+TGG 0.511829 7_2:-76743727 Msa1077940:CDS
ATGACAGAGGCAACGTCCAT+TGG 0.511917 7_2:-76744002 Msa1077940:CDS
ATGTCTTTAATTTGCTTGCA+CGG 0.513223 7_2:-76745293 Msa1077940:CDS
CTTGGTCCAGTCCCATTCAC+CGG 0.513341 7_2:+76741642 None:intergenic
CTTGTTAAACAGATTTGGGT+TGG 0.513751 7_2:-76742562 Msa1077940:intron
GATTTCAAGCTTACCACCCA+AGG 0.513791 7_2:+76744850 None:intergenic
GATAATGTGAAGCAGATCAC+TGG 0.513915 7_2:+76740724 None:intergenic
ATCTACCGCATGGTGAAAAG+TGG 0.515762 7_2:+76742844 None:intergenic
CTAGACAAACCGCAAATCAT+GGG 0.517421 7_2:-76743515 Msa1077940:CDS
CCACTATGATGGTGCTCACC+CGG 0.519861 7_2:-76741661 Msa1077940:CDS
ATGGTGCTCACCCGGTGAAT+GGG 0.521215 7_2:-76741653 Msa1077940:CDS
CAACCTCACAATGGACGGTA+TGG 0.524573 7_2:-76743625 Msa1077940:CDS
TGACTGGATTCGACTCATGA+TGG 0.525010 7_2:+76743119 None:intergenic
GCTCACCCGGTGAATGGGAC+TGG 0.525493 7_2:-76741648 Msa1077940:CDS
CTTGCCTATGGTCGACGTCA+TGG 0.525700 7_2:-76742106 Msa1077940:CDS
ACTCCAGTACATCAAGAGTC+TGG 0.526460 7_2:-76742762 Msa1077940:CDS
AAAAGATATGGCGCAGCATG+AGG 0.527214 7_2:+76744170 None:intergenic
GGATGAAATTGACCATCCTC+TGG 0.527771 7_2:+76743486 None:intergenic
AAAGGTAATTCCCATCCACT+TGG 0.528862 7_2:+76743444 None:intergenic
TTCAAGAGACCCAAGTGGAT+GGG 0.529481 7_2:-76743454 Msa1077940:CDS
AATTGTAGGAAGGAAAGCTT+AGG 0.529620 7_2:-76741689 Msa1077940:intron
AATCTCCAAGACTGTATCCA+TGG 0.530387 7_2:+76743722 None:intergenic
TAAAGACAAGGCGATCTCTA+CGG 0.531041 7_2:-76744208 Msa1077940:CDS
CTTTCCTCATGCCCATTAGT+GGG 0.532289 7_2:-76740194 Msa1077940:three_prime_UTR
GACATCTGTCAGCATTTAGT+GGG 0.532977 7_2:+76743001 None:intergenic
GTCTCCTCAGGAAAGTAACT+TGG 0.533065 7_2:+76741624 None:intergenic
TAAGAGAACTTGCATCGGTA+GGG 0.534269 7_2:+76743559 None:intergenic
TCCGCAGCTCATACATAACT+TGG 0.534468 7_2:+76742700 None:intergenic
GAGCACATACTCCTTGCCTA+TGG 0.537284 7_2:-76742118 Msa1077940:CDS
GGGTCTCTTGAAGAAACAAA+CGG 0.538257 7_2:+76743465 None:intergenic
AGACCACACCCTTAACTTCA+CGG 0.538563 7_2:+76743047 None:intergenic
TCTATTAATACCCCACATGA+TGG 0.539286 7_2:-76743156 Msa1077940:CDS
CGACATCTGTCAGCATTTAG+TGG 0.540985 7_2:+76743000 None:intergenic
TTAAGAGAACTTGCATCGGT+AGG 0.541148 7_2:+76743558 None:intergenic
TTGGCCATATGAGGACGCCT+TGG 0.541707 7_2:-76744867 Msa1077940:CDS
GCCTTGTACCGTGAAGTTAA+GGG 0.548350 7_2:-76743055 Msa1077940:CDS
AGGAGTATGTGCTCAGATGT+AGG 0.551124 7_2:+76742127 None:intergenic
CATTATCTTTACTACTCACG+TGG 0.551299 7_2:-76740708 Msa1077940:intron
TGCCGTGGCTCAGTTTCAAG+CGG 0.552360 7_2:-76743784 Msa1077940:CDS
AGAATATTCTTTAATTTCAG+GGG 0.554734 7_2:+76745933 None:intergenic
ACCTAGCGAGACGACGGTGA+AGG 0.558637 7_2:+76745881 None:intergenic
TGGATGTCAGATCCATCATG+TGG 0.558671 7_2:+76743144 None:intergenic
ATTATGAGATTTCTCTGATG+AGG 0.558706 7_2:+76740115 None:intergenic
GCCTTACGTTGCCTCCTCAA+GGG 0.559128 7_2:+76742671 None:intergenic
TCATATCCAGGGCTGAGCAC+AGG 0.559687 7_2:-76740359 Msa1077940:three_prime_UTR
TTTCCTGAGGAGACCATCGT+TGG 0.560017 7_2:-76741615 Msa1077940:CDS
GTACCGTGAAGTTAAGGGTG+TGG 0.561704 7_2:-76743050 Msa1077940:CDS
ACTCCAACGATGGTCTCCTC+AGG 0.564018 7_2:+76741612 None:intergenic
TTTCTACAAGGATGGATGAT+GGG 0.564871 7_2:-76743423 Msa1077940:CDS
ACTAATGGGCATGAGGAAAG+AGG 0.571847 7_2:+76740197 None:intergenic
TGAACATGTTACACGTGGAA+AGG 0.575971 7_2:+76740165 None:intergenic
CGCAACGTCTGTGGCTGCAG+CGG 0.576598 7_2:-76743091 Msa1077940:CDS
TAACATGTTCAGTAGTTACA+AGG 0.576735 7_2:-76740153 Msa1077940:three_prime_UTR
GGTTCAAACATGATTAGAGA+TGG 0.576886 7_2:-76740750 Msa1077940:three_prime_UTR
ATCGGCAACCTCACAATGGA+CGG 0.577256 7_2:-76743630 Msa1077940:CDS
GTCAGAACTCGCAACGTCTG+TGG 0.578097 7_2:-76743100 Msa1077940:CDS
GCAGCGGCGTTTAGTCCAGA+TGG 0.579480 7_2:-76745054 Msa1077940:CDS
ATGGGCATGAGGAAAGAGGA+GGG 0.581387 7_2:+76740201 None:intergenic
GTTCTTTAGTACCTGCGCCA+AGG 0.582270 7_2:-76745086 Msa1077940:CDS
AGAAAGTAAATATACAGAAG+TGG 0.582698 7_2:+76744581 None:intergenic
AGAACCATGACGTCGACCAT+AGG 0.583821 7_2:+76742102 None:intergenic
ATATGGCACTACGACAAGAA+AGG 0.584515 7_2:-76744260 Msa1077940:CDS
GATGAAACCAGACCGGCTGA+AGG 0.588340 7_2:-76743597 Msa1077940:CDS
AGGTACTAAAGAACAATACT+TGG 0.589341 7_2:+76745095 None:intergenic
CATCGGAATCGTGATCGCAC+CGG 0.590292 7_2:-76745668 Msa1077940:CDS
ACCCGTGTGAGGTAGCATTG+AGG 0.592212 7_2:+76743380 None:intergenic
TGCCGTTGCATCAGGCCACA+AGG 0.593080 7_2:-76744399 Msa1077940:intron
TTGGAGTCAGTCAGTGAGCA+AGG 0.593135 7_2:-76741596 Msa1077940:intron
GCAAGTATTTGTGGATGCAA+TGG 0.594535 7_2:+76744670 None:intergenic
CCTGATCTTACAGAAGATCC+GGG 0.595791 7_2:+76743240 None:intergenic
GGACGTTGCCTCTGTCATTG+AGG 0.596417 7_2:+76744007 None:intergenic
GCATTGAGGGGAGACCAGCT+TGG 0.596774 7_2:+76743394 None:intergenic
CACATATGACGAGAATTCAT+CGG 0.599243 7_2:-76745685 Msa1077940:exon
ATGATGGGTCAAAGCCAAGC+TGG 0.599441 7_2:-76743408 Msa1077940:CDS
TTGACCTCATCTTCAGCACT+CGG 0.599552 7_2:+76741839 None:intergenic
GCTGATATTGGATGCCGAGT+TGG 0.600979 7_2:+76742726 None:intergenic
AATGGAATGGGAATTGGCAT+CGG 0.601027 7_2:-76743648 Msa1077940:CDS
ATTAGAGAAAGCAGTATGCA+CGG 0.601449 7_2:+76743668 None:intergenic
AGGATATTGTAAGTAACCAA+TGG 0.603398 7_2:+76743986 None:intergenic
ATCTCCAAGACTGTATCCAT+GGG 0.604350 7_2:+76743723 None:intergenic
GCCGCTGCAATAGTAGACCT+TGG 0.604711 7_2:+76745069 None:intergenic
GTACCAGCTTGAGAGTTAGT+CGG 0.607254 7_2:+76743699 None:intergenic
GTATTTGTGGATGCAATGGA+TGG 0.608429 7_2:+76744674 None:intergenic
GCACCGGTAATTCTAACAGC+AGG 0.609379 7_2:-76745652 Msa1077940:intron
TGCTACATCAGCATTAGAAG+TGG 0.609631 7_2:+76743299 None:intergenic
TTGGTCCAGTCCCATTCACC+GGG 0.609927 7_2:+76741643 None:intergenic
CTTCACGGTACAAGGCAGCT+CGG 0.611116 7_2:+76743062 None:intergenic
TGATACTATAGTGTCTCCCA+TGG 0.611348 7_2:-76743739 Msa1077940:CDS
TCACTGACTGACTCCAACGA+TGG 0.611704 7_2:+76741602 None:intergenic
CCATATGAGGACGCCTTGGG+TGG 0.612145 7_2:-76744863 Msa1077940:intron
CATGGGGTTCATCCAGAGGA+TGG 0.613299 7_2:-76743498 Msa1077940:CDS
TCAGCATTTAGTGGGGAACA+GGG 0.616022 7_2:+76743009 None:intergenic
TTAGAGAAAGCAGTATGCAC+GGG 0.618198 7_2:+76743669 None:intergenic
CATCCACAAATACTTGCTAG+TGG 0.619566 7_2:-76744664 Msa1077940:CDS
GCTACATCAGCATTAGAAGT+GGG 0.622520 7_2:+76743300 None:intergenic
ACCATTAAGAGAACTTGCAT+CGG 0.624258 7_2:+76743554 None:intergenic
GACAAAGTAACATGTTCTGT+AGG 0.624906 7_2:+76743933 None:intergenic
AAAGATATGGCGCAGCATGA+GGG 0.625734 7_2:+76744171 None:intergenic
ATTCCGACTAACTCTCAAGC+TGG 0.626131 7_2:-76743702 Msa1077940:CDS
CTGCACCTTGAAATCGAACA+CGG 0.626155 7_2:-76745856 Msa1077940:five_prime_UTR
AAGGTAATTCCCATCCACTT+GGG 0.626424 7_2:+76743445 None:intergenic
GCTTCCGAGTGCTGAAGATG+AGG 0.627162 7_2:-76741843 Msa1077940:CDS
TCTCCATACCGTCCATTGTG+AGG 0.627723 7_2:+76743622 None:intergenic
TCTACCGCATGGTGAAAAGT+GGG 0.629253 7_2:+76742845 None:intergenic
AAATCATGGGGTTCATCCAG+AGG 0.629465 7_2:-76743502 Msa1077940:CDS
ATCCACAAATACTTGCTAGT+GGG 0.630308 7_2:-76744663 Msa1077940:CDS
AACTTTGTACAGATCATCAG+CGG 0.631432 7_2:+76740395 None:intergenic
ACAAATTGAGTCTTCTGCCG+TGG 0.631489 7_2:-76743799 Msa1077940:CDS
GGATGTCAGATCCATCATGT+GGG 0.633368 7_2:+76743145 None:intergenic
AACATGTTCAGTAGTTACAA+GGG 0.635795 7_2:-76740152 Msa1077940:three_prime_UTR
CCCTCAATGCTACCTCACAC+GGG 0.637598 7_2:-76743381 Msa1077940:CDS
TGGACCAAGTTACTTTCCTG+AGG 0.638172 7_2:-76741628 Msa1077940:CDS
GTCGCCCACTAATGGGCATG+AGG 0.639948 7_2:+76740190 None:intergenic
AGGAAGCATACATGCAACAC+AGG 0.643675 7_2:+76742812 None:intergenic
TACCTGCAGAGGACGGCATG+AGG 0.644382 7_2:+76742967 None:intergenic
CAAAGCGTGGCCTATTGTCG+TGG 0.644817 7_2:-76745230 Msa1077940:intron
ACTTCAGAAGGTACCTGCAG+AGG 0.645206 7_2:+76742956 None:intergenic
TGGCATCGGCAACCTCACAA+TGG 0.648272 7_2:-76743634 Msa1077940:CDS
AACGAGAAGAAACAGAAGAG+AGG 0.651443 7_2:+76745750 None:intergenic
CATGACGTCGACCATAGGCA+AGG 0.651625 7_2:+76742107 None:intergenic
TCTGGCAGCATTAACATACC+CGG 0.651832 7_2:-76743258 Msa1077940:CDS
GTATTGCAACATCACCAACT+CGG 0.653630 7_2:-76742740 Msa1077940:CDS
GCAATAGTAGACCTTGGCGC+AGG 0.654426 7_2:+76745075 None:intergenic
GTCCGCTTGAAACTGAGCCA+CGG 0.655549 7_2:+76743782 None:intergenic
GCGGATATATTCCCTTGAGG+AGG 0.655726 7_2:-76742682 Msa1077940:CDS
ACATGTTCAGTAGTTACAAG+GGG 0.657289 7_2:-76740151 Msa1077940:three_prime_UTR
ATTATGGGATGCTAACACAT+CGG 0.657460 7_2:-76744620 Msa1077940:CDS
CAGAAGGTACCTGCAGAGGA+CGG 0.657906 7_2:+76742960 None:intergenic
ATTACACTAGAACTAATCTG+TGG 0.661265 7_2:+76743336 None:intergenic
AAAGGCAATGACACATTAGG+TGG 0.662890 7_2:+76743903 None:intergenic
GGAGACTGATGAAACCAGAC+CGG 0.663373 7_2:-76743604 Msa1077940:CDS
AATGGGCATGAGGAAAGAGG+AGG 0.663679 7_2:+76740200 None:intergenic
GCCAAGGTCTACTATTGCAG+CGG 0.665562 7_2:-76745070 Msa1077940:CDS
CGGGCTAGTTTATGGAACAA+AGG 0.666139 7_2:-76741786 Msa1077940:intron
TTCAGATTCCTCAATGACAG+AGG 0.666751 7_2:-76744015 Msa1077940:CDS
CAACAGAATACGGAGGCACG+AGG 0.668384 7_2:+76743877 None:intergenic
CCTTGAAATCGAACACGGAG+AGG 0.669740 7_2:-76745851 Msa1077940:five_prime_UTR
GTATAATTAACACAAGTCGT+AGG 0.672001 7_2:+76745903 None:intergenic
GCAGAGACCTAGCGAGACGA+CGG 0.673343 7_2:+76745875 None:intergenic
GGTGAGCACCATCATAGTGG+AGG 0.674931 7_2:+76741664 None:intergenic
TCACGACTAACACCCGTGTG+AGG 0.675774 7_2:+76743369 None:intergenic
TAGACAAACCGCAAATCATG+GGG 0.676301 7_2:-76743514 Msa1077940:CDS
ACTACTGAACATGTTACACG+TGG 0.679467 7_2:+76740160 None:intergenic
AGTCGATTATCTTTACTGTG+TGG 0.679994 7_2:+76744920 None:intergenic
CAGCATGCTAGTCATGACGC+TGG 0.681322 7_2:-76743834 Msa1077940:CDS
ACCAAGTTATGTATGAGCTG+CGG 0.681787 7_2:-76742701 Msa1077940:CDS
GTTTCTTCAAGAGACCCAAG+TGG 0.684840 7_2:-76743459 Msa1077940:CDS
GATGTCAGATCCATCATGTG+GGG 0.690040 7_2:+76743146 None:intergenic
GCTGCGGATATATTCCCTTG+AGG 0.702528 7_2:-76742685 Msa1077940:CDS
GTAGCAAGAGATGCAAAGCG+TGG 0.707117 7_2:-76745243 Msa1077940:CDS
TGCTGAAGATGAGGTCAATG+TGG 0.716427 7_2:-76741834 Msa1077940:CDS
TGGGCATGAGGAAAGAGGAG+GGG 0.726777 7_2:+76740202 None:intergenic
ACATCTGTCAGCATTTAGTG+GGG 0.739342 7_2:+76743002 None:intergenic
GGGTTGAGGCTGATTCACTG+CGG 0.741601 7_2:-76745128 Msa1077940:CDS
CATGTTCAGTAGTTACAAGG+GGG 0.743174 7_2:-76740150 Msa1077940:three_prime_UTR
GACTCATCAACAGAATACGG+AGG 0.745008 7_2:+76743870 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTAAAGAATATTCTAATA+TGG - chr7_2:76740066-76740085 Msa1077940:three_prime_UTR 10.0%
!!! ACATGAAATTAATATTTTTT+AGG - chr7_2:76744039-76744058 Msa1077940:intron 10.0%
!!! TAGAATATTCTTTAATTTCA+GGG + chr7_2:76740063-76740082 None:intergenic 15.0%
!!! TTAGAATATTCTTTAATTTC+AGG + chr7_2:76740064-76740083 None:intergenic 15.0%
!! TTCAATTTAAACTAATAATG+AGG + chr7_2:76741007-76741026 None:intergenic 15.0%
!! TTTAGCACATAAATTAAAAT+TGG + chr7_2:76741281-76741300 None:intergenic 15.0%
!! ACAAAAAAAATTAGTAATAG+TGG + chr7_2:76741467-76741486 None:intergenic 15.0%
!! ATTATGTTTAAACTTAACAA+AGG + chr7_2:76743783-76743802 None:intergenic 15.0%
!! TTTCAAAAAATAATAATACG+AGG + chr7_2:76744740-76744759 None:intergenic 15.0%
!!! CGTATTATTATTTTTTGAAA+TGG - chr7_2:76744740-76744759 Msa1077940:intron 15.0%
!! AAAATAAAAAACAAAGACTA+TGG + chr7_2:76744783-76744802 None:intergenic 15.0%
!!! AGAATATTCTTTAATTTCAG+GGG + chr7_2:76740062-76740081 None:intergenic 20.0%
!! CAAAAAAAACTAATCACAAA+GGG + chr7_2:76741032-76741051 None:intergenic 20.0%
!! ACAAAAAAAACTAATCACAA+AGG + chr7_2:76741033-76741052 None:intergenic 20.0%
!! AATAGATGCATAATAAATTC+AGG + chr7_2:76741178-76741197 None:intergenic 20.0%
!!! TTGTTTTTCTTGTATTGATT+GGG - chr7_2:76741486-76741505 Msa1077940:intron 20.0%
!! TTTCTGTTTGATGAATTTAT+TGG - chr7_2:76741510-76741529 Msa1077940:intron 20.0%
!! CATTAAAGATGAAAAAACAT+GGG + chr7_2:76741640-76741659 None:intergenic 20.0%
!! TCATTAAAGATGAAAAAACA+TGG + chr7_2:76741641-76741660 None:intergenic 20.0%
!! TTGTCTTTAACACAAAAATT+GGG + chr7_2:76741773-76741792 None:intergenic 20.0%
!! AAAAAGTCAATCATGAAATA+AGG + chr7_2:76743603-76743622 None:intergenic 20.0%
!! CAATGCACATAATAAATAAA+AGG + chr7_2:76743655-76743674 None:intergenic 20.0%
!!! ACTGCATTTTTAATTCATTA+TGG + chr7_2:76743687-76743706 None:intergenic 20.0%
!! AAATCATACAAAACTACAAT+AGG + chr7_2:76743993-76744012 None:intergenic 20.0%
!!! TTAATCTCAATTTTATGTCT+TGG - chr7_2:76744072-76744091 Msa1077940:intron 20.0%
!!! AGGTTATATATTGATTCTTT+TGG - chr7_2:76744416-76744435 Msa1077940:CDS 20.0%
!!! GGTTATATATTGATTCTTTT+GGG - chr7_2:76744417-76744436 Msa1077940:CDS 20.0%
!!! GTTATATATTGATTCTTTTG+GGG - chr7_2:76744418-76744437 Msa1077940:CDS 20.0%
!! TAATTAGACAACTATAAAAG+TGG - chr7_2:76744448-76744467 Msa1077940:CDS 20.0%
!! TACTAAAATTGATCTCAAAT+GGG - chr7_2:76744512-76744531 Msa1077940:intron 20.0%
!! AAGATAAACCAAATATTACA+GGG + chr7_2:76744838-76744857 None:intergenic 20.0%
!! AATACAACAAAACTATCAAA+AGG + chr7_2:76744927-76744946 None:intergenic 20.0%
!! CCAATTTCTTAAATTTATCT+TGG + chr7_2:76745032-76745051 None:intergenic 20.0%
!! CCAAGATAAATTTAAGAAAT+TGG - chr7_2:76745029-76745048 Msa1077940:intron 20.0%
!! ATCATATATGAGTGAATTTA+AGG - chr7_2:76745113-76745132 Msa1077940:CDS 20.0%
!!! ATGTATTTTGTTCAAAATGT+CGG - chr7_2:76745176-76745195 Msa1077940:intron 20.0%
!! GAATATCAATATAAACCTTA+TGG + chr7_2:76745426-76745445 None:intergenic 20.0%
!! ATGATCTTATAACGTAAATT+TGG - chr7_2:76745932-76745951 Msa1077940:five_prime_UTR 20.0%
! TACAATCCATATAAAAACTG+AGG + chr7_2:76740619-76740638 None:intergenic 25.0%
!! ATCTTTGAAAATGATCCTTA+GGG - chr7_2:76740844-76740863 Msa1077940:intron 25.0%
!!! TTTTTGTTTGTTATGTGTAG+TGG - chr7_2:76741046-76741065 Msa1077940:intron 25.0%
! AGAAAGTAAATATACAGAAG+TGG + chr7_2:76741414-76741433 None:intergenic 25.0%
! AAAATTAGTAATAGTGGCAA+AGG + chr7_2:76741461-76741480 None:intergenic 25.0%
!!! GTTGTTTTTCTTGTATTGAT+TGG - chr7_2:76741485-76741504 Msa1077940:intron 25.0%
! TGTCTTTAACACAAAAATTG+GGG + chr7_2:76741772-76741791 None:intergenic 25.0%
! CTTGTCTTTAACACAAAAAT+TGG + chr7_2:76741774-76741793 None:intergenic 25.0%
!! CAATTTTTGTGTTAAAGACA+AGG - chr7_2:76741772-76741791 Msa1077940:intron 25.0%
! ATTAACATAGTGAATAGCAT+GGG + chr7_2:76741891-76741910 None:intergenic 25.0%
! AATTAACATAGTGAATAGCA+TGG + chr7_2:76741892-76741911 None:intergenic 25.0%
!! TAAGCATTTACTATTTCTTC+TGG - chr7_2:76743363-76743382 Msa1077940:CDS 25.0%
!!! TTACTATTTCTTCTGGTTTA+AGG - chr7_2:76743370-76743389 Msa1077940:CDS 25.0%
!! GATACTTGTTAAACAGATTT+GGG - chr7_2:76743426-76743445 Msa1077940:CDS 25.0%
! TAACAACCTACAATAACAAA+GGG + chr7_2:76743713-76743732 None:intergenic 25.0%
! TTAACAACCTACAATAACAA+AGG + chr7_2:76743714-76743733 None:intergenic 25.0%
!! TTGTAAAGCAATTTTGTTCA+TGG - chr7_2:76743803-76743822 Msa1077940:CDS 25.0%
! ACCTATATATACAGTATTAG+AGG - chr7_2:76743951-76743970 Msa1077940:CDS 25.0%
! ACCTCTAATACTGTATATAT+AGG + chr7_2:76743955-76743974 None:intergenic 25.0%
! TTAACAATTAAGCAATGCAA+GGG + chr7_2:76744271-76744290 None:intergenic 25.0%
!! AACTTTTTGCTTGTAATTGT+AGG - chr7_2:76744289-76744308 Msa1077940:intron 25.0%
! GTACTAAAATTGATCTCAAA+TGG - chr7_2:76744511-76744530 Msa1077940:intron 25.0%
! ACTAAAATTGATCTCAAATG+GGG - chr7_2:76744513-76744532 Msa1077940:intron 25.0%
! TTAATGTTAGACTATGATGA+TGG - chr7_2:76744537-76744556 Msa1077940:intron 25.0%
! AACAATTAAAACTCGTGTTA+AGG - chr7_2:76744599-76744618 Msa1077940:CDS 25.0%
!!! AGAAGCTTTGAAGTTTAAAA+AGG - chr7_2:76744629-76744648 Msa1077940:CDS 25.0%
!! TTTTGCAATTACAAGATGTT+TGG - chr7_2:76744667-76744686 Msa1077940:CDS 25.0%
! ACTATGGAAAAACAATTACA+GGG + chr7_2:76744767-76744786 None:intergenic 25.0%
! GAAGATAAACCAAATATTAC+AGG + chr7_2:76744839-76744858 None:intergenic 25.0%
!! TCAATTAGTTCTTTAATGCT+CGG - chr7_2:76744857-76744876 Msa1077940:intron 25.0%
! ATATATTACCGTGATTGATT+TGG - chr7_2:76744897-76744916 Msa1077940:CDS 25.0%
!! TATATTACCGTGATTGATTT+GGG - chr7_2:76744898-76744917 Msa1077940:CDS 25.0%
!! TGTATTTTGTTCAAAATGTC+GGG - chr7_2:76745177-76745196 Msa1077940:intron 25.0%
! AATTAGATGAAAACTTTGTG+AGG + chr7_2:76745219-76745238 None:intergenic 25.0%
!! CAAAGTTTTCATCTAATTGT+AGG - chr7_2:76745221-76745240 Msa1077940:intron 25.0%
!!! TATTTTTGCATCAAATGAAG+AGG - chr7_2:76745371-76745390 Msa1077940:intron 25.0%
!!! TTGACTTGGTTAAAAAATCA+AGG + chr7_2:76745454-76745473 None:intergenic 25.0%
! ATTTACTTAATTGGTTGACT+TGG + chr7_2:76745468-76745487 None:intergenic 25.0%
!!! GGTTTTTCGATTTACTTAAT+TGG + chr7_2:76745477-76745496 None:intergenic 25.0%
!!! AACTGCAAGTGATTTTAAAA+TGG - chr7_2:76745551-76745570 Msa1077940:intron 25.0%
!! AACACAAACATTTTTACAAC+AGG + chr7_2:76745756-76745775 None:intergenic 25.0%
GTATAATTAACACAAGTCGT+AGG + chr7_2:76740092-76740111 None:intergenic 30.0%
GAGAAATGATTAATCAGAGA+CGG + chr7_2:76740376-76740395 None:intergenic 30.0%
AATCATTTCTCTGTTTCCAT+CGG - chr7_2:76740385-76740404 Msa1077940:three_prime_UTR 30.0%
TGCATTTAGATCGAATCATT+TGG - chr7_2:76740415-76740434 Msa1077940:intron 30.0%
! AGTTTGCCTCAGTTTTTATA+TGG - chr7_2:76740610-76740629 Msa1077940:intron 30.0%
!! ATGTCTTTAATTTGCTTGCA+CGG - chr7_2:76740699-76740718 Msa1077940:intron 30.0%
TGTTTAAATACCACGACAAT+AGG + chr7_2:76740775-76740794 None:intergenic 30.0%
TCAGTCTATAAACGATATCT+AGG - chr7_2:76740798-76740817 Msa1077940:intron 30.0%
TTTCAAAGATGTTAGTCAAG+AGG + chr7_2:76740834-76740853 None:intergenic 30.0%
! CATCTTTGAAAATGATCCTT+AGG - chr7_2:76740843-76740862 Msa1077940:intron 30.0%
AGGTACTAAAGAACAATACT+TGG + chr7_2:76740900-76740919 None:intergenic 30.0%
ATTCCTTCTGTAAACAACAA+AGG + chr7_2:76741241-76741260 None:intergenic 30.0%
TTTATGTGCTAAATGACTAC+AGG - chr7_2:76741288-76741307 Msa1077940:intron 30.0%
TAAAGATGAAAAAACATGGG+AGG + chr7_2:76741637-76741656 None:intergenic 30.0%
TTCCAGAACACAATATAAGA+GGG + chr7_2:76741694-76741713 None:intergenic 30.0%
ATTCCAGAACACAATATAAG+AGG + chr7_2:76741695-76741714 None:intergenic 30.0%
AGGATATTGTAAGTAACCAA+TGG + chr7_2:76742009-76742028 None:intergenic 30.0%
TCTCTTAATGGTATGTTACA+TGG - chr7_2:76742449-76742468 Msa1077940:intron 30.0%
! AATTACCTTTTCTACAAGGA+TGG - chr7_2:76742561-76742580 Msa1077940:intron 30.0%
ATTACACTAGAACTAATCTG+TGG + chr7_2:76742659-76742678 None:intergenic 30.0%
!! ACAGATTAGTTCTAGTGTAA+TGG - chr7_2:76742658-76742677 Msa1077940:intron 30.0%
ATGAAAAACGTAACTTCAGA+AGG + chr7_2:76743051-76743070 None:intergenic 30.0%
! CGATACTTGTTAAACAGATT+TGG - chr7_2:76743425-76743444 Msa1077940:CDS 30.0%
TGAAGAAGAAAAAGAAGGTA+CGG + chr7_2:76743577-76743596 None:intergenic 30.0%
GGATATGAAGAAGAAAAAGA+AGG + chr7_2:76743582-76743601 None:intergenic 30.0%
ACGTATTTGTATCTTTGACT+TGG + chr7_2:76743631-76743650 None:intergenic 30.0%
!! CTTAAAAGCATTGTCATTGA+TGG - chr7_2:76743916-76743935 Msa1077940:CDS 30.0%
CATACAAAACTACAATAGGT+AGG + chr7_2:76743989-76744008 None:intergenic 30.0%
!! TGGAATTTGCTTTGTGTTTT+AGG - chr7_2:76744092-76744111 Msa1077940:intron 30.0%
GGTATATAGAGTTTCAGATA+TGG - chr7_2:76744113-76744132 Msa1077940:intron 30.0%
! TTTCAGATATGGAACTTGTT+AGG - chr7_2:76744124-76744143 Msa1077940:intron 30.0%
!! TTCAGATATGGAACTTGTTA+GGG - chr7_2:76744125-76744144 Msa1077940:intron 30.0%
! AACAAAGGTATGACTTTACT+GGG - chr7_2:76744221-76744240 Msa1077940:CDS 30.0%
GTTAACAATTAAGCAATGCA+AGG + chr7_2:76744272-76744291 None:intergenic 30.0%
! TTTTGCTTGTAATTGTAGGA+AGG - chr7_2:76744293-76744312 Msa1077940:intron 30.0%
ACAACTATAAAAGTGGTGTT+TGG - chr7_2:76744455-76744474 Msa1077940:intron 30.0%
!! TTGGTTTTCATTCTTTGCTA+TGG - chr7_2:76744686-76744705 Msa1077940:intron 30.0%
!! TGGTTTTCATTCTTTGCTAT+GGG - chr7_2:76744687-76744706 Msa1077940:intron 30.0%
GACTATGGAAAAACAATTAC+AGG + chr7_2:76744768-76744787 None:intergenic 30.0%
!! GTTTTAGTCCCTGTAATATT+TGG - chr7_2:76744827-76744846 Msa1077940:intron 30.0%
AGTGAATTTAAGGATCACAT+CGG - chr7_2:76745123-76745142 Msa1077940:CDS 30.0%
GTAGAAAAAGCAAGACATAA+AGG + chr7_2:76745332-76745351 None:intergenic 30.0%
TAACATGTTCAGTAGTTACA+AGG - chr7_2:76745839-76745858 Msa1077940:five_prime_UTR 30.0%
AACATGTTCAGTAGTTACAA+GGG - chr7_2:76745840-76745859 Msa1077940:five_prime_UTR 30.0%
ATTATGAGATTTCTCTGATG+AGG + chr7_2:76745880-76745899 None:intergenic 30.0%
TCGAATCAGAGAGAGTAAAT+AGG + chr7_2:76740221-76740240 None:intergenic 35.0%
CACATATGACGAGAATTCAT+CGG - chr7_2:76740307-76740326 Msa1077940:three_prime_UTR 35.0%
TTACCTGCTGTTAGAATTAC+CGG + chr7_2:76740346-76740365 None:intergenic 35.0%
CTAATTTGAGCTGATCCTAA+TGG + chr7_2:76740537-76740556 None:intergenic 35.0%
!! CTTGCTACATGTTTTGTTCT+CGG + chr7_2:76740737-76740756 None:intergenic 35.0%
AGTCGATTATCTTTACTGTG+TGG + chr7_2:76741075-76741094 None:intergenic 35.0%
AAGATAATCGACTGTGAAAC+TGG - chr7_2:76741082-76741101 Msa1077940:intron 35.0%
!! CGTTGCTTAAAGGTGTTAAT+TGG - chr7_2:76741106-76741125 Msa1077940:intron 35.0%
CATAATAAATTCAGGCAGAC+AGG + chr7_2:76741170-76741189 None:intergenic 35.0%
!! TTGCCTTTGTTGTTTACAGA+AGG - chr7_2:76741235-76741254 Msa1077940:intron 35.0%
! ATCCACAAATACTTGCTAGT+GGG - chr7_2:76741329-76741348 Msa1077940:intron 35.0%
TGGATCAAGAAGTTCGATTA+TGG - chr7_2:76741356-76741375 Msa1077940:intron 35.0%
GGATCAAGAAGTTCGATTAT+GGG - chr7_2:76741357-76741376 Msa1077940:intron 35.0%
ATTATGGGATGCTAACACAT+CGG - chr7_2:76741372-76741391 Msa1077940:intron 35.0%
TGAAAAGCAATGGATGCAAT+TGG + chr7_2:76741555-76741574 None:intergenic 35.0%
TCAGAAAAACTACTACCTTG+TGG + chr7_2:76741611-76741630 None:intergenic 35.0%
TACCCTCTTATATTGTGTTC+TGG - chr7_2:76741689-76741708 Msa1077940:intron 35.0%
TAACACAAAAATTGGGGAGT+AGG + chr7_2:76741766-76741785 None:intergenic 35.0%
AAACACAAGTTCATTCACCT+CGG + chr7_2:76741853-76741872 None:intergenic 35.0%
! GGTGAATGAACTTGTGTTTT+TGG - chr7_2:76741854-76741873 Msa1077940:CDS 35.0%
GACAAAGTAACATGTTCTGT+AGG + chr7_2:76742062-76742081 None:intergenic 35.0%
AAGAAAGGCAATGACACATT+AGG + chr7_2:76742095-76742114 None:intergenic 35.0%
ATTAGAGAAAGCAGTATGCA+CGG + chr7_2:76742327-76742346 None:intergenic 35.0%
TACTGCTTTCTCTAATGGAA+TGG - chr7_2:76742331-76742350 Msa1077940:intron 35.0%
ACTGCTTTCTCTAATGGAAT+GGG - chr7_2:76742332-76742351 Msa1077940:intron 35.0%
TTCTCTAATGGAATGGGAAT+TGG - chr7_2:76742338-76742357 Msa1077940:intron 35.0%
ACCATTAAGAGAACTTGCAT+CGG + chr7_2:76742441-76742460 None:intergenic 35.0%
! TGGGAATTACCTTTTCTACA+AGG - chr7_2:76742557-76742576 Msa1077940:intron 35.0%
ATCATCCATCCTTGTAGAAA+AGG + chr7_2:76742569-76742588 None:intergenic 35.0%
! TTTTCTACAAGGATGGATGA+TGG - chr7_2:76742568-76742587 Msa1077940:intron 35.0%
TTTCTACAAGGATGGATGAT+GGG - chr7_2:76742569-76742588 Msa1077940:intron 35.0%
CTTCTGTAAGATCAGGTTTA+CGG - chr7_2:76742759-76742778 Msa1077940:CDS 35.0%
AATAGAAGCAGCAAGATTTC+CGG + chr7_2:76742822-76742841 None:intergenic 35.0%
TCTATTAATACCCCACATGA+TGG - chr7_2:76742836-76742855 Msa1077940:CDS 35.0%
TTTGCACTTTGCAGTGAAAT+GGG - chr7_2:76743122-76743141 Msa1077940:CDS 35.0%
!! ATAACTTGGTGTGCTGATAT+TGG + chr7_2:76743281-76743300 None:intergenic 35.0%
CTTGTTAAACAGATTTGGGT+TGG - chr7_2:76743430-76743449 Msa1077940:CDS 35.0%
TCATTGTCTGACTTCAATTC+AGG - chr7_2:76743481-76743500 Msa1077940:CDS 35.0%
!! AGTGAACCCTTTGTTATTGT+AGG - chr7_2:76743704-76743723 Msa1077940:CDS 35.0%
! GAACAAAGGTATGACTTTAC+TGG - chr7_2:76744220-76744239 Msa1077940:CDS 35.0%
! ACAAAGGTATGACTTTACTG+GGG - chr7_2:76744222-76744241 Msa1077940:CDS 35.0%
AATTGTAGGAAGGAAAGCTT+AGG - chr7_2:76744303-76744322 Msa1077940:intron 35.0%
!! ATGTTAGACTATGATGATGG+TGG - chr7_2:76744540-76744559 Msa1077940:intron 35.0%
AAGGATTCCCAAATCAATCA+CGG + chr7_2:76744908-76744927 None:intergenic 35.0%
CAAAATACATACTCGCATGA+AGG + chr7_2:76745166-76745185 None:intergenic 35.0%
GGTTCAAACATGATTAGAGA+TGG - chr7_2:76745242-76745261 Msa1077940:CDS 35.0%
CATTATCTTTACTACTCACG+TGG - chr7_2:76745284-76745303 Msa1077940:CDS 35.0%
GAAAAAGCAAGACATAAAGG+AGG + chr7_2:76745329-76745348 None:intergenic 35.0%
!!! TGCTTTTTCTACACAAGTAG+TGG - chr7_2:76745340-76745359 Msa1077940:intron 35.0%
! TTTTGCATCAAATGAAGAGG+TGG - chr7_2:76745374-76745393 Msa1077940:intron 35.0%
TCAAGAAGTTGAGCTTTCAT+TGG + chr7_2:76745498-76745517 None:intergenic 35.0%
AATGAAAGCTCAACTTCTTG+AGG - chr7_2:76745497-76745516 Msa1077940:intron 35.0%
ATCACTTGCAGTTGAAAAGA+AGG + chr7_2:76745544-76745563 None:intergenic 35.0%
AACTTTGTACAGATCATCAG+CGG + chr7_2:76745600-76745619 None:intergenic 35.0%
ACATCATCATCATCATATCC+AGG - chr7_2:76745621-76745640 Msa1077940:intron 35.0%
CATCATCATCATCATATCCA+GGG - chr7_2:76745622-76745641 Msa1077940:intron 35.0%
ACATGTTCAGTAGTTACAAG+GGG - chr7_2:76745841-76745860 Msa1077940:five_prime_UTR 35.0%
! TCTTTTTCTCTCTCTGTCTC+TGG + chr7_2:76740188-76740207 None:intergenic 40.0%
AACGAGAAGAAACAGAAGAG+AGG + chr7_2:76740245-76740264 None:intergenic 40.0%
CTAAATGCAACTGAAACCGA+TGG + chr7_2:76740404-76740423 None:intergenic 40.0%
GTGCTCGTTTATTGACCATT+AGG - chr7_2:76740519-76740538 Msa1077940:intron 40.0%
GAAAATGATCCTTAGGGTTG+AGG - chr7_2:76740850-76740869 Msa1077940:intron 40.0%
! GATGCAAGAACTTTTCCATC+TGG + chr7_2:76740956-76740975 None:intergenic 40.0%
ACTAATTGCAACTTACTGCG+TGG + chr7_2:76740978-76740997 None:intergenic 40.0%
TGAAACTGGACGTTGCTTAA+AGG - chr7_2:76741096-76741115 Msa1077940:intron 40.0%
AGGTGTTAATTGGCCATATG+AGG - chr7_2:76741116-76741135 Msa1077940:intron 40.0%
GTGCTAAATGACTACAGGTT+AGG - chr7_2:76741293-76741312 Msa1077940:intron 40.0%
GTATTTGTGGATGCAATGGA+TGG + chr7_2:76741321-76741340 None:intergenic 40.0%
GCAAGTATTTGTGGATGCAA+TGG + chr7_2:76741325-76741344 None:intergenic 40.0%
! CATCCACAAATACTTGCTAG+TGG - chr7_2:76741328-76741347 Msa1077940:intron 40.0%
!! TCCATTGCTTTTCATGCCAA+AGG - chr7_2:76741561-76741580 Msa1077940:intron 40.0%
!! CCATTGCTTTTCATGCCAAA+GGG - chr7_2:76741562-76741581 Msa1077940:intron 40.0%
!! CATTGCTTTTCATGCCAAAG+GGG - chr7_2:76741563-76741582 Msa1077940:intron 40.0%
ATATCGTGCAGCTGTACATA+TGG - chr7_2:76741715-76741734 Msa1077940:intron 40.0%
ATATGGCACTACGACAAGAA+AGG - chr7_2:76741732-76741751 Msa1077940:intron 40.0%
TAAAGACAAGGCGATCTCTA+CGG - chr7_2:76741784-76741803 Msa1077940:intron 40.0%
! TGCTGCGCCATATCTTTTAA+CGG - chr7_2:76741827-76741846 Msa1077940:CDS 40.0%
TTCAGATTCCTCAATGACAG+AGG - chr7_2:76741977-76741996 Msa1077940:intron 40.0%
TTTGTGACAAAAACAGCAGG+TGG + chr7_2:76742032-76742051 None:intergenic 40.0%
GCATTTGTGACAAAAACAGC+AGG + chr7_2:76742035-76742054 None:intergenic 40.0%
AAAGGCAATGACACATTAGG+TGG + chr7_2:76742092-76742111 None:intergenic 40.0%
CTCGACTCATCAACAGAATA+CGG + chr7_2:76742128-76742147 None:intergenic 40.0%
TGATACTATAGTGTCTCCCA+TGG - chr7_2:76742253-76742272 Msa1077940:intron 40.0%
ATCTCCAAGACTGTATCCAT+GGG + chr7_2:76742272-76742291 None:intergenic 40.0%
AATCTCCAAGACTGTATCCA+TGG + chr7_2:76742273-76742292 None:intergenic 40.0%
TTAGAGAAAGCAGTATGCAC+GGG + chr7_2:76742326-76742345 None:intergenic 40.0%
GTGCATACTGCTTTCTCTAA+TGG - chr7_2:76742326-76742345 Msa1077940:intron 40.0%
AATGGAATGGGAATTGGCAT+CGG - chr7_2:76742344-76742363 Msa1077940:intron 40.0%
! TAAGAGAACTTGCATCGGTA+GGG + chr7_2:76742436-76742455 None:intergenic 40.0%
! TTAAGAGAACTTGCATCGGT+AGG + chr7_2:76742437-76742456 None:intergenic 40.0%
ACCGATGCAAGTTCTCTTAA+TGG - chr7_2:76742437-76742456 Msa1077940:intron 40.0%
TCTAGACAAACCGCAAATCA+TGG - chr7_2:76742476-76742495 Msa1077940:intron 40.0%
CTAGACAAACCGCAAATCAT+GGG - chr7_2:76742477-76742496 Msa1077940:intron 40.0%
TAGACAAACCGCAAATCATG+GGG - chr7_2:76742478-76742497 Msa1077940:intron 40.0%
GGGTCTCTTGAAGAAACAAA+CGG + chr7_2:76742530-76742549 None:intergenic 40.0%
AAGGTAATTCCCATCCACTT+GGG + chr7_2:76742550-76742569 None:intergenic 40.0%
AAAGGTAATTCCCATCCACT+TGG + chr7_2:76742551-76742570 None:intergenic 40.0%
GCTACATCAGCATTAGAAGT+GGG + chr7_2:76742695-76742714 None:intergenic 40.0%
TGCTACATCAGCATTAGAAG+TGG + chr7_2:76742696-76742715 None:intergenic 40.0%
ACCTGATCTTACAGAAGATC+CGG + chr7_2:76742756-76742775 None:intergenic 40.0%
!!! GGAGTCATTTTTCACACTCA+CGG - chr7_2:76742780-76742799 Msa1077940:CDS 40.0%
AGATTTCCGGATTCAGATAC+AGG + chr7_2:76742809-76742828 None:intergenic 40.0%
ACATCTGTCAGCATTTAGTG+GGG + chr7_2:76742993-76743012 None:intergenic 40.0%
GACATCTGTCAGCATTTAGT+GGG + chr7_2:76742994-76743013 None:intergenic 40.0%
TTCACTGCAAAGTGCAAACA+CGG + chr7_2:76743120-76743139 None:intergenic 40.0%
GTTTGCACTTTGCAGTGAAA+TGG - chr7_2:76743121-76743140 Msa1077940:CDS 40.0%
TGTACTGGAGTTTGTAATCC+AGG + chr7_2:76743221-76743240 None:intergenic 40.0%
ATACCAGACTCTTGATGTAC+TGG + chr7_2:76743236-76743255 None:intergenic 40.0%
GTATTGCAACATCACCAACT+CGG - chr7_2:76743252-76743271 Msa1077940:CDS 40.0%
ACCAAGTTATGTATGAGCTG+CGG - chr7_2:76743291-76743310 Msa1077940:CDS 40.0%
! CAAAGGTATGACTTTACTGG+GGG - chr7_2:76744223-76744242 Msa1077940:CDS 40.0%
! AAAGGTATGACTTTACTGGG+GGG - chr7_2:76744224-76744243 Msa1077940:CDS 40.0%
!!! TGGTGTTTGGTTTTGATGTC+TGG - chr7_2:76744468-76744487 Msa1077940:intron 40.0%
!!! GGTGTTTGGTTTTGATGTCT+GGG - chr7_2:76744469-76744488 Msa1077940:intron 40.0%
!!! GTGTTTGGTTTTGATGTCTG+GGG - chr7_2:76744470-76744489 Msa1077940:intron 40.0%
!! TTAGACTATGATGATGGTGG+TGG - chr7_2:76744543-76744562 Msa1077940:intron 40.0%
GATAATGTGAAGCAGATCAC+TGG + chr7_2:76745271-76745290 None:intergenic 40.0%
TGTTGAGCTTTCTCACCATA+AGG - chr7_2:76745408-76745427 Msa1077940:intron 40.0%
TGAACATGTTACACGTGGAA+AGG + chr7_2:76745830-76745849 None:intergenic 40.0%
ACTACTGAACATGTTACACG+TGG + chr7_2:76745835-76745854 None:intergenic 40.0%
CATGTTCAGTAGTTACAAGG+GGG - chr7_2:76745842-76745861 Msa1077940:five_prime_UTR 40.0%
CTGCACCTTGAAATCGAACA+CGG - chr7_2:76740136-76740155 Msa1077940:three_prime_UTR 45.0%
! TTTTCTCTCTCTGTCTCTGG+TGG + chr7_2:76740185-76740204 None:intergenic 45.0%
GATTTCAAGCTTACCACCCA+AGG + chr7_2:76741145-76741164 None:intergenic 45.0%
CTCCCACTAGCAAGTATTTG+TGG + chr7_2:76741334-76741353 None:intergenic 45.0%
! AATACTTGCTAGTGGGAGCT+TGG - chr7_2:76741336-76741355 Msa1077940:intron 45.0%
CCCTTTGGCATGAAAAGCAA+TGG + chr7_2:76741565-76741584 None:intergenic 45.0%
AACGGCAATGATTTCCCCTT+TGG + chr7_2:76741580-76741599 None:intergenic 45.0%
GAAATCATTGCCGTTGCATC+AGG - chr7_2:76741585-76741604 Msa1077940:intron 45.0%
AAAGACAAGGCGATCTCTAC+GGG - chr7_2:76741785-76741804 Msa1077940:intron 45.0%
AAAGATATGGCGCAGCATGA+GGG + chr7_2:76741824-76741843 None:intergenic 45.0%
AAAAGATATGGCGCAGCATG+AGG + chr7_2:76741825-76741844 None:intergenic 45.0%
ACCTCGGCCGTTAAAAGATA+TGG + chr7_2:76741837-76741856 None:intergenic 45.0%
GACTCATCAACAGAATACGG+AGG + chr7_2:76742125-76742144 None:intergenic 45.0%
ACAAATTGAGTCTTCTGCCG+TGG - chr7_2:76742193-76742212 Msa1077940:intron 45.0%
ATTCCGACTAACTCTCAAGC+TGG - chr7_2:76742290-76742309 Msa1077940:intron 45.0%
GTACCAGCTTGAGAGTTAGT+CGG + chr7_2:76742296-76742315 None:intergenic 45.0%
TGGATGAACCCCATGATTTG+CGG + chr7_2:76742489-76742508 None:intergenic 45.0%
AAATCATGGGGTTCATCCAG+AGG - chr7_2:76742490-76742509 Msa1077940:intron 45.0%
GGATGAAATTGACCATCCTC+TGG + chr7_2:76742509-76742528 None:intergenic 45.0%
GTTTCTTCAAGAGACCCAAG+TGG - chr7_2:76742533-76742552 Msa1077940:CDS 45.0%
TTCAAGAGACCCAAGTGGAT+GGG - chr7_2:76742538-76742557 Msa1077940:CDS 45.0%
ATGCCATCTTCTGCAATGTC+TGG - chr7_2:76742716-76742735 Msa1077940:CDS 45.0%
TCTGGCAGCATTAACATACC+CGG - chr7_2:76742734-76742753 Msa1077940:CDS 45.0%
CCTGATCTTACAGAAGATCC+GGG + chr7_2:76742755-76742774 None:intergenic 45.0%
GATGTCAGATCCATCATGTG+GGG + chr7_2:76742849-76742868 None:intergenic 45.0%
GGATGTCAGATCCATCATGT+GGG + chr7_2:76742850-76742869 None:intergenic 45.0%
TGGATGTCAGATCCATCATG+TGG + chr7_2:76742851-76742870 None:intergenic 45.0%
GGATTCGACTCATGATGGTT+TGG + chr7_2:76742871-76742890 None:intergenic 45.0%
TGACTGGATTCGACTCATGA+TGG + chr7_2:76742876-76742895 None:intergenic 45.0%
TGCCTTGTACCGTGAAGTTA+AGG - chr7_2:76742936-76742955 Msa1077940:intron 45.0%
GCCTTGTACCGTGAAGTTAA+GGG - chr7_2:76742937-76742956 Msa1077940:intron 45.0%
ACCCTTAACTTCACGGTACA+AGG + chr7_2:76742941-76742960 None:intergenic 45.0%
AGACCACACCCTTAACTTCA+CGG + chr7_2:76742948-76742967 None:intergenic 45.0%
TCAGCATTTAGTGGGGAACA+GGG + chr7_2:76742986-76743005 None:intergenic 45.0%
CGACATCTGTCAGCATTTAG+TGG + chr7_2:76742995-76743014 None:intergenic 45.0%
TCTACCGCATGGTGAAAAGT+GGG + chr7_2:76743150-76743169 None:intergenic 45.0%
ATCTACCGCATGGTGAAAAG+TGG + chr7_2:76743151-76743170 None:intergenic 45.0%
GCAGCTAAAAATCTACCGCA+TGG + chr7_2:76743161-76743180 None:intergenic 45.0%
! AGGAAGCATACATGCAACAC+AGG + chr7_2:76743183-76743202 None:intergenic 45.0%
CCAGGATCAGCTTCTATATG+AGG + chr7_2:76743203-76743222 None:intergenic 45.0%
CCTCATATAGAAGCTGATCC+TGG - chr7_2:76743200-76743219 Msa1077940:CDS 45.0%
ACTCCAGTACATCAAGAGTC+TGG - chr7_2:76743230-76743249 Msa1077940:CDS 45.0%
TCCGCAGCTCATACATAACT+TGG + chr7_2:76743295-76743314 None:intergenic 45.0%
! AGGAGTATGTGCTCAGATGT+AGG + chr7_2:76743868-76743887 None:intergenic 45.0%
TTGACCTCATCTTCAGCACT+CGG + chr7_2:76744156-76744175 None:intergenic 45.0%
TGCTGAAGATGAGGTCAATG+TGG - chr7_2:76744158-76744177 Msa1077940:intron 45.0%
! GCATGCTTTCATCCTTTTCC+CGG - chr7_2:76744180-76744199 Msa1077940:CDS 45.0%
! CATGCTTTCATCCTTTTCCC+GGG - chr7_2:76744181-76744200 Msa1077940:CDS 45.0%
! ATGCTTTCATCCTTTTCCCG+GGG - chr7_2:76744182-76744201 Msa1077940:CDS 45.0%
!! CGGGCTAGTTTATGGAACAA+AGG - chr7_2:76744206-76744225 Msa1077940:CDS 45.0%
CTTAGGATCCTCCACTATGA+TGG - chr7_2:76744320-76744339 Msa1077940:intron 45.0%
! TGGACCAAGTTACTTTCCTG+AGG - chr7_2:76744364-76744383 Msa1077940:intron 45.0%
GTCTCCTCAGGAAAGTAACT+TGG + chr7_2:76744371-76744390 None:intergenic 45.0%
! ATATAGAGCGTGCTGACAGT+AGG + chr7_2:76745060-76745079 None:intergenic 45.0%
! ACTAATGGGCATGAGGAAAG+AGG + chr7_2:76745798-76745817 None:intergenic 45.0%
TCTTTCCTCATGCCCATTAG+TGG - chr7_2:76745797-76745816 Msa1077940:five_prime_UTR 45.0%
CTTTCCTCATGCCCATTAGT+GGG - chr7_2:76745798-76745817 Msa1077940:five_prime_UTR 45.0%
AAAGGAAGTCGCCCACTAAT+GGG + chr7_2:76745812-76745831 None:intergenic 45.0%
!!! TTTTATTTTATTTTTCTTTT+TGG - chr7_2:76741912-76741931 Msa1077940:intron 5.0%
!!! AAAATTATTTTAAAAAGTAA+TGG + chr7_2:76743400-76743419 None:intergenic 5.0%
CCTCTCCGTGTTCGATTTCA+AGG + chr7_2:76740144-76740163 None:intergenic 50.0%
CCTTGAAATCGAACACGGAG+AGG - chr7_2:76740141-76740160 Msa1077940:three_prime_UTR 50.0%
! GCACCGGTAATTCTAACAGC+AGG - chr7_2:76740340-76740359 Msa1077940:three_prime_UTR 50.0%
GTAGCAAGAGATGCAAAGCG+TGG - chr7_2:76740749-76740768 Msa1077940:three_prime_UTR 50.0%
GTGAATCAGCCTCAACCCTA+AGG + chr7_2:76740862-76740881 None:intergenic 50.0%
GTTCTTTAGTACCTGCGCCA+AGG - chr7_2:76740906-76740925 Msa1077940:intron 50.0%
GCCAAGGTCTACTATTGCAG+CGG - chr7_2:76740922-76740941 Msa1077940:intron 50.0%
TACCTTGTGGCCTGATGCAA+CGG + chr7_2:76741598-76741617 None:intergenic 50.0%
! GCCATATCTTTTAACGGCCG+AGG - chr7_2:76741833-76741852 Msa1077940:CDS 50.0%
ACATGCTTGCTTTGATGCGC+AGG - chr7_2:76741938-76741957 Msa1077940:intron 50.0%
ATGACAGAGGCAACGTCCAT+TGG - chr7_2:76741990-76742009 Msa1077940:intron 50.0%
GTGACAAAAACAGCAGGTGG+AGG + chr7_2:76742029-76742048 None:intergenic 50.0%
GTCTCCCATGGATACAGTCT+TGG - chr7_2:76742265-76742284 Msa1077940:intron 50.0%
ATCGGCAACCTCACAATGGA+CGG - chr7_2:76742362-76742381 Msa1077940:intron 50.0%
CAACCTCACAATGGACGGTA+TGG - chr7_2:76742367-76742386 Msa1077940:intron 50.0%
TCTCCATACCGTCCATTGTG+AGG + chr7_2:76742373-76742392 None:intergenic 50.0%
GGAGACTGATGAAACCAGAC+CGG - chr7_2:76742388-76742407 Msa1077940:intron 50.0%
!! CTGTGTTGACTTCCTTCAGC+CGG + chr7_2:76742410-76742429 None:intergenic 50.0%
CTTCAAGAGACCCAAGTGGA+TGG - chr7_2:76742537-76742556 Msa1077940:CDS 50.0%
!! ATGATGGGTCAAAGCCAAGC+TGG - chr7_2:76742584-76742603 Msa1077940:intron 50.0%
CTGCCAGACATTGCAGAAGA+TGG + chr7_2:76742722-76742741 None:intergenic 50.0%
CCCGGATCTTCTGTAAGATC+AGG - chr7_2:76742752-76742771 Msa1077940:CDS 50.0%
CGGACACCTGTATCTGAATC+CGG - chr7_2:76742800-76742819 Msa1077940:CDS 50.0%
GTACCGTGAAGTTAAGGGTG+TGG - chr7_2:76742942-76742961 Msa1077940:intron 50.0%
GTCAGCATTTAGTGGGGAAC+AGG + chr7_2:76742987-76743006 None:intergenic 50.0%
!! ACTTCAGAAGGTACCTGCAG+AGG + chr7_2:76743039-76743058 None:intergenic 50.0%
GCTGATATTGGATGCCGAGT+TGG + chr7_2:76743269-76743288 None:intergenic 50.0%
GCTGCGGATATATTCCCTTG+AGG - chr7_2:76743307-76743326 Msa1077940:CDS 50.0%
GCGGATATATTCCCTTGAGG+AGG - chr7_2:76743310-76743329 Msa1077940:CDS 50.0%
GTACGGACACAAGCAGAGAA+GGG + chr7_2:76743560-76743579 None:intergenic 50.0%
GAGCACATACTCCTTGCCTA+TGG - chr7_2:76743874-76743893 Msa1077940:CDS 50.0%
AGAACCATGACGTCGACCAT+AGG + chr7_2:76743893-76743912 None:intergenic 50.0%
! TGCTTTCATCCTTTTCCCGG+GGG - chr7_2:76744183-76744202 Msa1077940:CDS 50.0%
TTACTGGGGGGAGATCAATG+TGG - chr7_2:76744236-76744255 Msa1077940:CDS 50.0%
TTTCCTGAGGAGACCATCGT+TGG - chr7_2:76744377-76744396 Msa1077940:intron 50.0%
! TCACTGACTGACTCCAACGA+TGG + chr7_2:76744393-76744412 None:intergenic 50.0%
TTGGAGTCAGTCAGTGAGCA+AGG - chr7_2:76744396-76744415 Msa1077940:intron 50.0%
TCTCAACCAAGTGACCTCTC+GGG + chr7_2:76744966-76744985 None:intergenic 50.0%
CTCTCAACCAAGTGACCTCT+CGG + chr7_2:76744967-76744986 None:intergenic 50.0%
GAGTTCTCTCTTCAACCTCG+AGG - chr7_2:76744984-76745003 Msa1077940:intron 50.0%
! CTCTTCAACCTCGAGGTACT+CGG - chr7_2:76744991-76745010 Msa1077940:intron 50.0%
! GAGGTACTCGGTTTGAGACT+CGG - chr7_2:76745003-76745022 Msa1077940:intron 50.0%
! AGGTACTCGGTTTGAGACTC+GGG - chr7_2:76745004-76745023 Msa1077940:intron 50.0%
GCAAGACATAAAGGAGGCCA+GGG + chr7_2:76745323-76745342 None:intergenic 50.0%
AGCAAGACATAAAGGAGGCC+AGG + chr7_2:76745324-76745343 None:intergenic 50.0%
GAGCACAGGCAACAAAGAAC+TGG - chr7_2:76745647-76745666 Msa1077940:intron 50.0%
ATGGGCATGAGGAAAGAGGA+GGG + chr7_2:76745794-76745813 None:intergenic 50.0%
AATGGGCATGAGGAAAGAGG+AGG + chr7_2:76745795-76745814 None:intergenic 50.0%
GAAAGGAAGTCGCCCACTAA+TGG + chr7_2:76745813-76745832 None:intergenic 50.0%
CATCGGAATCGTGATCGCAC+CGG - chr7_2:76740324-76740343 Msa1077940:three_prime_UTR 55.0%
CAAAGCGTGGCCTATTGTCG+TGG - chr7_2:76740762-76740781 Msa1077940:intron 55.0%
! GGGTTGAGGCTGATTCACTG+CGG - chr7_2:76740864-76740883 Msa1077940:intron 55.0%
GCAATAGTAGACCTTGGCGC+AGG + chr7_2:76740920-76740939 None:intergenic 55.0%
GCCGCTGCAATAGTAGACCT+TGG + chr7_2:76740926-76740945 None:intergenic 55.0%
TTGGCCATATGAGGACGCCT+TGG - chr7_2:76741125-76741144 Msa1077940:intron 55.0%
TGGCCATATGAGGACGCCTT+GGG - chr7_2:76741126-76741145 Msa1077940:intron 55.0%
GGACGTTGCCTCTGTCATTG+AGG + chr7_2:76741988-76742007 None:intergenic 55.0%
! TACGGAGGCACGAGGAAGAA+AGG + chr7_2:76742110-76742129 None:intergenic 55.0%
! CAACAGAATACGGAGGCACG+AGG + chr7_2:76742118-76742137 None:intergenic 55.0%
CAGCATGCTAGTCATGACGC+TGG - chr7_2:76742158-76742177 Msa1077940:intron 55.0%
!! GCTAGTCATGACGCTGGTTC+AGG - chr7_2:76742164-76742183 Msa1077940:intron 55.0%
TGCCGTGGCTCAGTTTCAAG+CGG - chr7_2:76742208-76742227 Msa1077940:intron 55.0%
GTCCGCTTGAAACTGAGCCA+CGG + chr7_2:76742213-76742232 None:intergenic 55.0%
!! TGGCATCGGCAACCTCACAA+TGG - chr7_2:76742358-76742377 Msa1077940:intron 55.0%
GATGAAACCAGACCGGCTGA+AGG - chr7_2:76742395-76742414 Msa1077940:intron 55.0%
TTGACTTCCTTCAGCCGGTC+TGG + chr7_2:76742405-76742424 None:intergenic 55.0%
CATGGGGTTCATCCAGAGGA+TGG - chr7_2:76742494-76742513 Msa1077940:intron 55.0%
! CCGTGTGAGGTAGCATTGAG+GGG + chr7_2:76742613-76742632 None:intergenic 55.0%
CCCCTCAATGCTACCTCACA+CGG - chr7_2:76742610-76742629 Msa1077940:intron 55.0%
! CCCGTGTGAGGTAGCATTGA+GGG + chr7_2:76742614-76742633 None:intergenic 55.0%
CCCTCAATGCTACCTCACAC+GGG - chr7_2:76742611-76742630 Msa1077940:intron 55.0%
ACCCGTGTGAGGTAGCATTG+AGG + chr7_2:76742615-76742634 None:intergenic 55.0%
TCACGACTAACACCCGTGTG+AGG + chr7_2:76742626-76742645 None:intergenic 55.0%
! CAGACGTTGCGAGTTCTGAC+TGG + chr7_2:76742892-76742911 None:intergenic 55.0%
GTCAGAACTCGCAACGTCTG+TGG - chr7_2:76742892-76742911 Msa1077940:intron 55.0%
CTTCACGGTACAAGGCAGCT+CGG + chr7_2:76742933-76742952 None:intergenic 55.0%
!! CAGAAGGTACCTGCAGAGGA+CGG + chr7_2:76743035-76743054 None:intergenic 55.0%
!! GGTGCCCACTTTTCACCATG+CGG - chr7_2:76743143-76743162 Msa1077940:CDS 55.0%
TCCCTTGAGGAGGCAACGTA+AGG - chr7_2:76743320-76743339 Msa1077940:CDS 55.0%
GCCTTACGTTGCCTCCTCAA+GGG + chr7_2:76743324-76743343 None:intergenic 55.0%
TGCCTTACGTTGCCTCCTCA+AGG + chr7_2:76743325-76743344 None:intergenic 55.0%
!! TTGGGTTGGTGCTTGCGTCT+CGG - chr7_2:76743444-76743463 Msa1077940:CDS 55.0%
GGTACGGACACAAGCAGAGA+AGG + chr7_2:76743561-76743580 None:intergenic 55.0%
CATGACGTCGACCATAGGCA+AGG + chr7_2:76743888-76743907 None:intergenic 55.0%
CTTGCCTATGGTCGACGTCA+TGG - chr7_2:76743886-76743905 Msa1077940:CDS 55.0%
!! GCTTCCGAGTGCTGAAGATG+AGG - chr7_2:76744149-76744168 Msa1077940:intron 55.0%
! TTTCATCCTTTTCCCGGGGG+CGG - chr7_2:76744186-76744205 Msa1077940:CDS 55.0%
GGTGAGCACCATCATAGTGG+AGG + chr7_2:76744331-76744350 None:intergenic 55.0%
! CCACTATGATGGTGCTCACC+CGG - chr7_2:76744331-76744350 Msa1077940:intron 55.0%
ATGGTGCTCACCCGGTGAAT+GGG - chr7_2:76744339-76744358 Msa1077940:intron 55.0%
TTGGTCCAGTCCCATTCACC+GGG + chr7_2:76744352-76744371 None:intergenic 55.0%
CTTGGTCCAGTCCCATTCAC+CGG + chr7_2:76744353-76744372 None:intergenic 55.0%
ACTCCAACGATGGTCTCCTC+AGG + chr7_2:76744383-76744402 None:intergenic 55.0%
ATGCTTGTCTGTCTCCCGAG+AGG - chr7_2:76744949-76744968 Msa1077940:intron 55.0%
GTCTCAAACCGAGTACCTCG+AGG + chr7_2:76745002-76745021 None:intergenic 55.0%
! GTGGTAAGCCTTTTGCACCC+TGG - chr7_2:76745303-76745322 Msa1077940:intron 55.0%
AAAGGAGGCCAGGGTGCAAA+AGG + chr7_2:76745314-76745333 None:intergenic 55.0%
CATCAGCGGAAACAGCTGCA+TGG + chr7_2:76745586-76745605 None:intergenic 55.0%
TCATATCCAGGGCTGAGCAC+AGG - chr7_2:76745633-76745652 Msa1077940:intron 55.0%
GAGGAGGGGTGGGAGTAAAA+GGG + chr7_2:76745779-76745798 None:intergenic 55.0%
AGAGGAGGGGTGGGAGTAAA+AGG + chr7_2:76745780-76745799 None:intergenic 55.0%
CATGAGGAAAGAGGAGGGGT+GGG + chr7_2:76745789-76745808 None:intergenic 55.0%
TGGGCATGAGGAAAGAGGAG+GGG + chr7_2:76745793-76745812 None:intergenic 55.0%
ACCTTCACCGTCGTCTCGCT+AGG - chr7_2:76740110-76740129 Msa1077940:three_prime_UTR 60.0%
ACCTAGCGAGACGACGGTGA+AGG + chr7_2:76740114-76740133 None:intergenic 60.0%
GCAGAGACCTAGCGAGACGA+CGG + chr7_2:76740120-76740139 None:intergenic 60.0%
GCAGCGGCGTTTAGTCCAGA+TGG - chr7_2:76740938-76740957 Msa1077940:intron 60.0%
! CCACCCAAGGCGTCCTCATA+TGG + chr7_2:76741132-76741151 None:intergenic 60.0%
CCATATGAGGACGCCTTGGG+TGG - chr7_2:76741129-76741148 Msa1077940:intron 60.0%
TGCCGTTGCATCAGGCCACA+AGG - chr7_2:76741593-76741612 Msa1077940:intron 60.0%
GCATTGAGGGGAGACCAGCT+TGG + chr7_2:76742601-76742620 None:intergenic 60.0%
TACCTCATGCCGTCCTCTGC+AGG - chr7_2:76743023-76743042 Msa1077940:CDS 60.0%
TACCTGCAGAGGACGGCATG+AGG + chr7_2:76743028-76743047 None:intergenic 60.0%
!! TGGGTTGGTGCTTGCGTCTC+GGG - chr7_2:76743445-76743464 Msa1077940:CDS 60.0%
! TTCATCCTTTTCCCGGGGGC+GGG - chr7_2:76744187-76744206 Msa1077940:CDS 60.0%
TCCATAAACTAGCCCGCCCC+CGG + chr7_2:76744202-76744221 None:intergenic 60.0%
CCGGGTGAGCACCATCATAG+TGG + chr7_2:76744334-76744353 None:intergenic 60.0%
GATGGTGCTCACCCGGTGAA+TGG - chr7_2:76744338-76744357 Msa1077940:intron 60.0%
CTGTCTCCCGAGAGGTCACT+TGG - chr7_2:76744957-76744976 Msa1077940:intron 60.0%
TTGTTGCCTGTGCTCAGCCC+TGG + chr7_2:76745642-76745661 None:intergenic 60.0%
GCATGAGGAAAGAGGAGGGG+TGG + chr7_2:76745790-76745809 None:intergenic 60.0%
! GTCGCCCACTAATGGGCATG+AGG + chr7_2:76745805-76745824 None:intergenic 60.0%
CGCAACGTCTGTGGCTGCAG+CGG - chr7_2:76742901-76742920 Msa1077940:intron 65.0%
CCATAAACTAGCCCGCCCCC+GGG + chr7_2:76744201-76744220 None:intergenic 65.0%
GCTCACCCGGTGAATGGGAC+TGG - chr7_2:76744344-76744363 Msa1077940:intron 65.0%
ACTAGCCCGCCCCCGGGAAA+AGG + chr7_2:76744195-76744214 None:intergenic 70.0%
!! CCCGGGGGCGGGCTAGTTTA+TGG - chr7_2:76744198-76744217 Msa1077940:CDS 70.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 76740053 76745961 76740053 ID=Msa1077940;Name=Msa1077940
chr7_2 mRNA 76740053 76745961 76740053 ID=Msa1077940-mRNA-1;Parent=Msa1077940;Name=Msa1077940-mRNA-1;_AED=0.12;_eAED=0.12;_QI=259|1|1|1|0.71|0.8|15|439|773
chr7_2 exon 76740053 76740423 76740053 ID=Msa1077940-mRNA-1:exon:18663;Parent=Msa1077940-mRNA-1
chr7_2 exon 76740709 76740771 76740709 ID=Msa1077940-mRNA-1:exon:18662;Parent=Msa1077940-mRNA-1
chr7_2 exon 76741597 76741703 76741597 ID=Msa1077940-mRNA-1:exon:18661;Parent=Msa1077940-mRNA-1
chr7_2 exon 76741787 76741900 76741787 ID=Msa1077940-mRNA-1:exon:18660;Parent=Msa1077940-mRNA-1
chr7_2 exon 76742042 76742155 76742042 ID=Msa1077940-mRNA-1:exon:18659;Parent=Msa1077940-mRNA-1
chr7_2 exon 76742512 76742572 76742512 ID=Msa1077940-mRNA-1:exon:18658;Parent=Msa1077940-mRNA-1
chr7_2 exon 76742678 76742878 76742678 ID=Msa1077940-mRNA-1:exon:18657;Parent=Msa1077940-mRNA-1
chr7_2 exon 76742970 76744054 76742970 ID=Msa1077940-mRNA-1:exon:18656;Parent=Msa1077940-mRNA-1
chr7_2 exon 76744160 76744288 76744160 ID=Msa1077940-mRNA-1:exon:18655;Parent=Msa1077940-mRNA-1
chr7_2 exon 76744400 76744467 76744400 ID=Msa1077940-mRNA-1:exon:18654;Parent=Msa1077940-mRNA-1
chr7_2 exon 76744596 76744704 76744596 ID=Msa1077940-mRNA-1:exon:18653;Parent=Msa1077940-mRNA-1
chr7_2 exon 76744864 76744948 76744864 ID=Msa1077940-mRNA-1:exon:18652;Parent=Msa1077940-mRNA-1
chr7_2 exon 76745033 76745149 76745033 ID=Msa1077940-mRNA-1:exon:18651;Parent=Msa1077940-mRNA-1
chr7_2 exon 76745231 76745317 76745231 ID=Msa1077940-mRNA-1:exon:18650;Parent=Msa1077940-mRNA-1
chr7_2 exon 76745653 76745961 76745653 ID=Msa1077940-mRNA-1:exon:18649;Parent=Msa1077940-mRNA-1
chr7_2 five_prime_UTR 76745703 76745961 76745703 ID=Msa1077940-mRNA-1:five_prime_utr;Parent=Msa1077940-mRNA-1
chr7_2 CDS 76745653 76745702 76745653 ID=Msa1077940-mRNA-1:cds;Parent=Msa1077940-mRNA-1
chr7_2 CDS 76745231 76745317 76745231 ID=Msa1077940-mRNA-1:cds;Parent=Msa1077940-mRNA-1
chr7_2 CDS 76745033 76745149 76745033 ID=Msa1077940-mRNA-1:cds;Parent=Msa1077940-mRNA-1
chr7_2 CDS 76744864 76744948 76744864 ID=Msa1077940-mRNA-1:cds;Parent=Msa1077940-mRNA-1
chr7_2 CDS 76744596 76744704 76744596 ID=Msa1077940-mRNA-1:cds;Parent=Msa1077940-mRNA-1
chr7_2 CDS 76744400 76744467 76744400 ID=Msa1077940-mRNA-1:cds;Parent=Msa1077940-mRNA-1
chr7_2 CDS 76744160 76744288 76744160 ID=Msa1077940-mRNA-1:cds;Parent=Msa1077940-mRNA-1
chr7_2 CDS 76742970 76744054 76742970 ID=Msa1077940-mRNA-1:cds;Parent=Msa1077940-mRNA-1
chr7_2 CDS 76742678 76742878 76742678 ID=Msa1077940-mRNA-1:cds;Parent=Msa1077940-mRNA-1
chr7_2 CDS 76742512 76742572 76742512 ID=Msa1077940-mRNA-1:cds;Parent=Msa1077940-mRNA-1
chr7_2 CDS 76742042 76742155 76742042 ID=Msa1077940-mRNA-1:cds;Parent=Msa1077940-mRNA-1
chr7_2 CDS 76741787 76741900 76741787 ID=Msa1077940-mRNA-1:cds;Parent=Msa1077940-mRNA-1
chr7_2 CDS 76741602 76741703 76741602 ID=Msa1077940-mRNA-1:cds;Parent=Msa1077940-mRNA-1
chr7_2 three_prime_UTR 76741597 76741601 76741597 ID=Msa1077940-mRNA-1:three_prime_utr;Parent=Msa1077940-mRNA-1
chr7_2 three_prime_UTR 76740709 76740771 76740709 ID=Msa1077940-mRNA-1:three_prime_utr;Parent=Msa1077940-mRNA-1
chr7_2 three_prime_UTR 76740053 76740423 76740053 ID=Msa1077940-mRNA-1:three_prime_utr;Parent=Msa1077940-mRNA-1
Gene Sequence

>Msa1077940

ATGACGAGAATTCATCGGAATCGTGATCGCACCGGTAATTCTAACAGCAGCAATGTCTTTAATTTGCTTGCACGGAGAGAGATTTCACCGAGAACAAAACATGTAGCAAGAGATGCAAAGCGTGGCCTATTGTCGTGGGTTGAGGCTGATTCACTGCGGCATTTGTCAGCCAAGTATTGTTCTTTAGTACCTGCGCCAAGGTCTACTATTGCAGCGGCGTTTAGTCCAGATGGAAAAGTTCTTGCATCCACGCATGGTGACCACACAGTAAAGATAATCGACTGTGAAACTGGACGTTGCTTAAAGGTGTTAATTGGCCATATGAGGACGCCTTGGGTGGTTAGGTTCCATCCATTGCATCCACAAATACTTGCTAGTGGGAGCTTGGATCAAGAAGTTCGATTATGGGATGCTAACACATCGGAGTGCATAACATCTCACCACTTCTATCGACCAATTGCATCCATTGCTTTTCATGCCAAAGGGGAAATCATTGCCGTTGCATCAGGCCACAAGCTGTACATATGGCACTACGACAAGAAAGGCGAAGCATCCTACTCCCCAATTTTTGTGTTAAAGACAAGGCGATCTCTACGGGCTGTTCATTTTCACCCTCATGCTGCGCCATATCTTTTAACGGCCGAGGTCAACGATCTTGACTCTTCAGATTCCTCAATGACAGAGGCAACGTCCATTGGTTACTTACAATATCCTCCACCTGCTGTTTTTGTCACAAATGCTCATCCTACAGAACATGTTACTTTGTCTAGTGAACCACCTAATGTGTCATTGCCTTTCTTCCTCGTGCCTCCGTATTCTGTTGATGAGTCGAGAGCAGAGTTACAGCATGCTAGTCATGACGCTGGTTCAGGTAGAATACAAATTGAGTCTTCTGCCGTGGCTCAGTTTCAAGCGGACACAAATTCAACAGAACAACATGATACTATAGTGTCTCCCATGGATACAGTCTTGGAGATTCCGACTAACTCTCAAGCTGGTACAGAATATCCCGTGCATACTGCTTTCTCTAATGGAATGGGAATTGGCATCGGCAACCTCACAATGGACGGTATGGAGACTGATGAAACCAGACCGGCTGAAGGAAGTCAACACAGAAACCCTACCGATGCAAGTTCTCTTAATGGTATGTTACATGGATTATCTAGACAAACCGCAAATCATGGGGTTCATCCAGAGGATGGTCAATTTCATCCGTTTGTTTCTTCAAGAGACCCAAGTGGATGGGAATTACCTTTTCTACAAGGATGGATGATGGGTCAAAGCCAAGCTGGTCTCCCCTCAATGCTACCTCACACGGGTGTTAGTCGTGACACTCTAGCTCCACAGATTAGTTCTAGTGTAATGGCTAATACTCTTCCCACTTCTAATGCTGATGTAGCAATGCCATCTTCTGCAATGTCTGGCAGCATTAACATACCCGGATCTTCTGTAAGATCAGGTTTACGGAGTCATTTTTCACACTCACGGACACCTGTATCTGAATCCGGAAATCTTGCTGCTTCTATTAATACCCCACATGATGGATCTGACATCCAAACCATCATGAGTCGAATCCAGTCAGAACTCGCAACGTCTGTGGCTGCAGCGGCAGCTACCGAGCTGCCTTGTACCGTGAAGTTAAGGGTGTGGTCTCATGACATAAAAAATCCCTGTTCCCCACTAAATGCTGACAGATGTCGTCTAATTATACCTCATGCCGTCCTCTGCAGTGAAATGGGTGCCCACTTTTCACCATGCGGTAGATTTTTAGCTGCCTGTGTTGCATGTATGCTTCCTCATATAGAAGCTGATCCTGGATTACAAACTCCAGTACATCAAGAGTCTGGTATTGCAACATCACCAACTCGGCATCCAATATCAGCACACCAAGTTATGTATGAGCTGCGGATATATTCCCTTGAGGAGGCAACATTTGGGTTGGTGCTTGCGTCTCGGGCAATTAGAGCAGCTCATTGTCTGACTTCAATTCAGTTCTCACCTACATCTGAGCACATACTCCTTGCCTATGGTCGACGTCATGGTTCTCTTCTTAAAAGCATTGTCATTGATGGAGAAACAACATTACCTATATATACAGTATTAGAGGTATATAGAGTTTCAGATATGGAACTTGTTAGGGTGCTTCCGAGTGCTGAAGATGAGGTCAATGTGGCATGCTTTCATCCTTTTCCCGGGGGCGGGCTAGTTTATGGAACAAAGGAAGGAAAGCTTAGGATCCTCCACTATGATGGTGCTCACCCGGTGAATGGGACTGGACCAAGTTACTTTCCTGAGGAGACCATCGTTGGAGTCAGTCAGTGA
Protein sequence

>Msa1077940

MTRIHRNRDRTGNSNSSNVFNLLARREISPRTKHVARDAKRGLLSWVEADSLRHLSAKYCSLVPAPRSTIAAAFSPDGKVLASTHGDHTVKIIDCETGRCLKVLIGHMRTPWVVRFHPLHPQILASGSLDQEVRLWDANTSECITSHHFYRPIASIAFHAKGEIIAVASGHKLYIWHYDKKGEASYSPIFVLKTRRSLRAVHFHPHAAPYLLTAEVNDLDSSDSSMTEATSIGYLQYPPPAVFVTNAHPTEHVTLSSEPPNVSLPFFLVPPYSVDESRAELQHASHDAGSGRIQIESSAVAQFQADTNSTEQHDTIVSPMDTVLEIPTNSQAGTEYPVHTAFSNGMGIGIGNLTMDGMETDETRPAEGSQHRNPTDASSLNGMLHGLSRQTANHGVHPEDGQFHPFVSSRDPSGWELPFLQGWMMGQSQAGLPSMLPHTGVSRDTLAPQISSSVMANTLPTSNADVAMPSSAMSGSINIPGSSVRSGLRSHFSHSRTPVSESGNLAASINTPHDGSDIQTIMSRIQSELATSVAAAAATELPCTVKLRVWSHDIKNPCSPLNADRCRLIIPHAVLCSEMGAHFSPCGRFLAACVACMLPHIEADPGLQTPVHQESGIATSPTRHPISAHQVMYELRIYSLEEATFGLVLASRAIRAAHCLTSIQFSPTSEHILLAYGRRHGSLLKSIVIDGETTLPIYTVLEVYRVSDMELVRVLPSAEDEVNVACFHPFPGGGLVYGTKEGKLRILHYDGAHPVNGTGPSYFPEETIVGVSQ*